Title: Data Validation and Organization of Metadata for Local and
Remote Tables
Description: Validate data in data frames, 'tibble' objects, 'Spark'
'DataFrames', and database tables. Validation pipelines can be made using
easily-readable, consecutive validation steps. Upon execution of the
validation plan, several reporting options are available. User-defined
thresholds for failure rates allow for the determination of appropriate
reporting actions. Many other workflows are available including an
information management workflow, where the aim is to record, collect, and
generate useful information on data tables.
Author: Richard Iannone [aut, cre] ,
Mauricio Vargas [aut]
Maintainer: Richard Iannone <riannone@me.com>
Diff between pointblank versions 0.10.0 dated 2022-01-23 and 0.11.0 dated 2022-07-13
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pointblank-0.11.0/pointblank/tests/testthat/test-test_fns.R | 361 ++--- pointblank-0.11.0/pointblank/tests/testthat/test-transformers.R | 115 + pointblank-0.11.0/pointblank/tests/testthat/test-util_functions.R | 48 261 files changed, 19913 insertions(+), 12032 deletions(-)
Title: Smooth Survival Models, Including Generalized Survival Models
Description: R implementation of generalized survival models (GSMs), smooth accelerated failure time (AFT) models and Markov multi-state models. For the GSMs, g(S(t|x))=eta(t,x) for a link function g, survival S at time t with covariates x and a linear predictor eta(t,x). The main assumption is that the time effect(s) are smooth <doi:10.1177/0962280216664760>. For fully parametric models with natural splines, this re-implements Stata's 'stpm2' function, which are flexible parametric survival models developed by Royston and colleagues. We have extended the parametric models to include any smooth parametric smoothers for time. We have also extended the model to include any smooth penalized smoothers from the 'mgcv' package, using penalized likelihood. These models include left truncation, right censoring, interval censoring, gamma frailties and normal random effects <doi:10.1002/sim.7451>, and copulas. For the smooth AFTs, S(t|x) = S_0(t*eta(t,x)), where the baseline survival function S_0(t)=exp(-exp(eta_0(t))) is modelled for natural splines for eta_0, and the time-dependent cumulative acceleration factor eta(t,x)=\int_0^t exp(eta_1(u,x)) du for log acceleration factor eta_1(u,x). The Markov multi-state models allow for a range of models with smooth transitions to predict transition probabilities, length of stay, utilities and costs, with differences, ratios and standardisation.
Author: Mark Clements [aut, cre],
Xing-Rong Liu [aut],
Benjamin Christoffersen [aut],
Paul Lambert [ctb],
Lasse Hjort Jakobsen [ctb],
Alessandro Gasparini [ctb],
Gordon Smyth [cph],
Patrick Alken [cph],
Simon Wood [cph],
Rhys Ulerich [cph]
Maintainer: Mark Clements <mark.clements@ki.se>
Diff between rstpm2 versions 1.5.6 dated 2022-05-10 and 1.5.7 dated 2022-07-13
DESCRIPTION | 8 +++--- MD5 | 30 ++++++++++++----------- NAMESPACE | 5 ++- R/aft.R | 43 +++++++++++++++------------------ R/multistate.R | 19 ++++++++------ R/pm2-3.R | 43 ++++++++++++++++++++------------- R/random.R |only inst/doc/Introduction.pdf |binary inst/doc/SimpleGuide.pdf |binary inst/doc/multistate.pdf |binary inst/doc/predictnl.pdf |binary inst/working_code.R | 59 ++++++++++++++++++++++++++++++++++++++++++++++ man/aft.Rd | 5 +++ man/markov_msm.Rd | 5 +++ man/predict-methods.Rd | 5 ++- man/smoothpwc.Rd |only src/aft.cpp | 11 +++++--- 17 files changed, 157 insertions(+), 76 deletions(-)
Title: R Interface to 'FOAAS'
Description: R access to the 'FOAAS' (F... Off As A Service) web service is provided.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between rfoaas versions 2.1.0 dated 2020-01-09 and 2.3.2 dated 2022-07-13
ChangeLog | 25 +++++++++++++++++++++++++ DESCRIPTION | 11 ++++++----- MD5 | 12 ++++++------ R/foaas.R | 12 ++++++++++-- README.md | 11 +++++++++-- man/rfoaas-package.Rd | 14 +++++++++++++- tests/runTestsAgainstFOAAS.R | 12 ++++++++++-- 7 files changed, 79 insertions(+), 18 deletions(-)
Title: Gaussian Mixture Model for Multi-Omics Data Integration
Description: A multivariate Gaussian mixture model framework to integrate multiple types of genomic data and allow modeling of inter-data-type correlations for association analysis. 'IMIX' can be implemented to test whether a disease is associated with genes in multiple genomic data types, such as DNA methylation, copy number variation, gene expression, etc. It can also study the integration of multiple pathways. 'IMIX' uses the summary statistics of association test outputs and conduct integration analysis for two or three types of genomics data. 'IMIX' features statistically-principled model selection, global FDR control and computational efficiency. Details are described in Ziqiao Wang and Peng Wei (2020) <doi:10.1093/bioinformatics/btaa1001>.
Author: Ziqiao Wang [aut, cre] ,
Peng Wei [ths]
Maintainer: Ziqiao Wang <wzqjanet@gmail.com>
Diff between IMIX versions 1.1.4 dated 2021-02-10 and 1.1.5 dated 2022-07-13
DESCRIPTION | 8 MD5 | 6 R/IMIX.R | 55 ++++- R/IMIX_cor_restrict.R | 493 +++++++++++++++++++++++++------------------------- 4 files changed, 306 insertions(+), 256 deletions(-)
Title: Cluster Gauss-Newton Method
Description: Find multiple solutions of a nonlinear least squares problem. Cluster Gauss-Newton method does not assume uniqueness of the solution of the nonlinear least squares problem and compute approximate multiple minimizers. Please cite the following paper when this software is used in your research: Aoki et al. (2020) <doi:10.1007/s11081-020-09571-2>. Cluster Gauss–Newton method. Optimization and Engineering, 1-31.
Author: Yasunori Aoki
Maintainer: Yasunori Aoki <yaoki@uwaterloo.ca>
Diff between CGNM versions 0.3.2 dated 2022-06-04 and 0.4.0 dated 2022-07-13
DESCRIPTION | 6 MD5 | 14 - NAMESPACE | 2 R/Cluster_Gauss_Newton_method.R | 33 ++ R/PostProcess.R | 268 +++++++++++++++++++++++ inst/doc/CGNM-vignette.html | 416 +++++++++++++++++++++---------------- man/Cluster_Gauss_Newton_method.Rd | 8 man/plot_SSRsurface.Rd |only man/plot_profileLikelihood.Rd |only 9 files changed, 556 insertions(+), 191 deletions(-)
Title: A System of Soil Classification for Making and Interpreting Soil
Surveys
Description: Taxonomic dictionaries, formative element lists, and functions related to the maintenance, development and application of U.S. Soil Taxonomy.
Data and functionality are based on official U.S. Department of Agriculture sources including the latest edition of the Keys to Soil Taxonomy. Descriptions and metadata are obtained from the National Soil Information System or Soil Survey Geographic databases. Other sources are referenced in the data documentation.
Provides tools for understanding and interacting with concepts in the U.S. Soil Taxonomic System. Most of the current utilities are for working with taxonomic concepts at the "higher" taxonomic levels: Order, Suborder, Great Group, and Subgroup.
Author: Andrew Brown [aut, cre],
Dylan Beaudette [aut]
Maintainer: Andrew Brown <andrew.g.brown@usda.gov>
Diff between SoilTaxonomy versions 0.1.4 dated 2021-08-05 and 0.2.0 dated 2022-07-13
SoilTaxonomy-0.1.4/SoilTaxonomy/R/parseFamily.R |only SoilTaxonomy-0.1.4/SoilTaxonomy/inst/doc/Family-level_Taxonomy.R |only SoilTaxonomy-0.1.4/SoilTaxonomy/inst/doc/Family-level_Taxonomy.Rmd |only SoilTaxonomy-0.1.4/SoilTaxonomy/inst/doc/Family-level_Taxonomy.html |only SoilTaxonomy-0.1.4/SoilTaxonomy/vignettes/Family-level_Taxonomy.Rmd |only SoilTaxonomy-0.2.0/SoilTaxonomy/DESCRIPTION | 22 SoilTaxonomy-0.2.0/SoilTaxonomy/MD5 | 135 +- SoilTaxonomy-0.2.0/SoilTaxonomy/NAMESPACE | 58 - SoilTaxonomy-0.2.0/SoilTaxonomy/NEWS.md | 60 - SoilTaxonomy-0.2.0/SoilTaxonomy/R/AAAAA.R | 26 SoilTaxonomy-0.2.0/SoilTaxonomy/R/SoilTaxonomy-package.R |only SoilTaxonomy-0.2.0/SoilTaxonomy/R/data-documentation.R | 166 +-- SoilTaxonomy-0.2.0/SoilTaxonomy/R/data-filters.R |only SoilTaxonomy-0.2.0/SoilTaxonomy/R/diagnostic-features.R | 116 -- SoilTaxonomy-0.2.0/SoilTaxonomy/R/explainST.R | 492 ++++----- SoilTaxonomy-0.2.0/SoilTaxonomy/R/family-classes.R |only SoilTaxonomy-0.2.0/SoilTaxonomy/R/formative-elements.R | 316 ++--- SoilTaxonomy-0.2.0/SoilTaxonomy/R/getChildTaxa.R | 106 - SoilTaxonomy-0.2.0/SoilTaxonomy/R/getLastChildTaxon.R | 82 - SoilTaxonomy-0.2.0/SoilTaxonomy/R/getParentTaxa.R | 146 +- SoilTaxonomy-0.2.0/SoilTaxonomy/R/getTaxonAtLevel.R | 98 - SoilTaxonomy-0.2.0/SoilTaxonomy/R/higherTaxaCodes.R | 454 ++++---- SoilTaxonomy-0.2.0/SoilTaxonomy/R/higherTaxaLevels.R | 179 +-- SoilTaxonomy-0.2.0/SoilTaxonomy/R/isValidST.R | 72 - SoilTaxonomy-0.2.0/SoilTaxonomy/README.md | 536 ++++------ SoilTaxonomy-0.2.0/SoilTaxonomy/build/vignette.rds |binary SoilTaxonomy-0.2.0/SoilTaxonomy/data/ST.rda |binary SoilTaxonomy-0.2.0/SoilTaxonomy/data/ST_family_classes.rda |binary SoilTaxonomy-0.2.0/SoilTaxonomy/data/ST_features.rda |binary SoilTaxonomy-0.2.0/SoilTaxonomy/data/ST_formative_elements.rda |binary SoilTaxonomy-0.2.0/SoilTaxonomy/data/ST_unique_list.rda |binary SoilTaxonomy-0.2.0/SoilTaxonomy/inst/CITATION |only SoilTaxonomy-0.2.0/SoilTaxonomy/inst/WORDLIST | 90 - SoilTaxonomy-0.2.0/SoilTaxonomy/inst/doc/diagnostics.R |only SoilTaxonomy-0.2.0/SoilTaxonomy/inst/doc/diagnostics.Rmd |only SoilTaxonomy-0.2.0/SoilTaxonomy/inst/doc/diagnostics.html |only SoilTaxonomy-0.2.0/SoilTaxonomy/inst/doc/family-level_taxonomy.R |only SoilTaxonomy-0.2.0/SoilTaxonomy/inst/doc/family-level_taxonomy.Rmd |only SoilTaxonomy-0.2.0/SoilTaxonomy/inst/doc/family-level_taxonomy.html |only SoilTaxonomy-0.2.0/SoilTaxonomy/inst/doc/taxon-letter-codes.Rmd | 334 +++--- SoilTaxonomy-0.2.0/SoilTaxonomy/inst/doc/taxon-letter-codes.html | 335 +++++- SoilTaxonomy-0.2.0/SoilTaxonomy/man/FormativeElements.Rd | 98 - SoilTaxonomy-0.2.0/SoilTaxonomy/man/ST.Rd | 48 SoilTaxonomy-0.2.0/SoilTaxonomy/man/ST_family_classes.Rd | 40 SoilTaxonomy-0.2.0/SoilTaxonomy/man/ST_features.Rd | 40 SoilTaxonomy-0.2.0/SoilTaxonomy/man/ST_formative_elements.Rd | 38 SoilTaxonomy-0.2.0/SoilTaxonomy/man/ST_higher_taxa_codes_12th.Rd | 52 SoilTaxonomy-0.2.0/SoilTaxonomy/man/SoilTaxonomy-package.Rd |only SoilTaxonomy-0.2.0/SoilTaxonomy/man/code_to_level.Rd | 58 - SoilTaxonomy-0.2.0/SoilTaxonomy/man/decompose_taxon_code.Rd | 56 - SoilTaxonomy-0.2.0/SoilTaxonomy/man/explainST.Rd | 60 - SoilTaxonomy-0.2.0/SoilTaxonomy/man/getChildTaxa.Rd | 74 - SoilTaxonomy-0.2.0/SoilTaxonomy/man/getLastChildTaxon.Rd | 50 SoilTaxonomy-0.2.0/SoilTaxonomy/man/getParentTaxa.Rd | 74 - SoilTaxonomy-0.2.0/SoilTaxonomy/man/getTaxonAtLevel.Rd | 68 - SoilTaxonomy-0.2.0/SoilTaxonomy/man/get_ST_family_classes.Rd |only SoilTaxonomy-0.2.0/SoilTaxonomy/man/get_ST_features.Rd | 107 + SoilTaxonomy-0.2.0/SoilTaxonomy/man/isValidST.Rd | 48 SoilTaxonomy-0.2.0/SoilTaxonomy/man/level_to_taxon.Rd | 48 SoilTaxonomy-0.2.0/SoilTaxonomy/man/parse_family.Rd | 69 - SoilTaxonomy-0.2.0/SoilTaxonomy/man/preceding_taxon_codes.Rd | 56 - SoilTaxonomy-0.2.0/SoilTaxonomy/man/relative_taxon_code_position.Rd | 56 - SoilTaxonomy-0.2.0/SoilTaxonomy/man/taxon_code_to_taxon.Rd | 50 SoilTaxonomy-0.2.0/SoilTaxonomy/man/taxon_to_level.Rd | 48 SoilTaxonomy-0.2.0/SoilTaxonomy/man/taxon_to_taxon_code.Rd | 50 SoilTaxonomy-0.2.0/SoilTaxonomy/tests/testthat.R | 8 SoilTaxonomy-0.2.0/SoilTaxonomy/tests/testthat/test-diagnostic-features.R | 58 - SoilTaxonomy-0.2.0/SoilTaxonomy/tests/testthat/test-formative-element-parsing.R | 444 ++++---- SoilTaxonomy-0.2.0/SoilTaxonomy/tests/testthat/test-getChildTaxa.R | 20 SoilTaxonomy-0.2.0/SoilTaxonomy/tests/testthat/test-getLastChildTaxon.R | 6 SoilTaxonomy-0.2.0/SoilTaxonomy/tests/testthat/test-getParentTaxa.R | 36 SoilTaxonomy-0.2.0/SoilTaxonomy/tests/testthat/test-getTaxonAtLevel.R | 52 SoilTaxonomy-0.2.0/SoilTaxonomy/tests/testthat/test-higherTaxaCodes.R | 163 +-- SoilTaxonomy-0.2.0/SoilTaxonomy/tests/testthat/test-higherTaxaLevels.R | 32 SoilTaxonomy-0.2.0/SoilTaxonomy/tests/testthat/test-parseFamily.R | 100 + SoilTaxonomy-0.2.0/SoilTaxonomy/vignettes/diagnostics.Rmd |only SoilTaxonomy-0.2.0/SoilTaxonomy/vignettes/family-level_taxonomy.Rmd |only SoilTaxonomy-0.2.0/SoilTaxonomy/vignettes/taxon-letter-codes.Rmd | 334 +++--- 78 files changed, 3364 insertions(+), 3000 deletions(-)
Title: Summary Tables and Plots for Statistical Models and Data:
Beautiful, Customizable, and Publication-Ready
Description: Create beautiful and customizable tables to summarize several
statistical models side-by-side. Draw coefficient plots, multi-level
cross-tabs, dataset summaries, balance tables (a.k.a. "Table 1s"), and
correlation matrices. This package supports dozens of statistical models, and
it can produce tables in HTML, LaTeX, Word, Markdown, PDF, PowerPoint, Excel,
RTF, JPG, or PNG. Tables can easily be embedded in 'Rmarkdown' or 'knitr'
dynamic documents. Details can be found in Arel-Bundock (2022)
<doi:10.18637/jss.v103.i01>.
Author: Vincent Arel-Bundock [aut, cre]
,
Joachim Gassen [ctb] ,
Nathan Eastwood [ctb],
Nick Huntington-Klein [ctb] ,
Moritz Schwarz [ctb] ,
Benjamin Elbers [ctb] ,
Grant McDermott [ctb] ,
Lukas Wallrich [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between modelsummary versions 1.0.0 dated 2022-06-29 and 1.0.1 dated 2022-07-13
DESCRIPTION | 34 +++--- MD5 | 100 +++++++++--------- NAMESPACE | 1 NEWS.md | 9 + R/get_estimates.R | 51 ++++++--- R/get_gof.R | 16 +- R/get_vcov.R | 41 ++++--- R/hush.R |only R/methods_stats.R | 8 + R/modelsummary.R | 76 +++++++++----- R/sanitize_conf_level.R |only R/sanitize_shape.R | 26 ++++ R/sanitize_statistic.R |only R/sanity_checks.R | 51 ++------- build/modelsummary.pdf |binary man/get_estimates.Rd | 25 ++++ man/get_vcov.Rd | 4 man/get_vcov.mlm.Rd | 4 man/hush.Rd |only man/modelplot.Rd | 4 man/modelsummary.Rd | 47 ++++++-- man/msummary.Rd | 47 ++++++-- tests/testthat/_snaps/escape.md | 20 +++ tests/testthat/_snaps/gt.md | 12 ++ tests/testthat/_snaps/huxtable.md | 2 tests/testthat/_snaps/interaction.md | 1 tests/testthat/_snaps/kableExtra.md | 1 tests/testthat/_snaps/latex.md | 1 tests/testthat/_snaps/mathmode.md | 19 +++ tests/testthat/known_output/output-file.docx |binary tests/testthat/known_output/output-file.jpg |binary tests/testthat/known_output/output-file.md | 1 tests/testthat/known_output/output-file.png |binary tests/testthat/known_output/output-file.pptx |binary tests/testthat/known_output/output-file.rtf | 146 +++++++++++---------------- tests/testthat/known_output/output-file.tex | 1 tests/testthat/known_output/output-file.txt | 1 tests/testthat/known_output/output_1.tex | 1 tests/testthat/test-add_rows.R | 2 tests/testthat/test-coef_map.R | 6 - tests/testthat/test-conf_level.R |only tests/testthat/test-custom.R | 6 - tests/testthat/test-datasummary.R | 18 +-- tests/testthat/test-fmt.R | 6 - tests/testthat/test-gof.R | 7 + tests/testthat/test-group.R | 5 tests/testthat/test-modelplot.R | 2 tests/testthat/test-modelsummary_list.R | 10 + tests/testthat/test-pkg-MASS.R |only tests/testthat/test-pkg-lme4.R | 51 ++++++--- tests/testthat/test-rounding.R | 39 ++++--- tests/testthat/test-shape.R | 20 +++ tests/testthat/test-statistic_override.R | 2 tests/testthat/test-vcov.R | 2 54 files changed, 592 insertions(+), 334 deletions(-)
Title: Gauss - Dantzig Selector: Aggregation over Random Models
Description: The method aims to identify important factors in screening experiments by aggregation over random models as studied in Singh and Stufken (2022) <doi:10.48550/arXiv.2205.13497>. This package provides functions to run the Gauss-Dantzig selector on screening experiments when interactions may be affecting the response. Currently, all functions require each factor to be at two levels coded as +1 and -1.
Author: Rakhi Singh [cre, aut] ,
John Stufken [aut]
Maintainer: Rakhi Singh <agrakhi@gmail.com>
Diff between GDSARM versions 0.1.0 dated 2022-06-23 and 0.1.1 dated 2022-07-13
DESCRIPTION | 8 +++--- MD5 | 36 +++++++++++++++--------------- R/GDSARM.R | 56 ++++++++++++++++++++++++------------------------ R/GDS_givencols.R | 46 ++++++++++++++++++--------------------- R/StepIII_stepwise.R | 8 +++--- R/StepI_chooseints.R | 8 +++--- R/dantzig.delta.R | 14 ++++++------ R/dantzigS.R | 4 +-- R/dataCompoundExt.R | 4 +-- R/dataHamadaWu.R | 6 ++--- build/partial.rdb |binary man/GDSARM.Rd | 50 +++++++++++++++++++++--------------------- man/GDS_givencols.Rd | 44 ++++++++++++++++++------------------- man/StepIII_stepwise.Rd | 8 +++--- man/StepI_chooseints.Rd | 8 +++--- man/dantzig.delta.Rd | 14 ++++++------ man/dantzigS.Rd | 4 +-- man/dataCompoundExt.Rd | 4 +-- man/dataHamadaWu.Rd | 6 ++--- 19 files changed, 162 insertions(+), 166 deletions(-)
Title: Interpolation Methods
Description: Bivariate data interpolation on regular and irregular
grids, either linear or using splines are the main part of this
package. It is intended to provide FOSS replacement functions for
the ACM licensed akima::interp and tripack::tri.mesh functions.
Linear interpolation is implemented in
interp::interp(..., method="linear"), this corresponds to the call
akima::interp(..., linear=TRUE) which is the default setting and
covers most of akima::interp use cases in depending packages.
A re-implementation of Akimas irregular grid spline
interpolation (akima::interp(..., linear=FALSE)) is now also
available via interp::interp(..., method="akima").
Estimators for partial derivatives are now also available in
interp::locpoly(), these are a prerequisite for the spline interpolation.
The basic part is a GPLed triangulation algorithm (sweep hull
algorithm by David Sinclair) providing the starting point for the
irregular grid interpolator. As side effect this algorithm is also
used to provide replacements for almost all functions of the tripack
package which also suffers from the same ACM license restrictions.
All functions are designed to be backward compatible with their
akima / tripack counterparts.
Author: Albrecht Gebhardt [aut, cre, cph],
Roger Bivand [aut],
David Sinclair [aut, cph]
Maintainer: Albrecht Gebhardt <albrecht.gebhardt@aau.at>
Diff between interp versions 1.1-2 dated 2022-05-10 and 1.1-3 dated 2022-07-13
DESCRIPTION | 11 ++++++----- MD5 | 20 ++++++++++++++------ NAMESPACE | 1 + R/triSht2tri.R |only build |only inst |only man/locpoly.Rd | 5 +++-- man/tri.find.Rd | 3 ++- man/triSht.Rd | 9 ++++++++- man/triSht2tri.Rd |only src/common.cpp | 28 +++++++++++++++++++++++++++- vignettes |only 12 files changed, 61 insertions(+), 16 deletions(-)
Title: Customise the Appearance of 'shinydashboard' Applications using
Themes
Description: Allows manual creation of themes and logos to be used in
applications created using the 'shinydashboard' package. Removes the need to
change the underlying css code by wrapping it into a set of convenient R
functions.
Author: Nik Lilovski [aut, cre]
Maintainer: Nik Lilovski <nik.lilovski@outlook.com>
Diff between dashboardthemes versions 1.1.5 dated 2021-08-21 and 1.1.6 dated 2022-07-13
dashboardthemes-1.1.5/dashboardthemes/tests/testthat/test-LintRules.R |only dashboardthemes-1.1.6/dashboardthemes/DESCRIPTION | 8 dashboardthemes-1.1.6/dashboardthemes/MD5 | 8 dashboardthemes-1.1.6/dashboardthemes/R/zzz.R |only dashboardthemes-1.1.6/dashboardthemes/README.md | 324 ---------- dashboardthemes-1.1.6/dashboardthemes/inst/doc/using_dashboardthemes.html | 5 6 files changed, 15 insertions(+), 330 deletions(-)
More information about dashboardthemes at CRAN
Permanent link
Title: Simulate Agricultural Production and Evolution of Pesticide
Resistance
Description: Simulates individual-based models of agricultural pest management
and the evolution of pesticide resistance. Management occurs on a spatially
explicit landscape that is divided into an arbitrary number of farms that
can grow one of up to 10 crops and apply one of up to 10 pesticides. Pest
genomes are modelled in a way that allows for any number of pest traits with
an arbitrary covariance structure that is constructed using an evolutionary
algorithm in the mine_gmatrix() function. Simulations are then run using the
run_farm_sim() function. This package thereby allows for highly mechanistic
social-ecological models of the evolution of pesticide resistance under
different types of crop rotation and pesticide application regimes.
Author: A. Bradley Duthie [aut, cre] ,
Rose McKeon [aut, ctr],
Rosie Mangan [ctr],
Luc Bussiére [ctr],
Matthew Tinsley [ctr]
Maintainer: A. Bradley Duthie <brad.duthie@gmail.com>
Diff between resevol versions 0.2.0.9 dated 2022-01-06 and 0.3.0.1 dated 2022-07-13
DESCRIPTION | 8 MD5 | 36 +- NEWS.md | 5 R/landscape.R | 174 ++++++++++++ R/mine_gmatrix.R | 63 +++- R/sim_farming.R | 393 +++++++++++++++++++++++----- build/vignette.rds |binary inst/doc/evolutionary_algorithm.html | 44 +-- man/make_landscape.Rd | 7 man/mine_gmatrix.Rd | 91 ++++-- man/run_farm_sim.Rd | 475 +++++++++++++++++++++++++---------- src/land_change.c | 363 +++++++++----------------- src/land_change.h | 20 - src/resevol_init.c | 4 src/sim_farming.c | 128 +++++++++ src/utilities.c | 22 + src/utilities.h | 2 tests/testthat/test-landscape.R | 102 +++++++ tests/testthat/test-sim_farming.R | 1 19 files changed, 1383 insertions(+), 555 deletions(-)
Title: Tools to Visualize CM SAF NetCDF Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF)
is a ground segment of the European Organization for the Exploitation of
Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application
Facilities. The CM SAF contributes to the sustainable monitoring of the climate
system by providing essential climate variables related to the energy and water
cycle of the atmosphere (<https://www.cmsaf.eu>). It is a joint cooperation of eight
National Meteorological and Hydrological Services.
The 'cmsafvis' R-package provides a collection of R-operators for the analysis and
visualization of CM SAF NetCDF data.
CM SAF climate data records are provided for free via (<https://wui.cmsaf.eu/safira>).
Detailed information and test data are provided on the CM SAF webpage
(<http://www.cmsaf.eu/R_toolbox>).
Author: Steffen Kothe [aut, cre],
Danny Parsons [ctb]
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>
Diff between cmsafvis versions 1.1.11 dated 2022-03-15 and 1.1.12 dated 2022-07-13
cmsafvis-1.1.11/cmsafvis/tests/spelling.Rout.save |only cmsafvis-1.1.12/cmsafvis/DESCRIPTION | 18 cmsafvis-1.1.12/cmsafvis/MD5 | 129 cmsafvis-1.1.12/cmsafvis/NAMESPACE | 84 cmsafvis-1.1.12/cmsafvis/NEWS.md | 118 cmsafvis-1.1.12/cmsafvis/R/CapWords.R | 20 cmsafvis-1.1.12/cmsafvis/R/absolute_map.R | 430 +- cmsafvis-1.1.12/cmsafvis/R/absolute_map_builder.R | 156 cmsafvis-1.1.12/cmsafvis/R/adjust_location.R | 62 cmsafvis-1.1.12/cmsafvis/R/anomaly_map.R | 564 +- cmsafvis-1.1.12/cmsafvis/R/apply_mask_clima.R | 134 cmsafvis-1.1.12/cmsafvis/R/apply_mask_current.R | 428 +- cmsafvis-1.1.12/cmsafvis/R/apply_mask_final.R | 410 - cmsafvis-1.1.12/cmsafvis/R/calculate_climatology.R | 586 +- cmsafvis-1.1.12/cmsafvis/R/calculate_climatology_mean.R | 144 cmsafvis-1.1.12/cmsafvis/R/calculate_climatology_outfile.R | 160 cmsafvis-1.1.12/cmsafvis/R/check_infile_monitor_climate.R | 40 cmsafvis-1.1.12/cmsafvis/R/climatology_map.R | 542 +- cmsafvis-1.1.12/cmsafvis/R/cmsaf.diff.R | 606 +- cmsafvis-1.1.12/cmsafvis/R/cmsaf.hist.R | 208 - cmsafvis-1.1.12/cmsafvis/R/cmsaf.hovmoller.R | 198 cmsafvis-1.1.12/cmsafvis/R/cmsaf.scatter.R | 224 - cmsafvis-1.1.12/cmsafvis/R/cmsaf.side.by.side.R | 778 +-- cmsafvis-1.1.12/cmsafvis/R/cmsaf.time.series.R | 414 +- cmsafvis-1.1.12/cmsafvis/R/cmsafvis.R | 98 cmsafvis-1.1.12/cmsafvis/R/compare_grid.R | 94 cmsafvis-1.1.12/cmsafvis/R/compare_spatial_range.R | 88 cmsafvis-1.1.12/cmsafvis/R/create_country_mask.R | 330 - cmsafvis-1.1.12/cmsafvis/R/extractFinalOutfile.R | 204 cmsafvis-1.1.12/cmsafvis/R/extractOutfile.R | 98 cmsafvis-1.1.12/cmsafvis/R/extractOutfileMean.R | 90 cmsafvis-1.1.12/cmsafvis/R/extract_climate_files.R | 334 - cmsafvis-1.1.12/cmsafvis/R/fieldmean_and_anomaly_map.R | 552 +- cmsafvis-1.1.12/cmsafvis/R/fieldmean_clima.R | 110 cmsafvis-1.1.12/cmsafvis/R/fieldmean_current.R | 164 cmsafvis-1.1.12/cmsafvis/R/fieldmean_ensemble.R | 324 - cmsafvis-1.1.12/cmsafvis/R/fieldmean_plot.R | 494 +- cmsafvis-1.1.12/cmsafvis/R/getColors.R | 198 cmsafvis-1.1.12/cmsafvis/R/getUserOptions.R | 84 cmsafvis-1.1.12/cmsafvis/R/get_basename_vis.R | 68 cmsafvis-1.1.12/cmsafvis/R/monitor_climate.R | 322 - cmsafvis-1.1.12/cmsafvis/R/parse_arguments.R | 1952 ++++----- cmsafvis-1.1.12/cmsafvis/R/plot_abs_map.R | 1772 ++++---- cmsafvis-1.1.12/cmsafvis/R/plot_abs_map_mean.R | 1856 ++++----- cmsafvis-1.1.12/cmsafvis/R/plot_fieldmean.R | 1426 +++--- cmsafvis-1.1.12/cmsafvis/R/plot_fieldmean_and_map.R | 2258 +++++------ cmsafvis-1.1.12/cmsafvis/R/plot_labeling.R | 328 - cmsafvis-1.1.12/cmsafvis/R/plot_time_series.R | 214 - cmsafvis-1.1.12/cmsafvis/R/plot_trend.R | 1090 ++--- cmsafvis-1.1.12/cmsafvis/R/plot_warming_stripes.R | 656 +-- cmsafvis-1.1.12/cmsafvis/R/quicklook.R | 1834 ++++---- cmsafvis-1.1.12/cmsafvis/R/render_plot.R | 1278 +++--- cmsafvis-1.1.12/cmsafvis/R/render_plot_1d.R | 24 cmsafvis-1.1.12/cmsafvis/R/render_plot_hovmoller.R | 126 cmsafvis-1.1.12/cmsafvis/R/render_plot_scatter.R | 504 +- cmsafvis-1.1.12/cmsafvis/R/render_plot_side_by_side.R | 2666 ++++++------- cmsafvis-1.1.12/cmsafvis/R/render_region_plot.R | 516 +- cmsafvis-1.1.12/cmsafvis/R/reset_par.R | 72 cmsafvis-1.1.12/cmsafvis/R/time_series_plot.R | 388 - cmsafvis-1.1.12/cmsafvis/R/trend_plot.R | 396 - cmsafvis-1.1.12/cmsafvis/R/warming_stripes_plot.R | 410 - cmsafvis-1.1.12/cmsafvis/build/partial.rdb |binary cmsafvis-1.1.12/cmsafvis/inst/WORDLIST | 151 cmsafvis-1.1.12/cmsafvis/inst/extdata/quicklook_config.yml | 1984 ++++----- cmsafvis-1.1.12/cmsafvis/man/cmsafvis.Rd | 146 cmsafvis-1.1.12/cmsafvis/man/render_plot_1d.Rd | 6 66 files changed, 16095 insertions(+), 16063 deletions(-)
Title: Construct Process Maps Using Event Data
Description: Visualize event logs using directed graphs, i.e. process maps. Part of the 'bupaR' framework.
Author: Gert Janssenswillen [aut, cre],
Gerard van Hulzen [ctb],
Benoît Depaire [ctb],
Felix Mannhardt [ctb],
Thijs Beuving [ctb],
urvikalia [ctb]
Maintainer: Gert Janssenswillen <gert.janssenswillen@uhasselt.be>
Diff between processmapR versions 0.5.0 dated 2022-07-10 and 0.5.1 dated 2022-07-13
DESCRIPTION | 8 - MD5 | 28 ++-- R/frequency.R | 41 +++++- R/precedence_matrix.R | 5 inst/doc/processmapr.html | 4 man/frequency.Rd | 47 +++--- man/lined_chart.Rd | 224 ++++++++++++++++---------------- man/precedence_matrix.Rd | 68 ++++----- man/precedence_matrix_absolute.Rd | 38 ++--- man/process_map.Rd | 252 ++++++++++++++++++------------------- man/process_matrix.Rd | 66 ++++----- man/resource_map.Rd | 108 +++++++-------- man/resource_matrix.Rd | 98 +++++++------- man/trace_explorer.Rd | 194 ++++++++++++++-------------- tests/testthat/test_dotted_chart.R | 5 15 files changed, 613 insertions(+), 573 deletions(-)
Title: Effect Displays for Linear, Generalized Linear, and Other Models
Description: Graphical and tabular effect displays, e.g., of interactions, for
various statistical models with linear predictors.
Author: John Fox [aut, cre],
Sanford Weisberg [aut],
Brad Price [aut],
Michael Friendly [aut],
Jangman Hong [aut],
Robert Andersen [ctb],
David Firth [ctb],
Steve Taylor [ctb],
R Core Team [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between effects versions 4.2-1 dated 2022-01-06 and 4.2-2 dated 2022-07-13
effects-4.2-1/effects/inst/doc/methods-supported-by-effects.R |only effects-4.2-1/effects/inst/doc/methods-supported-by-effects.Rnw |only effects-4.2-1/effects/inst/doc/methods-supported-by-effects.pdf |only effects-4.2-1/effects/vignettes/methods-supported-by-effects.Rnw |only effects-4.2-1/effects/vignettes/methods-supported-by-effects.bib |only effects-4.2-2/effects/DESCRIPTION | 13 effects-4.2-2/effects/MD5 | 28 effects-4.2-2/effects/NEWS | 11 effects-4.2-2/effects/R/Effect.R | 29 effects-4.2-2/effects/R/utilities.R | 1320 +++++----- effects-4.2-2/effects/build/partial.rdb |binary effects-4.2-2/effects/build/vignette.rds |binary effects-4.2-2/effects/inst/doc/functions-supported-by-effects.R |only effects-4.2-2/effects/inst/doc/functions-supported-by-effects.Rnw |only effects-4.2-2/effects/inst/doc/functions-supported-by-effects.pdf |only effects-4.2-2/effects/inst/doc/partial-residuals.pdf |binary effects-4.2-2/effects/inst/doc/predictor-effects-gallery.pdf |binary effects-4.2-2/effects/man/effects-package.Rd | 4 effects-4.2-2/effects/vignettes/functions-supported-by-effects.Rnw |only effects-4.2-2/effects/vignettes/functions-supported-by-effects.bib |only 20 files changed, 720 insertions(+), 685 deletions(-)
Title: Single-Species, Multi-Species, and Integrated Spatial Occupancy
Models
Description: Fits single-species, multi-species, and integrated non-spatial and spatial occupancy models using Markov Chain Monte Carlo (MCMC). Models are fit using Polya-Gamma data augmentation detailed in Polson, Scott, and Windle (2013) <doi:10.1080/01621459.2013.829001>. Spatial models are fit using either Gaussian processes or Nearest Neighbor Gaussian Processes (NNGP) for large spatial datasets. Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2020) <arXiv:2001.09111>. Provides functionality for data integration of multiple single-species occupancy data sets using a joint likelihood framework. Details on data integration are given in Miller, Pacifici, Sanderlin, and Reich (2019) <doi:10.1111/2041-210X.13110>. Details on single-species and multi-species models are found in MacKenzie, Nichols, Lachman, Droege, Royle, and Langtimm (2002) <doi:10.1890/0012-9658(2002)083[2248:ESORWD]2.0.CO;2> and Dorazio and Royle <doi:10.1198/016214505000000015>, respectively.
Author: Jeffrey Doser [aut, cre],
Andrew Finley [aut],
Marc Kery [ctb]
Maintainer: Jeffrey Doser <doserjef@msu.edu>
Diff between spOccupancy versions 0.3.2 dated 2022-05-23 and 0.4.0 dated 2022-07-13
DESCRIPTION | 12 MD5 | 89 +++-- NAMESPACE | 13 NEWS.md | 7 R/PGOcc.R | 9 R/generics.R | 770 ++++++++++++++++++++++++++++++++++++++++----- R/lfJSDM.R | 7 R/lfMsPGOcc.R | 1 R/mkMatUtil.R | 3 R/msPGOcc.R | 1 R/ppcOcc.R | 96 +++++ R/sfJSDM.R | 7 R/simOcc.R | 71 +++- R/simTOcc.R |only R/spPGOcc.R | 1 R/stPGOcc.R |only R/tPGOcc.R |only R/waicOcc.R | 11 README.md | 42 +- build/partial.rdb |binary data/hbefTrends.rda |only man/PGOcc.Rd | 5 man/fitted.stPGOcc.Rd |only man/fitted.tPGOcc.Rd |only man/hbefTrends.rda.Rd |only man/ppcOcc.Rd | 44 ++ man/predict.stPGOcc.Rd |only man/predict.tPGOcc.Rd |only man/simMsOcc.Rd | 4 man/simOcc.Rd | 6 man/simTOcc.Rd |only man/stPGOcc.Rd |only man/summary.stPGOcc.Rd |only man/summary.tPGOcc.Rd |only man/tPGOcc.Rd |only man/waicOcc.Rd | 8 src/PGOcc.cpp | 3 src/init.cpp | 3 src/intPGOcc.cpp | 3 src/lfJSDM.cpp | 3 src/lfMsPGOcc.cpp | 3 src/msPGOcc.cpp | 3 src/sfJSDMNNGP.cpp | 7 src/sfMsPGOccNNGP.cpp | 8 src/spIntPGOcc.cpp | 3 src/spMsPGOcc.cpp | 3 src/spMsPGOccNNGP.cpp | 3 src/spOccupancy.h | 50 ++ src/spPGOccNNGP.cpp | 1 src/stPGOccNNGP.cpp |only src/stPGOccNNGPPredict.cpp |only src/tPGOcc.cpp |only src/util.cpp | 10 src/util.h | 1 54 files changed, 1099 insertions(+), 212 deletions(-)
Title: Custom Inputs Widgets for Shiny
Description: Collection of custom input controls and user interface components for 'Shiny' applications.
Give your applications a unique and colorful style !
Author: Victor Perrier [aut, cre, cph],
Fanny Meyer [aut],
David Granjon [aut],
Ian Fellows [ctb] ,
Wil Davis [ctb] ,
Spencer Matthews [ctb] ,
JavaScript and CSS libraries authors [ctb, cph]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between shinyWidgets versions 0.7.0 dated 2022-05-11 and 0.7.1 dated 2022-07-13
DESCRIPTION | 8 +-- MD5 | 28 +++++------ NEWS.md | 10 ++++ R/virtual-select.R | 3 + inst/assets/bootstrap-select/picker-bindings.js | 25 +++++++--- inst/assets/shinyWidgets-bindings.min.js | 2 inst/examples/virtual-select/default/app.R | 53 +++++++++++++++------ inst/packer/virtual-select.js | 2 inst/packer/virtual-select.js.LICENSE.txt | 2 man/checkboxGroupButtons.Rd | 14 ----- man/numericInputIcon.Rd | 2 man/numericRangeInput.Rd | 2 man/radioGroupButtons.Rd | 13 ----- man/textInputIcon.Rd | 2 man/virtualSelectInput.Rd | 59 +++++++++++++++++------- 15 files changed, 141 insertions(+), 84 deletions(-)
Title: Cartography for Statistical Analysis
Description: Creating maps for statistical analysis such as proportional circles, choropleth, typology and flows. Some functions use 'shiny' or 'leaflet' technologies for dynamism and interactivity.
The great features are :
- Create maps in a web environment where the parameters are modifiable on the fly ('shiny' and 'leaflet' technologies).
- Create interactive maps through zoom and pop-up ('leaflet' technology).
- Create frozen maps with the possibility to add labels.
Author: Sebastien Novella [aut, cre],
Sebastien Calvet [aut],
Nicolas Chauvot [aut],
PSAR-AT Unite CED - INSEE PACA [ctb],
SED - DR Hauts-de-France - INSEE [ctb],
PSAR-SL - DR Auvergne-Rhone-Alpes - INSEE [ctb],
PSAR-EER - DR Occitanie - INSEE [ctb],
SED - D [...truncated...]
Maintainer: Sebastien Novella <sebastien.novella@insee.fr>
Diff between oceanis versions 1.8.4 dated 2021-11-25 and 1.8.5 dated 2022-07-13
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oceanis-1.8.5/oceanis/R/add_legende_saphirs.R | 4 oceanis-1.8.5/oceanis/R/add_legende_typo.R | 7 oceanis-1.8.5/oceanis/R/add_legende_typo_symboles.R | 8 oceanis-1.8.5/oceanis/R/add_typo_symboles.R | 4 oceanis-1.8.5/oceanis/R/coordonnees_etiquettes.R | 4 oceanis-1.8.5/oceanis/R/export_jpeg.R | 12 oceanis-1.8.5/oceanis/R/export_pdf.R | 8 oceanis-1.8.5/oceanis/R/export_png.R | 8 oceanis-1.8.5/oceanis/R/leaflet_classes.R | 18 oceanis-1.8.5/oceanis/R/leaflet_classes_ronds.R | 18 oceanis-1.8.5/oceanis/R/leaflet_fonds_simples.R | 8 oceanis-1.8.5/oceanis/R/leaflet_joignantes.R | 27 oceanis-1.8.5/oceanis/R/leaflet_oursins.R | 14 oceanis-1.8.5/oceanis/R/leaflet_ronds.R | 18 oceanis-1.8.5/oceanis/R/leaflet_ronds_classes.R | 18 oceanis-1.8.5/oceanis/R/leaflet_saphirs.R | 14 oceanis-1.8.5/oceanis/R/leaflet_typo.R | 14 oceanis-1.8.5/oceanis/R/oceanis-package.R | 12 oceanis-1.8.5/oceanis/R/plot_classes.R | 28 oceanis-1.8.5/oceanis/R/plot_classes_ronds.R | 32 oceanis-1.8.5/oceanis/R/plot_joignantes.R | 42 oceanis-1.8.5/oceanis/R/plot_oursins.R | 20 oceanis-1.8.5/oceanis/R/plot_ronds.R | 28 oceanis-1.8.5/oceanis/R/plot_ronds_classes.R | 32 oceanis-1.8.5/oceanis/R/plot_saphirs.R | 24 oceanis-1.8.5/oceanis/R/plot_typo.R | 28 oceanis-1.8.5/oceanis/R/plot_typo_symboles.R | 20 oceanis-1.8.5/oceanis/R/set_couleur_classes.R | 12 oceanis-1.8.5/oceanis/R/sf_depm.R | 2 oceanis-1.8.5/oceanis/R/sf_fram.R | 2 oceanis-1.8.5/oceanis/R/sf_pays973.R | 4 oceanis-1.8.5/oceanis/R/sf_paysm.R | 4 oceanis-1.8.5/oceanis/R/sf_reg01.R | 2 oceanis-1.8.5/oceanis/R/sf_reg02.R | 2 oceanis-1.8.5/oceanis/R/sf_reg03.R | 4 oceanis-1.8.5/oceanis/R/sf_reg04.R | 4 oceanis-1.8.5/oceanis/R/sf_reg06.R | 4 oceanis-1.8.5/oceanis/R/sf_regm.R | 2 oceanis-1.8.5/oceanis/R/shiny_classes.R | 28 oceanis-1.8.5/oceanis/R/shiny_classes_ronds.R | 28 oceanis-1.8.5/oceanis/R/shiny_joignantes.R | 19 oceanis-1.8.5/oceanis/R/shiny_oursins.R | 16 oceanis-1.8.5/oceanis/R/shiny_ronds.R | 20 oceanis-1.8.5/oceanis/R/shiny_ronds_classes.R | 28 oceanis-1.8.5/oceanis/R/shiny_saphirs.R | 16 oceanis-1.8.5/oceanis/R/shiny_typo.R | 16 oceanis-1.8.5/oceanis/build/vignette.rds |binary oceanis-1.8.5/oceanis/data/depm.rda |binary oceanis-1.8.5/oceanis/data/fram.rda |binary oceanis-1.8.5/oceanis/data/regm.rda |binary oceanis-1.8.5/oceanis/inst/doc/integration_shiny.html | 226 oceanis-1.8.5/oceanis/inst/doc/oceanis.R | 15 oceanis-1.8.5/oceanis/inst/doc/oceanis.Rmd | 15 oceanis-1.8.5/oceanis/inst/doc/oceanis.html | 4484 +++++++++- oceanis-1.8.5/oceanis/inst/extdata/dep_francemetro_2018.dbf |binary oceanis-1.8.5/oceanis/inst/extdata/dep_francemetro_2018.shp |binary oceanis-1.8.5/oceanis/inst/extdata/dep_francemetro_2018.shx |binary oceanis-1.8.5/oceanis/inst/extdata/francemetro_2018.dbf |binary oceanis-1.8.5/oceanis/inst/extdata/francemetro_2018.shp |binary oceanis-1.8.5/oceanis/inst/extdata/francemetro_2018.shx |binary oceanis-1.8.5/oceanis/inst/extdata/merf_2018.dbf |binary oceanis-1.8.5/oceanis/inst/extdata/merf_2018.prj | 2 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oceanis-1.8.5/oceanis/inst/extdata/reg_francemetro_2018.shx |binary oceanis-1.8.5/oceanis/man/leaflet_.Rd | 2 oceanis-1.8.5/oceanis/vignettes/images/export_qgis_canevas.PNG |binary oceanis-1.8.5/oceanis/vignettes/images/export_qgis_mep.PNG |binary oceanis-1.8.5/oceanis/vignettes/images/shiny_ac_rp.PNG |binary oceanis-1.8.5/oceanis/vignettes/images/shiny_fj.PNG |binary oceanis-1.8.5/oceanis/vignettes/oceanis.Rmd | 15 123 files changed, 5324 insertions(+), 479 deletions(-)
Title: Knowledge Space Theory
Description: Knowledge space theory by Doignon and Falmagne (1999)
<doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical
framework, which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The 'kst' package provides
basic functionalities to generate, handle, and manipulate knowledge
structures and knowledge spaces.
Author: Christina Stahl [aut],
David Meyer [aut],
Cord Hockemeyer [aut, cre]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between kst versions 0.5-2 dated 2019-04-07 and 0.5-3 dated 2022-07-13
Changelog | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 15 +++++++++------ NAMESPACE | 3 +++ R/as.relation.kspace.R |only R/plot.kspace.R |only R/reduction.kspace.R |only build/vignette.rds |binary inst/doc/kst.R | 1 - inst/doc/kst.pdf |binary 10 files changed, 20 insertions(+), 11 deletions(-)
Title: A Framework for Robust Shiny Applications
Description: An opinionated framework for building a production-ready
'Shiny' application. This package contains a series of tools for
building a robust 'Shiny' application from start to finish.
Author: Colin Fay [cre, aut] ,
Vincent Guyader [aut] ,
Sebastien Rochette [aut] ,
Cervan Girard [aut] ,
Novica Nakov [ctb],
David Granjon [ctb],
Arthur Breant [ctb],
Antoine Languillaume [ctb],
ThinkR [cph]
Maintainer: Colin Fay <contact@colinfay.me>
Diff between golem versions 0.3.2 dated 2022-03-04 and 0.3.3 dated 2022-07-13
golem-0.3.2/golem/man/figures |only golem-0.3.3/golem/DESCRIPTION | 75 +- golem-0.3.3/golem/MD5 | 57 - golem-0.3.3/golem/NAMESPACE | 3 golem-0.3.3/golem/NEWS.md | 10 golem-0.3.3/golem/R/add_dockerfiles.R | 411 ++++++++----- golem-0.3.3/golem/R/add_dockerfiles_renv.R |only golem-0.3.3/golem/R/utils.R | 4 golem-0.3.3/golem/README.md | 64 -- golem-0.3.3/golem/build/vignette.rds |binary golem-0.3.3/golem/inst/doc/a_start.Rmd | 4 golem-0.3.3/golem/inst/doc/a_start.html | 209 ++++-- golem-0.3.3/golem/inst/doc/b_dev.Rmd | 4 golem-0.3.3/golem/inst/doc/b_dev.html | 219 ++++-- golem-0.3.3/golem/inst/doc/c_deploy.R | 26 golem-0.3.3/golem/inst/doc/c_deploy.Rmd | 76 ++ golem-0.3.3/golem/inst/doc/c_deploy.html | 165 +++-- golem-0.3.3/golem/inst/doc/d_js.html | 101 ++- golem-0.3.3/golem/inst/doc/e_config.html | 185 +++-- golem-0.3.3/golem/inst/doc/f_extending_golem.html | 240 ++++--- golem-0.3.3/golem/inst/doc/z_golem_cheatsheet.html | 21 golem-0.3.3/golem/inst/shinyexample/dev/02_dev.R | 1 golem-0.3.3/golem/inst/shinyexample/dev/03_deploy.R | 6 golem-0.3.3/golem/man/dockerfiles.Rd | 106 +++ golem-0.3.3/golem/man/document_and_reload.Rd | 2 golem-0.3.3/golem/tests/testthat/helper-config.R | 13 golem-0.3.3/golem/tests/testthat/test-add_deploy_helpers.R | 52 - golem-0.3.3/golem/tests/testthat/test-renv_stuff.R |only golem-0.3.3/golem/vignettes/a_start.Rmd | 4 golem-0.3.3/golem/vignettes/b_dev.Rmd | 4 golem-0.3.3/golem/vignettes/c_deploy.Rmd | 76 ++ 31 files changed, 1450 insertions(+), 688 deletions(-)
Title: Permutation Tests for Time Series Data
Description: Helps you determine the analysis window to use when analyzing densely-sampled
time-series data, such as EEG data, using permutation testing (Maris & Oostenveld, 2007)
<doi:10.1016/j.jneumeth.2007.03.024>. These permutation tests can help identify the timepoints
where significance of an effect begins and ends, and the results can be plotted in various
types of heatmap for reporting. Mixed-effects models are supported using an implementation of
the approach by Lee & Braun (2012) <doi:10.1111/j.1541-0420.2011.01675.x>.
Author: Cesko C. Voeten [aut, cre]
Maintainer: Cesko C. Voeten <cvoeten@gmail.com>
Diff between permutes versions 2.5 dated 2022-06-15 and 2.6 dated 2022-07-13
DESCRIPTION | 6 +- MD5 | 14 +++--- R/buildmer.R | 8 +-- build/vignette.rds |binary inst/doc/buildmer.R | 102 +++++++++++++++++++++++----------------------- inst/doc/buildmer.pdf |binary inst/doc/permutes.R | 110 +++++++++++++++++++++++++------------------------- inst/doc/permutes.pdf |binary 8 files changed, 120 insertions(+), 120 deletions(-)
Title: Automatic Colors for Multi-Dimensional Data
Description: Assign distinct colors to arbitrary multi-dimensional data, considering its structure.
Author: Oren Ben-Kiki [aut, cre],
Weizmann Institute of Science [cph]
Maintainer: Oren Ben-Kiki <oren@ben-kiki.org>
Diff between chameleon versions 0.2-1 dated 2022-07-13 and 0.2-2 dated 2022-07-13
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 2 +- R/chameleon.R | 16 ++++++++-------- inst/doc/examples.html | 6 +++--- 5 files changed, 19 insertions(+), 19 deletions(-)
Title: Call R from R
Description: It is sometimes useful to perform a computation in a separate
R process, without affecting the current R process at all. This
packages does exactly that.
Author: Gabor Csardi [aut, cre, cph] ,
Winston Chang [aut],
RStudio [cph, fnd],
Mango Solutions [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between callr versions 3.7.0 dated 2021-04-20 and 3.7.1 dated 2022-07-13
callr-3.7.0/callr/man/callr.Rd |only callr-3.7.1/callr/DESCRIPTION | 32 callr-3.7.1/callr/MD5 | 118 - callr-3.7.1/callr/NAMESPACE | 3 callr-3.7.1/callr/NEWS.md | 13 callr-3.7.1/callr/R/aaa-rstudio-detect.R |only callr-3.7.1/callr/R/callr-package.R |only callr-3.7.1/callr/R/error.R | 55 callr-3.7.1/callr/R/errors.R | 1129 ++++++++----- callr-3.7.1/callr/R/eval.R | 13 callr-3.7.1/callr/R/load-client.R | 4 callr-3.7.1/callr/R/package.R | 9 callr-3.7.1/callr/R/r-session.R | 62 callr-3.7.1/callr/R/result.R | 5 callr-3.7.1/callr/R/script.R | 63 callr-3.7.1/callr/R/setup.R | 31 callr-3.7.1/callr/R/x-client.R | 2 callr-3.7.1/callr/README.md | 216 -- callr-3.7.1/callr/inst/WORDLIST | 7 callr-3.7.1/callr/man/callr-package.Rd |only callr-3.7.1/callr/man/figures |only callr-3.7.1/callr/man/r.Rd | 27 callr-3.7.1/callr/man/r_bg.Rd | 12 callr-3.7.1/callr/man/r_copycat.Rd | 12 callr-3.7.1/callr/man/r_process.Rd | 134 - callr-3.7.1/callr/man/r_session.Rd | 210 +- callr-3.7.1/callr/man/r_session_debug.Rd | 11 callr-3.7.1/callr/man/r_vanilla.Rd | 12 callr-3.7.1/callr/man/rcmd_process.Rd | 130 - callr-3.7.1/callr/man/rscript_process.Rd | 130 - callr-3.7.1/callr/tests/testthat.R | 2 callr-3.7.1/callr/tests/testthat/test-bugs.R | 2 callr-3.7.1/callr/tests/testthat/test-callback.R | 2 callr-3.7.1/callr/tests/testthat/test-clean-subprocess.R | 2 callr-3.7.1/callr/tests/testthat/test-error.R | 61 callr-3.7.1/callr/tests/testthat/test-eval.R | 21 callr-3.7.1/callr/tests/testthat/test-libpath.R | 2 callr-3.7.1/callr/tests/testthat/test-load-client.R |only callr-3.7.1/callr/tests/testthat/test-messages.R | 2 callr-3.7.1/callr/tests/testthat/test-options.R | 2 callr-3.7.1/callr/tests/testthat/test-presets.R | 2 callr-3.7.1/callr/tests/testthat/test-quit.R | 2 callr-3.7.1/callr/tests/testthat/test-r-bg.R | 2 callr-3.7.1/callr/tests/testthat/test-r-process.R | 2 callr-3.7.1/callr/tests/testthat/test-r-session-messages.R | 2 callr-3.7.1/callr/tests/testthat/test-r-session.R | 6 callr-3.7.1/callr/tests/testthat/test-rcmd-bg.R | 2 callr-3.7.1/callr/tests/testthat/test-rcmd-process.R | 2 callr-3.7.1/callr/tests/testthat/test-rcmd.R | 4 callr-3.7.1/callr/tests/testthat/test-rscript.R | 4 callr-3.7.1/callr/tests/testthat/test-spelling.R | 2 callr-3.7.1/callr/tests/testthat/test-timeout.R | 2 callr-3.7.1/callr/tests/testthat/test-utils.R | 2 53 files changed, 1485 insertions(+), 1085 deletions(-)
Title: Stepwise Elimination and Term Reordering for Mixed-Effects
Regression
Description: Finds the largest possible regression model that will still converge
for various types of regression analyses (including mixed models and generalized
additive models) and then optionally performs stepwise elimination similar to the
forward and backward effect-selection methods in SAS, based on the change in
log-likelihood or its significance, Akaike's Information Criterion, the Bayesian
Information Criterion, the explained deviance, or the F-test of the change in R².
Author: Cesko C. Voeten [aut, cre]
Maintainer: Cesko C. Voeten <cvoeten@gmail.com>
Diff between buildmer versions 2.5 dated 2022-06-14 and 2.6 dated 2022-07-13
ChangeLog | 194 +-- DESCRIPTION | 6 MD5 | 41 NAMESPACE | 6 R/buildmer-S4.R | 2 R/buildmer-private.R | 18 R/buildmer.R | 55 R/control.R | 51 R/directions.R | 2 R/elim.R | 6 R/fitters.R | 33 R/package.R | 1 build/vignette.rds |binary inst/doc/buildmer.R | 432 +++---- inst/doc/buildmer.html | 1928 ++++++++++++++++----------------- man/buildcustom.Rd | 4 man/buildgam.Rd | 2 man/buildmer.Rd | 9 man/buildmer.nb.Rd |only man/buildmerControl.Rd | 16 tests/testthat/data/buildmer.nb.fe.csv |only tests/testthat/data/buildmer.nb.re.csv |only tests/testthat/test-buildmer.nb.R |only tests/testthat/test-include.R |only 24 files changed, 1461 insertions(+), 1345 deletions(-)
Title: Modules to Import and Manipulate Data in 'Shiny'
Description: 'Shiny' modules to import data into an application or 'addin'
from various sources, and to manipulate them after that.
Author: Victor Perrier [aut, cre, cph],
Fanny Meyer [aut],
Zauad Shahreer Abeer [aut],
Eduard Szoecs [ctb]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between datamods versions 1.3.2 dated 2022-05-06 and 1.3.3 dated 2022-07-13
DESCRIPTION | 6 MD5 | 39 - NEWS.md | 161 ++-- R/filter-data.R | 56 + R/update-variables.R | 1254 ++++++++++++++++++------------------- R/validation.R | 646 +++++++++---------- build/vignette.rds |binary inst/assets/js/datamods.js | 172 ++--- inst/doc/datamods.R | 272 ++++---- inst/doc/datamods.html | 938 +++++++++++++++++---------- inst/doc/i18n.R | 126 +-- inst/doc/i18n.html | 806 ++++++++++++++--------- inst/extdata/pop-fra-dep.txt | 202 ++--- inst/i18n/fr.csv | 124 +-- inst/i18n/mk.csv | 124 +-- inst/i18n/pt.csv | 124 +-- inst/i18n/tr.csv |only man/filter-data.Rd | 22 tests/testthat/test-import-file.R | 46 - tests/testthat/test-import-modal.R | 32 tests/testthat/test-validation.R | 50 - 21 files changed, 2844 insertions(+), 2356 deletions(-)
Title: Automatic Colors for Multi-Dimensional Data
Description: Assign distinct colors to arbitrary multi-dimensional data, considering its structure.
Author: Oren Ben-Kiki [aut, cre],
Weizmann Institute of Science [cph]
Maintainer: Oren Ben-Kiki <oren@ben-kiki.org>
Diff between chameleon versions 0.2-0 dated 2021-08-03 and 0.2-1 dated 2022-07-13
DESCRIPTION | 10 +- MD5 | 14 ++-- NEWS | 2 R/chameleon.R | 12 +++ build/vignette.rds |binary data/pbmc.rda |binary inst/doc/examples.html | 165 +++++++++++++++++++++++++++---------------------- man/pbmc.Rd | 4 - 8 files changed, 121 insertions(+), 86 deletions(-)
Title: Easily Install and Load the 'Tidymodels' Packages
Description: The tidy modeling "verse" is a collection of packages for
modeling and statistical analysis that share the underlying design
philosophy, grammar, and data structures of the tidyverse.
Author: Max Kuhn [aut, cre] ,
Hadley Wickham [aut],
RStudio [cph, fnd]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between tidymodels versions 0.2.0 dated 2022-03-19 and 1.0.0 dated 2022-07-13
DESCRIPTION | 29 ++--- MD5 | 10 - NEWS.md | 4 build/vignette.rds |binary inst/doc/Tags.html | 242 +++++++++++++++++++++++++++++++++++++++++++++- man/tidymodels-package.Rd | 4 6 files changed, 264 insertions(+), 25 deletions(-)
Title: WHOIS Server Querying
Description: Queries data from WHOIS servers.
Author: Brad Cable
Maintainer: Brad Cable <brad@bcable.net>
Diff between Rwhois versions 1.0.11 dated 2022-07-02 and 1.0.12 dated 2022-07-13
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/functions.R | 10 ++-------- README.md | 2 +- 4 files changed, 10 insertions(+), 16 deletions(-)
Title: Robust Mixture Model
Description: Algorithms for estimating robustly the parameters of a Gaussian, Student, or Laplace Mixture Model.
Author: Antoine Godichon-Baggioni [aut, cre, cph],
Stephane Robin [aut]
Maintainer: Antoine Godichon-Baggioni <antoine.godichon_baggioni@upmc.fr>
Diff between RGMM versions 0.1.0 dated 2022-06-24 and 1.1.0 dated 2022-07-13
DESCRIPTION | 9 MD5 | 21 - NAMESPACE | 15 R/Final_functions.R | 811 +++++++++++++++++++++++++++++----------- R/Laplace_codes_fonctions_GMM.R | 149 ++++--- R/Student_codes_fonctions_GMM.R | 124 +++--- R/codes_fonctions_GMM.R | 123 +++--- build/partial.rdb |binary man/Gen_MM.Rd | 108 ++--- man/RGMM-package.Rd | 52 +- man/RMMplot.Rd |only man/RobMM.Rd | 152 +++---- 12 files changed, 1038 insertions(+), 526 deletions(-)
Title: Less Code, More Results
Description: Each function accomplishes the work of several or more standard R functions. For example, two function calls, Read() and CountAll(), read the data and generate summary statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for descriptive statistics, a comprehensive regression analysis, analysis of variance and t-test, visualizations including the Violin/Box/Scatter plot for a numerical variable, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function call, variable labels, color themes, Trellis graphics, and comprehensive summary statistics via pivot tables. Also includes a confirmatory factor analysis of multiple indicator measurement models, pedagogical routines for data simulation such as for the Central Limit Theorem, and generation and rendering of R markdown instructions for interpretative output.
Author: David Gerbing, The School of Business, Portland State University
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 4.2.0 dated 2022-06-03 and 4.2.2 dated 2022-07-13
lessR-4.2.0/lessR/NEWS |only lessR-4.2.2/lessR/DESCRIPTION | 8 lessR-4.2.2/lessR/MD5 | 135 ++--- lessR-4.2.2/lessR/R/ANOVAz1.R | 24 - lessR-4.2.2/lessR/R/BarChart.R | 18 lessR-4.2.2/lessR/R/LineChart.R | 6 lessR-4.2.2/lessR/R/Logit.R | 2 lessR-4.2.2/lessR/R/Plot.R | 32 + lessR-4.2.2/lessR/R/Read.R | 5 lessR-4.2.2/lessR/R/Regression.R | 6 lessR-4.2.2/lessR/R/av.Rmd.R | 4 lessR-4.2.2/lessR/R/bc.zmain.R | 22 lessR-4.2.2/lessR/R/bx.zstats.R | 2 lessR-4.2.2/lessR/R/details.R | 4 lessR-4.2.2/lessR/R/dn.zmain.R | 2 lessR-4.2.2/lessR/R/dpmat.zmain.R | 32 - lessR-4.2.2/lessR/R/hst.zmain.R | 25 - lessR-4.2.2/lessR/R/lc.zmain.R | 2 lessR-4.2.2/lessR/R/logit.z4Pred.R | 42 - lessR-4.2.2/lessR/R/logit.z5Confuse.R | 2 lessR-4.2.2/lessR/R/pivot.R | 49 +- lessR-4.2.2/lessR/R/plt.zbck.R |only lessR-4.2.2/lessR/R/plt.zbins.R |only lessR-4.2.2/lessR/R/plt.zfit.R | 42 - lessR-4.2.2/lessR/R/plt.zlattice.R | 92 +-- lessR-4.2.2/lessR/R/plt.zmain.R | 230 +++++---- lessR-4.2.2/lessR/R/plt.zmarg.R |only lessR-4.2.2/lessR/R/plt.ztxt.R | 10 lessR-4.2.2/lessR/R/reg.z3resfitResidual.R | 2 lessR-4.2.2/lessR/R/reg.z3txtResidual.R | 3 lessR-4.2.2/lessR/R/reg.z4Pred.R | 2 lessR-4.2.2/lessR/R/reg.z5Plot.R | 9 lessR-4.2.2/lessR/R/tt.z2group.R | 4 lessR-4.2.2/lessR/R/zzz.R | 202 +++----- lessR-4.2.2/lessR/build/vignette.rds |binary lessR-4.2.2/lessR/data/dataStockPrice.rda |binary lessR-4.2.2/lessR/inst/NEWS.Rd |only lessR-4.2.2/lessR/inst/doc/BarChart.html | 36 - lessR-4.2.2/lessR/inst/doc/Customize.Rmd | 2 lessR-4.2.2/lessR/inst/doc/Customize.html | 18 lessR-4.2.2/lessR/inst/doc/Extract.html | 22 lessR-4.2.2/lessR/inst/doc/Histogram.html | 20 lessR-4.2.2/lessR/inst/doc/Means.html | 18 lessR-4.2.2/lessR/inst/doc/Plot.R | 10 lessR-4.2.2/lessR/inst/doc/Plot.Rmd | 22 lessR-4.2.2/lessR/inst/doc/Plot.html | 229 +++++---- lessR-4.2.2/lessR/inst/doc/Proportions.html | 4 lessR-4.2.2/lessR/inst/doc/Regression.R | 4 lessR-4.2.2/lessR/inst/doc/Regression.Rmd | 10 lessR-4.2.2/lessR/inst/doc/Regression.html | 97 ++-- lessR-4.2.2/lessR/inst/doc/Time.R | 2 lessR-4.2.2/lessR/inst/doc/Time.Rmd | 2 lessR-4.2.2/lessR/inst/doc/Time.html | 89 +-- lessR-4.2.2/lessR/inst/doc/pivot.R | 16 lessR-4.2.2/lessR/inst/doc/pivot.Rmd | 77 ++- lessR-4.2.2/lessR/inst/doc/pivot.html | 400 +++++++++-------- lessR-4.2.2/lessR/inst/doc/utilities.html | 12 lessR-4.2.2/lessR/inst/shiny_examples/ScatterPlot/ui.R | 2 lessR-4.2.2/lessR/man/BarChart.Rd | 5 lessR-4.2.2/lessR/man/Nest.Rd | 2 lessR-4.2.2/lessR/man/Plot.Rd | 20 lessR-4.2.2/lessR/man/Regression.Rd | 4 lessR-4.2.2/lessR/man/corEFA.Rd | 2 lessR-4.2.2/lessR/man/dataStockPrice.Rd | 6 lessR-4.2.2/lessR/man/extractData.Rd | 2 lessR-4.2.2/lessR/man/pivot.Rd | 33 - lessR-4.2.2/lessR/vignettes/Customize.Rmd | 2 lessR-4.2.2/lessR/vignettes/Plot.Rmd | 22 lessR-4.2.2/lessR/vignettes/Regression.Rmd | 10 lessR-4.2.2/lessR/vignettes/Time.Rmd | 2 lessR-4.2.2/lessR/vignettes/pivot.Rmd | 77 ++- 71 files changed, 1196 insertions(+), 1101 deletions(-)
Title: Extending 'gt' for Beautiful HTML Tables
Description: Provides additional functions for creating beautiful tables
with 'gt'. The functions are generally wrappers around boilerplate or
adding opinionated niche capabilities and helpers functions.
Author: Thomas Mock [aut, cre, cph],
Daniel D. Sjoberg [ctb]
Maintainer: Thomas Mock <j.thomasmock@gmail.com>
Diff between gtExtras versions 0.4.0 dated 2022-06-09 and 0.4.1 dated 2022-07-13
DESCRIPTION | 20 +- MD5 | 200 +++++++++++----------- NAMESPACE | 2 NEWS.md | 26 ++ R/fmt_symbol_first.R | 4 R/fontawesome-icons.R | 29 +-- R/get_row_index.R |only R/gt-bar-html.R | 5 R/gtExtras-package.R | 3 R/gt_add_divider.R | 6 R/gt_color_box.R | 22 +- R/gt_color_rows.R | 4 R/gt_highlight_cols.R | 8 R/gt_highlight_rows.R | 5 R/gt_hulk_color.R | 5 R/gt_image_rows.R | 5 R/gt_img_circle.R | 10 - R/gt_index.R | 28 +-- R/gt_plt_conf_int.R | 21 +- R/gt_plt_dist.R | 14 - R/gt_plt_percentile_dot.R | 4 R/gt_plt_point.R | 4 R/gt_plt_sparkline.R | 30 +++ R/gt_theme_538.R | 5 R/gt_theme_pff.R |only R/gt_vendor.R | 296 ++++++++++++++++++++++++++++++++- R/gtsave_extra.R | 4 R/html-helpers.R | 15 + R/img_header.R | 27 ++- R/last_row_id.R | 50 ----- R/merge_and_stack.R | 35 ++- R/pad_fn.R | 2 R/sysdata.rda |only R/tab_style_by_grp.R | 36 +++- R/two-column-layouts.R | 49 +++-- R/utils.R | 15 + README.md | 148 +++++++++------- man/add_text_img.Rd | 1 man/fa_icon_repeat.Rd | 1 man/figures/color_box.png |binary man/figures/ggplot2-sparkline.png |binary man/figures/grouped-tab-index.png |only man/figures/grouped-tab-row4.png |only man/figures/grouped-tab.png |only man/figures/gt_badge.png |binary man/figures/gt_plt_dist.png |only man/figures/gt_theme_pff.png |only man/figures/img_header.png |only man/figures/ungrouped-tab.png |only man/fmt_pad_num.Rd | 1 man/fmt_pct_extra.Rd | 1 man/fmt_symbol_first.Rd | 1 man/generate_df.Rd | 1 man/get_row_index.Rd |only man/gtExtras-package.Rd | 2 man/gt_add_divider.Rd | 19 +- man/gt_badge.Rd | 17 + man/gt_color_box.Rd | 31 ++- man/gt_color_rows.Rd | 36 ++-- man/gt_double_table.Rd | 25 ++ man/gt_duplicate_column.Rd | 1 man/gt_fa_column.Rd | 30 ++- man/gt_fa_rank_change.Rd | 15 + man/gt_fa_rating.Rd | 24 +- man/gt_fa_repeats.Rd | 19 +- man/gt_highlight_cols.Rd | 18 +- man/gt_highlight_rows.Rd | 26 +- man/gt_hulk_col_numeric.Rd | 31 +-- man/gt_img_circle.Rd | 33 ++- man/gt_img_rows.Rd | 24 +- man/gt_index.Rd | 1 man/gt_label_details.Rd | 6 man/gt_merge_stack.Rd | 41 +++- man/gt_plt_bar_pct.Rd | 23 +- man/gt_plt_bullet.Rd | 3 man/gt_plt_conf_int.Rd | 31 ++- man/gt_plt_dist.Rd | 23 +- man/gt_plt_dot.Rd | 3 man/gt_plt_percentile.Rd | 18 +- man/gt_plt_point.Rd | 18 +- man/gt_plt_sparkline.Rd | 23 +- man/gt_theme_538.Rd | 20 +- man/gt_theme_dark.Rd | 3 man/gt_theme_dot_matrix.Rd | 3 man/gt_theme_espn.Rd | 3 man/gt_theme_excel.Rd | 3 man/gt_theme_guardian.Rd | 3 man/gt_theme_nytimes.Rd | 3 man/gt_theme_pff.Rd |only man/gt_two_column_layout.Rd | 42 ++-- man/gtsave_extra.Rd | 1 man/img_header.Rd | 58 +++++- man/pad_fn.Rd | 1 man/tab_style_by_grp.Rd | 24 +- tests/testthat/test-fmt_pad_num.R | 10 - tests/testthat/test-fmt_symbol_first.R | 29 ++- tests/testthat/test-gt_color_box.R | 46 +++-- tests/testthat/test-gt_image_rows.R | 1 tests/testthat/test-gt_img_circle.R | 2 tests/testthat/test-gt_plt_dist.R | 88 +++++---- tests/testthat/test-gt_plt_sparkline.R | 2 tests/testthat/test-gt_summary_table.R | 69 +++---- tests/testthat/test-gt_text_img.R | 2 tests/testthat/test-html-helpers.R | 1 tests/testthat/test-icon_fun.R | 1 tests/testthat/test-img_header.R | 3 tests/testthat/test-utils.R | 1 107 files changed, 1377 insertions(+), 726 deletions(-)
Title: Versatile Curation of Table Metadata
Description: A YAML-based
mechanism for working with table metadata. Supports
compact syntax for creating, modifying, viewing, exporting,
importing, displaying, and plotting metadata coded as column
attributes. The 'yamlet' dialect is valid 'YAML' with
defaults and conventions chosen to improve readability.
See ?yamlet, ?decorate.data.frame and ?modify.default.
See ?read_yamlet ?write_yamlet, ?io_csv, and ?ggplot.decorated.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between yamlet versions 0.8.7 dated 2022-04-18 and 0.9.2 dated 2022-07-13
DESCRIPTION | 12 MD5 | 525 +++++++++++++++++++++++------------ NAMESPACE | 71 ++++ R/canonical.R | 1 R/classified.R | 157 +++++++++- R/decorate.R | 41 ++ R/desolve.R | 58 +++ R/dvec.R |only R/explicit_guide.R | 134 ++++++++ R/ggplot.R | 81 +++-- R/ggplot_ggready.R | 20 - R/io_csv.R | 8 R/io_res.R | 47 ++- R/io_table.R | 8 R/merge.R | 1 R/resolve.R | 31 ++ R/unclassified.R | 27 + R/vec_cast.R |only R/vec_ptype2.R |only R/yamlet.R | 17 - build/vignette.rds |binary inst/doc/yamlet-introduction.html | 455 +++++++++++++++++++++++++++--- inst/extdata/dm.xpt.gz |only inst/extdata/ex.xpt.gz |only inst/extdata/pc.R |only inst/extdata/pc.csv |only inst/extdata/pc.yaml |only inst/extdata/phenobarb.R |only inst/extdata/quinidine.R |only inst/extdata/readme.txt |only inst/extdata/vs.xpt.gz |only inst/extdata/xanomeline.R |only inst/extdata/xanomeline.csv.gz |only inst/extdata/xanomeline.yaml |only man/alias.data.frame.Rd | 86 ++--- man/anti_join.decorated.Rd | 122 +++----- man/append_units.Rd | 78 ++--- man/append_units.data.frame.Rd | 74 ++-- man/append_units.default.Rd | 124 ++++---- man/arbitrate.NULL.Rd |only man/arbitrate.Rd |only man/arbitrate.default.Rd |only man/arbitrate.list.Rd |only man/arbitrate.namedList.Rd |only man/arrange.decorated.Rd | 74 ++-- man/as.character.yam.Rd | 82 ++--- man/as.character.yamlet.Rd | 102 +++--- man/as.data.frame.dvec.Rd |only man/as.data.frame.yamlet.Rd | 165 +++++------ man/as.integer.classified.Rd | 122 +++++--- man/as_decorated.Rd | 72 ++-- man/as_decorated.default.Rd | 76 ++--- man/as_dvec.Rd |only man/as_dvec.character.Rd |only man/as_dvec.complex.Rd |only man/as_dvec.dvec.Rd |only man/as_dvec.integer.Rd |only man/as_dvec.logical.Rd |only man/as_dvec.numeric.Rd |only man/as_dvec.units.Rd |only man/as_spork.symbolic_units.Rd | 86 ++--- man/as_spork.unit_string.Rd | 70 ++-- man/as_spork.units.Rd | 72 ++-- man/as_unit_string.Rd | 76 ++--- man/as_unit_string.character.Rd | 68 ++-- man/as_unit_string.factor.Rd | 70 ++-- man/as_unit_string.symbolic_units.Rd | 94 +++--- man/as_unit_string.units.Rd | 76 ++--- man/as_units.dvec.Rd |only man/as_yam.Rd | 56 +-- man/as_yam.character.Rd | 100 +++--- man/as_yam.yamlet.Rd | 90 +++--- man/as_yamlet.Rd | 86 ++--- man/as_yamlet.character.Rd | 126 ++++---- man/as_yamlet.data.frame.Rd | 76 ++--- man/as_yamlet.list.Rd | 74 ++-- man/as_yamlet.yam.Rd | 92 +++--- man/as_yamlet.yamlet.Rd | 74 ++-- man/c.classified.Rd | 103 +++--- man/c.dvec.Rd |only man/canonical.Rd | 54 +-- man/canonical.decorated.Rd | 143 ++++----- man/canonical.yamlet.Rd | 97 +++--- man/cell_value.Rd | 38 +- man/classified.Rd | 81 ++--- man/classified.classified.Rd |only man/classified.data.frame.Rd | 152 +++++----- man/classified.default.Rd | 135 ++++----- man/classified.dvec.Rd |only man/conditionalize.Rd | 58 +-- man/conditionalize.data.frame.Rd | 146 ++++----- man/decorate.Rd | 84 ++--- man/decorate.character.Rd | 239 ++++++++------- man/decorate.data.frame.Rd | 170 ++++++----- man/decorate.list.Rd | 111 ++++--- man/decorations.Rd | 78 ++--- man/decorations.data.frame.Rd | 102 +++--- man/desolve.Rd | 65 ++-- man/desolve.classified.Rd |only man/desolve.decorated.Rd | 124 ++++---- man/desolve.dvec.Rd |only man/encode.yamlet.Rd | 72 ++-- man/explicit_guide.Rd | 68 ++-- man/explicit_guide.data.frame.Rd | 158 ++++++---- man/explicit_guide.dvec.Rd |only man/explicit_guide.yamlet.Rd | 132 ++++---- man/figures |only man/filter.decorated.Rd | 108 +++---- man/footnote.decorated.Rd | 92 +++--- man/format.dvec.Rd |only man/full_join.decorated.Rd | 130 ++++---- man/gather.decorated.Rd | 104 +++--- man/ggplot.decorated.Rd | 289 +++++++++---------- man/ggplot.ggready.Rd | 72 ++-- man/ggplot_build.decorated_ggplot.Rd | 64 ++-- man/ggplot_build.ggready_ggplot.Rd | 62 ++-- man/ggready.Rd | 138 ++++----- man/ggready.data.frame.Rd | 76 ++--- man/ggready.decorated.Rd | 82 ++--- man/group_by.decorated.Rd | 102 +++--- man/implicit_guide.Rd | 68 ++-- man/implicit_guide.data.frame.Rd | 114 +++---- man/implicit_guide.dvec.Rd |only man/infer_guide.Rd | 140 ++++----- man/inner_join.decorated.Rd | 130 ++++---- man/io_csv.Rd | 93 +++--- man/io_csv.character.Rd | 138 ++++----- man/io_csv.data.frame.Rd | 166 +++++------ man/io_res.Rd | 80 ++--- man/io_res.character.Rd | 148 +++++---- man/io_res.decorated.Rd |only man/io_table.Rd | 95 +++--- man/io_table.character.Rd | 138 ++++----- man/io_table.data.frame.Rd | 164 +++++----- man/io_yamlet.Rd | 95 +++--- man/io_yamlet.character.Rd | 146 ++++----- man/io_yamlet.data.frame.Rd | 178 ++++++----- man/io_yamlet.yamlet.Rd | 129 ++++---- man/isConditional.default.Rd | 52 +-- man/isConditional.list.Rd | 64 ++-- man/isLevels.character.Rd | 62 ++-- man/isLevels.default.Rd | 52 +-- man/is_parseable.Rd | 58 +-- man/is_parseable.default.Rd | 123 ++++---- man/left_join.decorated.Rd | 130 ++++---- man/length.dvec.Rd |only man/list2encoding.Rd | 64 ++-- man/merge.decorated.Rd | 77 ++--- man/mimic.Rd | 60 ++-- man/mimic.classified.Rd | 140 ++++----- man/mimic.default.Rd | 123 ++++---- man/modify.Rd | 64 ++-- man/modify.default.Rd | 239 ++++++++------- man/mutate.decorated.Rd | 92 +++--- man/named.Rd | 60 ++-- man/names-set-.decorated.Rd | 72 ++-- man/parsimonious.Rd | 54 +-- man/parsimonious.default.Rd | 50 +-- man/parsimonious.list.Rd | 158 +++++----- man/print.decorated_ggplot.Rd | 74 ++-- man/print.decorated_xtable.Rd | 78 ++--- man/print.dvec.Rd |only man/print.ggready_ggplot.Rd | 66 ++-- man/print.yamlet.Rd | 70 ++-- man/promote.Rd | 64 ++-- man/promote.data.frame.Rd | 64 ++-- man/promote.default.Rd | 34 +- man/promote.list.Rd | 177 +++++------ man/proxy.Rd | 58 +-- man/proxy.factor.Rd | 80 ++--- man/read_yamlet.Rd | 127 ++++---- man/reconcile.Rd |only man/reconcile.list.Rd |only man/redecorate.Rd | 91 +++--- man/reexports.Rd | 57 ++- man/rescale.dvec.Rd |only man/resolve.Rd | 65 ++-- man/resolve.decorated.Rd | 124 ++++---- man/resolve.dvec.Rd |only man/right_join.decorated.Rd | 130 ++++---- man/scale_type.dvec.Rd |only man/select.decorated.Rd | 78 ++--- man/selected.Rd | 64 ++-- man/selected.default.Rd | 123 ++++---- man/semi_join.decorated.Rd | 122 +++----- man/singularity.Rd | 126 ++++---- man/slice.decorated.Rd | 94 +++--- man/sub-.classified.Rd | 85 ++--- man/sub-.decorated.Rd | 130 ++++---- man/sub-.dvec.Rd |only man/sub-.unit_string.Rd | 80 ++--- man/sub-.yamlet.Rd | 76 ++--- man/sub-sub-.classified.Rd | 85 ++--- man/sub-sub-.decorated.Rd | 66 ++-- man/sub-sub-.dvec.Rd |only man/sub-sub-.unit_string.Rd | 80 ++--- man/sub-subset-.classified.Rd | 85 ++--- man/sub-subset-.decorated.Rd | 72 ++-- man/sub-subset-.dvec.Rd |only man/sub_units.Rd | 148 ++++----- man/subset-.classified.Rd | 85 ++--- man/subset-.decorated.Rd | 70 ++-- man/subset-.dvec.Rd |only man/summarise.decorated.Rd | 88 ++--- man/summarize.decorated.Rd | 88 ++--- man/to_yamlet.NULL.Rd | 64 ++-- man/to_yamlet.Rd | 64 ++-- man/to_yamlet.character.Rd | 92 +++--- man/to_yamlet.default.Rd | 70 ++-- man/to_yamlet.list.Rd | 78 ++--- man/to_yamlet.yamlet.Rd | 66 ++-- man/type_sum.classified.Rd |only man/unclassified.Rd | 83 ++--- man/unclassified.classified.Rd | 85 +++-- man/unclassified.data.frame.Rd | 91 +++--- man/unclassified.dvec.Rd |only man/ungroup.decorated.Rd | 74 ++-- man/unnest.Rd | 74 ++-- man/unnest.default.Rd | 54 +-- man/unnest.list.Rd | 76 ++--- man/vec_cast.character.dvec.Rd |only man/vec_cast.complex.dvec.Rd |only man/vec_cast.double.dvec.Rd |only man/vec_cast.dvec.character.Rd |only man/vec_cast.dvec.complex.Rd |only man/vec_cast.dvec.double.Rd |only man/vec_cast.dvec.dvec.Rd |only man/vec_cast.dvec.integer.Rd |only man/vec_cast.dvec.logical.Rd |only man/vec_cast.integer.dvec.Rd |only man/vec_cast.logical.dvec.Rd |only man/vec_ptype2.character.dvec.Rd |only man/vec_ptype2.complex.dvec.Rd |only man/vec_ptype2.double.dvec.Rd |only man/vec_ptype2.dvec.character.Rd |only man/vec_ptype2.dvec.complex.Rd |only man/vec_ptype2.dvec.double.Rd |only man/vec_ptype2.dvec.dvec.Rd |only man/vec_ptype2.dvec.integer.Rd |only man/vec_ptype2.dvec.logical.Rd |only man/vec_ptype2.integer.dvec.Rd |only man/vec_ptype2.logical.dvec.Rd |only man/vec_ptype_abbr.dvec.Rd |only man/write_yamlet.Rd | 161 +++++----- man/xtable.decorated.Rd | 86 ++--- man/yamlet.Rd | 200 ++++++------- tests/testthat/001.rds |only tests/testthat/002.rds |only tests/testthat/003.rds |only tests/testthat/004.rds |only tests/testthat/005.rds |only tests/testthat/006.rds |only tests/testthat/007.rds |only tests/testthat/008.rds |only tests/testthat/009.rds |only tests/testthat/010.rds |only tests/testthat/011.rds |only tests/testthat/012.rds |only tests/testthat/013.rds |only tests/testthat/014.rds |only tests/testthat/015.rds |only tests/testthat/016.rds |only tests/testthat/017.rds |only tests/testthat/018.rds |only tests/testthat/019.rds |only tests/testthat/020.rds |only tests/testthat/021.rds |only tests/testthat/022.rds |only tests/testthat/023.rds |only tests/testthat/024.rds |only tests/testthat/025.rds |only tests/testthat/026.rds |only tests/testthat/027.rds |only tests/testthat/028.rds |only tests/testthat/029.rds |only tests/testthat/030.rds |only tests/testthat/031.rds |only tests/testthat/032.rds |only tests/testthat/033.rds |only tests/testthat/034.rds |only tests/testthat/035.rds |only tests/testthat/036.rds |only tests/testthat/037.rds |only tests/testthat/038.rds |only tests/testthat/039.rds |only tests/testthat/040.rds |only tests/testthat/041.rds |only tests/testthat/042.rds |only tests/testthat/043.rds |only tests/testthat/044.rds |only tests/testthat/045.rds |only tests/testthat/046.rds |only tests/testthat/047.rds |only tests/testthat/048.rds |only tests/testthat/049.rds |only tests/testthat/050.rds |only tests/testthat/051.rds |only tests/testthat/052.rds |only tests/testthat/053.rds |only tests/testthat/054.rds |only tests/testthat/055.rds |only tests/testthat/056.rds |only tests/testthat/057.rds |only tests/testthat/058.rds |only tests/testthat/059.rds |only tests/testthat/060.rds |only tests/testthat/061.rds |only tests/testthat/062.rds |only tests/testthat/063.rds |only tests/testthat/064.rds |only tests/testthat/065.rds |only tests/testthat/066.rds |only tests/testthat/067.rds |only tests/testthat/068.rds |only tests/testthat/069.rds |only tests/testthat/070.rds |only tests/testthat/071.rds |only tests/testthat/072.rds |only tests/testthat/073.rds |only tests/testthat/074.rds |only tests/testthat/075.rds |only tests/testthat/076.rds |only tests/testthat/078.rds |only tests/testthat/079.rds |only tests/testthat/080.rds |only tests/testthat/081.rds |only tests/testthat/082.rds |only tests/testthat/083.rds |only tests/testthat/084.rds |only tests/testthat/085.rds |only tests/testthat/086.rds |only tests/testthat/087.rds |only tests/testthat/088.rds |only tests/testthat/089.rds |only tests/testthat/090.rds |only tests/testthat/091.rds |only tests/testthat/092.rds |only tests/testthat/093.rds |only tests/testthat/094.rds |only tests/testthat/095.rds |only tests/testthat/096.rds |only tests/testthat/097.rds |only tests/testthat/098.rds |only tests/testthat/099.rds |only tests/testthat/100.rds |only tests/testthat/101.rds |only tests/testthat/102.rds |only tests/testthat/103.rds |only tests/testthat/104.rds |only tests/testthat/105.rds |only tests/testthat/106.rds |only tests/testthat/107.rds |only tests/testthat/Rplots.pdf |binary tests/testthat/test-dvec.R |only tests/testthat/test-yamlet.R | 116 +++++++ 355 files changed, 8959 insertions(+), 7581 deletions(-)
Title: 'HTMLWidget' Wrapper of 'UpSet.js' for Exploring Large Set
Intersections
Description: 'UpSet.js' is a re-implementation of 'UpSetR' to create interactive set visualizations for more than three sets.
This is a 'htmlwidget' wrapper around the 'JavaScript' library 'UpSet.js'.
Author: Samuel Gratzl [aut, cre]
Maintainer: Samuel Gratzl <sam@sgratzl.com>
Diff between upsetjs versions 1.11.0 dated 2022-05-11 and 1.11.1 dated 2022-07-13
DESCRIPTION | 10 +- MD5 | 18 ++-- R/data-helpers.R | 58 ++++++++----- build/vignette.rds |binary inst/doc/colors.html | 31 ++++--- inst/doc/combinationModes.html | 28 ++++-- inst/doc/got.html | 28 ++++-- inst/doc/kmap.html | 27 +++--- inst/doc/upsetjs.html | 172 +++++++++++++++++++++-------------------- inst/doc/venn.html | 37 +++++--- 10 files changed, 229 insertions(+), 180 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-30 1.3
2015-06-03 1.2.0
2014-09-01 1.1.0
2013-07-17 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-31 0.1.3
2021-11-30 0.1.2
2021-11-07 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-12-03 0.3.9
2021-05-23 0.3.8
2021-01-27 0.3.7
2020-11-23 0.3.6
2020-08-28 0.3.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-21 0.3.2
2022-02-28 0.3.1
2022-02-12 0.3.0
2022-01-20 0.2.4
2022-01-19 0.2.3
2021-09-20 0.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-30 1.0.0
2020-09-16 0.9.0.0
2020-04-20 0.3.1
2019-10-17 0.3.0
2019-08-22 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-08 1.1.4
2021-08-17 1.0.0
2021-05-11 0.66.5
2020-03-04 0.64.2
2019-12-02 0.62.0
2019-09-19 0.61.3
2018-11-13 0.57.0
2018-09-21 0.56.1
2018-08-08 0.54.3
2018-07-13 0.53.4
2018-07-11 0.53.3
2018-05-30 0.49.1
2018-05-16 0.49.0
2018-03-26 0.47.5
2018-01-22 0.45.2
2017-10-20 0.40.1
2017-10-15 0.39.0
2017-08-17 0.35.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-21 0.2.0
2017-12-11 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-02-21 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-02-07 1.2
2016-06-04 1.0