Sun, 28 Aug 2022

Package EvolutionaryGames updated to version 0.1.2 with previous version 0.1.1 dated 2022-04-11

Title: Important Concepts of Evolutionary Game Theory
Description: Evolutionary game theory applies game theory to evolving populations in biology, see e.g. one of the books by Weibull (1994, ISBN:978-0262731218) or by Sandholm (2010, ISBN:978-0262195874) for more details. A comprehensive set of tools to illustrate the core concepts of evolutionary game theory, such as evolutionary stability or various evolutionary dynamics, for teaching and academic research is provided.
Author: Daniel Gebele [aut, cph], Jochen Staudacher [aut, cre, cph]
Maintainer: Jochen Staudacher <jochen.staudacher@hs-kempten.de>

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Package pkglite updated to version 0.2.1 with previous version 0.2.0 dated 2021-05-22

Title: Compact Package Representations
Description: A tool, grammar, and standard to represent and exchange R package source code as text files. Converts one or more source packages to a text file and restores the package structures from the file.
Author: Nan Xiao [aut, cre] , Yilong Zhang [aut], Keaven Anderson [aut], Amin Shirazi [ctb], Jeff Cheng [ctb], Merck Sharp & Dohme Corp [cph]
Maintainer: Nan Xiao <nan.xiao1@merck.com>

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Package littler updated to version 0.3.16 with previous version 0.3.15 dated 2021-12-03

Title: R at the Command-Line via 'r'
Description: A scripting and command-line front-end is provided by 'r' (aka 'littler') as a lightweight binary wrapper around the GNU R language and environment for statistical computing and graphics. While R can be used in batch mode, the r binary adds full support for both 'shebang'-style scripting (i.e. using a hash-mark-exclamation-path expression as the first line in scripts) as well as command-line use in standard Unix pipelines. In other words, r provides the R language without the environment.
Author: Dirk Eddelbuettel and Jeff Horner
Maintainer: Dirk Eddelbuettel <edd@debian.org>

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Package fastRhockey updated to version 0.3.1 with previous version 0.3.0 dated 2022-03-25

Title: Functions to Access Premier Hockey Federation and National Hockey League Play by Play Data
Description: A utility to scrape and load play-by-play data and statistics from the Premier Hockey Federation (PHF)<https://www.premierhockeyfederation.com/>, formerly known as the National Women's Hockey League (NWHL). Additionally, allows access to the National Hockey League's stats API <https://www.nhl.com/>.
Author: Ben Howell [aut], Saiem Gilani [cre, aut], Alyssa Longmuir [ctb]
Maintainer: Saiem Gilani <saiem.gilani@gmail.com>

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More information about fastRhockey at CRAN
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Package usl updated to version 3.0.3 with previous version 3.0.2 dated 2022-08-26

Title: Analyze System Scalability with the Universal Scalability Law
Description: The Universal Scalability Law (Gunther 2007) <doi:10.1007/978-3-540-31010-5> is a model to predict hardware and software scalability. It uses system capacity as a function of load to forecast the scalability for the system.
Author: Neil J. Gunther [aut], Stefan Moeding [aut, cre]
Maintainer: Stefan Moeding <stm@moeding.net>

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Package echarty updated to version 1.4.7 with previous version 1.4.5 dated 2022-03-31

Title: Minimal R/Shiny Interface to JavaScript Library 'ECharts'
Description: Deliver the full functionality of 'ECharts' with minimal overhead. 'echarty' users build R lists for 'ECharts' API. Lean set of powerful commands.
Author: Larry Helgason [cre, aut, cph], John Coene [aut, cph]
Maintainer: Larry Helgason <larry@helgasoft.com>

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Package astsa updated to version 1.16 with previous version 1.15 dated 2022-05-10

Title: Applied Statistical Time Series Analysis
Description: Data sets and scripts to accompany Time Series Analysis and Its Applications: With R Examples (4th ed), by R.H. Shumway and D.S. Stoffer. Springer Texts in Statistics, 2017, <DOI:10.1007/978-3-319-52452-8>, and Time Series: A Data Analysis Approach Using R. Chapman-Hall, 2019, <DOI:10.1201/9780429273285>.
Author: David Stoffer [aut, cre], Nicky Poison [ctb, mus, spy]
Maintainer: David Stoffer <stoffer@pitt.edu>

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Package webmockr updated to version 0.8.2 with previous version 0.8.0 dated 2021-03-14

Title: Stubbing and Setting Expectations on 'HTTP' Requests
Description: Stubbing and setting expectations on 'HTTP' requests. Includes tools for stubbing 'HTTP' requests, including expected request conditions and response conditions. Match on 'HTTP' method, query parameters, request body, headers and more. Can be used for unit tests or outside of a testing context.
Author: Scott Chamberlain [aut, cre] , Aaron Wolen [ctb] , rOpenSci [fnd]
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>

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Package SamplingStrata updated to version 1.5-3 with previous version 1.5-2 dated 2022-01-07

Title: Optimal Stratification of Sampling Frames for Multipurpose Sampling Surveys
Description: In the field of stratified sampling design, this package offers an approach for the determination of the best stratification of a sampling frame, the one that ensures the minimum sample cost under the condition to satisfy precision constraints in a multivariate and multidomain case. This approach is based on the use of the genetic algorithm: each solution (i.e. a particular partition in strata of the sampling frame) is considered as an individual in a population; the fitness of all individuals is evaluated applying the Bethel-Chromy algorithm to calculate the sampling size satisfying precision constraints on the target estimates. Functions in the package allows to: (a) analyse the obtained results of the optimisation step; (b) assign the new strata labels to the sampling frame; (c) select a sample from the new frame accordingly to the best allocation. Functions for the execution of the genetic algorithm are a modified version of the functions in the 'genalg' package. M.Ballin, G.Barcar [...truncated...]
Author: Giulio Barcaroli, Marco Ballin, Hanjo Odendaal, Daniela Pagliuca, Egon Willighagen, Diego Zardetto
Maintainer: Giulio Barcaroli <gbarcaroli@gmail.com>

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Package obliqueRSF updated to version 0.1.2 with previous version 0.1.1 dated 2019-03-13

Title: Oblique Random Forests for Right-Censored Time-to-Event Data
Description: Oblique random survival forests incorporate linear combinations of input variables into random survival forests (Ishwaran, 2008 <DOI:10.1214/08-AOAS169>). Regularized Cox proportional hazard models (Simon, 2016 <DOI:10.18637/jss.v039.i05>) are used to identify optimal linear combinations of input variables.
Author: Byron Jaeger [aut, cre]
Maintainer: Byron Jaeger <bjaeger@wakehealth.edu>

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Package biogrowth updated to version 1.0.0-3 with previous version 1.0.0-2 dated 2022-07-19

Title: Modelling of Population Growth
Description: Modelling of population growth under static and dynamic environmental conditions. Includes functions for model fitting and making prediction under isothermal and dynamic conditions. The methods (algorithms & models) are based on predictive microbiology (See Perez-Rodriguez and Valero (2012, ISBN:978-1-4614-5519-6)).
Author: Alberto Garre [aut, cre] , Jeroen Koomen [aut], Heidy den Besten [aut], Marcel Zwietering [aut]
Maintainer: Alberto Garre <garre.alberto@gmail.com>

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Package globals updated to version 0.16.1 with previous version 0.16.0 dated 2022-08-05

Title: Identify Global Objects in R Expressions
Description: Identifies global ("unknown" or "free") objects in R expressions by code inspection using various strategies (ordered, liberal, or conservative). The objective of this package is to make it as simple as possible to identify global objects for the purpose of exporting them in parallel, distributed compute environments.
Author: Henrik Bengtsson [aut, cre, cph], Davis Vaughan [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>

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Package forestploter updated to version 0.1.8 with previous version 0.1.7 dated 2022-08-07

Title: Create Flexible Forest Plot
Description: Create forest plot based on the layout of the data. Confidence interval in multiple columns by groups can be done easily. Editing plot, inserting/adding text, applying theme to the plot and much more.
Author: Alimu Dayimu [aut, cre]
Maintainer: Alimu Dayimu <ad938@cam.ac.uk>

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Package arm updated to version 1.13-1 with previous version 1.12-2 dated 2021-10-15

Title: Data Analysis Using Regression and Multilevel/Hierarchical Models
Description: Functions to accompany A. Gelman and J. Hill, Data Analysis Using Regression and Multilevel/Hierarchical Models, Cambridge University Press, 2007.
Author: Andrew Gelman [aut], Yu-Sung Su [aut, cre], Masanao Yajima [ctb], Jennifer Hill [ctb], Maria Grazia Pittau [ctb], Jouni Kerman [ctb], Tian Zheng [ctb], Vincent Dorie [ctb]
Maintainer: Yu-Sung Su <suyusung@tsinghua.edu.cn>

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Package tglkmeans updated to version 0.3.5 with previous version 0.3.4 dated 2022-04-20

Title: Efficient Implementation of K-Means++ Algorithm
Description: Efficient implementation of K-Means++ algorithm. For more information see (1) "kmeans++ the advantages of the k-means++ algorithm" by David Arthur and Sergei Vassilvitskii (2007), Proceedings of the eighteenth annual ACM-SIAM symposium on Discrete algorithms, Society for Industrial and Applied Mathematics, Philadelphia, PA, USA, pp. 1027-1035, <http://ilpubs.stanford.edu:8090/778/1/2006-13.pdf>, and (2) "The Effectiveness of Lloyd-Type Methods for the k-Means Problem" by Rafail Ostrovsky, Yuval Rabani, Leonard J. Schulman and Chaitanya Swamy <doi:10.1145/2395116.2395117>.
Author: Aviezer Lifshitz [aut, cre], Amos Tanay [aut], Weizmann Institute of Science [cph]
Maintainer: Aviezer Lifshitz <aviezer.lifshitz@weizmann.ac.il>

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Package TAM updated to version 4.1-4 with previous version 4.0-16 dated 2022-05-14

Title: Test Analysis Modules
Description: Includes marginal maximum likelihood estimation and joint maximum likelihood estimation for unidimensional and multidimensional item response models. The package functionality covers the Rasch model, 2PL model, 3PL model, generalized partial credit model, multi-faceted Rasch model, nominal item response model, structured latent class model, mixture distribution IRT models, and located latent class models. Latent regression models and plausible value imputation are also supported. For details see Adams, Wilson and Wang, 1997 <doi:10.1177/0146621697211001>, Adams, Wilson and Wu, 1997 <doi:10.3102/10769986022001047>, Formann, 1982 <doi:10.1002/bimj.4710240209>, Formann, 1992 <doi:10.1080/01621459.1992.10475229>.
Author: Alexander Robitzsch [aut,cre] , Thomas Kiefer [aut], Margaret Wu [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>

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Package movecost updated to version 1.8 with previous version 1.7 dated 2022-08-09

Title: Calculation of Slope-Dependant Accumulated Cost Surface, Least-Cost Paths, Least-Cost Corridors, Least-Cost Networks Related to Human Movement Across the Landscape
Description: Provides the facility to calculate non-isotropic accumulated cost surface, least-cost paths, least-cost corridors, least-cost networks using a number of human-movement-related cost functions that can be selected by the user. It just requires a Digital Terrain Model, a start location and (optionally) destination locations. See Alberti (2019) <doi:10.1016/j.softx.2019.100331>.
Author: Gianmarco Alberti [aut, cre]
Maintainer: Gianmarco Alberti <gianmarcoalberti@gmail.com>

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Package groupdata2 updated to version 2.0.1 with previous version 2.0.0 dated 2021-10-24

Title: Creating Groups from Data
Description: Methods for dividing data into groups. Create balanced partitions and cross-validation folds. Perform time series windowing and general grouping and splitting of data. Balance existing groups with up- and downsampling or collapse them to fewer groups.
Author: Ludvig Renbo Olsen [aut, cre]
Maintainer: Ludvig Renbo Olsen <r-pkgs@ludvigolsen.dk>

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Package rearrr updated to version 0.3.1 with previous version 0.3.0 dated 2021-09-26

Title: Rearranging Data
Description: Arrange data by a set of methods. Use rearrangers to reorder data points and mutators to change their values. From basic utilities, to centering the greatest value, to swirling in 3-dimensional space, 'rearrr' enables creativity when plotting and experimenting with data.
Author: Ludvig Renbo Olsen [aut, cre]
Maintainer: Ludvig Renbo Olsen <r-pkgs@ludvigolsen.dk>

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Package airr updated to version 1.4.1 with previous version 1.4.0 dated 2022-08-27

Title: AIRR Data Representation Reference Library
Description: Schema definitions and read, write and validation tools for data formatted in accordance with the AIRR Data Representation schemas defined by the AIRR Community <http://docs.airr-community.org>.
Author: Jason Vander Heiden [aut, cre], Susanna Marquez [aut], Scott Christley [aut], Katharina Imkeller [aut], Ulrik Stervbo [aut], AIRR Community [cph]
Maintainer: Jason Vander Heiden <jason.vanderheiden@gmail.com>

Diff between airr versions 1.4.0 dated 2022-08-27 and 1.4.1 dated 2022-08-28

 DESCRIPTION                   |    6 +++---
 MD5                           |    6 +++---
 NEWS.md                       |    2 +-
 inst/extdata/airr-schema.yaml |    4 ++--
 4 files changed, 9 insertions(+), 9 deletions(-)

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Package sspse updated to version 1.0.2 with previous version 1.0.0 dated 2022-04-10

Title: Estimating Hidden Population Size using Respondent Driven Sampling Data
Description: Estimate the size of a networked population based on respondent-driven sampling data. The package is part of the "RDS Analyst" suite of packages for the analysis of respondent-driven sampling data. See Handcock, Gile and Mar (2014) <doi:10.1214/14-EJS923> and Handcock, Gile and Mar (2015) <doi:10.1111/biom.12255>.
Author: Mark S. Handcock [aut, cre, cph], Krista J. Gile [aut, cph], Brian Kim [ctb], Katherine R. McLaughlin [ctb]
Maintainer: Mark S. Handcock <handcock@stat.ucla.edu>

Diff between sspse versions 1.0.0 dated 2022-04-10 and 1.0.2 dated 2022-08-28

 DESCRIPTION                |   20 ++++++++-------
 MD5                        |   34 +++++++++++++------------
 R/ZOSull.R                 |only
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 R/plot.sspse.R             |   60 +++++++++++++++++++++++++++++++--------------
 R/poscmpwp.R               |    6 +++-
 R/posteriorsize.R          |    6 ++--
 R/print.summary.sspse.R    |    6 ++--
 R/sspse-package.R          |    8 +++---
 R/sspse.utilities.R        |   46 ++++++++++++++++++++++++----------
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 R/zzz.R                    |    2 -
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 man/print.summary.sspse.Rd |    6 ++--
 man/sspse-package.Rd       |    8 +++---
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 19 files changed, 170 insertions(+), 93 deletions(-)

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Package germinationmetrics updated to version 0.1.7 with previous version 0.1.6 dated 2022-06-15

Title: Seed Germination Indices and Curve Fitting
Description: Provides functions to compute various germination indices such as germinability, median germination time, mean germination time, mean germination rate, speed of germination, Timson's index, germination value, coefficient of uniformity of germination, uncertainty of germination process, synchrony of germination etc. from germination count data. Includes functions for fitting cumulative seed germination curves using four-parameter hill function and computation of associated parameters. See the vignette for more, including full list of citations for the methods implemented.
Author: J. Aravind [aut, cre] , S. Vimala Devi [aut], J. Radhamani [aut], Sherry Rachel Jacob [aut], Kalyani Srinivasan [aut], ICAR-NBGPR [cph]
Maintainer: J. Aravind <j.aravind@icar.gov.in>

Diff between germinationmetrics versions 0.1.6 dated 2022-06-15 and 0.1.7 dated 2022-08-28

 DESCRIPTION                  |    8 -
 MD5                          |   24 +--
 NEWS.md                      |   11 +
 R/FourPHFfit.bulk.R          |   22 +-
 README.md                    |   77 +++++-----
 build/germinationmetrics.pdf |binary
 build/partial.rdb            |binary
 inst/REFERENCES.bib          |    2 
 inst/doc/Introduction.Rmd    |   96 ++++++------
 inst/doc/Introduction.pdf    |binary
 man/CUGerm.Rd                |  120 ++++++++--------
 man/EmergenceRateIndex.Rd    |  318 +++++++++++++++++++++----------------------
 vignettes/Introduction.Rmd   |   96 ++++++------
 13 files changed, 391 insertions(+), 383 deletions(-)

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Package namedropR updated to version 2.4.1 with previous version 2.3.3 dated 2022-05-18

Title: Create Visual Citations for Presentations and Posters
Description: Provides 'visual citations' containing the metadata of a scientific paper and a 'QR' code. A 'visual citation' is a banner containing title, authors, journal and year of a publication. This package can create such banners based on 'BibTeX' and 'BibLaTeX' references or call the reference metadata from 'Crossref'-API. The banners include a QR code pointing to the 'DOI'. The resulting HTML object or PNG image can be included in a presentation to point the audience to good resources for further reading. Styling is possible via predefined designs or via custom 'CSS'. This package is not intended as replacement for proper reference manager packages, but a tool to enrich scientific presentation slides and conference posters.
Author: Christian A. Gebhard [aut, cre] , Lukas Wallrich [ctb] , Matthew T. Warkentin [ctb]
Maintainer: Christian A. Gebhard <christian.gebhard@posteo.de>

Diff between namedropR versions 2.3.3 dated 2022-05-18 and 2.4.1 dated 2022-08-28

 DESCRIPTION                          |   60 ++++++++-------
 MD5                                  |   37 +++++----
 NAMESPACE                            |    4 +
 NEWS.md                              |   10 ++
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 R/drop_name.R                        |   27 +++++-
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 build/vignette.rds                   |binary
 inst/doc/custom_styling.html         |   13 ++-
 inst/doc/namedropR.html              |   13 ++-
 inst/doc/use_rmarkdown.html          |   13 ++-
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 man/drop_html.Rd                     |    3 
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 man/namedropR-package.Rd             |   12 ++-
 tests/testthat/test-drop_html.R      |   10 +-
 tests/testthat/test-drop_name.R      |    2 
 tests/testthat/test-write_vc.R       |  100 ++++++++++++-------------
 21 files changed, 290 insertions(+), 193 deletions(-)

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Package conductor updated to version 0.1.1 with previous version 0.1.0 dated 2022-04-28

Title: Create Tours in 'Shiny' Apps Using 'Shepherd.js'
Description: Enable the use of 'Shepherd.js' to create tours in 'Shiny' applications.
Author: Etienne Bacher [aut, cre]
Maintainer: Etienne Bacher <etienne.bacher@protonmail.com>

Diff between conductor versions 0.1.0 dated 2022-04-28 and 0.1.1 dated 2022-08-28

 DESCRIPTION                          |    9 
 LICENSE                              |    4 
 MD5                                  |   27 
 NAMESPACE                            |   18 
 NEWS.md                              |   13 
 R/conductor.R                        | 1376 +++++++++++++++++------------------
 R/zzz.R                              |    8 
 README.md                            |  163 ++--
 inst/packer/conductor.js             |    4 
 inst/packer/conductor.js.LICENSE.txt |    2 
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 man/use_conductor.Rd                 |   56 -
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 13 files changed, 1470 insertions(+), 1485 deletions(-)

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Package gamlss.foreach updated to version 1.1-6 with previous version 1.1-3 dated 2021-11-25

Title: Parallel Computations for Distributional Regression
Description: Computational intensive calculations for Generalized Additive Models for Location Scale and Shape, <doi:10.1111/j.1467-9876.2005.00510.x>.
Author: Mikis Stasinopoulos [aut, cre, cph], Bob Rigby [aut], Fernanda De Bastiani [aut]
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>

Diff between gamlss.foreach versions 1.1-3 dated 2021-11-25 and 1.1-6 dated 2022-08-28

 DESCRIPTION               |    8 ++++----
 MD5                       |   10 +++++-----
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 build/partial.rdb         |binary
 man/which.Data.Corr.Rd    |    7 ++++---
 6 files changed, 39 insertions(+), 31 deletions(-)

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Package gamlss.dist updated to version 6.0-5 with previous version 6.0-3 dated 2022-03-08

Title: Distributions for Generalized Additive Models for Location Scale and Shape
Description: A set of distributions which can be used for modelling the response variables in Generalized Additive Models for Location Scale and Shape, Rigby and Stasinopoulos (2005), <doi:10.1111/j.1467-9876.2005.00510.x>. The distributions can be continuous, discrete or mixed distributions. Extra distributions can be created, by transforming, any continuous distribution defined on the real line, to a distribution defined on ranges 0 to infinity or 0 to 1, by using a ''log'' or a ''logit' transformation respectively.
Author: Mikis Stasinopoulos [aut, cre, cph], Robert Rigby [aut], Calliope Akantziliotou [ctb], Vlasios Voudouris [ctb], Gillian Heller [ctb], Fernanda De Bastiani [ctb], Raydonal Ospina [ctb], Nicoletta Motpan [ctb], Fiona McElduff [ctb], Majid Djennad [ctb] [...truncated...]
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>

Diff between gamlss.dist versions 6.0-3 dated 2022-03-08 and 6.0-5 dated 2022-08-28

 DESCRIPTION        |    8 +--
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 build/partial.rdb  |binary
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 man/BCCG.Rd        |    6 +-
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 man/BEOI.Rd        |    6 +-
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 man/DBI.Rd         |    4 -
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 man/GB1.Rd         |    7 +-
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 man/GG.Rd          |    4 -
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 man/GPO.Rd         |    2 
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 man/GU.rd          |    2 
 man/IG.Rd          |    2 
 man/IGAMMA.Rd      |    6 +-
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 man/JSUoriginal.Rd |    6 +-
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 man/ZIP.Rd         |    2 
 man/ZIP2.Rd        |   10 ---
 man/ZIPF.Rd        |    7 +-
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 70 files changed, 404 insertions(+), 292 deletions(-)

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Package netstat updated to version 0.1.2 with previous version 0.1.1 dated 2020-01-23

Title: Retrieve Network Statistics Including Available TCP Ports
Description: R interface for the 'netstat' command line utility used to retrieve and parse commonly used network statistics, including available and in-use transmission control protocol (TCP) ports. Primers offering technical background information on the 'netstat' command line utility are available in the "Linux System Administrator's Manual" by Michael Kerrisk (2014) <https://man7.org/linux/man-pages/man8/netstat.8.html>, and on the Microsoft website (2017) <https://docs.microsoft.com/en-us/windows-server/administration/windows-commands/netstat>.
Author: Steve Condylios [aut, cre] , Bob Rudis [aut] , Patrice Kiener [aut]
Maintainer: Steve Condylios <steve.condylios@gmail.com>

Diff between netstat versions 0.1.1 dated 2020-01-23 and 0.1.2 dated 2022-08-28

 netstat-0.1.1/netstat/man/netstat-package.Rd |only
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 netstat-0.1.2/netstat/R/parse_netstat.R      |   21 +++++++++-
 netstat-0.1.2/netstat/R/ports_in_use.R       |   14 ++++---
 netstat-0.1.2/netstat/README.md              |   54 +++++++++++++--------------
 netstat-0.1.2/netstat/man/figures            |only
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 netstat-0.1.2/netstat/man/ports_in_use.Rd    |    2 -
 11 files changed, 90 insertions(+), 69 deletions(-)

More information about netstat at CRAN
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