Title: Variable Selection in Partial Least Squares
Description: Interfaces and methods for variable selection in Partial Least
Squares. The methods include filter methods, wrapper methods and embedded
methods. Both regression and classification is supported.
Author: Kristian Hovde Liland [aut, cre]
,
Tahir Mehmood [ctb],
Solve Saeboe [ctb]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between plsVarSel versions 0.9.8 dated 2022-07-16 and 0.9.9 dated 2022-10-29
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS | 5 +++++ R/T2.R | 3 +++ R/WVC.R | 16 +++++++++++++--- man/T2_pls.Rd | 4 ++++ man/WVC_pls.Rd | 10 +++++++++- 7 files changed, 45 insertions(+), 15 deletions(-)
Title: Multivariate and Propensity Score Matching with Balance
Optimization
Description: Provides functions for multivariate and propensity score matching
and for finding optimal balance based on a genetic search algorithm.
A variety of univariate and multivariate metrics to
determine if balance has been obtained are also provided. For
details, see the paper by Jasjeet Sekhon
(2007, <doi:10.18637/jss.v042.i07>).
Author: Jasjeet Singh Sekhon [aut, cre],
Theo Saarinen [aut]
Maintainer: Jasjeet Singh Sekhon <jas.sekhon@yale.edu>
Diff between Matching versions 4.10-2 dated 2022-04-14 and 4.10-4 dated 2022-10-29
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/Matchby.R | 2 +- R/Matching.R | 4 ++-- build/partial.rdb |binary man/GerberGreenImai.Rd | 8 ++++---- 6 files changed, 16 insertions(+), 16 deletions(-)
Title: Render Markdown with 'commonmark'
Description: Render Markdown to full HTML documents with the 'commonmark'
package. Markdown is a plain-text formatting
syntax that can be converted to 'XHTML' or other formats. See
<https://en.wikipedia.org/wiki/Markdown> for more information about Markdown.
Author: JJ Allaire [aut],
Jeffrey Horner [aut],
Yihui Xie [aut, cre] ,
Henrik Bengtsson [ctb],
Jim Hester [ctb],
Yixuan Qiu [ctb],
Kohske Takahashi [ctb],
Adam November [ctb],
Nacho Caballero [ctb],
Jeroen Ooms [ctb],
Thomas Leeper [ctb],
Joe Cheng [ctb],
An [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between markdown versions 1.2 dated 2022-10-19 and 1.3 dated 2022-10-29
markdown-1.2/markdown/R/markdown-package.R |only markdown-1.2/markdown/R/renderMarkdown.R |only markdown-1.2/markdown/R/rpubsUpload.R |only markdown-1.2/markdown/inst/NOTICE |only markdown-1.2/markdown/inst/examples/HTMLOptions.R |only markdown-1.2/markdown/inst/examples/markdownExtensions.R |only markdown-1.2/markdown/inst/include |only markdown-1.2/markdown/man/markdownHTMLOptions.Rd |only markdown-1.2/markdown/man/markdownToHTML.Rd |only markdown-1.2/markdown/man/registeredRenderers.Rd |only markdown-1.2/markdown/man/rendererExists.Rd |only markdown-1.2/markdown/man/rendererOutputType.Rd |only markdown-1.2/markdown/src |only markdown-1.2/markdown/tests/b64EncodeFile.R |only markdown-1.3/markdown/DESCRIPTION | 22 markdown-1.3/markdown/MD5 | 86 +- markdown-1.3/markdown/NAMESPACE | 13 markdown-1.3/markdown/NEWS.md | 16 markdown-1.3/markdown/R/old.R |only markdown-1.3/markdown/R/package.R |only markdown-1.3/markdown/R/render.R |only markdown-1.3/markdown/R/rmarkdown.R |only markdown-1.3/markdown/R/rpubs.R |only markdown-1.3/markdown/R/utils.R |only markdown-1.3/markdown/README.md | 43 - markdown-1.3/markdown/inst/doc/markdown-examples.R | 173 +---- markdown-1.3/markdown/inst/doc/markdown-examples.Rmd | 29 markdown-1.3/markdown/inst/doc/markdown-examples.html | 437 ++++----------- markdown-1.3/markdown/inst/doc/markdown-output.R | 173 +---- markdown-1.3/markdown/inst/doc/markdown-output.html | 399 +++---------- markdown-1.3/markdown/inst/examples/render-options.R |only markdown-1.3/markdown/inst/resources/markdown.latex |only markdown-1.3/markdown/inst/resources/mathjax.html | 4 markdown-1.3/markdown/man/html_format.Rd |only markdown-1.3/markdown/man/mark.Rd |only markdown-1.3/markdown/man/markdown.Rd | 27 markdown-1.3/markdown/man/markdownExtensions.Rd | 149 ----- markdown-1.3/markdown/man/markdown_options.Rd |only markdown-1.3/markdown/man/renderMarkdown.Rd | 76 -- markdown-1.3/markdown/man/rpubsUpload.Rd | 2 markdown-1.3/markdown/man/smartypants.Rd | 41 - markdown-1.3/markdown/tests/empty.R | 4 markdown-1.3/markdown/tests/tests.R | 12 markdown-1.3/markdown/tests/tests.Rout.save | 285 +++------ markdown-1.3/markdown/vignettes/markdown-examples.Rmd | 29 45 files changed, 579 insertions(+), 1441 deletions(-)
Title: eBird Data Extraction and Processing in R
Description: Extract and process bird sightings records from
eBird (<http://ebird.org>), an online tool for recording bird
observations. Public access to the full eBird database is via the
eBird Basic Dataset (EBD; see <http://ebird.org/ebird/data/download>
for access), a downloadable text file. This package is an interface to
AWK for extracting data from the EBD based on taxonomic, spatial, or
temporal filters, to produce a manageable file size that can be
imported into R.
Author: Matthew Strimas-Mackey [aut, cre]
,
Eliot Miller [aut],
Wesley Hochachka [aut],
Cornell Lab of Ornithology [cph]
Maintainer: Matthew Strimas-Mackey <mes335@cornell.edu>
Diff between auk versions 0.5.1 dated 2021-10-27 and 0.6.0 dated 2022-10-29
DESCRIPTION | 10 MD5 | 41 +- NEWS.md | 8 R/auk-package.R | 1 R/auk-unique.R | 3 R/auk-version.R | 6 R/data.R | 1 build/vignette.rds |binary data/ebird_taxonomy.rda |binary inst/doc/auk.html | 644 ++++++++++++++++++++++++++++++++++++++-------- inst/doc/development.Rmd | 2 inst/doc/development.html | 443 ++++++++++++++++++++++++++++--- man/auk.Rd | 1 man/auk_filter.Rd | 6 man/auk_zerofill.Rd | 8 man/bcr_codes.Rd | 3 man/ebird_states.Rd | 3 man/ebird_taxonomy.Rd | 3 man/figures |only man/read_ebd.Rd | 15 - man/valid_protocols.Rd | 7 vignettes/development.Rmd | 2 22 files changed, 1018 insertions(+), 189 deletions(-)
Title: Spatial Seemingly Unrelated Regression Models
Description: A collection of functions to test and estimate Seemingly
Unrelated Regression (usually called SUR) models, with spatial structure, by maximum
likelihood and three-stage least squares. The package estimates the
most common spatial specifications, that is, SUR with Spatial Lag of
X regressors (called SUR-SLX), SUR with Spatial Lag Model (called SUR-SLM),
SUR with Spatial Error Model (called SUR-SEM), SUR with Spatial Durbin Model (called SUR-SDM),
SUR with Spatial Durbin Error Model (called SUR-SDEM),
SUR with Spatial Autoregressive terms and Spatial Autoregressive
Disturbances (called SUR-SARAR), SUR-SARAR with Spatial Lag of X
regressors (called SUR-GNM) and SUR with Spatially Independent Model (called SUR-SIM).
The methodology of these models can be found in next references
Minguez, R., Lopez, F.A., and Mur, J. (2022) <doi:10.18637/jss.v104.i11>
Mur, J., Lopez, F.A., and Herrera, M. (2010) <doi:10.1080/17421772.2010.516443>
Lopez, F.A., Mur, J., and Angulo, A. (2014) <d [...truncated...]
Author: Ana Angulo [aut],
Fernando A Lopez [aut],
Roman Minguez [aut, cre],
Jesus Mur [aut]
Maintainer: Roman Minguez <roman.minguez@uclm.es>
Diff between spsur versions 1.0.2.4 dated 2022-08-31 and 1.0.2.5 dated 2022-10-29
DESCRIPTION | 13 +++--- MD5 | 72 ++++++++++++++++++------------------ R/dgp_spSUR.R | 5 ++ R/impactspsur.R | 8 +++- R/lmtestspsur.R | 6 +++ R/lr_betas.R | 6 +++ R/spSUR-package.R | 7 +++ R/spsur3sls.R | 14 +++++-- R/spsurgs3sls.R | 6 +++ R/spsurml.R | 6 +++ R/spsurtime.R | 6 +++ R/wald_betas.R | 7 +++ build/vignette.rds |binary inst/CITATION | 58 +++++++++++++++++++---------- inst/doc/Vignette_User_Guide.Rmd | 4 +- inst/doc/Vignette_User_Guide.html | 24 +++++------- inst/doc/montecarlo_spsur_spse.Rmd | 4 +- inst/doc/montecarlo_spsur_spse.html | 30 ++++++++------- inst/doc/spsur-vs-spatialreg.Rmd | 4 +- inst/doc/spsur-vs-spatialreg.html | 24 +++++------- inst/doc/spsur_pysal.Rmd | 4 +- inst/doc/spsur_pysal.html | 46 +++++++++++------------ man/dgp_spsur.Rd | 5 ++ man/impactspsur.Rd | 7 +++ man/lmtestspsur.Rd | 6 +++ man/lr_betas.Rd | 6 +++ man/spsur-package.Rd | 7 +++ man/spsur3sls.Rd | 14 +++++-- man/spsurgs3sls.Rd | 6 +++ man/spsurml.Rd | 6 +++ man/spsurtime.Rd | 6 +++ man/wald_betas.Rd | 7 +++ vignettes/Vignette_User_Guide.Rmd | 4 +- vignettes/bibliosure.bib | 10 +++++ vignettes/montecarlo_spsur_spse.Rmd | 4 +- vignettes/spsur-vs-spatialreg.Rmd | 4 +- vignettes/spsur_pysal.Rmd | 4 +- 37 files changed, 298 insertions(+), 152 deletions(-)
Title: Short Sprints
Description: Create short sprint (<6sec) profiles using the split times or the radar gun data.
Mono-exponential equation is used to estimate maximal sprinting speed (MSS), relative acceleration (TAU),
and other parameters such us maximal acceleration (MAC) and maximal relative power (PMAX). These parameters
can be used to predict kinematic and kinetics variables and to compare individuals. The modeling method utilized
in this package is based on the works of Chelly SM, Denis C. (2001) <doi: 10.1097/00005768-200102000-00024>,
Clark KP, Rieger RH, Bruno RF, Stearne DJ. (2017) <doi: 10.1519/JSC.0000000000002081>,
Furusawa K, Hill AV, Parkinson JL (1927) <doi: 10.1098/rspb.1927.0035>,
Greene PR. (1986) <doi: 10.1016/0025-5564(86)90063-5>, Samozino P. and Peyrot N., et al (2022)
<doi: 10.1111/sms.14097>, and Samozino P. (2018) <doi: 10.1007/978-3-319-05633-3_11>.
Author: Mladen Jovanović [aut, cre],
Jason D. Vescovi [dtc]
Maintainer: Mladen Jovanović <coach.mladen.jovanovic@gmail.com>
Diff between shorts versions 2.1.0 dated 2022-09-26 and 2.3.0 dated 2022-10-29
DESCRIPTION | 10 MD5 | 25 +- NAMESPACE | 9 NEWS.md | 17 + R/convert-FV.R |only R/find-functions.R | 328 ------------------------------ R/find-optimal-distance.R |only R/optimal-functions.R |only R/probe-functions.R |only README.md | 156 ++++++++++---- inst/CITATION | 4 man/figures/README-unnamed-chunk-14-1.png |binary man/figures/README-unnamed-chunk-24-1.png |binary man/find_functions.Rd | 101 --------- man/find_optimal_distance.Rd |only man/optimal_functions.Rd |only man/probe_functions.Rd |only 17 files changed, 158 insertions(+), 492 deletions(-)
Title: Multiblock Data Fusion in Statistics and Machine Learning
Description: Functions and datasets to support Smilde, Næs and Liland (2021, ISBN: 978-1-119-60096-1)
"Multiblock Data Fusion in Statistics and Machine Learning - Applications in the Natural and Life Sciences".
This implements and imports a large collection of methods for multiblock data analysis with common interfaces, result- and plotting
functions, several real data sets and six vignettes covering a range different applications.
Author: Kristian Hovde Liland [aut, cre]
,
Solve Saeboe [ctb],
Stefan Schrunner [rev]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between multiblock versions 0.8.2 dated 2022-06-07 and 0.8.3 dated 2022-10-29
DESCRIPTION | 10 MD5 | 62 ++-- NAMESPACE | 4 NEWS | 11 R/direct_export.R | 4 R/multiblock_plots.R | 64 ++++- R/multiblock_results.R | 2 R/rosa.R | 9 R/sopls.R | 13 - R/sopls_plots.R | 130 +++++++++- R/sopls_results.R | 3 R/supervised.R | 77 +++++- R/unsupervised.R | 38 ++- build/vignette.rds |binary inst/doc/vignette_A_data.html | 30 +- inst/doc/vignette_B_basic.html | 26 +- inst/doc/vignette_C_unsupervised.html | 63 ++--- inst/doc/vignette_D_asca.html | 30 +- inst/doc/vignette_E_supervised.R | 1 inst/doc/vignette_E_supervised.Rmd | 1 inst/doc/vignette_E_supervised.html | 422 +++++++++++++++++----------------- inst/doc/vignette_F_complex.html | 31 +- man/disco.Rd | 7 man/mbpls.Rd | 14 + man/multiblock_plots.Rd | 37 ++ man/multiblock_results.Rd | 2 man/reexports.Rd | 3 man/rosa.Rd | 3 man/smbpls.Rd | 14 + man/sopls.Rd | 7 man/sopls_plots.Rd | 35 ++ vignettes/vignette_E_supervised.Rmd | 1 32 files changed, 803 insertions(+), 351 deletions(-)
Title: R at the Command-Line via 'r'
Description: A scripting and command-line front-end
is provided by 'r' (aka 'littler') as a lightweight binary wrapper around
the GNU R language and environment for statistical computing and graphics.
While R can be used in batch mode, the r binary adds full support for
both 'shebang'-style scripting (i.e. using a hash-mark-exclamation-path
expression as the first line in scripts) as well as command-line use in
standard Unix pipelines. In other words, r provides the R language without
the environment.
Author: Dirk Eddelbuettel and Jeff Horner
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between littler versions 0.3.16 dated 2022-08-28 and 0.3.17 dated 2022-10-29
ChangeLog | 23 +++++++++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- configure | 18 +++++++++--------- configure.ac | 2 +- inst/NEWS.Rd | 14 ++++++++++++++ inst/examples/install2.r | 4 ++-- inst/examples/installBioc.r | 2 +- src/littler.c | 11 +++++------ 9 files changed, 67 insertions(+), 31 deletions(-)
Title: Interval Censored Recursive Forests
Description: Implements interval censored recursive forests (ICRF) based on Cho, Jewell, and Kosorok (2021+).
ICRF is a variant of random forests where the outcome variable is interval censored survival data.
It can be used for usual right censored data and current status data as well.
A recursion technique is used to improve accuracy and smoothed survival curves are provided.
Author: Hunyong Cho [aut, cre],
Nicholas P Jewell [aut],
Michael R Kosorok [aut],
Leo Breiman [ctb] ,
Adele Cutler [ctb] ,
Andy Liaw [ctb] ,
Matthew Wiener [ctb] ,
Alain Vandal Robert Gentleman [ctb] ,
Merck & Co. Inc. [cph] ,
Alain Vandal Robert Gentleman [ [...truncated...]
Maintainer: Hunyong Cho <hunyong.cho@gmail.com>
Diff between icrf versions 2.0.0 dated 2021-05-17 and 2.0.2 dated 2022-10-29
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 9 +++++++++ src/npmle.c | 4 +++- 4 files changed, 19 insertions(+), 8 deletions(-)
Title: Analyze and Create Elegant Directed Acyclic Graphs
Description: Tidy, analyze, and plot directed acyclic graphs (DAGs).
'ggdag' is built on top of 'dagitty', an R package that uses the
'DAGitty' web tool (<http://dagitty.net>) for creating and analyzing
DAGs. 'ggdag' makes it easy to tidy and plot 'dagitty' objects using
'ggplot2' and 'ggraph', as well as common analytic and graphical
functions, such as determining adjustment sets and node relationships.
Author: Malcolm Barrett [aut, cre]
Maintainer: Malcolm Barrett <malcolmbarrett@gmail.com>
Diff between ggdag versions 0.2.6 dated 2022-08-26 and 0.2.7 dated 2022-10-29
DESCRIPTION | 10 MD5 | 150 +-- NAMESPACE | 1 NEWS.md | 5 R/StatsandGeoms.R | 343 +++----- R/adjustment_sets.R | 87 +- R/as_tbl_graph.R | 8 R/canonical.R | 12 R/colliders.R | 44 - R/dag_labels.R | 11 R/dagify.R | 50 - R/drelationship.R | 91 +- R/equivalence.R | 39 R/exogenous.R | 24 R/geom_dag.R | 427 +++++----- R/ggdag.R | 50 - R/instrumental.R | 29 R/paths.R | 160 ++- R/quick_plots.R | 84 + R/relations.R | 232 +++-- R/simulate_data.R | 6 R/status.R | 40 R/themes.R | 82 + R/tidy_dag.R | 74 + R/utils.R | 42 README.md | 49 - inst/doc/bias-structures.R | 180 ++-- inst/doc/bias-structures.Rmd | 180 ++-- inst/doc/bias-structures.html | 218 ++--- inst/doc/intro-to-dags.R | 92 +- inst/doc/intro-to-dags.Rmd | 88 +- inst/doc/intro-to-dags.html | 108 +- inst/doc/intro-to-ggdag.R | 88 +- inst/doc/intro-to-ggdag.Rmd | 88 +- inst/doc/intro-to-ggdag.html | 164 +-- man/adjustment_sets.Rd | 8 man/as_tbl_graph.Rd | 8 man/canonicalize.Rd | 2 man/coordinates.Rd | 4 man/d_relationship.Rd | 3 man/dag.Rd | 1 man/dagify.Rd | 49 - man/figures/ggdag_geoms-1.png |binary man/geom_dag_collider_edges.Rd | 41 man/geom_dag_edge_functions.Rd | 12 man/geom_dag_edges.Rd | 14 man/geom_dag_text.Rd | 22 man/ggdag.Rd | 6 man/ggdag_classic.Rd | 6 man/label.Rd | 6 man/node_point.Rd | 18 man/remove_axes.Rd | 4 man/repel.Rd | 44 - man/status.Rd | 3 man/tidy_dagitty.Rd | 10 man/variable_family.Rd | 10 tests/testthat/_snaps/drelationship/ggdag-dconnected-d-separates-x-and-y.svg | 28 tests/testthat/_snaps/drelationship/ggdag-drelationship-d-connects-xy-no-collider.svg | 24 tests/testthat/_snaps/drelationship/ggdag-drelationship-d-separates-x-and-y.svg | 28 tests/testthat/_snaps/drelationship/ggdag-dseparated-d-separates-x-and-y.svg | 28 tests/testthat/_snaps/equivalence/ggdag-equivalent-class-plots-no-reversible-edges.svg | 6 tests/testthat/_snaps/paths/ggdag-paths-draws-2-open-paths.svg | 5 tests/testthat/_snaps/paths/ggdag-paths-fan-draws-4-open-paths.svg | 202 ++-- tests/testthat/helper-load_dag.R | 2 tests/testthat/helper-vdiffr.R | 1 tests/testthat/test-adjustment_sets.R | 3 tests/testthat/test-canonical.R | 2 tests/testthat/test-dagify.R | 2 tests/testthat/test-equivalence.R | 9 tests/testthat/test-geom_dag.R | 37 tests/testthat/test-paths.R | 6 tests/testthat/test-themes.R | 1 tests/testthat/test-tidy_dag.R | 45 - vignettes/bias-structures.Rmd | 180 ++-- vignettes/intro-to-dags.Rmd | 88 +- vignettes/intro-to-ggdag.Rmd | 88 +- 76 files changed, 2481 insertions(+), 1931 deletions(-)
Title: Circular-Linear Copulas with Angular Symmetry for Movement Data
Description: Classes (S4) of circular-linear, symmetric copulas with corresponding
methods, extending the 'copula' package. These copulas are especially useful
for modeling correlation in discrete-time movement data. Methods for density,
(conditional) distribution, random number generation, bivariate dependence
measures and fitting parameters using maximum likelihood and other
approaches. The package also contains methods for visualizing movement data
and copulas.
Author: Florian Hodel [aut, cre]
Maintainer: Florian Hodel <florian.hodel@yahoo.com>
Diff between cylcop versions 0.1.0 dated 2021-08-06 and 0.2.0 dated 2022-10-29
cylcop-0.1.0/cylcop/man/circ_plot.Rd |only cylcop-0.1.0/cylcop/man/cop_plot.Rd |only cylcop-0.1.0/cylcop/man/cop_scat_plot.Rd |only cylcop-0.1.0/cylcop/man/make_traj.Rd |only cylcop-0.1.0/cylcop/man/mle.mixedvonmises.Rd |only cylcop-0.1.0/cylcop/man/optCor.Rd |only cylcop-0.1.0/cylcop/man/optML.Rd |only cylcop-0.1.0/cylcop/man/qmixedvonmises.Rd |only cylcop-0.1.0/cylcop/man/scat_plot.Rd |only cylcop-0.1.0/cylcop/man/setCopParam.Rd |only cylcop-0.1.0/cylcop/man/traj_plot.Rd |only cylcop-0.2.0/cylcop/DESCRIPTION | 24 cylcop-0.2.0/cylcop/MD5 | 143 cylcop-0.2.0/cylcop/NAMESPACE | 72 cylcop-0.2.0/cylcop/NEWS.md | 80 cylcop-0.2.0/cylcop/R/Ccond.R | 56 cylcop-0.2.0/cylcop/R/aaaglobal.R | 2 cylcop-0.2.0/cylcop/R/correlation.R | 140 cylcop-0.2.0/cylcop/R/cyl_cop_class.R | 189 - cylcop-0.2.0/cylcop/R/cyl_cubsec.R | 51 cylcop-0.2.0/cylcop/R/cyl_quadsec.R | 34 cylcop-0.2.0/cylcop/R/cyl_rect_combine.R | 597 +-- cylcop-0.2.0/cylcop/R/cyl_rot_combine.R | 26 cylcop-0.2.0/cylcop/R/cyl_vonmises.R | 64 cylcop-0.2.0/cylcop/R/cylcop-package.R | 15 cylcop-0.2.0/cylcop/R/density.R | 98 cylcop-0.2.0/cylcop/R/deprecated.R |only cylcop-0.2.0/cylcop/R/fit_cop_corr.R | 205 - cylcop-0.2.0/cylcop/R/fit_cop_mle.R | 137 cylcop-0.2.0/cylcop/R/fit_margin.R | 615 ++- cylcop-0.2.0/cylcop/R/gof.R |only cylcop-0.2.0/cylcop/R/joint_distr.R |only cylcop-0.2.0/cylcop/R/mixed_linear.R |only cylcop-0.2.0/cylcop/R/mixedvonmises.R | 633 ++- cylcop-0.2.0/cylcop/R/opt_auto.R | 1026 ++---- cylcop-0.2.0/cylcop/R/plotting_functions.R | 2243 +++++++++++--- cylcop-0.2.0/cylcop/R/simulate_trajectory.R | 364 +- cylcop-0.2.0/cylcop/R/utils.R | 366 ++ cylcop-0.2.0/cylcop/R/wrappedcauchy.R | 172 - cylcop-0.2.0/cylcop/build/partial.rdb |binary cylcop-0.2.0/cylcop/inst/CITATION | 18 cylcop-0.2.0/cylcop/inst/REFERENCES.bib | 459 +- cylcop-0.2.0/cylcop/man/Cramer_vonMises.Rd |only cylcop-0.2.0/cylcop/man/Cylcop.Rd | 272 - cylcop-0.2.0/cylcop/man/angstep2xy.Rd | 2 cylcop-0.2.0/cylcop/man/bearing.Rd | 4 cylcop-0.2.0/cylcop/man/ccylcop.Rd | 162 - cylcop-0.2.0/cylcop/man/cor_cyl.Rd | 128 cylcop-0.2.0/cylcop/man/cyl_cubsec-class.Rd | 93 cylcop-0.2.0/cylcop/man/cyl_cubsec.Rd | 70 cylcop-0.2.0/cylcop/man/cyl_quadsec-class.Rd | 96 cylcop-0.2.0/cylcop/man/cyl_quadsec.Rd | 64 cylcop-0.2.0/cylcop/man/cyl_rect_combine-class.Rd | 156 cylcop-0.2.0/cylcop/man/cyl_rect_combine.Rd | 165 - cylcop-0.2.0/cylcop/man/cyl_rot_combine.Rd | 80 cylcop-0.2.0/cylcop/man/cyl_vonmises-class.Rd | 98 cylcop-0.2.0/cylcop/man/cyl_vonmises.Rd | 86 cylcop-0.2.0/cylcop/man/cylcop-deprecated.Rd |only cylcop-0.2.0/cylcop/man/cylcop-package.Rd | 44 cylcop-0.2.0/cylcop/man/dens.Rd | 132 cylcop-0.2.0/cylcop/man/fit_angle.Rd | 73 cylcop-0.2.0/cylcop/man/fit_cylcop_cor.Rd |only cylcop-0.2.0/cylcop/man/fit_cylcop_ml.Rd |only cylcop-0.2.0/cylcop/man/fit_steplength.Rd | 184 - cylcop-0.2.0/cylcop/man/full2half_circ.Rd | 2 cylcop-0.2.0/cylcop/man/gammamix.Rd |only cylcop-0.2.0/cylcop/man/half2full_circ.Rd | 2 cylcop-0.2.0/cylcop/man/joint.Rd |only cylcop-0.2.0/cylcop/man/lnormmix.Rd |only cylcop-0.2.0/cylcop/man/mi_cyl.Rd | 226 - cylcop-0.2.0/cylcop/man/mle.vonmisesmix.Rd |only cylcop-0.2.0/cylcop/man/normmix.Rd |only cylcop-0.2.0/cylcop/man/numerical_conditional_cop.Rd | 82 cylcop-0.2.0/cylcop/man/opt_auto.Rd | 96 cylcop-0.2.0/cylcop/man/opt_circ_bw.Rd | 75 cylcop-0.2.0/cylcop/man/opt_lin_bw.Rd | 101 cylcop-0.2.0/cylcop/man/plot-cyl_copula-missing-method.Rd | 65 cylcop-0.2.0/cylcop/man/plot_circ_hist.Rd |only cylcop-0.2.0/cylcop/man/plot_cop_scat.Rd |only cylcop-0.2.0/cylcop/man/plot_cop_surf.Rd |only cylcop-0.2.0/cylcop/man/plot_joint_box.Rd |only cylcop-0.2.0/cylcop/man/plot_joint_circ.Rd |only cylcop-0.2.0/cylcop/man/plot_joint_scat.Rd |only cylcop-0.2.0/cylcop/man/plot_track.Rd |only cylcop-0.2.0/cylcop/man/set_cop_param.Rd |only cylcop-0.2.0/cylcop/man/traj_get.Rd |only cylcop-0.2.0/cylcop/man/traj_sim.Rd |only cylcop-0.2.0/cylcop/man/vonmisesmix.Rd |only cylcop-0.2.0/cylcop/man/wasserstein.Rd |only cylcop-0.2.0/cylcop/man/weibullmix.Rd |only cylcop-0.2.0/cylcop/man/wrappedcauchy.Rd | 187 - 91 files changed, 6886 insertions(+), 3688 deletions(-)
Title: Bivariate Zero-Inflated Negative Binomial Model Estimator
Description: Provides a maximum likelihood estimation of Bivariate Zero-Inflated Negative Binomial (BZINB) model or the nested model parameters. Also estimates the underlying correlation of the a pair of count data. See Cho, H., Liu, C., Preisser, J., and Wu, D. (In preparation) for details.
Author: Hunyong Cho, Chuwen Liu, Jinyoung Park, Di Wu
Maintainer: Hunyong Cho <hunyong.cho@gmail.com>
Diff between bzinb versions 1.0.4 dated 2019-12-07 and 1.0.6 dated 2022-10-29
DESCRIPTION | 11 +++++------ MD5 | 16 ++++++++-------- man/bnb.Rd | 12 ++++++++++-- man/bzinb.Rd | 11 +++++++++-- man/bzinb.se.Rd | 3 +-- man/bzip.b.Rd | 10 ++++++++-- man/pairwise.bzinb.Rd | 10 ++++++++-- src/RcppExports.cpp | 5 +++++ src/opt.cpp | 2 +- 9 files changed, 55 insertions(+), 25 deletions(-)
Title: Parsing and Code Generation Functions for 'rxode2'
Description: Provides the parsing needed for 'rxode2' (Wang, Hallow and
James (2016) <doi:10.1002/psp4.12052>). It also provides the 'stan'
based advan linear compartment model solutions with gradients
(Carpenter et al (2015), <arXiv:1509.07164>) needed in 'nlmixr2'
(Fidler et al (2019) <doi:10.1002/psp4.12445>).
This split will reduce computational burden of recompiling 'rxode2'.
Author: Matthew L. Fidler [aut, cre] ,
Wenping Wang [aut],
Richard Upton [ctb]
Maintainer: Matthew L. Fidler <matthew.fidler@gmail.com>
Diff between rxode2parse versions 2.0.11 dated 2022-10-09 and 2.0.12 dated 2022-10-29
rxode2parse-2.0.11/rxode2parse/src/ver.h |only rxode2parse-2.0.12/rxode2parse/DESCRIPTION | 15 rxode2parse-2.0.12/rxode2parse/MD5 | 61 +- rxode2parse-2.0.12/rxode2parse/NAMESPACE | 6 rxode2parse-2.0.12/rxode2parse/NEWS.md | 8 rxode2parse-2.0.12/rxode2parse/R/000.R |only rxode2parse-2.0.12/rxode2parse/R/d.R |only rxode2parse-2.0.12/rxode2parse/R/dfIni.R | 2 rxode2parse-2.0.12/rxode2parse/R/intern.R |only rxode2parse-2.0.12/rxode2parse/R/parseFuns.R | 2 rxode2parse-2.0.12/rxode2parse/R/rxode2parse_md5.R | 2 rxode2parse-2.0.12/rxode2parse/R/tran.R | 63 ++ rxode2parse-2.0.12/rxode2parse/R/zzz.R | 2 rxode2parse-2.0.12/rxode2parse/README.md | 4 rxode2parse-2.0.12/rxode2parse/build/refresh.R | 34 - rxode2parse-2.0.12/rxode2parse/inst/include/rxode2_model_shared.c | 20 rxode2parse-2.0.12/rxode2parse/inst/include/rxode2_model_shared.h | 3 rxode2parse-2.0.12/rxode2parse/inst/include/rxode2parse.h | 282 ---------- rxode2parse-2.0.12/rxode2parse/inst/include/rxode2parseSbuf.h | 2 rxode2parse-2.0.12/rxode2parse/inst/include/rxode2parseStruct.h |only rxode2parse-2.0.12/rxode2parse/inst/include/rxode2parseVer.h | 4 rxode2parse-2.0.12/rxode2parse/inst/include/sbuf.c | 2 rxode2parse-2.0.12/rxode2parse/inst/tools/workaround.R | 19 rxode2parse-2.0.12/rxode2parse/man/rxode2parseAssignPackagesToLoad.Rd |only rxode2parse-2.0.12/rxode2parse/man/rxode2parseAssignPointerTranslation.Rd |only rxode2parse-2.0.12/rxode2parse/man/rxode2parseD.Rd |only rxode2parse-2.0.12/rxode2parse/man/rxode2parseGetPointerAssignment.Rd |only rxode2parse-2.0.12/rxode2parse/src/codegen.c | 13 rxode2parse-2.0.12/rxode2parse/src/codegen.h | 9 rxode2parse-2.0.12/rxode2parse/src/codegen2.h | 20 rxode2parse-2.0.12/rxode2parse/src/genModelVars.h | 80 +- rxode2parse-2.0.12/rxode2parse/src/init.c | 19 rxode2parse-2.0.12/rxode2parse/src/lincmtB.cpp | 26 rxode2parse-2.0.12/rxode2parse/src/qs.cpp | 6 rxode2parse-2.0.12/rxode2parse/src/sbuf.c | 2 rxode2parse-2.0.12/rxode2parse/src/tran.c | 7 36 files changed, 296 insertions(+), 417 deletions(-)
More information about ROI.plugin.highs at CRAN
Permanent link
Title: Time Aware Tibbles
Description: Built on top of the 'tibble' package, 'tibbletime' is an extension
that allows for the creation of time aware tibbles. Some immediate
advantages of this include: the ability to perform time-based subsetting
on tibbles, quickly summarising and aggregating results by time periods,
and creating columns that can be used as 'dplyr' time-based groups.
Author: Davis Vaughan [aut, cre],
Matt Dancho [aut]
Maintainer: Davis Vaughan <davis@rstudio.com>
Diff between tibbletime versions 0.1.6 dated 2020-07-21 and 0.1.7 dated 2022-10-29
DESCRIPTION | 22 - MD5 | 44 +- NAMESPACE | 4 NEWS.md | 10 R/compat-tidyr.R | 52 +- R/data.R | 4 R/print.R | 50 +- README.md | 309 -------------- build/vignette.rds |binary inst/doc/TT-01-time-based-filtering.html | 351 +++++++++------- inst/doc/TT-02-changing-time-periods.html | 294 +++++++------ inst/doc/TT-03-rollify-for-rolling-analysis.R | 6 inst/doc/TT-03-rollify-for-rolling-analysis.Rmd | 6 inst/doc/TT-03-rollify-for-rolling-analysis.html | 503 ++++++++++++----------- inst/doc/TT-04-use-with-dplyr.html | 395 +++++++++--------- man/FANG.Rd | 2 man/FB.Rd | 2 man/tbl_time.Rd | 2 src/RcppExports.cpp | 5 src/sorted_range_search.cpp | 2 tests/testthat/test_compat-tidyr.R | 5 tests/testthat/test_print.R | 10 vignettes/TT-03-rollify-for-rolling-analysis.Rmd | 6 23 files changed, 1016 insertions(+), 1068 deletions(-)
Title: Implements the SoftBart Algorithm
Description: Implements the SoftBart model of described by Linero and Yang (2018) <doi:10.1111/rssb.12293>, with the optional use of a sparsity-inducing prior to allow for variable selection. For usability, the package maintains the same style as the 'BayesTree' package.
Author: Antonio R. Linero [aut, cre]
Maintainer: Antonio R. Linero <antonio.linero@austin.utexas.edu>
Diff between SoftBart versions 1.0.0 dated 2022-10-12 and 1.0.1 dated 2022-10-29
DESCRIPTION | 8 ++++---- MD5 | 11 +++++++++-- NEWS.md |only build |only inst/CITATION |only inst/doc |only src/RcppExports.cpp | 5 ----- vignettes |only 8 files changed, 13 insertions(+), 11 deletions(-)
Title: Port of 'Dparser' Package
Description: A Scannerless GLR parser/parser generator. Note that GLR standing for "generalized LR", where L stands for "left-to-right" and
R stands for "rightmost (derivation)". For more information see <https://en.wikipedia.org/wiki/GLR_parser>. This parser is based on the Tomita
(1987) algorithm. (Paper can be found at <https://aclanthology.org/P84-1073.pdf>).
The original 'dparser' package documentation can be found at <https://dparser.sourceforge.net/>. This allows you to add mini-languages to R (like
RxODE's ODE mini-language Wang, Hallow, and James 2015 <DOI:10.1002/psp4.12052>) or to parse other languages like 'NONMEM' to automatically translate
them to R code. To use this in your code, add a LinkingTo dparser in your DESCRIPTION file and instead of using #include <dparse.h> use
#include <dparser.h>. This also provides a R-based port of the make_dparser <https://dparser.sourceforge.net/d/make_dparser.cat> command called
mkdparser(). Additiona [...truncated...]
Author: Matthew Fidler [aut, cre],
John Plevyak [aut, cph]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between dparser versions 1.3.1-7 dated 2022-10-09 and 1.3.1-8 dated 2022-10-29
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ src/dparser.h | 4 ++-- src/util.c | 4 ++-- src/version.c | 4 ++-- 6 files changed, 18 insertions(+), 14 deletions(-)
Title: Fast and Easy Data Cleaning
Description: Data cleaning functions for classes logical,
factor, numeric, character, currency and Date to make
data cleaning fast and easy. Relying on very few dependencies, it
provides smart guessing, but with user options to override
anything if needed.
Author: Matthijs S. Berends [aut, cre]
Maintainer: Matthijs S. Berends <m.s.berends@umcg.nl>
Diff between cleaner versions 1.5.3 dated 2021-06-13 and 1.5.4 dated 2022-10-29
DESCRIPTION | 15 ++++---- MD5 | 51 +++++++++++++++-------------- NEWS.md | 16 +++++++++ R/clean.R | 67 ++++++++++++++++++++++++--------------- R/currency.R | 35 ++++++++++---------- R/data.R | 4 +- R/format_datetime.R | 4 +- R/format_names.R | 4 +- R/format_p_value.R | 4 +- R/freq.R | 7 ++-- R/helpers.R | 23 ++----------- R/na_replace.R | 4 +- R/percentage.R | 28 ++++++++-------- R/rdate.R | 4 +- R/regex_true_false.R | 4 +- R/zzz.R | 12 +++++- README.md | 2 - inst |only man/clean.Rd | 4 -- man/freq.Rd | 8 +--- man/percentage.Rd | 8 ++++ tests/testthat.R | 4 +- tests/testthat/test-clean.R | 23 ++++++++++++- tests/testthat/test-currency.R | 5 +- tests/testthat/test-freq.R | 4 +- tests/testthat/test-percentage.R | 4 +- tests/testthat/test-rdate.R | 8 ++-- 27 files changed, 204 insertions(+), 148 deletions(-)
Title: Feature Selection and Ranking via Simultaneous Perturbation
Stochastic Approximation
Description: An implementation of feature selection, weighting and ranking via simultaneous perturbation
stochastic approximation (SPSA). The SPSA-FSR algorithm searches for a locally optimal set of
features that yield the best predictive performance using some error measures such as mean
squared error (for regression problems) and accuracy rate (for classification problems).
Author: David Akman [aut, cre],
Babak Abbasi [aut, ctb],
Yong Kai Wong [aut, ctb],
Guo Feng Anders Yeo [aut, ctb],
Zeren D. Yenice [ctb]
Maintainer: David Akman <david.v.akman@gmail.com>
Diff between spFSR versions 1.0.0 dated 2018-05-11 and 2.0.1 dated 2022-10-29
spFSR-1.0.0/spFSR/build/vignette.rds |only spFSR-1.0.0/spFSR/inst |only spFSR-1.0.0/spFSR/vignettes |only spFSR-2.0.1/spFSR/DESCRIPTION | 43 spFSR-2.0.1/spFSR/MD5 | 42 spFSR-2.0.1/spFSR/NAMESPACE | 35 spFSR-2.0.1/spFSR/R/getBestModel.R | 42 spFSR-2.0.1/spFSR/R/getImportance.R | 44 - spFSR-2.0.1/spFSR/R/plot.spFSR.R | 120 +- spFSR-2.0.1/spFSR/R/plotImportance.R | 80 - spFSR-2.0.1/spFSR/R/print.summary.spFSR.R | 2 spFSR-2.0.1/spFSR/R/spFSR.default.R | 308 ++++--- spFSR-2.0.1/spFSR/R/spFeatureSelection.R | 225 ++--- spFSR-2.0.1/spFSR/R/spsaKernel.R | 1211 +++++++++++++++++----------- spFSR-2.0.1/spFSR/R/summary.spFSR.R | 67 - spFSR-2.0.1/spFSR/build/partial.rdb |only spFSR-2.0.1/spFSR/man/getBestModel.Rd | 14 spFSR-2.0.1/spFSR/man/getImportance.Rd | 8 spFSR-2.0.1/spFSR/man/plot.spFSR.Rd | 19 spFSR-2.0.1/spFSR/man/plotImportance.Rd | 10 spFSR-2.0.1/spFSR/man/spFSR.default.Rd | 142 ++- spFSR-2.0.1/spFSR/man/spFeatureSelection.Rd | 207 ++-- spFSR-2.0.1/spFSR/man/summary.spFSR.Rd | 9 23 files changed, 1506 insertions(+), 1122 deletions(-)
Title: Get the Timezone Information
Description: A function to retrieve the system timezone on Unix systems
which has been found to find an answer when 'Sys.timezone()' has failed.
It is based on an answer by Duane McCully posted on 'StackOverflow', and
adapted to be callable from R. The package also builds on Windows, but
just returns NULL.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between gettz versions 0.0.4 dated 2020-04-14 and 0.0.5 dated 2022-10-29
ChangeLog | 32 +++++++++++++++++++++++++++++++- DESCRIPTION | 11 ++++++----- MD5 | 13 +++++++------ README.md | 10 +++++----- build/partial.rdb |binary cleanup |only man/gettz-package.Rd | 2 +- src/init.c | 2 +- 8 files changed, 51 insertions(+), 19 deletions(-)