Title: Space-Filling Random and Quasi-Random Sequences
Description: Generates random and quasi-random space-filling sequences. Supports the following sequences: 'Halton', 'Sobol', 'Owen'-scrambled 'Sobol', 'Owen'-scrambled 'Sobol' with errors distributed as blue noise, progressive jittered, progressive multi-jittered ('PMJ'), 'PMJ' with blue noise, 'PMJ02', and 'PMJ02' with blue noise. Includes a 'C++' 'API'. Methods derived from "Constructing Sobol sequences with better two-dimensional projections" (2012) <doi:10.1137/070709359> S. Joe and F. Y. Kuo, "Progressive Multi-Jittered Sample Sequences" (2018) <https://graphics.pixar.com/library/ProgressiveMultiJitteredSampling/paper.pdf> Christensen, P., Kensler, A. and Kilpatrick, C., and "A Low-Discrepancy Sampler that Distributes Monte Carlo Errors as a Blue Noise in Screen Space" (2019) E. Heitz, B. Laurent, O. Victor, C. David and I. Jean-Claude, <doi:10.1145/3306307.3328191>.
Author: Tyler Morgan-Wall [aut, cph, cre]
,
Andrew Helmer [ctb, cph],
Leonhard Gruenschloß [ctb, cph],
Eric Heitz [ctb, cph]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between spacefillr versions 0.3.1 dated 2022-10-16 and 0.3.2 dated 2022-10-24
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/Makevars | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Ryan-Holm Step-Down Bonferroni or Sidak Procedure
Description: The Ryan-Holm step-down Bonferroni or Sidak procedure is to control the family-wise (experiment-wise) type I error rate in the multiple comparisons.
This procedure provides the adjusting p-values and adjusting CIs. The methods used in this package are referenced from John Ludbrook (2000) <doi:10.1046/j.1440-1681.2000.03223.x>.
Author: Zhicheng Du Developer [aut, cre, cph],
Hailin Feng Developer [aut]
Maintainer: Zhicheng Du Developer <dgdzc@hotmail.com>
Diff between RHSDB versions 0.1.0 dated 2020-12-16 and 0.2.0 dated 2022-10-24
DESCRIPTION | 7 +++---- MD5 | 10 +++++----- R/rh.sd.bonferroni.R | 3 +++ R/rh.sd.sidak.R | 4 ++++ man/rh.sd.bonferroni.Rd | 2 ++ man/rh.sd.sidak.Rd | 2 ++ 6 files changed, 19 insertions(+), 9 deletions(-)
Title: Optimal Two-Period Multiarm Platform Design with New
Experimental Arms Added During the Trial
Description: Design parameters of the optimal two-period multiarm platform design
(controlling for either family-wise error rate or pair-wise error rate) can be calculated
using this package, allowing pre-planned deferred arms to be added during the trial. More
details about the design method can be found in the paper: Pan, H., Yuan, X. and Ye, J.
(2022) "An optimal two-period multiarm platform design with new experimental arms added
during the trial". Manuscript submitted for publication. For additional references: Dunnett,
C. W. (1955) <doi:10.2307/2281208>.
Author: Xiaomeng Yuan [aut, cre],
Haitao Pan [aut]
Maintainer: Xiaomeng Yuan <xiaomeng.yuan@stjude.org>
Diff between PlatformDesign versions 1.0.1 dated 2022-06-13 and 2.1.3 dated 2022-10-24
DESCRIPTION | 23 - MD5 | 49 +-- NEWS.md |only R/admiss.R | 24 - R/cor.mat.R | 47 +-- R/fwer_critical.r | 28 + R/one_design.R | 279 +++++++++++-------- R/one_design2.R | 82 ++++- R/one_stage_multiarm.R | 165 ++++++++--- R/platform_design.R | 329 +++++++++++++++-------- build/partial.rdb |only build/vignette.rds |binary inst/doc/PlatformDesign.R | 8 inst/doc/PlatformDesign.Rmd | 157 +++++++---- inst/doc/PlatformDesign.html | 598 +++++++----------------------------------- man/PlatformDesign-package.Rd | 6 man/admiss.Rd | 24 - man/cor.mat.Rd | 45 +-- man/fwer_critical.Rd | 27 - man/one_design.Rd | 219 ++++++++------- man/one_stage_multiarm.Rd | 127 ++++++-- man/platform_design.Rd | 217 +++++++++------ tests/testthat/test.r | 26 - vignettes/PlatformDesign.Rmd | 157 +++++++---- vignettes/newArm.PNG |binary vignettes/software_res1.PNG |binary vignettes/software_res2.PNG |only 27 files changed, 1366 insertions(+), 1271 deletions(-)
More information about PlatformDesign at CRAN
Permanent link
Title: Tools for HLA Data
Description: A streamlined tool for eplet analysis of donor and recipient HLA (human leukocyte antigen) mismatch. Messy, low-resolution HLA typing data is cleaned, and imputed to high-resolution using the NMDP (National Marrow Donor Program) haplotype reference database <https://haplostats.org/haplostats>. High resolution data is analyzed for overall or single antigen eplet mismatch using a reference table (currently supporting 'HLAMatchMaker' <http://www.epitopes.net> versions 2 and 3). Data can enter or exit the workflow at different points depending on the user's aims and initial data quality.
Author: Joan Zhang [aut, cre],
Aileen Johnson [aut],
Christian P Larsen [cph, aut]
Maintainer: Joan Zhang <joan.zhang@emory.edu>
Diff between hlaR versions 0.1.4 dated 2022-09-12 and 0.1.5 dated 2022-10-24
DESCRIPTION | 6 +- MD5 | 10 +-- R/eplet-MHC-II.R | 7 +- R/utils.R | 71 +++++++++++------------- inst/doc/allele-haplotype.html | 111 ++++++++++++++++++-------------------- inst/doc/eplet-mm.html | 119 ++++++++++++++++++++--------------------- 6 files changed, 160 insertions(+), 164 deletions(-)
Title: Visualization Package for CanvasXpress in R
Description: Enables creation of visualizations using the CanvasXpress framework
in R. CanvasXpress is a standalone JavaScript library for reproducible research
with complete tracking of data and end-user modifications stored in a single
PNG image that can be played back. See <https://www.canvasxpress.org> for more
information.
Author: Isaac Neuhaus [aut],
Connie Brett [aut, cre]
Maintainer: Connie Brett <connie@aggregate-genius.com>
Diff between canvasXpress versions 1.40.0 dated 2022-09-02 and 1.40.6 dated 2022-10-24
DESCRIPTION | 8 - MD5 | 22 +- NEWS.md | 3 inst/doc/additional_examples.html | 4 inst/doc/getting_started.html | 4 inst/htmlwidgets/canvasXpress.yaml | 2 inst/htmlwidgets/lib/canvasXpress/canvasXpress.css | 133 +++++++++++++++--- inst/htmlwidgets/lib/canvasXpress/canvasXpress.min.js | 10 - inst/shiny-examples/example2/ui.R | 2 inst/shiny-examples/example3/ui.R | 3 inst/ui-examples/cX-function.R.gz |binary tests/testthat/test-other-logical-groups.R | 72 ++++++--- 12 files changed, 195 insertions(+), 68 deletions(-)
Title: Scalable Gaussian-Process Approximations
Description: Fast scalable Gaussian process approximations, particularly well suited to spatial (aerial, remote-sensed) and environmental data, described in more detail in Katzfuss and Guinness (2017) <arXiv:1708.06302>. Package also contains a fast implementation of the incomplete Cholesky decomposition (IC0), based on Schaefer et al. (2019) <arXiv:1706.02205> and MaxMin ordering proposed in Guinness (2018) <arXiv:1609.05372>.
Author: Matthias Katzfuss [aut],
Marcin Jurek [aut, cre],
Daniel Zilber [aut],
Wenlong Gong [aut],
Joe Guinness [ctb],
Jingjie Zhang [ctb],
Florian Schaefer [ctb]
Maintainer: Marcin Jurek <marcinjurek1988@gmail.com>
Diff between GPvecchia versions 0.1.3 dated 2020-04-22 and 0.1.4 dated 2022-10-24
GPvecchia-0.1.3/GPvecchia/vignettes/GPvecchia_vignette_cache |only GPvecchia-0.1.3/GPvecchia/vignettes/GPvecchia_vignette_files |only GPvecchia-0.1.4/GPvecchia/DESCRIPTION | 14 GPvecchia-0.1.4/GPvecchia/MD5 | 83 GPvecchia-0.1.4/GPvecchia/NAMESPACE | 3 GPvecchia-0.1.4/GPvecchia/NEWS.md | 7 GPvecchia-0.1.4/GPvecchia/R/MRA_utility-functions.r | 6 GPvecchia-0.1.4/GPvecchia/R/createU.R | 54 GPvecchia-0.1.4/GPvecchia/R/ichol.R |only GPvecchia-0.1.4/GPvecchia/R/vecchia_laplace_NR.R | 124 + GPvecchia-0.1.4/GPvecchia/R/vecchia_likelihood.R | 24 GPvecchia-0.1.4/GPvecchia/R/vecchia_prediction.R | 22 GPvecchia-0.1.4/GPvecchia/R/vecchia_specify.R | 5 GPvecchia-0.1.4/GPvecchia/R/vecchia_wrappers.R | 121 - GPvecchia-0.1.4/GPvecchia/README.md | 15 GPvecchia-0.1.4/GPvecchia/build/vignette.rds |binary GPvecchia-0.1.4/GPvecchia/inst/doc/GPvecchia_vignette.R | 55 GPvecchia-0.1.4/GPvecchia/inst/doc/GPvecchia_vignette.html | 930 ++++++---- GPvecchia-0.1.4/GPvecchia/man/GPvecchia.Rd | 1 GPvecchia-0.1.4/GPvecchia/man/SelInv.Rd | 2 GPvecchia-0.1.4/GPvecchia/man/calculate_posterior_VL.Rd | 20 GPvecchia-0.1.4/GPvecchia/man/createL.Rd |only GPvecchia-0.1.4/GPvecchia/man/ichol.Rd |only GPvecchia-0.1.4/GPvecchia/man/vecchia_estimate.Rd | 20 GPvecchia-0.1.4/GPvecchia/man/vecchia_laplace_likelihood.Rd | 18 GPvecchia-0.1.4/GPvecchia/man/vecchia_laplace_likelihood_from_posterior.Rd |only GPvecchia-0.1.4/GPvecchia/man/vecchia_laplace_prediction.Rd | 12 GPvecchia-0.1.4/GPvecchia/man/vecchia_likelihood.Rd | 3 GPvecchia-0.1.4/GPvecchia/man/vecchia_prediction.Rd | 11 GPvecchia-0.1.4/GPvecchia/man/vecchia_specify.Rd | 18 GPvecchia-0.1.4/GPvecchia/src/MaxMin.cpp | 8 GPvecchia-0.1.4/GPvecchia/src/RcppExports.cpp | 5 GPvecchia-0.1.4/GPvecchia/src/U_NZentries.cpp | 54 GPvecchia-0.1.4/GPvecchia/src/fastTree.cpp | 2 GPvecchia-0.1.4/GPvecchia/tests/testthat/test-VL-mra.r | 56 GPvecchia-0.1.4/GPvecchia/tests/testthat/test-bool-operator-issue.r |only GPvecchia-0.1.4/GPvecchia/tests/testthat/test-covmodel-argument-types.r | 8 GPvecchia-0.1.4/GPvecchia/tests/testthat/test-createL.r |only GPvecchia-0.1.4/GPvecchia/tests/testthat/test-custom-covariance-estimation.r |only GPvecchia-0.1.4/GPvecchia/tests/testthat/test-getMatCov.r | 26 GPvecchia-0.1.4/GPvecchia/tests/testthat/test-issue-78.r |only GPvecchia-0.1.4/GPvecchia/tests/testthat/test-maxmin.r |only GPvecchia-0.1.4/GPvecchia/tests/testthat/test-obs-with-NA.r |only GPvecchia-0.1.4/GPvecchia/tests/testthat/test-parameter-estimation.r | 18 44 files changed, 1204 insertions(+), 541 deletions(-)
Title: Interact with Data on 'SurveyCTO'
Description: 'SurveyCTO' is a platform for mobile data collection in offline settings.
The 'rsurveycto' R package uses the 'SurveyCTO' REST API
<https://docs.surveycto.com/05-exporting-and-publishing-data/05-api-access/01.api-access.html>
to read datasets and forms from a 'SurveyCTO' server into R as 'data.table's
and to download file attachments. The package also has limited support to
write datasets to a server.
Author: Jake Hughey [aut, cre],
Robert On [aut]
Maintainer: Jake Hughey <jakejhughey@gmail.com>
Diff between rsurveycto versions 0.1.0 dated 2022-09-26 and 0.1.2 dated 2022-10-24
DESCRIPTION | 10 +++++----- MD5 | 26 +++++++++++++------------- NAMESPACE | 1 + R/scto_auth.R | 27 ++++++++++++++++----------- R/scto_get_attachments.R | 4 ++-- R/scto_meta.R | 16 +++++++++------- R/scto_read.R | 4 ++-- R/scto_write.R | 6 +++--- R/utils.R | 4 ++-- man/scto_auth.Rd | 22 +++++++++++++--------- man/scto_get_attachments.Rd | 4 ++-- man/scto_meta.Rd | 4 ++-- man/scto_read.Rd | 4 ++-- man/scto_write.Rd | 6 +++--- 14 files changed, 75 insertions(+), 63 deletions(-)
Title: Explicitly Qualifying Namespaces by Automatically Adding 'pkg::'
to Functions
Description: Automatically adding 'pkg::' to a function, i.e. mutate()
becomes dplyr::mutate(). It is up to the user to determine which
packages should be used explicitly, whether to include base R packages
or use the functionality on selected text, a file, or a complete
directory. User friendly logging is provided in the 'RStudio' Markers
pane. Lives in the spirit of 'lintr' and 'styler'. Can also be used
for checking which packages are actually used in a project.
Author: Matthias Nistler
Maintainer: Matthias Nistler <m_nistler@web.de>
Diff between origin versions 0.5.3 dated 2021-09-22 and 1.0.0 dated 2022-10-24
origin-0.5.3/origin/R/add_logging.R |only origin-0.5.3/origin/R/check_functions.R |only origin-0.5.3/origin/R/get_matches.R |only origin-0.5.3/origin/R/get_origins.R |only origin-0.5.3/origin/R/get_potential_missings.R |only origin-0.5.3/origin/R/get_string_overlap.R |only origin-0.5.3/origin/R/prep_line_logging.R |only origin-0.5.3/origin/R/prep_line_originize.R |only origin-0.5.3/origin/R/reg_extract.R |only origin-0.5.3/origin/tests/testthat/test-add_package.R |only origin-0.5.3/origin/tests/testthat/test-check_functions.R |only origin-0.5.3/origin/tests/testthat/test-get_matches.R |only origin-0.5.3/origin/tests/testthat/test-get_potential_missings.R |only origin-0.5.3/origin/tests/testthat/test-get_string_overlap.R |only origin-0.5.3/origin/tests/testthat/test-prep_line_logging.R |only origin-0.5.3/origin/tests/testthat/test-prep_line_originize.R |only origin-0.5.3/origin/tests/testthat/test-reg_extract.R |only origin-1.0.0/origin/DESCRIPTION | 13 origin-1.0.0/origin/MD5 | 123 +- origin-1.0.0/origin/NAMESPACE | 2 origin-1.0.0/origin/NEWS.md | 29 origin-1.0.0/origin/R/apply_changes.R | 93 - origin-1.0.0/origin/R/check_pkg_usage.R |only origin-1.0.0/origin/R/duplicated_all.R |only origin-1.0.0/origin/R/exclude_functions.R | 2 origin-1.0.0/origin/R/exclude_local_functions.R |only origin-1.0.0/origin/R/find_functions.R | 42 origin-1.0.0/origin/R/fix_html_tokens.R |only origin-1.0.0/origin/R/get_function_calls.R |only origin-1.0.0/origin/R/get_function_definitions.R |only origin-1.0.0/origin/R/get_local_functions.R | 2 origin-1.0.0/origin/R/get_parsed_data.R |only origin-1.0.0/origin/R/get_pkgs_from_description.R | 2 origin-1.0.0/origin/R/get_project_package.R |only origin-1.0.0/origin/R/originize.R | 237 +--- origin-1.0.0/origin/R/originize_current_file.R | 5 origin-1.0.0/origin/R/originize_current_project.R | 3 origin-1.0.0/origin/R/originize_dir.R | 6 origin-1.0.0/origin/R/originize_file.R | 4 origin-1.0.0/origin/R/originize_pkg.R | 7 origin-1.0.0/origin/R/originize_selection.R | 3 origin-1.0.0/origin/R/originize_text.R | 3 origin-1.0.0/origin/R/originize_wrap.R | 313 ++--- origin-1.0.0/origin/R/print.pkg_usage.R |only origin-1.0.0/origin/R/revert_parse_data.R |only origin-1.0.0/origin/R/run_logging.R | 4 origin-1.0.0/origin/R/set_marker_type.R | 16 origin-1.0.0/origin/R/solve_fun_duplicates.R | 1 origin-1.0.0/origin/R/solve_local_duplicates.R | 1 origin-1.0.0/origin/R/testscript.R |only origin-1.0.0/origin/R/zzz.R | 1 origin-1.0.0/origin/README.md | 20 origin-1.0.0/origin/build/vignette.rds |binary origin-1.0.0/origin/inst/doc/origin.Rmd | 103 + origin-1.0.0/origin/inst/doc/origin.html | 568 ++++++++-- origin-1.0.0/origin/inst/rstudio/addins.dcf | 7 origin-1.0.0/origin/inst/testdata/testscript.csv | 206 +-- origin-1.0.0/origin/inst/testpath/file1.R | 9 origin-1.0.0/origin/inst/testpath/file2.R | 17 origin-1.0.0/origin/man/check_pkg_usage.Rd |only origin-1.0.0/origin/man/origin-package.Rd | 3 origin-1.0.0/origin/man/originize_dir.Rd | 4 origin-1.0.0/origin/man/originize_file.Rd | 4 origin-1.0.0/origin/man/originize_pkg.Rd | 6 origin-1.0.0/origin/man/originize_selection.Rd | 3 origin-1.0.0/origin/man/print.pkg_usage.Rd |only origin-1.0.0/origin/tests/testthat/test-check_pkg_usage.R |only origin-1.0.0/origin/tests/testthat/test-duplicated_all.R |only origin-1.0.0/origin/tests/testthat/test-find_functions.R | 70 - origin-1.0.0/origin/tests/testthat/test-get_exported_functions.R | 7 origin-1.0.0/origin/tests/testthat/test-get_local_functions.R | 1 origin-1.0.0/origin/tests/testthat/test-get_project_package.R |only origin-1.0.0/origin/tests/testthat/test-originize_dir.R | 4 origin-1.0.0/origin/tests/testthat/test-originize_file.R | 10 origin-1.0.0/origin/tests/testthat/test-originize_text.R | 1 origin-1.0.0/origin/tests/testthat/test-originize_wrap.R | 2 origin-1.0.0/origin/tests/testthat/test-run_logging.R | 1 origin-1.0.0/origin/tests/testthat/test-set_marker_type.R | 16 origin-1.0.0/origin/vignettes/origin.Rmd | 103 + 79 files changed, 1274 insertions(+), 803 deletions(-)
Title: Interpretable Bivariate Density Visualization with 'ggplot2'
Description: The 'ggplot2' package provides simple functions for visualizing contours
of 2-d kernel density estimates. 'ggdensity' implements several additional density estimators
as well as more interpretable visualizations based on highest density regions instead of
the traditional height of the estimated density surface.
Author: James Otto [aut, cre] ,
David Kahle [aut]
Maintainer: James Otto <jamesotto852@gmail.com>
Diff between ggdensity versions 0.1.0 dated 2022-07-20 and 0.1.1 dated 2022-10-24
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- NEWS.md | 9 +++++++++ R/hdr_lines_fun.R | 2 +- R/helpers-ggplot2.R |only R/helpers.R | 21 +-------------------- 6 files changed, 20 insertions(+), 29 deletions(-)
Title: Hydrological Tools for Handling Hydro-Meteorological Data
Records
Description: Read, plot, manipulate and process hydro-meteorological data records (with special features for Argentina and Chile data-sets).
Author: Ezequiel Toum <etoum@mendoza-conicet.gob.ar>
Maintainer: Ezequiel Toum <etoum@mendoza-conicet.gob.ar>
Diff between hydrotoolbox versions 1.0.0 dated 2021-07-08 and 1.1.0 dated 2022-10-24
DESCRIPTION | 13 - MD5 | 238 +++++++++--------- NAMESPACE | 8 NEWS.md |only R/01_hm.R | 7 R/02_hm_compact.R | 50 +++ R/02_hm_station.R | 495 +++++++++++++++++++++------------------ R/03_hm_create.R | 6 R/04_hm_set.R | 30 ++ R/05_hm_get.R | 37 ++ R/06_hm_plot.R | 447 ++++++++++++++++++++++++++--------- R/07_hm_show.R | 133 +++++++--- R/08_hm_agg.R | 147 ++++++++--- R/09_hm_report.R | 122 +++++++-- R/10_hm_subset.R | 93 +++++-- R/11_hm_build.R | 124 +++++++-- R/11_hm_build_generic.R |only R/12_hm_melt.R | 62 +++- R/13_hm_name.R | 85 ++++-- R/14_hm_mutate.R | 80 ++++-- R/aux_agg2annually.R | 15 - R/aux_agg2climatic.R | 12 R/aux_agg2daily.R | 5 R/aux_agg2hourly.R | 20 + R/aux_agg2monthly.R | 4 R/aux_build_table.R | 24 + R/aux_dual_y_table.R | 12 R/check_class.R | 15 - R/ff_agg_table.R | 130 +++++++--- R/ff_cum_sum.R | 64 +++-- R/ff_fill_table.R | 89 ++++--- R/ff_interpolate.R | 100 +++++-- R/ff_mov_avg.R | 144 ++++++++--- R/ff_qm_vol.R | 47 ++- R/ff_read_aic.R | 43 ++- R/ff_read_cr2.R | 35 +- R/ff_read_dgi.R | 35 +- R/ff_read_ianigla.R | 29 +- R/ff_read_mnemos.R | 48 ++- R/ff_read_snih.R | 31 +- R/ff_report_miss.R | 55 ++-- R/ff_rm_spike.R | 65 +++-- R/ff_roll_fun.R |only R/ff_set_threshold.R | 70 +++-- R/ff_set_value.R | 112 +++++--- R/ff_swe_derive.R | 66 +++-- R/zzz.R |only build/vignette.rds |binary inst/doc/aic_arg.html | 283 +++------------------- inst/doc/cr2_cl.R | 13 - inst/doc/cr2_cl.Rmd | 42 +-- inst/doc/cr2_cl.html | 280 +++------------------- inst/doc/dgi_arg.R | 14 - inst/doc/dgi_arg.Rmd | 112 +++++--- inst/doc/dgi_arg.html | 289 ++++------------------ inst/doc/ianigla_arg.R | 23 + inst/doc/ianigla_arg.Rmd | 136 ++++++---- inst/doc/ianigla_arg.html | 296 ++++------------------- inst/doc/mnemos_arg.R | 22 + inst/doc/mnemos_arg.Rmd | 26 +- inst/doc/mnemos_arg.html | 309 +++++------------------- inst/doc/package_overview.html | 233 +----------------- inst/doc/snih_arg.R | 27 +- inst/doc/snih_arg.Rmd | 33 +- inst/doc/snih_arg.html | 486 +++++++++++--------------------------- inst/doc/tidyhydat_can.R | 9 inst/doc/tidyhydat_can.Rmd | 58 ++-- inst/doc/tidyhydat_can.html | 410 ++++++++------------------------ inst/doc/weathercan_can.R | 6 inst/doc/weathercan_can.Rmd | 37 +- inst/doc/weathercan_can.html | 420 +++++++++------------------------ inst/extdata/snih_qd_guido.xlsx |binary man/agg_table.Rd | 3 man/cum_sum.Rd | 17 - man/fill_table.Rd | 14 - man/hm_agg.Rd | 10 man/hm_build.Rd | 8 man/hm_build_generic.Rd |only man/hm_create.Rd | 3 man/hm_get.Rd | 11 man/hm_melt.Rd | 8 man/hm_mutate.Rd | 10 man/hm_name.Rd | 11 man/hm_plot.Rd | 10 man/hm_report.Rd | 15 - man/hm_set.Rd | 20 + man/hm_show.Rd | 11 man/hm_subset.Rd | 14 - man/hydromet-class.Rd | 8 man/hydromet_compact-class.Rd | 6 man/hydromet_station-class.Rd | 13 + man/interpolate.Rd | 22 - man/mov_avg.Rd | 8 man/report_miss.Rd | 20 - man/rm_spike.Rd | 16 - man/roll_fun.Rd |only man/set_threshold.Rd | 11 man/set_value.Rd | 25 + man/swe_derive.Rd | 14 - src/RcppExports.cpp | 5 src/col_stats.cpp | 12 tests/testthat/test-agg_table.R | 6 tests/testthat/test-cum_sum.R | 2 tests/testthat/test-fill_table.R | 2 tests/testthat/test-hm_agg.R | 2 tests/testthat/test-hm_build.R | 2 tests/testthat/test-hm_create.R | 2 tests/testthat/test-hm_get.R | 2 tests/testthat/test-hm_melt.R | 2 tests/testthat/test-hm_mutate.R | 2 tests/testthat/test-hm_name.R | 2 tests/testthat/test-hm_plot.R | 2 tests/testthat/test-hm_report.R | 2 tests/testthat/test-hm_show.R | 2 tests/testthat/test-hm_subset.R | 2 tests/testthat/test-hm_test.R | 2 vignettes/cr2_cl.Rmd | 42 +-- vignettes/dgi_arg.Rmd | 112 +++++--- vignettes/ianigla_arg.Rmd | 136 ++++++---- vignettes/mnemos_arg.Rmd | 26 +- vignettes/snih_arg.Rmd | 33 +- vignettes/tidyhydat_can.Rmd | 58 ++-- vignettes/weathercan_can.Rmd | 37 +- 123 files changed, 3829 insertions(+), 3985 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-09 1.0.0
Title: Computes Danish Pesticide Load Indicator
Description: Computes the Danish Pesticide Load Indicator as described in Kudsk et al. (2018) <doi:10.1016/j.landusepol.2017.11.010> and Moehring et al. (2019) <doi:10.1016/j.scitotenv.2018.07.287> for pesticide use data. Additionally offers the possibility to directly link pesticide use data to pesticide properties given access to the Pesticide properties database (Lewis et al., 2016) <doi:10.1080/10807039.2015.1133242>.
Author: Niklas Moehring [aut, cre] ,
Leonie Vidensky [aut],
Robert Finger [aut],
Per Kudsk [aut],
Lise Nistrup Joergensen [aut],
Jens Erik Orum [aut],
Uwe Schmitt [ctb]
Maintainer: Niklas Moehring <niklas.moehring@mtec.ethz.ch>
Diff between PesticideLoadIndicator versions 1.3.0 dated 2022-10-13 and 1.3.1 dated 2022-10-24
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/compute_load_indicator.R | 4 +++- man/compute_pesticide_load_indicator.Rd | 2 ++ tests/testthat/test_load_indicator.R | 2 +- 5 files changed, 13 insertions(+), 9 deletions(-)
More information about PesticideLoadIndicator at CRAN
Permanent link
Title: Information Matrices for 'lmeStruct' and 'glsStruct' Objects
Description: Provides analytic derivatives and information matrices for
fitted linear mixed effects (lme) models and generalized least squares (gls) models
estimated using lme() (from package 'nlme') and gls() (from package 'nlme'), respectively.
The package includes functions for estimating the sampling variance-covariance of variance
component parameters using the inverse Fisher information. The variance components include
the parameters of the random effects structure (for lme models), the variance structure,
and the correlation structure. The expected and average forms of the Fisher information matrix
are used in the calculations, and models estimated by full maximum likelihood or
restricted maximum likelihood are supported. The package also includes a function for estimating
standardized mean difference effect sizes (Pustejovsky, Hedges, and Shadish (2014) <DOI:10.3102/1076998614547577>)
based on fitted lme or gls models.
Author: James Pustejovsky [aut] ,
Man Chen [aut, cre]
Maintainer: Man Chen <manchen9005@gmail.com>
Diff between lmeInfo versions 0.2.1 dated 2022-07-06 and 0.3.0 dated 2022-10-24
DESCRIPTION | 10 +- MD5 | 34 +++++---- NEWS.md | 6 + R/derivatives.R | 16 ++-- R/function-checking.R | 7 ++ R/g_mlm.R | 6 - R/information-matrices.R | 6 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/Information-matrices-for-fitted-LME-models.html | 24 +++--- man/g_mlm.Rd | 3 tests/testthat/test-against-merDeriv.R | 52 +++++++++++---- tests/testthat/test-dfs-sensitivity.R |only tests/testthat/test-equivalent-models.R | 9 +- tests/testthat/test-equivalent-pdClasses.R |only tests/testthat/test-multi-model-g_mlm.R | 28 ++++++++ tests/testthat/test-multivariate-models.R | 46 ++++++------- tests/testthat/test-scdhlm-examples.R | 2 tests/testthat/test-two-level-models.R | 2 19 files changed, 163 insertions(+), 88 deletions(-)
Title: General Utility Functions for Analysis of Clinical Data
Description: Utility functions to facilitate the import,
the reporting and analysis of clinical data.
Example datasets in 'SDTM' and 'ADaM' format, containing a subset of patients/domains
from the 'CDISC Pilot 01 study' are also available as R datasets to demonstrate
the package functionalities.
Author: Laure Cougnaud [aut, cre],
Michela Pasetto [aut],
Arne De Roeck [rev] ,
Open Analytics [cph]
Maintainer: Laure Cougnaud <laure.cougnaud@openanalytics.eu>
Diff between clinUtils versions 0.1.1 dated 2022-02-22 and 0.1.3 dated 2022-10-24
DESCRIPTION | 10 MD5 | 30 R/data.R | 2 build/vignette.rds |binary inst/NEWS | 7 inst/doc/clinUtils-vignette.html | 2056 ++++++++++++++++++--------------- inst/examples/compareTables-example.R | 9 inst/examples/getClinDT-example.R | 6 man/clinColors.Rd | 16 man/compareTables.Rd | 9 man/dataADaMCDISCP01.Rd | 2 man/getClinDT.Rd | 4 man/getShapePalette.Rd | 6 tests/testthat.R | 2 tests/testthat/test_loadDataADaMSDTM.R | 3 tests/testthat/test_palettes.R | 13 16 files changed, 1222 insertions(+), 953 deletions(-)
Title: Clean and Analyze Continuous Glucose Monitor Data
Description: This code provides several different functions for cleaning and analyzing continuous glucose monitor data. Currently it works with 'Dexcom', 'iPro 2', 'Diasend', 'Libre', or 'Carelink' data. The cleandata() function takes a directory of CGM data files and prepares them for analysis. cgmvariables() iterates through a directory of cleaned CGM data files and produces a single spreadsheet with data for each file in either rows or columns. The column format of this spreadsheet is compatible with REDCap data upload. cgmreport() also iterates through a directory of cleaned data, and produces PDFs of individual and aggregate AGP plots. Please visit <https://github.com/childhealthbiostatscore/R-Packages/> to download the new-user guide.
Author: Tim Vigers [aut, cre]
Maintainer: Tim Vigers <timothy.vigers@cuanschutz.edu>
Diff between cgmanalysis versions 2.7.5 dated 2022-09-30 and 2.7.6 dated 2022-10-24
DESCRIPTION | 6 MD5 | 18 NAMESPACE | 10 R/cgmreport.R | 300 ++++++------ R/cgmvariables.R | 1296 ++++++++++++++++++++++++++-------------------------- R/cleandata.R | 697 ++++++++++++++------------- inst/CITATION | 46 - man/cgmreport.Rd | 66 +- man/cgmvariables.Rd | 168 +++--- man/cleandata.Rd | 117 ++-- 10 files changed, 1387 insertions(+), 1337 deletions(-)
Title: Tensors and Neural Networks with 'GPU' Acceleration
Description: Provides functionality to define and train neural networks similar to
'PyTorch' by Paszke et al (2019) <arXiv:1912.01703> but written entirely in R
using the 'libtorch' library. Also supports low-level tensor operations and
'GPU' acceleration.
Author: Daniel Falbel [aut, cre, cph],
Javier Luraschi [aut],
Dmitriy Selivanov [ctb],
Athos Damiani [ctb],
Christophe Regouby [ctb],
Krzysztof Joachimiak [ctb],
Hamada S. Badr [ctb],
RStudio [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between torch versions 0.8.1 dated 2022-08-19 and 0.9.0 dated 2022-10-24
torch-0.8.1/torch/man/torch_solve.Rd |only torch-0.8.1/torch/tools/torchgen/inst/declaration/Declarations-1.11.0.yaml |only torch-0.9.0/torch/DESCRIPTION | 9 torch-0.9.0/torch/MD5 | 214 torch-0.9.0/torch/NAMESPACE | 4 torch-0.9.0/torch/NEWS.md | 37 torch-0.9.0/torch/R/R7.R | 87 torch-0.9.0/torch/R/RcppExports.R | 1532 ++ torch-0.9.0/torch/R/autograd.R | 2 torch-0.9.0/torch/R/backends.R | 7 torch-0.9.0/torch/R/codegen-utils.R | 12 torch-0.9.0/torch/R/creation-ops.R | 13 torch-0.9.0/torch/R/cuda.R | 27 torch-0.9.0/torch/R/gen-method.R | 1335 +- torch-0.9.0/torch/R/gen-namespace-docs.R | 32 torch-0.9.0/torch/R/gen-namespace-examples.R | 2 torch-0.9.0/torch/R/gen-namespace.R | 4834 ++++++++ torch-0.9.0/torch/R/indexing.R | 2 torch-0.9.0/torch/R/install.R | 82 torch-0.9.0/torch/R/lantern_sync.R | 2 torch-0.9.0/torch/R/linalg.R | 5 torch-0.9.0/torch/R/nn-utils.R | 2 torch-0.9.0/torch/R/nn.R | 17 torch-0.9.0/torch/R/nnf-dropout.R | 22 torch-0.9.0/torch/R/nnf-fold.R | 16 torch-0.9.0/torch/R/nnf-linear.R | 12 torch-0.9.0/torch/R/nnf-loss.R | 97 torch-0.9.0/torch/R/nnf-padding.R | 54 torch-0.9.0/torch/R/optim-rprop.R | 2 torch-0.9.0/torch/R/package.R | 17 torch-0.9.0/torch/R/save.R | 28 torch-0.9.0/torch/R/tensor.R | 11 torch-0.9.0/torch/R/utils-data-collate.R | 2 torch-0.9.0/torch/R/utils-data-sampler.R | 84 torch-0.9.0/torch/R/utils-data.R | 3 torch-0.9.0/torch/R/with-indices.R | 21 torch-0.9.0/torch/R/wrapers.R | 37 torch-0.9.0/torch/build/partial.rdb |binary torch-0.9.0/torch/build/vignette.rds |binary torch-0.9.0/torch/inst/build-version | 2 torch-0.9.0/torch/inst/doc/distributions.html | 227 torch-0.9.0/torch/inst/doc/extending-autograd.html | 253 torch-0.9.0/torch/inst/doc/indexing.html | 278 torch-0.9.0/torch/inst/doc/installation.html | 289 torch-0.9.0/torch/inst/doc/loading-data.html | 337 torch-0.9.0/torch/inst/doc/python-to-r.html | 221 torch-0.9.0/torch/inst/doc/serialization.html | 254 torch-0.9.0/torch/inst/doc/tensor-creation.html | 286 torch-0.9.0/torch/inst/doc/torchscript.html | 311 torch-0.9.0/torch/inst/doc/using-autograd.html | 275 torch-0.9.0/torch/inst/include/lantern/lantern.h | 1224 ++ torch-0.9.0/torch/inst/include/lantern/types.h | 58 torch-0.9.0/torch/inst/include/torch_api.h | 2 torch-0.9.0/torch/inst/include/torch_impl.h | 10 torch-0.9.0/torch/inst/include/torch_imports.h | 2 torch-0.9.0/torch/inst/include/torch_types.h | 22 torch-0.9.0/torch/inst/include/utils.h | 17 torch-0.9.0/torch/man/backends_mps_is_available.Rd |only torch-0.9.0/torch/man/cuda_empty_cache.Rd |only torch-0.9.0/torch/man/cuda_synchronize.Rd |only torch-0.9.0/torch/man/get_install_libs_url.Rd | 2 torch-0.9.0/torch/man/install_torch.Rd | 2 torch-0.9.0/torch/man/install_torch_from_file.Rd | 2 torch-0.9.0/torch/man/nnf_multilabel_soft_margin_loss.Rd | 3 torch-0.9.0/torch/man/nnf_pad.Rd | 2 torch-0.9.0/torch/man/nnf_unfold.Rd | 5 torch-0.9.0/torch/man/optim_rprop.Rd | 2 torch-0.9.0/torch/man/sampler.Rd | 2 torch-0.9.0/torch/man/torch_bincount.Rd | 7 torch-0.9.0/torch/man/torch_load.Rd | 3 torch-0.9.0/torch/man/torch_nansum.Rd | 2 torch-0.9.0/torch/man/torch_save.Rd | 3 torch-0.9.0/torch/man/torch_serialize.Rd |only torch-0.9.0/torch/man/torch_stft.Rd | 2 torch-0.9.0/torch/src/RcppExports.cpp | 5373 +++++++++- torch-0.9.0/torch/src/autograd.cpp | 42 torch-0.9.0/torch/src/backends.cpp | 3 torch-0.9.0/torch/src/codegen.cpp | 38 torch-0.9.0/torch/src/cuda.cpp | 8 torch-0.9.0/torch/src/gen-namespace.cpp | 2176 +++- torch-0.9.0/torch/src/tensor.cpp | 10 torch-0.9.0/torch/src/torch_api.cpp | 28 torch-0.9.0/torch/src/torch_exports.cpp | 2 torch-0.9.0/torch/src/utils.cpp | 15 torch-0.9.0/torch/tests/testthat/_snaps/script_module.md | 65 torch-0.9.0/torch/tests/testthat/helper-tensor.R | 10 torch-0.9.0/torch/tests/testthat/test-allocator.R | 7 torch-0.9.0/torch/tests/testthat/test-backends.R | 5 torch-0.9.0/torch/tests/testthat/test-creation-ops.R | 6 torch-0.9.0/torch/tests/testthat/test-cuda.R | 13 torch-0.9.0/torch/tests/testthat/test-gen-namespace.R | 38 torch-0.9.0/torch/tests/testthat/test-generator.R | 17 torch-0.9.0/torch/tests/testthat/test-mps.R |only torch-0.9.0/torch/tests/testthat/test-nn.R | 31 torch-0.9.0/torch/tests/testthat/test-nnf-dropout.R |only torch-0.9.0/torch/tests/testthat/test-nnf-fold.R |only torch-0.9.0/torch/tests/testthat/test-nnf-loss.R | 31 torch-0.9.0/torch/tests/testthat/test-save.R | 19 torch-0.9.0/torch/tests/testthat/test-tensor.R | 26 torch-0.9.0/torch/tests/testthat/test-trace.R | 14 torch-0.9.0/torch/tests/testthat/test-translate.R | 2 torch-0.9.0/torch/tests/testthat/test-utils-data-sampler.R | 2 torch-0.9.0/torch/tests/testthat/test-utils-data.R | 19 torch-0.9.0/torch/tests/testthat/test-with-indices.R | 15 torch-0.9.0/torch/tests/testthat/test-wrapers.R | 6 torch-0.9.0/torch/tests/testthat/tracedmodule.pt |binary torch-0.9.0/torch/tools/buildlantern.R | 2 torch-0.9.0/torch/tools/revdep.R | 12 torch-0.9.0/torch/tools/torchgen/R/cpp.R | 64 torch-0.9.0/torch/tools/torchgen/R/r.R | 17 torch-0.9.0/torch/tools/torchgen/R/utils.R | 2 torch-0.9.0/torch/tools/torchgen/inst/declaration/Declarations-1.12.1.yaml |only torch-0.9.0/torch/vignettes/tensor/index.Rmd | 6 113 files changed, 16293 insertions(+), 4599 deletions(-)
Title: Phylogenetic ANalyses of DiversificAtion
Description: Implements macroevolutionary analyses on phylogenetic trees. See
Morlon et al. (2010) <DOI:10.1371/journal.pbio.1000493>, Morlon et al. (2011)
<DOI:10.1073/pnas.1102543108>, Condamine et al. (2013) <DOI:10.1111/ele.12062>,
Morlon et al. (2014) <DOI:10.1111/ele.12251>, Manceau et al. (2015) <DOI:10.1111/ele.12415>,
Lewitus & Morlon (2016) <DOI:10.1093/sysbio/syv116>, Drury et al. (2016) <DOI:10.1093/sysbio/syw020>,
Manceau et al. (2016) <DOI:10.1093/sysbio/syw115>, Morlon et al. (2016) <DOI:10.1111/2041-210X.12526>, Clavel & Morlon (2017) <DOI:10.1073/pnas.1606868114>,
Drury et al. (2017) <DOI:10.1093/sysbio/syx079>, Lewitus & Morlon (2017) <DOI:10.1093/sysbio/syx095>,
Drury et al. (2018) <DOI:10.1371/journal.pbio.2003563>, Clavel et al. (2019) <DOI:10.1093/sysbio/syy045>, Maliet et al. (2019) <DOI:10.1038/s41559-019-0908-0>,
Billaud et al. (2019) <DOI:10.1093/sysbio/syz057>, Lewi [...truncated...]
Author: Helene Morlon [aut, cre, cph],
Eric Lewitus [aut, cph],
Fabien Condamine [aut, cph],
Marc Manceau [aut, cph],
Julien Clavel [aut, cph],
Jonathan Drury [aut, cph],
Olivier Billaud [aut, cph],
Odile Maliet [aut, cph],
Leandro Aristide [aut, cph],
Benoi [...truncated...]
Maintainer: Helene Morlon <helene.morlon@bio.ens.psl.eu>
Diff between RPANDA versions 2.1 dated 2022-07-18 and 2.2 dated 2022-10-24
DESCRIPTION | 27 +- MD5 | 77 +++++-- NAMESPACE | 25 +- R/Phi.R | 12 - R/delineate_phylotypes.R |only R/full.R |only R/mantel_test.R |only R/mantel_test_nbpartners.R |only R/pblm.R |only R/phylosignal_network.R |only R/phylosignal_sub_network.R |only R/pi_estimator.R |only R/pi_per_site.R |only R/plot_fit_env.R | 2 R/plot_phylosignal_sub_network.R |only R/seg_sites_fasta.R |only R/sim.BipartiteEvol.R | 352 ++++++++++++++++++++++-------------- R/theta_estimator.R |only R/utils_BipartiteEvol.R | 10 - data/datalist | 1 data/mycorrhizal_network.rda |only man/JSDt_cluster.Rd | 3 man/Phocoenidae.Rd | 2 man/RPANDA-package.Rd | 7 man/build_network.BipartiteEvol.Rd | 7 man/define_species.BipartiteEvol.Rd | 32 ++- man/delineate_phylotypes.Rd |only man/fit_ClaDS.Rd | 4 man/fit_ClaDS0.Rd | 9 man/fit_coal_cst.Rd | 4 man/fit_coal_var.Rd | 3 man/getMAPS_ClaDS.Rd | 3 man/getMAPS_ClaDS0.Rd | 3 man/make_gen.BipartiteEvol.Rd | 4 man/mantel_test.Rd |only man/mantel_test_nbpartners.Rd |only man/mycorrhizal_network.Rd |only man/phylosignal_network.Rd |only man/phylosignal_sub_network.Rd |only man/pi_estimator.Rd |only man/plot_div.BipartiteEvol.Rd | 4 man/plot_net.BipartiteEvol.Rd | 4 man/plot_phylosignal_sub_network.Rd |only man/plot_prob_dtt.Rd | 3 man/prob_dtt.Rd | 4 man/sim.BipartiteEvol.Rd | 4 man/sim_MCBD.Rd | 5 man/theta_estimator.Rd |only src/RPANDA_init.c | 12 + src/fitness.c | 3 src/permute.c |only 51 files changed, 423 insertions(+), 203 deletions(-)
Title: Standardize Dates in Different Formats or with Missing Data
Description: There are many different formats dates are commonly
represented with: the order of day, month, or year can differ,
different separators ("-", "/", or whitespace) can be used, months can
be numerical, names, or abbreviations and year given as two digits or
four. 'datefixR' takes dates in all these different formats and
converts them to R's built-in date class. If 'datefixR' cannot
standardize a date, such as because it is too malformed, then the user
is told which date cannot be standardized and the corresponding ID for
the row. 'datefixR' also allows the imputation of missing days and
months with user-controlled behavior.
Author: Nathan Constantine-Cooke [aut, cre]
,
Jonathan Kitt [ctb, trl],
Antonio J. Perez-Luque [ctb, trl]
,
Daniel Possenriede [ctb, trl] ,
Kaique dos S. Alves [rev] ,
Al-Ahmadgaid B. Asaad [rev]
Maintainer: Nathan Constantine-Cooke <nathan.constantine-cooke@ed.ac.uk>
Diff between datefixR versions 1.3.0 dated 2022-10-17 and 1.3.1 dated 2022-10-24
DESCRIPTION | 11 - MD5 | 21 +- NAMESPACE | 2 NEWS.md | 8 R/RcppExports.R |only R/datefixR-package.R | 2 R/fix_date_char.R | 3 R/fix_date_df.R | 4 R/internal.R | 109 +++------- inst/doc/datefixR.html | 4 src |only tests/testthat/test_languages.R | 418 ++++++++++++++++++++-------------------- 12 files changed, 281 insertions(+), 301 deletions(-)
Title: Beyond the Border - Kernel Density Estimation for Urban
Geography
Description: The kernelSmoothing() function allows you to square and smooth geolocated data. It calculates a classical kernel smoothing (conservative) or a geographically weighted median. There are four major call modes of the function.
The first call mode is kernelSmoothing(obs, epsg, cellsize, bandwidth) for a classical kernel smoothing and automatic grid.
The second call mode is kernelSmoothing(obs, epsg, cellsize, bandwidth, quantiles) for a geographically weighted median and automatic grid.
The third call mode is kernelSmoothing(obs, epsg, cellsize, bandwidth, centroids) for a classical kernel smoothing and user grid.
The fourth call mode is kernelSmoothing(obs, epsg, cellsize, bandwidth, quantiles, centroids) for a geographically weighted median and user grid.
Geographically weighted summary statistics : a framework for localised exploratory data analysis, C.Brunsdon & al., in Computers, Environment and Urban Systems C.Brunsdon & al. (2002) <doi:10.1016/S0198-9715(01)00009-6>,
S [...truncated...]
Author: Arlindo Dos Santos [aut],
Francois Semecurbe [aut],
Julien Pramil [aut],
Kim Antunez [cre, ctb],
Auriane Renaud [ctb],
Farida Marouchi [ctb],
Joachim Timoteo [ctb],
Institut national de la statistique et des etudes economiques [cph]
Maintainer: Kim Antunez <antuki.kim+cran@gmail.com>
Diff between btb versions 0.1.30.3 dated 2020-06-03 and 0.2.0 dated 2022-10-24
btb-0.1.30.3/btb/inst/NEWS |only btb-0.1.30.3/btb/inst/testsUnitaires |only btb-0.1.30.3/btb/man/figures/Thumbs.db |only btb-0.2.0/btb/DESCRIPTION | 55 ++-- btb-0.2.0/btb/MD5 | 87 ++++-- btb-0.2.0/btb/NAMESPACE | 27 + btb-0.2.0/btb/NEWS.md |only btb-0.2.0/btb/R/RcppExports.R | 108 +++++-- btb-0.2.0/btb/R/btb.R |only btb-0.2.0/btb/R/btb_add_centroids.R |only btb-0.2.0/btb/R/btb_add_inspire.R |only btb-0.2.0/btb/R/btb_ptsToGrid.R |only btb-0.2.0/btb/R/btb_smooth.R |only btb-0.2.0/btb/R/dfPrix_SP95_2016.R |only btb-0.2.0/btb/R/dfRestaurantParis.R |only btb-0.2.0/btb/R/dfToGrid.R |only btb-0.2.0/btb/R/kernelSmoothing.R | 316 ++--------------------- btb-0.2.0/btb/R/pixel_france.R |only btb-0.2.0/btb/R/reunion.R |only btb-0.2.0/btb/R/utils-pipe.R |only btb-0.2.0/btb/README.md |only btb-0.2.0/btb/build |only btb-0.2.0/btb/inst/doc |only btb-0.2.0/btb/man/btb.Rd |only btb-0.2.0/btb/man/btb_add_centroids.Rd |only btb-0.2.0/btb/man/btb_add_inspire.Rd |only btb-0.2.0/btb/man/btb_ptsToGrid.Rd |only btb-0.2.0/btb/man/btb_smooth.Rd |only btb-0.2.0/btb/man/constituerGrappes.Rd | 96 ++---- btb-0.2.0/btb/man/constituerMatriceEffectifs.Rd | 91 ++---- btb-0.2.0/btb/man/dfPrix_SP95_2016.Rd | 49 +-- btb-0.2.0/btb/man/dfRestaurantParis.Rd | 64 ++-- btb-0.2.0/btb/man/dfToGrid.Rd | 74 +---- btb-0.2.0/btb/man/figures/logo.png |only btb-0.2.0/btb/man/kernelSmoothing.Rd | 245 +++-------------- btb-0.2.0/btb/man/pipe.Rd |only btb-0.2.0/btb/man/pixel_france.Rd | 50 ++- btb-0.2.0/btb/man/reunion.Rd | 65 ++-- btb-0.2.0/btb/src/RcppExports.cpp | 19 - btb-0.2.0/btb/src/constituerGrappes.cpp | 38 ++ btb-0.2.0/btb/src/constituerMatriceEffectifs.cpp | 39 ++ btb-0.2.0/btb/src/init.c | 20 - btb-0.2.0/btb/src/rcppLissage.cpp | 38 +- btb-0.2.0/btb/src/rcppLissageMedianGrappe.cpp | 22 - btb-0.2.0/btb/tests |only btb-0.2.0/btb/vignettes |only 46 files changed, 614 insertions(+), 889 deletions(-)
Title: Deployment Interface for R Markdown Documents and Shiny
Applications
Description: Programmatic deployment interface for 'RPubs', 'shinyapps.io', and
'RStudio Connect'. Supported content types include R Markdown documents,
Shiny applications, Plumber APIs, plots, and static web content.
Author: Aron Atkins [aut, cre],
Jonathan McPherson [aut],
JJ Allaire [aut],
RStudio [cph, fnd]
Maintainer: Aron Atkins <aron@rstudio.com>
Diff between rsconnect versions 0.8.27 dated 2022-07-12 and 0.8.28 dated 2022-10-24
DESCRIPTION | 8 MD5 | 39 +-- NEWS.md | 23 ++ R/accounts.R | 31 ++ R/applications.R | 2 R/auth.R | 4 R/bundle.R | 58 ++--- R/configureApp.R | 9 R/deployApp.R | 30 +- R/lucid.R | 306 ++++++++++++++++++++++++++++- R/servers.R | 36 ++- R/utils.R | 8 R/writeManifest.R | 2 man/deployTFModel.Rd | 6 man/setAccountInfo.Rd | 4 tests/testthat/helper.R | 37 +++ tests/testthat/test-accounts.R |only tests/testthat/test-bundle.R | 7 tests/testthat/test-cert.R | 245 ++++++++++++----------- tests/testthat/test-detection.R | 18 + tests/testthat/test-http.R | 418 +++++++++++++++++++++++----------------- 21 files changed, 892 insertions(+), 399 deletions(-)
Title: Graphic Devices Based on AGG
Description: Anti-Grain Geometry (AGG) is a high-quality and
high-performance 2D drawing library. The 'ragg' package provides a set
of graphic devices based on AGG to use as alternative to the raster
devices provided through the 'grDevices' package.
Author: Thomas Lin Pedersen [cre, aut]
,
Maxim Shemanarev [aut, cph] ,
Tony Juricic [ctb, cph] ,
Milan Marusinec [ctb, cph] ,
Spencer Garrett [ctb] ,
RStudio [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@rstudio.com>
Diff between ragg versions 1.2.3 dated 2022-09-29 and 1.2.4 dated 2022-10-24
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ src/AggDevice.h | 19 +++++++++++-------- 4 files changed, 21 insertions(+), 14 deletions(-)
Title: Search Spaces for Hyperparameter Tuning
Description: Collection of search spaces for hyperparameter tuning.
Includes various search spaces that can be directly applied on an
`mlr3` learner. Additionally, meta information about the search space
can be queried.
Author: Marc Becker [cre, aut] ,
Michel Lang [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3tuningspaces versions 0.3.0 dated 2022-06-28 and 0.3.1 dated 2022-10-24
mlr3tuningspaces-0.3.0/mlr3tuningspaces/R/helper.R |only mlr3tuningspaces-0.3.1/mlr3tuningspaces/DESCRIPTION | 18 mlr3tuningspaces-0.3.1/mlr3tuningspaces/MD5 | 19 mlr3tuningspaces-0.3.1/mlr3tuningspaces/NEWS.md | 4 mlr3tuningspaces-0.3.1/mlr3tuningspaces/R/TuningSpace.R | 3 mlr3tuningspaces-0.3.1/mlr3tuningspaces/R/bibentries.R | 2 mlr3tuningspaces-0.3.1/mlr3tuningspaces/R/tuning_spaces_default.R | 3 mlr3tuningspaces-0.3.1/mlr3tuningspaces/README.md | 196 ++++++---- mlr3tuningspaces-0.3.1/mlr3tuningspaces/man/TuningSpace.Rd | 36 - mlr3tuningspaces-0.3.1/mlr3tuningspaces/man/tuning_spaces_default.Rd | 8 mlr3tuningspaces-0.3.1/mlr3tuningspaces/tests/testthat/test_as_search_space.R | 11 11 files changed, 198 insertions(+), 102 deletions(-)
More information about mlr3tuningspaces at CRAN
Permanent link
Title: Basic Functions in Knowledge Space Theory Using Matrix
Representation
Description: Knowledge space theory by Doignon and Falmagne (1999)
<doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical
framework, which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The 'kstMatrix' package
provides basic functionalities to generate, handle, and manipulate
knowledge structures and knowledge spaces. Opposed to the 'kst'
package, 'kstMatrix' uses matrix representations for knowledge
structures. Furthermore, 'kstMatrix' contains several knowledge spaces
developed by the research group around Cornelia Dowling through
querying experts.
Author: Cord Hockemeyer [aut, cre],
Wai Wong [aut]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between kstMatrix versions 0.1-3 dated 2022-03-25 and 0.1-4 dated 2022-10-24
DESCRIPTION | 10 - MD5 | 13 - NAMESPACE | 1 R/kmhasse.R | 86 +++++----- R/kmneighbourhood.R | 44 +++++ build/vignette.rds |binary inst/doc/kstMatrix.html | 396 ++++++++++++++++++++++++++++++++++++++++-------- man/kmnneighbourhood.Rd |only 8 files changed, 436 insertions(+), 114 deletions(-)
Title: Estimating Environmental Suitability for Plants
Description: The ecocrop model estimates environmental suitability for plants using a limiting factor approach for plant growth following Hackett (1991) <doi:10.1007/BF00045728>. The implementation in this package is fast and flexible: it allows for the use of any (environmental) predictor variable. Predictors can be either static (for example, soil pH) or dynamic (for example, monthly precipitation).
Author: Robert J. Hijmans [cre, aut],
Rhys Manners [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between Recocrop versions 0.3-2 dated 2021-05-04 and 0.4-1 dated 2022-10-24
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- build/partial.rdb |binary src/ecocrop.cpp | 2 +- src/ecocrop.h | 2 ++ 5 files changed, 12 insertions(+), 10 deletions(-)
Title: Working with Files from 'LexisNexis'
Description: My PhD supervisor once told me that everyone doing newspaper
analysis starts by writing code to read in files from the 'LexisNexis' newspaper
archive (retrieved e.g., from <https://www.lexisnexis.com/> or any of the partner
sites). However, while this is a nice exercise I do recommend, not everyone has
the time. This package takes files downloaded from the newspaper archive of
'LexisNexis', reads them into R and offers functions for further processing.
Author: Johannes Gruber [aut, cre]
Maintainer: Johannes Gruber <JohannesB.Gruber@gmail.com>
Diff between LexisNexisTools versions 0.3.5 dated 2022-01-04 and 0.3.6 dated 2022-10-24
LexisNexisTools-0.3.5/LexisNexisTools/tests/files/rDNA.RDS |only LexisNexisTools-0.3.6/LexisNexisTools/DESCRIPTION | 16 LexisNexisTools-0.3.6/LexisNexisTools/MD5 | 19 LexisNexisTools-0.3.6/LexisNexisTools/NEWS.md | 4 LexisNexisTools-0.3.6/LexisNexisTools/R/LexisNexisTools.R | 19 LexisNexisTools-0.3.6/LexisNexisTools/build/vignette.rds |binary LexisNexisTools-0.3.6/LexisNexisTools/inst/CITATION | 4 LexisNexisTools-0.3.6/LexisNexisTools/inst/WORDLIST | 3 LexisNexisTools-0.3.6/LexisNexisTools/inst/doc/demo.html | 325 ++++++---- LexisNexisTools-0.3.6/LexisNexisTools/tests/testthat/test-lnt_convert.R | 11 LexisNexisTools-0.3.6/LexisNexisTools/tests/testthat/test-lnt_read_uni.R | 4 11 files changed, 258 insertions(+), 147 deletions(-)
More information about LexisNexisTools at CRAN
Permanent link
Title: Knowledge Space Theory
Description: Knowledge space theory by Doignon and Falmagne (1999)
<doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical
framework, which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The 'kst' package provides
basic functionalities to generate, handle, and manipulate knowledge
structures and knowledge spaces.
Author: Christina Stahl [aut],
David Meyer [aut],
Cord Hockemeyer [aut, cre]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between kst versions 0.5-3 dated 2022-07-13 and 0.5-4 dated 2022-10-24
Changelog | 3 +++ DESCRIPTION | 10 +++++----- MD5 | 16 +++++++++------- NAMESPACE | 1 + R/knneighbourhood.R |only inst/doc/kst.R | 5 +++-- inst/doc/kst.Rnw | 5 +++-- inst/doc/kst.pdf |binary man/knneighbourhood.Rd |only vignettes/kst.Rnw | 5 +++-- 10 files changed, 27 insertions(+), 18 deletions(-)
Title: Fitting Single and Mixture of Generalised Lambda Distributions
Description: The fitting algorithms considered in this package have two major objectives. One is to provide a smoothing device to fit distributions to data using the weight and unweighted discretised approach based on the bin width of the histogram. The other is to provide a definitive fit to the data set using the maximum likelihood and quantile matching estimation. Other methods such as moment matching, starship method, L moment matching are also provided. Diagnostics on goodness of fit can be done via qqplots, KS-resample tests and comparing mean, variance, skewness and kurtosis of the data with the fitted distribution. References include the following: Karvanen and Nuutinen (2008) "Characterizing the generalized lambda distribution by L-moments" <doi:10.1016/j.csda.2007.06.021>, King and MacGillivray (1999) "A starship method for fitting the generalised lambda distributions" <doi:10.1111/1467-842X.00089>, Su (2005) "A Discretized Approach to Flexibly Fit Generalized Lambda Distribut [...truncated...]
Author: Steve Su [aut, cre, cph] ,
Martin Maechler [aut],
Juha Karvanen [aut],
Robert King [aut],
Benjamin Dean [ctb],
R Core Team [aut]
Maintainer: Steve Su <allegro.su@gmail.com>
Diff between GLDEX versions 2.0.0.9.1 dated 2022-10-18 and 2.0.0.9.2 dated 2022-10-24
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/GLDEX.c | 33 +++++++++++++++++---------------- 3 files changed, 23 insertions(+), 22 deletions(-)
Title: Alpha Hull Computation
Description: Computation of the alpha hull of a set of points in the 3D
space, that is to say "something like the shape formed by these
points". The alpha hull depends on a positive parameter alpha. When
alpha goes to zero, the alpha hull degenerates to the set of points,
while it is the convex hull of the set of points when alpha goes to
infinity. Computations are performed by the 'CGAL' 'C++' library
<https://www.cgal.org/>.
Author: Stephane Laurent [aut, cre]
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between AlphaHull3D versions 1.0.0 dated 2022-10-19 and 1.1.0 dated 2022-10-24
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 9 +++++++++ src/Makevars.in | 2 +- src/Makevars.win | 2 +- src/alphahull3d.cpp | 34 +++++++++++++++++++++++++--------- 6 files changed, 44 insertions(+), 19 deletions(-)
Title: Statistical Process Control -- Calculation of ARL and Other
Control Chart Performance Measures
Description: Evaluation of control charts by means of
the zero-state, steady-state ARL (Average Run Length) and RL quantiles.
Setting up control charts for given in-control ARL. The control charts
under consideration are one- and two-sided EWMA, CUSUM, and
Shiryaev-Roberts schemes for monitoring the mean or variance of normally
distributed independent data. ARL calculation of the same set of schemes under drift (in the mean) are added.
Eventually, all ARL measures for the multivariate EWMA (MEWMA) are provided.
Author: Sven Knoth
Maintainer: Sven Knoth <Sven.Knoth@gmx.de>
Diff between spc versions 0.6.6 dated 2022-03-17 and 0.6.7 dated 2022-10-24
DESCRIPTION | 8 +++---- MD5 | 16 +++++++------- R/imr.arl.C1987b.R | 12 +++++------ R/imr.arl.R | 12 ++++++++--- R/xgrsr.arl.R | 8 ++++--- R/xgrsr.crit.R | 2 - man/euklid.ewma.arl.Rd | 2 - src/allspc.c | 19 ++++++++++++----- src/xewma_ad.c | 53 +++++++++++++++++++++++++++++++++++++++++++++---- 9 files changed, 97 insertions(+), 35 deletions(-)
Title: Read, Write and Edit xlsx Files
Description: Simplifies the creation of Excel .xlsx files by providing a
high level interface to writing, styling and editing worksheets.
Through the use of 'Rcpp', read/write times are comparable to the
'xlsx' and 'XLConnect' packages with the added benefit of removing the
dependency on Java.
Author: Philipp Schauberger [aut, cre],
Alexander Walker [aut],
Luca Braglia [ctb],
Joshua Sturm [ctb],
Jan Marvin Garbuszus [ctb],
Jordan Mark Barbone [ctb]
Maintainer: Philipp Schauberger <philipp@schauberger.co.at>
Diff between openxlsx versions 4.2.5 dated 2021-12-14 and 4.2.5.1 dated 2022-10-24
DESCRIPTION | 8 +-- MD5 | 14 ++--- R/conditional_formatting.R | 120 ++++++++++++++++++++++----------------------- R/wrappers.R | 28 +++++----- src/load_workbook.cpp | 4 - src/read_workbook.cpp | 10 +-- src/write_data.cpp | 4 - src/write_file.cpp | 2 8 files changed, 95 insertions(+), 95 deletions(-)
Title: Summarize CRAN Check Results in the Terminal
Description: The CRAN check results and where your package stands in the
CRAN submission queue in your R terminal.
Author: Francois Michonneau [aut, cre],
Ben Bolker [ctb]
Maintainer: Francois Michonneau <francois.michonneau@gmail.com>
Diff between foghorn versions 1.4.2 dated 2021-07-11 and 1.5.1 dated 2022-10-24
foghorn-1.4.2/foghorn/R/api_cranchecks.R |only foghorn-1.4.2/foghorn/inst/doc/foghorn.R |only foghorn-1.5.1/foghorn/DESCRIPTION | 14 foghorn-1.5.1/foghorn/MD5 | 41 - foghorn-1.5.1/foghorn/NAMESPACE | 11 foghorn-1.5.1/foghorn/NEWS.md | 21 foghorn-1.5.1/foghorn/R/cran_check_table.R | 6 foghorn-1.5.1/foghorn/R/cran_files.R | 112 --- foghorn-1.5.1/foghorn/R/cran_queue.R | 96 ++- foghorn-1.5.1/foghorn/R/cran_results.R | 2 foghorn-1.5.1/foghorn/R/foghorn.R | 54 + foghorn-1.5.1/foghorn/R/utils.R | 7 foghorn-1.5.1/foghorn/build/vignette.rds |binary foghorn-1.5.1/foghorn/inst/doc/foghorn.Rmd | 162 ++++- foghorn-1.5.1/foghorn/inst/doc/foghorn.html | 324 +++++++++-- foghorn-1.5.1/foghorn/man/cran_details.Rd | 8 foghorn-1.5.1/foghorn/man/cran_incoming.Rd | 60 +- foghorn-1.5.1/foghorn/man/cran_results.Rd | 10 foghorn-1.5.1/foghorn/tests/testthat/test-foghorn.R | 23 foghorn-1.5.1/foghorn/tests/testthat/test-incoming.R | 33 + foghorn-1.5.1/foghorn/tests/testthat/test-n_cran_platforms.R | 2 foghorn-1.5.1/foghorn/vignettes/foghorn.Rmd | 162 ++++- foghorn-1.5.1/foghorn/vignettes/foghorn.Rmd.orig |only 23 files changed, 822 insertions(+), 326 deletions(-)
Title: Misc Functions of the Department of Statistics, Probability
Theory Group (Formerly: E1071), TU Wien
Description: Functions for latent class analysis, short time Fourier
transform, fuzzy clustering, support vector machines,
shortest path computation, bagged clustering, naive Bayes
classifier, generalized k-nearest neighbour ...
Author: David Meyer [aut, cre],
Evgenia Dimitriadou [aut, cph],
Kurt Hornik [aut],
Andreas Weingessel [aut],
Friedrich Leisch [aut],
Chih-Chung Chang [ctb, cph] ,
Chih-Chen Lin [ctb, cph]
Maintainer: David Meyer <David.Meyer@R-project.org>
Diff between e1071 versions 1.7-11 dated 2022-06-07 and 1.7-12 dated 2022-10-24
DESCRIPTION | 6 +-- MD5 | 24 ++++++------ R/svm.R | 10 +++-- R/tune.R | 40 +++++++++++++++++--- build/vignette.rds |binary inst/NEWS.Rd | 4 ++ inst/doc/svmdoc.R | 88 ++++++++++++++++++++++++---------------------- inst/doc/svmdoc.Rnw | 86 +++++++++++++++++++++++--------------------- inst/doc/svmdoc.pdf |binary inst/doc/svminternals.pdf |binary man/tune.Rd | 17 ++++++-- man/tune.wrapper.Rd | 8 +++- vignettes/svmdoc.Rnw | 86 +++++++++++++++++++++++--------------------- 13 files changed, 214 insertions(+), 155 deletions(-)
Title: Penalized Poisson Pseudo Maximum Likelihood Regression
Description: A set of tools that enables efficient estimation of penalized
Poisson Pseudo Maximum Likelihood regressions, using lasso or ridge penalties, for models
that feature one or more sets of high-dimensional fixed effects. The methodology is based on
Breinlich, Corradi, Rocha, Ruta, Santos Silva, and Zylkin (2021) <http://hdl.handle.net/10986/35451>
and takes advantage of the method of alternating projections of Gaure (2013)
<doi:10.1016/j.csda.2013.03.024> for dealing with HDFE, as well as
the coordinate descent algorithm of Friedman, Hastie and Tibshirani (2010)
<doi:10.18637/jss.v033.i01> for fitting lasso regressions. The package is also able to carry out
cross-validation and to implement the plugin lasso of Belloni, Chernozhukov, Hansen and Kozbur (2016)
<doi:10.1080/07350015.2015.1102733>.
Author: Diego Ferreras Garrucho [aut],
Tom Zylkin [aut],
Nicolas Apfel [cre]
Maintainer: Nicolas Apfel <nicolas.apfel@gmail.com>
Diff between penppml versions 0.1.1 dated 2022-01-03 and 0.2.0 dated 2022-10-24
DESCRIPTION | 13 MD5 | 53 +- NAMESPACE | 40 - NEWS.md | 6 R/bootstrap.R |only R/hdfeppml_int.R | 166 ++++-- R/iceberg.R | 370 ++++++-------- R/mlfitppml_int.R | 487 +++++++++--------- R/penhdfeppml_cluster_int.R | 488 ++++++++++-------- R/penhdfeppml_int.R | 662 ++++++++++++++----------- R/penppml-package.R | 81 +-- R/utils.R | 124 ++++ R/xvalidate.R | 701 ++++++++++++++------------ build/partial.rdb |only build/vignette.rds |binary inst/doc/intro-to-penppml.R | 92 +++ inst/doc/intro-to-penppml.Rmd | 120 ++++ inst/doc/intro-to-penppml.html | 1078 +++++++++++++++++++++++++++++++++++------ man/bootstrap.Rd |only man/collinearity_check.Rd | 15 man/genmodel.Rd | 2 man/hdfeppml_int.Rd | 16 man/mlfitppml_int.Rd | 17 man/penhdfeppml_cluster_int.Rd | 19 man/penhdfeppml_int.Rd | 21 man/penppml-package.Rd | 2 man/xvalidate.Rd | 11 src/code.cpp | 1 vignettes/intro-to-penppml.Rmd | 120 ++++ 29 files changed, 3133 insertions(+), 1572 deletions(-)
Title: Flexible Regression Models for Survival Data
Description: Programs for Martinussen and Scheike (2006), `Dynamic Regression
Models for Survival Data', Springer Verlag. Plus more recent developments.
Additive survival model, semiparametric proportional odds model, fast
cumulative residuals, excess risk models and more. Flexible competing risks
regression including GOF-tests. Two-stage frailty modelling. PLS for the
additive risk model. Lasso in the 'ahaz' package.
Author: Thomas Scheike with contributions from Torben Martinussen, Jeremy
Silver and Klaus Holst
Maintainer: Thomas Scheike <ts@biostat.ku.dk>
Diff between timereg versions 2.0.2 dated 2022-04-11 and 2.0.3 dated 2022-10-24
timereg-2.0.2/timereg/src/Gprop-odds-subdist.c |only timereg-2.0.2/timereg/src/aalen-test.c |only timereg-2.0.2/timereg/src/additive-pls-new.c |only timereg-2.0.2/timereg/src/cox-aalen-lwy-resamp.c |only timereg-2.0.2/timereg/src/cox-aalen-stratum.c |only timereg-2.0.2/timereg/src/kim-kim.c |only timereg-2.0.3/timereg/DESCRIPTION | 10 timereg-2.0.3/timereg/MD5 | 72 ++--- timereg-2.0.3/timereg/NAMESPACE | 1 timereg-2.0.3/timereg/R/Gprop-odds.r | 10 timereg-2.0.3/timereg/R/comprisk.r | 61 ++-- timereg-2.0.3/timereg/R/event.split.r | 18 + timereg-2.0.3/timereg/R/sim-pc-hazard.r | 56 +++- timereg-2.0.3/timereg/R/two-stage-reg.r | 8 timereg-2.0.3/timereg/man/Gprop.odds.Rd | 10 timereg-2.0.3/timereg/man/comp.risk.Rd | 12 timereg-2.0.3/timereg/man/event.split.Rd | 14 + timereg-2.0.3/timereg/man/sim.cox.Rd | 1 timereg-2.0.3/timereg/src/Gprop-odds.c | 27 + timereg-2.0.3/timereg/src/aalen.c | 36 +- timereg-2.0.3/timereg/src/aalenC.c | 15 - timereg-2.0.3/timereg/src/additive-compSs.c | 288 ++++++++++----------- timereg-2.0.3/timereg/src/breslow.c | 32 -- timereg-2.0.3/timereg/src/comprisk.c | 70 +++-- timereg-2.0.3/timereg/src/comptest-cmprsk.c | 15 - timereg-2.0.3/timereg/src/comptest.c | 33 +- timereg-2.0.3/timereg/src/cox-aalen.c | 27 + timereg-2.0.3/timereg/src/dynadd.c | 37 +- timereg-2.0.3/timereg/src/ipcw-residualmean.c | 59 ++-- timereg-2.0.3/timereg/src/mgresid.c | 52 +-- timereg-2.0.3/timereg/src/pe-sasieni.c | 13 timereg-2.0.3/timereg/src/pred.c | 7 timereg-2.0.3/timereg/src/prop-excess.c | 39 +- timereg-2.0.3/timereg/src/prop-odds-subdist2.c | 23 - timereg-2.0.3/timereg/src/prop-odds.c | 19 - timereg-2.0.3/timereg/src/smooth.c | 20 - timereg-2.0.3/timereg/src/smooth2.c | 6 timereg-2.0.3/timereg/src/timecox.c | 36 +- timereg-2.0.3/timereg/src/two-stage-reg.c | 18 - timereg-2.0.3/timereg/src/unifConfBandResampling.c | 5 40 files changed, 609 insertions(+), 541 deletions(-)
Title: Bayesian Latent Gaussian Modelling using INLA and Extensions
Description: Facilitates spatial and general latent Gaussian modeling using
integrated nested Laplace approximation via the INLA package (<https://www.r-inla.org>).
Additionally, extends the GAM-like model class to more general nonlinear predictor
expressions, and implements a log Gaussian Cox process likelihood for
modeling univariate and spatial point processes based on ecological survey data.
Model components are specified with general inputs and mapping methods to the
latent variables, and the predictors are specified via general R expressions,
with separate expressions for each observation likelihood model in
multi-likelihood models. A prediction method based on fast Monte Carlo sampling
allows posterior prediction of general expressions of the latent variables.
Ecology-focused introduction in Bachl, Lindgren, Borchers, and Illian (2019)
<doi:10.1111/2041-210X.13168>.
Author: Finn Lindgren [aut, cre, cph] ,
Fabian E. Bachl [aut, cph] ,
David L. Borchers [ctb, dtc, cph] ,
Daniel Simpson [ctb, cph] ,
Lindesay Scott-Howard [ctb, dtc, cph] ,
Seaton Andy [ctb] ,
Suen Man Ho [ctb, cph] ,
Roudier Pierre [ctb, cph] ,
Meehan Tim [ [...truncated...]
Maintainer: Finn Lindgren <finn.lindgren@gmail.com>
Diff between inlabru versions 2.5.3 dated 2022-09-05 and 2.6.0 dated 2022-10-24
inlabru-2.5.3/inlabru/man/amatrix_eval.Rd |only inlabru-2.5.3/inlabru/man/evaluate_A.Rd |only inlabru-2.6.0/inlabru/DESCRIPTION | 25 inlabru-2.6.0/inlabru/MD5 | 163 - inlabru-2.6.0/inlabru/NAMESPACE | 117 inlabru-2.6.0/inlabru/NEWS.md | 55 inlabru-2.6.0/inlabru/R/bru.inference.R | 413 ++ inlabru-2.6.0/inlabru/R/bru.integration.R | 23 inlabru-2.6.0/inlabru/R/deprecated.R | 4 inlabru-2.6.0/inlabru/R/dsmdata.tools.R | 16 inlabru-2.6.0/inlabru/R/effect.R | 454 ++- inlabru-2.6.0/inlabru/R/fmesher_crs.R | 342 -- inlabru-2.6.0/inlabru/R/fmesher_sf_mesh.R |only inlabru-2.6.0/inlabru/R/fmesher_sp_mesh.R |only inlabru-2.6.0/inlabru/R/ggplot.R | 6 inlabru-2.6.0/inlabru/R/integration.R | 6 inlabru-2.6.0/inlabru/R/mappers.R | 1462 +++++++--- inlabru-2.6.0/inlabru/R/mesh.R | 6 inlabru-2.6.0/inlabru/R/model.R | 383 +- inlabru-2.6.0/inlabru/R/nlinla.R | 85 inlabru-2.6.0/inlabru/R/plotsample.R | 4 inlabru-2.6.0/inlabru/R/sf_utils.R |only inlabru-2.6.0/inlabru/R/stack.R | 18 inlabru-2.6.0/inlabru/R/transformation.R | 14 inlabru-2.6.0/inlabru/R/utils.R | 217 - inlabru-2.6.0/inlabru/README.md | 5 inlabru-2.6.0/inlabru/build/vignette.rds |binary inlabru-2.6.0/inlabru/inst/doc/bru_mapper.R |only inlabru-2.6.0/inlabru/inst/doc/bru_mapper.Rmd |only inlabru-2.6.0/inlabru/inst/doc/bru_mapper.html |only inlabru-2.6.0/inlabru/inst/doc/component.R |only inlabru-2.6.0/inlabru/inst/doc/component.Rmd |only inlabru-2.6.0/inlabru/inst/doc/component.html |only inlabru-2.6.0/inlabru/inst/doc/linearapprox.R | 83 inlabru-2.6.0/inlabru/inst/doc/linearapprox.Rmd | 65 inlabru-2.6.0/inlabru/inst/doc/linearapprox.html | 133 inlabru-2.6.0/inlabru/inst/doc/method.R | 4 inlabru-2.6.0/inlabru/inst/doc/method.Rmd | 2 inlabru-2.6.0/inlabru/inst/doc/prediction_scores.R |only inlabru-2.6.0/inlabru/inst/doc/prediction_scores.Rmd |only inlabru-2.6.0/inlabru/inst/doc/prediction_scores.html |only inlabru-2.6.0/inlabru/inst/doc/website_examples.R | 31 inlabru-2.6.0/inlabru/inst/doc/website_examples.Rmd | 23 inlabru-2.6.0/inlabru/inst/doc/website_examples.html | 10 inlabru-2.6.0/inlabru/inst/examples/gg.spatial.R | 2 inlabru-2.6.0/inlabru/man/bru_compute_linearisation.Rd | 39 inlabru-2.6.0/inlabru/man/bru_get_mapper.Rd |only inlabru-2.6.0/inlabru/man/bru_like_methods.Rd |only inlabru-2.6.0/inlabru/man/bru_make_stack.Rd | 5 inlabru-2.6.0/inlabru/man/bru_mapper.Rd | 150 - inlabru-2.6.0/inlabru/man/bru_mapper_methods.Rd | 380 ++ inlabru-2.6.0/inlabru/man/bru_model.Rd | 4 inlabru-2.6.0/inlabru/man/bru_transformation.Rd | 11 inlabru-2.6.0/inlabru/man/comp_lin_eval.Rd |only inlabru-2.6.0/inlabru/man/component.Rd | 19 inlabru-2.6.0/inlabru/man/cprod.Rd | 2 inlabru-2.6.0/inlabru/man/eval_spatial.Rd |only inlabru-2.6.0/inlabru/man/evaluate_comp_lin.Rd |only inlabru-2.6.0/inlabru/man/evaluate_comp_simple.Rd |only inlabru-2.6.0/inlabru/man/evaluate_comp_simple_list_subsetting.Rd |only inlabru-2.6.0/inlabru/man/evaluate_effect.Rd | 66 inlabru-2.6.0/inlabru/man/evaluate_inputs.Rd |only inlabru-2.6.0/inlabru/man/evaluate_model.Rd | 9 inlabru-2.6.0/inlabru/man/evaluate_predictor.Rd | 2 inlabru-2.6.0/inlabru/man/figures/README-example-1.png |binary inlabru-2.6.0/inlabru/man/fm_as.Rd |only inlabru-2.6.0/inlabru/man/fm_get_crs.Rd |only inlabru-2.6.0/inlabru/man/fm_identical_CRS.Rd | 4 inlabru-2.6.0/inlabru/man/gg.SpatialGridDataFrame.Rd | 2 inlabru-2.6.0/inlabru/man/gg.SpatialLines.Rd | 2 inlabru-2.6.0/inlabru/man/gg.SpatialPixelsDataFrame.Rd | 2 inlabru-2.6.0/inlabru/man/gg.SpatialPoints.Rd | 2 inlabru-2.6.0/inlabru/man/gg.SpatialPolygons.Rd | 2 inlabru-2.6.0/inlabru/man/gmap.Rd | 2 inlabru-2.6.0/inlabru/man/inlabru-deprecated.Rd | 66 inlabru-2.6.0/inlabru/man/input_eval.Rd | 66 inlabru-2.6.0/inlabru/man/ipoints.Rd | 4 inlabru-2.6.0/inlabru/man/lgcp.Rd | 2 inlabru-2.6.0/inlabru/man/like.Rd | 14 inlabru-2.6.0/inlabru/man/st_check_dim.Rd |only inlabru-2.6.0/inlabru/man/st_check_polygon.Rd |only inlabru-2.6.0/inlabru/man/st_signed_area.Rd |only inlabru-2.6.0/inlabru/tests/testthat/test_bru_sf.R |only inlabru-2.6.0/inlabru/tests/testthat/test_component.R | 150 - inlabru-2.6.0/inlabru/tests/testthat/test_fmesher_sf.R |only inlabru-2.6.0/inlabru/tests/testthat/test_fmesher_sp.R |only inlabru-2.6.0/inlabru/tests/testthat/test_lgcp_1d.R | 63 inlabru-2.6.0/inlabru/tests/testthat/test_lgcp_1d_nonlinear.R | 76 inlabru-2.6.0/inlabru/tests/testthat/test_lgcp_2d.R | 8 inlabru-2.6.0/inlabru/tests/testthat/test_lgcp_2d_covars.R | 7 inlabru-2.6.0/inlabru/tests/testthat/test_linearisation.R | 32 inlabru-2.6.0/inlabru/tests/testthat/test_mapper.R | 58 inlabru-2.6.0/inlabru/tests/testthat/test_predict.R | 46 inlabru-2.6.0/inlabru/vignettes/bru_mapper.Rmd |only inlabru-2.6.0/inlabru/vignettes/component.Rmd |only inlabru-2.6.0/inlabru/vignettes/linearapprox.Rmd | 65 inlabru-2.6.0/inlabru/vignettes/method.Rmd | 2 inlabru-2.6.0/inlabru/vignettes/prediction_scores.Rmd |only inlabru-2.6.0/inlabru/vignettes/website_examples.Rmd | 23 99 files changed, 3881 insertions(+), 1675 deletions(-)
Title: Robust Trimmed Clustering
Description: Provides functions for robust trimmed clustering. The methods are described in Garcia-Escudero (2008) <doi:10.1214/07-AOS515>, Fritz et al. (2012) <doi:10.18637/jss.v047.i12>, Garcia-Escudero et al. (2011) <doi:10.1007/s11222-010-9194-z> and others.
Author: Agustin Mayo Iscar, Luis Angel Garcia Escudero, Heinrich Fritz
Maintainer: Valentin Todorov <valentin.todorov@chello.at>
Diff between tclust versions 1.5-1 dated 2022-04-26 and 1.5-2 dated 2022-10-24
ChangeLog | 8 ++++++++ DESCRIPTION | 8 ++++---- MD5 | 6 +++--- src/tclust_init.c | 2 +- 4 files changed, 16 insertions(+), 8 deletions(-)
Title: Scalable Robust Estimators with High Breakdown Point
Description: Robust Location and Scatter Estimation and Robust
Multivariate Analysis with High Breakdown Point:
principal component analysis (Filzmoser and Todorov (2013), <doi:10.1016/j.ins.2012.10.017>),
linear and quadratic discriminant analysis (Todorov and Pires (2007)),
multivariate tests (Todorov and Filzmoser (2010) <doi:10.1016/j.csda.2009.08.015>),
outlier detection (Todorov et al. (2010) <doi:10.1007/s11634-010-0075-2>).
See also Todorov and Filzmoser (2009) <ISBN-13:978-3838108148>,
Todorov and Filzmoser (2010) <doi:10.18637/jss.v032.i03> and
Boudt et al. (2019) <doi:10.1007/s11222-019-09869-x>.
Author: Valentin Todorov [aut, cre]
Maintainer: Valentin Todorov <valentin.todorov@chello.at>
Diff between rrcov versions 1.7-1 dated 2022-08-12 and 1.7-2 dated 2022-10-24
rrcov-1.7-1/rrcov/build/vignette.rds |only rrcov-1.7-2/rrcov/ChangeLog | 8 +++ rrcov-1.7-2/rrcov/DESCRIPTION | 8 +-- rrcov-1.7-2/rrcov/MD5 | 13 ++---- rrcov-1.7-2/rrcov/README.md | 4 - rrcov-1.7-2/rrcov/inst/NEWS.Rd | 12 +++++ rrcov-1.7-2/rrcov/inst/examples/bm/bmmcd.S | 60 +++++++++++++++-------------- rrcov-1.7-2/rrcov/src/rrcov_init.c | 2 8 files changed, 65 insertions(+), 42 deletions(-)
Title: Periodically Correlated and Periodically Integrated Time Series
Description: Classes and methods for modelling and simulation of
periodically correlated (PC) and periodically integrated time
series. Compute theoretical periodic autocovariances and related
properties of PC autoregressive moving average models. Some original
methods including Boshnakov & Iqelan (2009)
<doi:10.1111/j.1467-9892.2009.00617.x>, Boshnakov (1996)
<doi:10.1111/j.1467-9892.1996.tb00281.x>.
Author: Georgi N. Boshnakov [aut, cre]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between pcts versions 0.15.4 dated 2022-09-28 and 0.15.5 dated 2022-10-24
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NEWS.md | 9 ++++++++- build/partial.rdb |binary inst/doc/pcts_data.html | 6 +++--- man/BareCycle-class.Rd | 4 ++++ man/as_date-methods.Rd | 1 + man/autocorrelations-methods.Rd | 9 ++++++++- man/autocovariances-methods.Rd | 9 ++++++++- man/availStart.Rd | 5 ++++- man/dataFranses1996.Rd | 3 +++ man/pcts-package.Rd | 8 +++++++- tests/testthat/test-fitPM.R | 18 ++++++++++++------ 13 files changed, 73 insertions(+), 29 deletions(-)
Title: Robust PCA by Projection Pursuit
Description: Provides functions for robust PCA by projection pursuit.
The methods are described in Croux et al. (2006) <doi:10.2139/ssrn.968376>,
Croux et al. (2013) <doi:10.1080/00401706.2012.727746>,
Todorov and Filzmoser (2013) <doi:10.1007/978-3-642-33042-1_31>.
Author: Peter Filzmoser, Heinrich Fritz, Klaudius Kalcher
Maintainer: Valentin Todorov <valentin.todorov@chello.at>
Diff between pcaPP versions 2.0-2 dated 2022-07-08 and 2.0-3 dated 2022-10-24
ChangeLog | 10 +++++++++- DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- README.md | 3 +-- src/PCAgrid.cpp | 2 +- src/pcaPP_init.c | 2 +- 6 files changed, 21 insertions(+), 14 deletions(-)
Title: Nanosecond-Resolution Time Support for R
Description: Full 64-bit resolution date and time functionality with
nanosecond granularity is provided, with easy transition to and from
the standard 'POSIXct' type. Three additional classes offer interval,
period and duration functionality for nanosecond-resolution timestamps.
Author: Dirk Eddelbuettel and Leonardo Silvestri
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between nanotime versions 0.3.6 dated 2022-03-06 and 0.3.7 dated 2022-10-24
ChangeLog | 28 ++++++++++++ DESCRIPTION | 8 +-- MD5 | 18 ++++---- R/nanoduration.R | 82 ++++++++++++++++++++++++++++++++++++- R/nanotime.R | 2 build/vignette.rds |binary inst/NEWS.Rd | 15 ++++++ inst/doc/nanotime-introduction.pdf |binary inst/tinytest/test_nanoduration.R | 31 +++++++++++++ man/nanoduration.Rd | 44 +++++++++++++++++++ 10 files changed, 210 insertions(+), 18 deletions(-)
Title: Simulating Data to Study Performance of Clustering Algorithms
Description: The utility of this package is in simulating mixtures of Gaussian
distributions with different levels of overlap between mixture
components. Pairwise overlap, defined as a sum of two
misclassification probabilities, measures the degree of
interaction between components and can be readily employed to
control the clustering complexity of datasets simulated from
mixtures. These datasets can then be used for systematic
performance investigation of clustering and finite mixture
modeling algorithms. Among other capabilities of 'MixSim', there
are computing the exact overlap for Gaussian mixtures,
simulating Gaussian and non-Gaussian data, simulating outliers
and noise variables, calculating various measures of agreement
between two partitionings, and constructing parallel
distribution plots for the graphical display of finite mixture
models.
Author: Volodymyr Melnykov [aut],
Wei-Chen Chen [aut, cre],
Ranjan Maitra [aut],
Robert Davies [ctb] ,
Stephen Moshier [ctb] ,
Rouben Rostamian [ctb]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between MixSim versions 1.1-5 dated 2021-11-06 and 1.1-6 dated 2022-10-24
ChangeLog | 3 +++ DESCRIPTION | 8 ++++---- MD5 | 6 +++--- src/libCEigen.c | 2 +- 4 files changed, 11 insertions(+), 8 deletions(-)
Title: Conformal Time Series Forecasting Using State of Art Machine
Learning Algorithms
Description: Conformal time series forecasting using the caret infrastructure.
It provides access to state-of-the-art machine learning models for forecasting
applications. The hyperparameter of each model is selected based on time
series cross-validation, and forecasting is done recursively.
Author: Resul Akay [aut, cre]
Maintainer: Resul Akay <resulakay1@gmail.com>
Diff between caretForecast versions 0.0.3 dated 2022-05-02 and 0.1.1 dated 2022-10-24
caretForecast-0.0.3/caretForecast/man/accuracy.Rd |only caretForecast-0.0.3/caretForecast/man/assignment_pipe.Rd |only caretForecast-0.0.3/caretForecast/man/autolayer.Rd |only caretForecast-0.0.3/caretForecast/man/autoplot.Rd |only caretForecast-0.0.3/caretForecast/man/forecast.Rd |only caretForecast-0.0.3/caretForecast/man/pipe.Rd |only caretForecast-0.1.1/caretForecast/DESCRIPTION | 22 caretForecast-0.1.1/caretForecast/MD5 | 53 +- caretForecast-0.1.1/caretForecast/NAMESPACE | 10 caretForecast-0.1.1/caretForecast/NEWS.md | 2 caretForecast-0.1.1/caretForecast/R/arml.R | 210 ++------ caretForecast-0.1.1/caretForecast/R/fit_conformal_reg.R |only caretForecast-0.1.1/caretForecast/R/forecast.R | 80 +-- caretForecast-0.1.1/caretForecast/R/predict_conformal.R |only caretForecast-0.1.1/caretForecast/R/utils.R | 169 +----- caretForecast-0.1.1/caretForecast/README.md | 248 ++++++---- caretForecast-0.1.1/caretForecast/man/ARml.Rd | 4 caretForecast-0.1.1/caretForecast/man/conformalRegressor.Rd |only caretForecast-0.1.1/caretForecast/man/figures/README-example-1.png |binary caretForecast-0.1.1/caretForecast/man/figures/README-example-2.png |binary caretForecast-0.1.1/caretForecast/man/figures/README-example-3.png |binary caretForecast-0.1.1/caretForecast/man/figures/README-example-5.png |binary caretForecast-0.1.1/caretForecast/man/figures/README-example2-1.png |only caretForecast-0.1.1/caretForecast/man/figures/README-example3-1.png |only caretForecast-0.1.1/caretForecast/man/figures/README-example4-1.png |only caretForecast-0.1.1/caretForecast/man/figures/README-example4-2.png |only caretForecast-0.1.1/caretForecast/man/figures/README-example5-1.png |only caretForecast-0.1.1/caretForecast/man/figures/README-example5-2.png |only caretForecast-0.1.1/caretForecast/man/figures/README-example6-1.png |only caretForecast-0.1.1/caretForecast/man/figures/README-example6-2.png |only caretForecast-0.1.1/caretForecast/man/figures/README-example7-1.png |only caretForecast-0.1.1/caretForecast/man/forecast.ARml.Rd | 29 - caretForecast-0.1.1/caretForecast/man/get_var_imp.Rd | 2 caretForecast-0.1.1/caretForecast/man/predict.conformalRegressor.Rd |only caretForecast-0.1.1/caretForecast/man/reexports.Rd |only caretForecast-0.1.1/caretForecast/man/split_ts.Rd | 4 caretForecast-0.1.1/caretForecast/tests/testthat/test-conformal_pred.R |only caretForecast-0.1.1/caretForecast/tests/testthat/test-forecast.ARml.R | 18 38 files changed, 346 insertions(+), 505 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-30 3.11
2019-10-30 3.10
2019-10-18 3.9
Title: 1970s BASIC Interpreter
Description: Executes BASIC programs from the 1970s, for historical and
educational purposes. This enables famous examples of early machine
learning, artificial intelligence, natural language processing, cellular
automata, and so on, to be run in their original form.
Author: Mike Lee
Maintainer: Mike Lee <random.deviate@gmail.com>
Diff between brassica versions 1.0.1 dated 2022-09-12 and 1.0.2 dated 2022-10-24
brassica-1.0.1/brassica/inst/BASIC/super_star_trek.bas |only brassica-1.0.2/brassica/DESCRIPTION | 8 +- brassica-1.0.2/brassica/MD5 | 49 ++++++------ brassica-1.0.2/brassica/NAMESPACE | 5 - brassica-1.0.2/brassica/NEWS | 31 +++++++ brassica-1.0.2/brassica/R/brassica_enact.R | 23 ++++- brassica-1.0.2/brassica/R/brassica_eval.R | 40 ++++++---- brassica-1.0.2/brassica/R/brassica_main.R | 7 + brassica-1.0.2/brassica/R/brassica_print.R | 34 ++++++-- brassica-1.0.2/brassica/R/brassica_prog.R | 66 ++++++++++++++--- brassica-1.0.2/brassica/inst/BASIC/animal.bas | 4 - brassica-1.0.2/brassica/inst/BASIC/camel.bas | 2 brassica-1.0.2/brassica/inst/BASIC/chase.bas | 2 brassica-1.0.2/brassica/inst/BASIC/eliza.bas | 7 + brassica-1.0.2/brassica/inst/BASIC/evenwins.bas |only brassica-1.0.2/brassica/inst/BASIC/fourinarow.bas |only brassica-1.0.2/brassica/inst/BASIC/guessit.bas |only brassica-1.0.2/brassica/inst/BASIC/hammurabi.bas | 12 +-- brassica-1.0.2/brassica/inst/BASIC/hexapawn.bas |only brassica-1.0.2/brassica/inst/BASIC/life.bas | 2 brassica-1.0.2/brassica/inst/BASIC/maze.bas | 2 brassica-1.0.2/brassica/inst/BASIC/notone.bas |only brassica-1.0.2/brassica/inst/BASIC/seabattle.bas | 21 ++--- brassica-1.0.2/brassica/inst/BASIC/superstartrek.bas |only brassica-1.0.2/brassica/inst/BASIC/wumpus.bas | 4 + brassica-1.0.2/brassica/inst/doc/BASIC.Rnw | 53 ++++++++----- brassica-1.0.2/brassica/inst/doc/BASIC.pdf |binary brassica-1.0.2/brassica/man/RUN.Rd | 11 +- brassica-1.0.2/brassica/vignettes/BASIC.Rnw | 53 ++++++++----- 29 files changed, 305 insertions(+), 131 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-13 0.4.0
2022-06-04 0.3.2
2022-03-14 0.3.1
2022-01-10 0.1.1
2022-01-06 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-14 0.94.8
2020-10-05 0.94.7
2019-04-10 0.94.6
2018-01-19 0.93.2
2016-01-26 0.93.1
2015-09-07 0.92
2015-02-16 0.91
2014-11-03 0.90
2014-09-08 0.89.9
2014-07-28 0.89.8
2014-07-17 0.89.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-10 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-30 1.2.3