Title: Metabolomics Data Analysis Functions
Description: A collection of functions for processing and analyzing metabolite data.
The namesake function mrbin() converts 1D
or 2D Nuclear Magnetic Resonance data into a matrix of values suitable for further data analysis and
performs basic processing steps in a reproducible way. Negative values, a
common issue in such data, can be replaced by positive values (<doi:10.1021/acs.jproteome.0c00684>). All used
parameters are stored in a readable text file and can be restored from that
file to enable exact reproduction of the data at a later time. The function fia() ranks features according
to their impact on classifier models, especially artificial neural network models.
Author: Matthias Klein [aut, cre]
Maintainer: Matthias Klein <matthias.s.klein@gmx.net>
Diff between mrbin versions 1.6.5 dated 2022-06-22 and 1.7.0 dated 2022-10-30
DESCRIPTION | 16 MD5 | 74 NAMESPACE | 10 NEWS.md | 15 R/mrbin.R | 5946 ++++++++++++++++++++++++++------------------ README.md | 179 - inst/doc/mrbin.R | 389 ++ inst/doc/mrbin.Rnw | 649 +++- inst/doc/mrbin.pdf |binary man/PQNScaling.Rd | 20 man/annotatemrbin.Rd |only man/atnv.Rd | 17 man/checkmrbin.Rd |only man/contMin.Rd | 2 man/createmrbin.Rd |only man/cropNMR.Rd | 7 man/down.Rd | 2 man/editmetabolitesmrbin.Rd |only man/editmrbin.Rd |only man/intMin.Rd | 2 man/intPlus.Rd | 2 man/left.Rd | 2 man/logTrafo.Rd | 19 man/metadatamrbin.Rd |only man/mrbin.Rd | 20 man/mrbinrun.Rd | 19 man/plotMultiNMR.Rd | 13 man/plotNMR.Rd | 10 man/plotPCA.Rd |only man/plotResults.Rd | 20 man/printParameters.Rd | 2 man/recreatemrbin.Rd | 3 man/removeNoise.Rd | 17 man/right.Rd | 2 man/setNoiseLevels.Rd |only man/setParam.Rd | 4 man/timeStampMrbin.Rd |only man/trimZeros.Rd |only man/up.Rd | 2 man/zoom.Rd | 2 man/zoomIn.Rd | 2 man/zoomOut.Rd | 2 vignettes/mrbin.Rnw | 649 +++- 43 files changed, 5101 insertions(+), 3017 deletions(-)
Title: 'Rcpp' Integration for 'GNU GSL' Vectors and Matrices
Description: 'Rcpp' integration for 'GNU GSL' vectors and matrices
The 'GNU Scientific Library' (or 'GSL') is a collection of numerical routines for
scientific computing. It is particularly useful for C and C++ programs as it
provides a standard C interface to a wide range of mathematical routines. There
are over 1000 functions in total with an extensive test suite. The 'RcppGSL'
package provides an easy-to-use interface between 'GSL' data structures and
R using concepts from 'Rcpp' which is itself a package that eases the
interfaces between R and C++. This package also serves as a prime example of
how to build a package that uses 'Rcpp' to connect to another third-party
library. The 'autoconf' script, 'inline' plugin and example package can all
be used as a stanza to write a similar package against another library.
Author: Dirk Eddelbuettel and Romain Francois
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppGSL versions 0.3.11 dated 2022-03-12 and 0.3.12 dated 2022-10-30
ChangeLog | 10 DESCRIPTION | 8 MD5 | 18 build/partial.rdb |binary build/vignette.rds |binary configure | 1734 +++++++++++++++++++++++++++++---------------- configure.ac | 2 inst/NEWS.Rd | 7 inst/doc/RcppGSL-intro.pdf |binary src/init.c | 4 10 files changed, 1179 insertions(+), 604 deletions(-)
Title: 'Rcpp' Bindings for the Boost Date_Time Library
Description: Access to Boost Date_Time functionality for dates,
durations (both for days and date time objects), time zones, and
posix time ('ptime') is provided by using 'Rcpp modules'. The
posix time implementation can support high-resolution of up to
nano-second precision by using 96 bits (instead of R's 64)
to present a 'ptime' object (but this needs recompilation with
a #define set).
Author: Dirk Eddelbuettel and Romain Francois
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppBDT versions 0.2.5 dated 2022-03-29 and 0.2.6 dated 2022-10-30
ChangeLog | 6 ++++++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/NEWS.Rd | 7 +++++++ src/init.c | 10 +++++----- 5 files changed, 26 insertions(+), 13 deletions(-)
Title: Draw Geographical Maps
Description: Display of maps. Projection code and larger maps are in
separate packages ('mapproj' and 'mapdata').
Author: Original S code by Richard A. Becker and Allan R. Wilks.
R version by Ray Brownrigg.
Enhancements by Thomas P Minka and Alex Deckmyn.
Maintainer: Alex Deckmyn <alex.deckmyn@meteo.be>
Diff between maps versions 3.4.0 dated 2021-09-25 and 3.4.1 dated 2022-10-30
maps-3.4.0/maps/R/read.sp.R |only maps-3.4.1/maps/DESCRIPTION | 8 ++--- maps-3.4.1/maps/MD5 | 38 +++++++++++++------------- maps-3.4.1/maps/R/read_external.R |only maps-3.4.1/maps/data/world.cities.rda |binary maps-3.4.1/maps/man/county.Rd | 4 +- maps-3.4.1/maps/man/france.Rd | 4 +- maps-3.4.1/maps/man/italy.Rd | 4 +- maps-3.4.1/maps/man/match.map.Rd | 2 - maps-3.4.1/maps/man/nz.Rd | 4 +- maps-3.4.1/maps/man/state.Rd | 4 +- maps-3.4.1/maps/man/state.carto.Rd | 4 +- maps-3.4.1/maps/man/state.vbm.Rd | 4 +- maps-3.4.1/maps/man/usa.Rd | 4 +- maps-3.4.1/maps/man/world.Rd | 4 +- maps-3.4.1/maps/man/world2.Rd | 4 +- maps-3.4.1/maps/src/Gmake.c | 49 ++++++++++------------------------ maps-3.4.1/maps/src/Lmake.c | 44 ++++++++---------------------- maps-3.4.1/maps/src/county.name | 2 - maps-3.4.1/maps/src/mapget.c | 30 ++++++-------------- maps-3.4.1/maps/src/thin.c | 17 ++--------- 21 files changed, 85 insertions(+), 145 deletions(-)
Title: Map Projections
Description: Converts latitude/longitude into projected coordinates.
Author: Doug McIlroy. Packaged for R by Ray Brownrigg and Thomas P
Minka, transition to Plan 9 codebase by Roger Bivand.
Maintainer: Alex Deckmyn <alex.deckmyn@meteo.be>
Diff between mapproj versions 1.2.8 dated 2022-01-12 and 1.2.9 dated 2022-10-30
DESCRIPTION | 8 ++--- MD5 | 72 ++++++++++++++++++++++++++--------------------------- man/mapproject.Rd | 6 ++-- src/aitoff.c | 2 - src/albers.c | 4 +- src/azequalarea.c | 2 - src/azequidist.c | 2 - src/bicentric.c | 2 - src/bonne.c | 2 - src/conic.c | 2 - src/cylequalarea.c | 2 - src/cylindrical.c | 2 - src/eisenlohr.c | 2 - src/elliptic.c | 2 - src/fisheye.c | 2 - src/gall.c | 2 - src/gilbert.c | 2 - src/guyou.c | 6 ++-- src/hex.c | 2 - src/homing.c | 4 +- src/lagrange.c | 2 - src/lambert.c | 4 +- src/laue.c | 2 - src/map.h | 68 +++++++++++++++++++++++++------------------------- src/mapproject.c | 22 +++++----------- src/mercator.c | 4 +- src/mollweide.c | 2 - src/newyorker.c | 2 - src/orthographic.c | 2 - src/perspective.c | 6 ++-- src/polyconic.c | 2 - src/rectangular.c | 2 - src/simpleconic.c | 2 - src/sinusoidal.c | 2 - src/tetra.c | 2 - src/trapezoidal.c | 2 - src/twocirc.c | 4 +- 37 files changed, 126 insertions(+), 132 deletions(-)
Title: Analysis of Factorial Experiments
Description: Convenience functions for analyzing factorial experiments using ANOVA or
mixed models. aov_ez(), aov_car(), and aov_4() allow specification of
between, within (i.e., repeated-measures), or mixed (i.e., split-plot)
ANOVAs for data in long format (i.e., one observation per row),
automatically aggregating multiple observations per individual and cell
of the design. mixed() fits mixed models using lme4::lmer() and computes
p-values for all fixed effects using either Kenward-Roger or Satterthwaite
approximation for degrees of freedom (LMM only), parametric bootstrap
(LMMs and GLMMs), or likelihood ratio tests (LMMs and GLMMs).
afex_plot() provides a high-level interface for interaction or one-way
plots using ggplot2, combining raw data and model estimates. afex uses
type 3 sums of squares as default (imitating commercial statistical software).
Author: Henrik Singmann [aut, cre] ,
Ben Bolker [aut],
Jake Westfall [aut],
Frederik Aust [aut] ,
Mattan S. Ben-Shachar [aut],
Soeren Hoejsgaard [ctb],
John Fox [ctb],
Michael A. Lawrence [ctb],
Ulf Mertens [ctb],
Jonathon Love [ctb],
Russell Lenth [ctb],
Rune [...truncated...]
Maintainer: Henrik Singmann <singmann@gmail.com>
Diff between afex versions 1.1-1 dated 2022-04-29 and 1.2-0 dated 2022-10-30
DESCRIPTION | 8 MD5 | 47 NEWS | 1043 ----------------- R/afex_plot.R | 38 R/afex_plot_plotting_functions.R | 178 ++ R/afex_plot_utils.R | 6 R/mixed.R | 2 build/partial.rdb |binary inst/doc/afex_analysing_accuracy_data.html | 65 - inst/doc/afex_anova_example.html | 96 - inst/doc/afex_mixed_example.R | 19 inst/doc/afex_mixed_example.Rmd | 11 inst/doc/afex_mixed_example.html | 74 - inst/doc/afex_plot_introduction.R | 102 - inst/doc/afex_plot_introduction.Rmd | 95 - inst/doc/afex_plot_introduction.html | 418 +++--- inst/doc/afex_plot_supported_models.html | 48 inst/doc/assumptions_of_ANOVAs.html | 85 - inst/extdata/output_afex_plot_mixed_vignette.rda |binary inst/extdata/output_afex_plot_mixed_vignette_model.rda |only man/afex_plot.Rd | 99 + man/aov_car.Rd | 6 tests/testthat/test-afex_plot-bugs.R | 18 vignettes/afex_mixed_example.Rmd | 11 vignettes/afex_plot_introduction.Rmd | 95 - 25 files changed, 935 insertions(+), 1629 deletions(-)
Title: Análisis Computacional de Eventos de Protesta
Description: La librería 'ACEP' contiene funciones específicas para
desarrollar análisis computacional de eventos de protesta. Asimismo,
contiene base de datos con colecciones de notas sobre protestas y
diccionarios de palabras conflictivas. Colección de diccionarios que
reúne diccionarios de diferentes orígenes. The 'ACEP' library
contains specific functions to perform computational analysis of
protest events. It also contains a database with collections of notes
on protests and dictionaries of conflicting words. Collection of
dictionaries that brings together dictionaries from different sources.
Author: Agustin Nieto [aut, cre]
Maintainer: Agustin Nieto <agustin.nieto77@gmail.com>
Diff between ACEP versions 0.0.1 dated 2022-07-18 and 0.0.2 dated 2022-10-30
ACEP-0.0.1/ACEP/man/figures/logo.png |only ACEP-0.0.2/ACEP/DESCRIPTION | 35 ++- ACEP-0.0.2/ACEP/MD5 | 92 +++++--- ACEP-0.0.2/ACEP/NAMESPACE | 5 ACEP-0.0.2/ACEP/NEWS.md | 4 ACEP-0.0.2/ACEP/R/acep_bases.R | 32 ++- ACEP-0.0.2/ACEP/R/acep_clean.R |only ACEP-0.0.2/ACEP/R/acep_db.R | 14 - ACEP-0.0.2/ACEP/R/acep_detect.R |only ACEP-0.0.2/ACEP/R/acep_diccionarios.R | 29 ++ ACEP-0.0.2/ACEP/R/acep_frec.R | 14 - ACEP-0.0.2/ACEP/R/acep_int.R | 23 +- ACEP-0.0.2/ACEP/R/acep_load_base.R | 21 +- ACEP-0.0.2/ACEP/R/acep_men.R | 26 +- ACEP-0.0.2/ACEP/R/acep_plot_rst.R | 34 ++- ACEP-0.0.2/ACEP/R/acep_plot_st.R | 53 ++--- ACEP-0.0.2/ACEP/R/acep_rs.R |only ACEP-0.0.2/ACEP/R/acep_rst.R | 81 +++++-- ACEP-0.0.2/ACEP/R/acep_token.R |only ACEP-0.0.2/ACEP/R/acep_token_plot.R |only ACEP-0.0.2/ACEP/R/acep_token_table.R |only ACEP-0.0.2/ACEP/README.md | 176 +++++++++-------- ACEP-0.0.2/ACEP/data/acep_bases.RData |binary ACEP-0.0.2/ACEP/data/acep_rs.RData |only ACEP-0.0.2/ACEP/man/acep_bases.Rd | 92 +++++--- ACEP-0.0.2/ACEP/man/acep_clean.Rd |only ACEP-0.0.2/ACEP/man/acep_db.Rd | 64 +++--- ACEP-0.0.2/ACEP/man/acep_detect.Rd |only ACEP-0.0.2/ACEP/man/acep_diccionarios.Rd | 91 +++++--- ACEP-0.0.2/ACEP/man/acep_frec.Rd | 49 ++-- ACEP-0.0.2/ACEP/man/acep_int.Rd | 67 +++--- ACEP-0.0.2/ACEP/man/acep_load_base.Rd | 51 ++-- ACEP-0.0.2/ACEP/man/acep_men.Rd | 61 +++-- ACEP-0.0.2/ACEP/man/acep_plot_rst.Rd | 61 +++-- ACEP-0.0.2/ACEP/man/acep_plot_st.Rd | 85 ++++---- ACEP-0.0.2/ACEP/man/acep_rs.Rd |only ACEP-0.0.2/ACEP/man/acep_rst.Rd | 96 +++++---- ACEP-0.0.2/ACEP/man/acep_token.Rd |only ACEP-0.0.2/ACEP/man/acep_token_plot.Rd |only ACEP-0.0.2/ACEP/man/acep_token_table.Rd |only ACEP-0.0.2/ACEP/man/figures/README-ejemplo3-1.png |binary ACEP-0.0.2/ACEP/man/figures/README-ejemplo3-2.png |binary ACEP-0.0.2/ACEP/man/figures/logo.svg |only ACEP-0.0.2/ACEP/tests/testthat.R | 8 ACEP-0.0.2/ACEP/tests/testthat/test-acep_clean.R |only ACEP-0.0.2/ACEP/tests/testthat/test-acep_db.R | 6 ACEP-0.0.2/ACEP/tests/testthat/test-acep_detect.R |only ACEP-0.0.2/ACEP/tests/testthat/test-acep_frec.R | 3 ACEP-0.0.2/ACEP/tests/testthat/test-acep_int.R | 7 ACEP-0.0.2/ACEP/tests/testthat/test-acep_load_base.R | 7 ACEP-0.0.2/ACEP/tests/testthat/test-acep_men.R | 9 ACEP-0.0.2/ACEP/tests/testthat/test-acep_plot_rst.R | 10 ACEP-0.0.2/ACEP/tests/testthat/test-acep_plot_st.R | 22 +- ACEP-0.0.2/ACEP/tests/testthat/test-acep_rst.R | 19 + ACEP-0.0.2/ACEP/tests/testthat/test-acep_token.R |only ACEP-0.0.2/ACEP/tests/testthat/test-acep_token_plot.R |only ACEP-0.0.2/ACEP/tests/testthat/test-acep_token_table.R |only 57 files changed, 857 insertions(+), 590 deletions(-)
Title: Various Programming Utilities
Description: Utility functions useful when programming and developing R packages.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.utils versions 2.12.0 dated 2022-06-27 and 2.12.1 dated 2022-10-30
DESCRIPTION | 6 +-- MD5 | 28 +++++++------- NEWS.md | 26 +++++++++++++ R/Arguments.R | 2 - R/System.R | 4 +- R/filePath.R | 15 ++++++- R/readWindowsShortcut.R | 2 - R/useRepos.R | 16 +++++++- R/withTimeout.R | 32 ++++++++++++++++ man/findGhostscript.System.Rd | 4 +- man/getFilename.Arguments.Rd | 2 - man/readWindowsShortcut.Rd | 2 - man/withTimeout.Rd | 30 +++++++++++++++ tests/filePath.R | 5 ++ tests/withTimeout.R | 80 +++++++++++++++++++++++++++++++++--------- 15 files changed, 206 insertions(+), 48 deletions(-)
Title: Creates a Model Matrix via Feature Hashing with a Formula
Interface
Description: Feature hashing, also called as the hashing trick, is a method to transform
features of a instance to a vector. Thus, it is a method to transform a real dataset to a matrix.
Without looking up the indices in an associative array,
it applies a hash function to the features and uses their hash values as indices directly.
The method of feature hashing in this package was proposed in Weinberger et al. (2009) <arXiv:0902.2206>.
The hashing algorithm is the murmurhash3 from the 'digest' package.
Please see the README in <https://github.com/wush978/FeatureHashing> for more information.
Author: Wush Wu [aut, cre],
Michael Benesty [aut, ctb]
Maintainer: Wush Wu <wush978@gmail.com>
Diff between FeatureHashing versions 0.9.1.4 dated 2019-11-24 and 0.9.1.5 dated 2022-10-30
DESCRIPTION | 9 MD5 | 32 +- R/hashed.model.matrix.R | 6 README.md | 4 build/vignette.rds |binary inst/doc/FeatureHashing.html | 590 ++++++++++++++++++++++++++++++---------- inst/doc/SentimentAnalysis.html | 489 +++++++++++++++++++++++++++------ man/CSCMatrix-class.Rd | 12 man/hash.mapping.Rd | 6 man/hash.size.Rd | 12 man/hashed.model.matrix.Rd | 95 +++--- man/intToRaw.Rd | 3 man/ipinyou.Rd | 21 - man/simulate.split.Rd | 11 man/test.tag.Rd | 13 src/RcppExports.cpp | 5 src/vector_converter.h | 4 17 files changed, 976 insertions(+), 336 deletions(-)
More information about FeatureHashing at CRAN
Permanent link
Title: Computation of Optimal Transport Plans and Wasserstein Distances
Description: Solve optimal transport problems. Compute Wasserstein distances (a.k.a. Kantorovitch, Fortet--Mourier, Mallows, Earth Mover's, or minimal L_p distances), return the corresponding transference plans, and display them graphically. Objects that can be compared include grey-scale images, (weighted) point patterns, and mass vectors.
Author: Dominic Schuhmacher [aut, cre],
Bjoern Baehre [aut] ,
Nicolas Bonneel [aut] ,
Carsten Gottschlich [aut] ,
Valentin Hartmann [aut] ,
Florian Heinemann [aut] ,
Bernhard Schmitzer [aut] ,
Joern Schrieber [aut] ,
Timo Wilm [ctb]
Maintainer: Dominic Schuhmacher <dominic.schuhmacher@mathematik.uni-goettingen.de>
Diff between transport versions 0.12-4 dated 2022-08-12 and 0.13-0 dated 2022-10-30
DESCRIPTION | 11 ++- MD5 | 39 +++++++------ NAMESPACE | 9 ++- NEWS | 36 ++++++++++++ R/fundament.R | 19 +++--- R/lilhelpers.R | 131 +++++++++++++++++++++++++++++++++++++++------ R/shielding.R | 6 +- R/unbalanced.R |only man/matimage.Rd |only man/plot.Rd | 6 +- man/plot.ubtrans.Rd |only man/plot_apollonius.Rd | 14 +++- man/semidiscrete1.Rd | 11 +++ man/shielding.Rd | 14 +++- man/subwasserstein.Rd | 17 ++++- man/transport.Rd | 4 + man/unbalanced.Rd |only src/aha.c | 2 src/revsimplex.c | 13 +--- src/shortsimplex.c | 15 +---- src/transport_init.c | 52 +++++++++++------ tests/testthat/_snaps |only tests/testthat/test-main.R | 112 ++++++++++++++++++++++++++++++++++++-- 23 files changed, 404 insertions(+), 107 deletions(-)
Title: Efficient Changing of Date-Times
Description: Efficient routines for manipulation of date-time objects while
accounting for time-zones and daylight saving times. The package includes
utilities for updating of date-time components (year, month, day etc.),
modification of time-zones, rounding of date-times, period addition and
subtraction etc. Parts of the 'CCTZ' source code, released under the Apache
2.0 License, are included in this package. See
<https://github.com/google/cctz> for more details.
Author: Vitalie Spinu [aut, cre],
Google Inc. [ctb, cph]
Maintainer: Vitalie Spinu <spinuvit@gmail.com>
Diff between timechange versions 0.0.2 dated 2020-10-05 and 0.1.0 dated 2022-10-30
timechange-0.0.2/timechange/R/time-zones.R |only timechange-0.1.0/timechange/DESCRIPTION | 9 timechange-0.1.0/timechange/MD5 | 68 +- timechange-0.1.0/timechange/NEWS.md | 9 timechange-0.1.0/timechange/R/RcppExports.R | 4 timechange-0.1.0/timechange/R/addition.R | 143 +++--- timechange-0.1.0/timechange/R/update.R | 71 +-- timechange-0.1.0/timechange/R/utils.R | 8 timechange-0.1.0/timechange/R/zones.R |only timechange-0.1.0/timechange/README.md | 2 timechange-0.1.0/timechange/man/time-zones.Rd | 22 timechange-0.1.0/timechange/man/time_add.Rd | 118 ++--- timechange-0.1.0/timechange/man/time_update.Rd | 58 ++ timechange-0.1.0/timechange/src/RcppExports.cpp | 28 - timechange-0.1.0/timechange/src/cctz/civil_time_detail.h | 36 - timechange-0.1.0/timechange/src/cctz/src/time_zone_fixed.cc | 2 timechange-0.1.0/timechange/src/cctz/src/time_zone_if.h | 3 timechange-0.1.0/timechange/src/cctz/src/time_zone_info.cc | 128 ++++- timechange-0.1.0/timechange/src/cctz/src/time_zone_libc.cc | 8 timechange-0.1.0/timechange/src/cctz/src/time_zone_lookup.cc | 54 ++ timechange-0.1.0/timechange/src/cctz/src/time_zone_lookup_test.cc | 63 ++ timechange-0.1.0/timechange/src/cctz/src/tzfile.h | 16 timechange-0.1.0/timechange/src/cctz/src/zone_info_source.cc | 5 timechange-0.1.0/timechange/src/cctz/time_zone.h | 113 +++- timechange-0.1.0/timechange/src/common.cpp | 63 +- timechange-0.1.0/timechange/src/common.h | 62 ++ timechange-0.1.0/timechange/src/get.cpp | 1 timechange-0.1.0/timechange/src/parse.c | 2 timechange-0.1.0/timechange/src/round.cpp | 60 +- timechange-0.1.0/timechange/src/update.cpp | 235 ++++++---- timechange-0.1.0/timechange/tests/testthat/test-addition.R | 98 ++-- timechange-0.1.0/timechange/tests/testthat/test-get.R | 1 timechange-0.1.0/timechange/tests/testthat/test-round.R | 40 - timechange-0.1.0/timechange/tests/testthat/test-time-zones.R | 113 ++++ timechange-0.1.0/timechange/tests/testthat/test-update.R | 202 +++++--- timechange-0.1.0/timechange/tests/testthat/utils.R | 3 36 files changed, 1268 insertions(+), 580 deletions(-)
Title: Statistical Tools for Topological Data Analysis
Description: Tools for the statistical analysis of persistent homology and for
density clustering. For that, this package provides an R interface for the
efficient algorithms of the C++ libraries 'GUDHI' <https://project.inria.fr/gudhi/software/>, 'Dionysus' <https://www.mrzv.org/software/dionysus/>, and 'PHAT' <https://bitbucket.org/phat-code/phat/>. This package also implements the methods in Fasy et al. (2014) <doi:10.1214/14-AOS1252> and Chazal et al. (2014) <doi:10.1145/2582112.2582128> for analyzing the statistical significance of persistent homology features.
Author: Brittany T. Fasy, Jisu Kim, Fabrizio Lecci, Clement Maria,
David L. Millman, Vincent Rouvreau.
Maintainer: Jisu Kim <jisu.kim@inria.fr>
Diff between TDA versions 1.8.7 dated 2022-03-29 and 1.8.8 dated 2022-10-30
DESCRIPTION | 8 +-- MD5 | 16 +++--- NEWS | 3 + R/RcppExports.R | 134 +++++++++++++++++++++++++-------------------------- build/vignette.rds |binary inst/doc/article.R | 1 inst/doc/article.pdf |binary man/TDA-package.Rd | 4 - src/CGAL/config.h | 10 +++ 9 files changed, 93 insertions(+), 83 deletions(-)
Title: Intensive Care Unit Data with R
Description: Focused on (but not exclusive to) data sets hosted on PhysioNet
(<https://physionet.org>), 'ricu' provides utilities for download, setup
and access of intensive care unit (ICU) data sets. In addition to
functions for running arbitrary queries against available data sets, a
system for defining clinical concepts and encoding their representations
in tabular ICU data is presented.
Author: Nicolas Bennett [aut, cre],
Drago Plecko [aut],
Ida-Fong Ukor [aut]
Maintainer: Nicolas Bennett <r@nbenn.ch>
Diff between ricu versions 0.5.3 dated 2022-07-12 and 0.5.4 dated 2022-10-30
DESCRIPTION | 8 +- MD5 | 38 +++++----- NEWS.md | 4 + R/callback-sep3.R | 110 +++++++++++++++++++++--------- R/ricu.R | 2 inst/doc/jss.pdf |binary inst/doc/ricu.html | 124 ++++++++++++++++++---------------- inst/doc/uom.html | 126 ++++++++++++++++++----------------- man/change_id.Rd | 34 ++++----- man/data_env.Rd | 98 ++++++++++++--------------- man/figures/sofa-sep-3-1.pdf |binary man/figures/sofa-sep-3-1.png |binary man/label_sep3.Rd | 35 --------- tests/testthat/test-callback.R | 4 + tests/testthat/test-concept.R | 2 tests/testthat/test-data-utils.R | 2 tests/testthat/test-setup-attach.R | 2 tests/testthat/test-setup-download.R | 23 +++++- tests/testthat/test-setup-import.R | 2 tests/testthat/test-utils-cli.R | 2 20 files changed, 334 insertions(+), 282 deletions(-)
Title: R API Datetime
Description: Access to the C-level R date and datetime code is provided for
C-level API use by other packages via registration of native functions.
Client packages simply include a single header 'RApiDatetime.h' provided
by this package, and also 'import' it. The R Core group is the original
author of the code made available with slight modifications by this package.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RApiDatetime versions 0.0.6 dated 2021-08-14 and 0.0.7 dated 2022-10-30
ChangeLog | 12 ++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- README.md | 9 ++++----- inst/NEWS.Rd | 10 +++++++++- src/Rstrptime.h | 2 +- 6 files changed, 35 insertions(+), 16 deletions(-)
Title: a Non-Parametric Statistical Significance Test for Rolling
Window Correlation
Description: Estimates and plots (as a single plot and as a heat map) the rolling window correlation coefficients between two time series and computes their statistical significance, which is carried out through a non-parametric computing-intensive method. This method addresses the effects due to the multiple testing (inflation of the Type I error) when the statistical significance is estimated for the rolling window correlation coefficients. The method is based on Monte Carlo simulations by permuting one of the variables (e.g., the dependent) under analysis and keeping fixed the other variable (e.g., the independent). We improve the computational efficiency of this method to reduce the computation time through parallel computing. The 'NonParRolCor' package also provides examples with synthetic and real-life environmental time series to exemplify its use. Methods derived from R. Telford (2013) <https://quantpalaeo.wordpress.com/2013/01/04/> and J.M. Polanco-Martinez and J.L. Lopez-Martinez (2 [...truncated...]
Author: Josue M. Polanco-Martinez [aut, cph, cre]
,
Jose L. Lopez-Martinez [ctb]
Maintainer: Josue M. Polanco-Martinez <josue.m.polanco@gmail.com>
Diff between NonParRolCor versions 0.6.0 dated 2021-04-07 and 0.8.0 dated 2022-10-30
NonParRolCor-0.6.0/NonParRolCor/R/estimation_NonParRolCor.R |only NonParRolCor-0.6.0/NonParRolCor/R/heatmap_NonParRolCor.R |only NonParRolCor-0.6.0/NonParRolCor/man/estimation_NonParRolCor.Rd |only NonParRolCor-0.6.0/NonParRolCor/man/heatmap_NonParRolCor.Rd |only NonParRolCor-0.8.0/NonParRolCor/DESCRIPTION | 10 - NonParRolCor-0.8.0/NonParRolCor/MD5 | 24 +-- NonParRolCor-0.8.0/NonParRolCor/R/estimation_1win.R |only NonParRolCor-0.8.0/NonParRolCor/R/estimation_heatmap.R |only NonParRolCor-0.8.0/NonParRolCor/R/plot_estimation_1win.R |only NonParRolCor-0.8.0/NonParRolCor/R/plot_estimation_heatmap.R |only NonParRolCor-0.8.0/NonParRolCor/build/partial.rdb |binary NonParRolCor-0.8.0/NonParRolCor/data/ecodata2.rda |only NonParRolCor-0.8.0/NonParRolCor/man/NonParRolCor-package.Rd | 80 +++++----- NonParRolCor-0.8.0/NonParRolCor/man/ecodata.Rd | 2 NonParRolCor-0.8.0/NonParRolCor/man/ecodata2.Rd |only NonParRolCor-0.8.0/NonParRolCor/man/estimation_1win.Rd |only NonParRolCor-0.8.0/NonParRolCor/man/estimation_heatmap.Rd |only NonParRolCor-0.8.0/NonParRolCor/man/plot_estimation_1win.Rd |only NonParRolCor-0.8.0/NonParRolCor/man/plot_estimation_heatmap.Rd |only NonParRolCor-0.8.0/NonParRolCor/man/syntheticdata.Rd | 4 20 files changed, 66 insertions(+), 54 deletions(-)
Title: Model Evaluation and Analysis
Description: Analyses species distribution models and evaluates their performance. It includes functions for performing variation partitioning, calculating several measures of model discrimination and calibration, optimizing prediction thresholds based on a number of criteria, performing multivariate environmental similarity surface (MESS) analysis, and displaying various analytical plots. Initially described in Barbosa et al. (2013) <doi:10.1111/ddi.12100>.
Author: Barbosa A.M., Brown J.A., Jimenez-Valverde A., Real R.
Maintainer: A. Marcia Barbosa <ana.marcia.barbosa@gmail.com>
Diff between modEvA versions 3.5 dated 2022-06-01 and 3.8.4 dated 2022-10-30
DESCRIPTION | 15 ++--- MD5 | 45 +++++++++------- NAMESPACE | 6 +- NEWS | 103 ++++++++++++++++++++++++++++++++++++++ R/MillerCalib.R | 12 ++-- R/applyThreshold.R | 45 +++++++++++----- R/confusionLabel.R | 8 ++- R/confusionMatrix.R |only R/getThreshold.R | 24 ++++----- R/optiThresh.R | 63 ++++++++++++----------- R/predPlot.R | 62 +++++++++++++---------- R/pseudoRsq.R |only R/threshMeasures.R | 24 +++++---- R/varPart.R | 130 ++++++++++++++++++++++++++++++++++++++----------- data/rotif.mods.rda |binary man/Boyce.Rd | 8 +-- man/MillerCalib.Rd | 27 ++++++++-- man/applyThreshold.Rd | 16 +++--- man/confusionLabel.Rd | 9 ++- man/confusionMatrix.Rd |only man/evaluate.Rd | 4 - man/modEvA-package.Rd | 8 +-- man/predPlot.Rd | 14 ++--- man/threshMeasures.Rd | 13 +--- man/varPart.Rd | 84 ++++++++++++++++++++----------- 25 files changed, 490 insertions(+), 230 deletions(-)
Title: Fuzzy Similarity in Species Distributions
Description: Functions to compute fuzzy versions of species occurrence patterns based on presence-absence data (including inverse distance interpolation, trend surface analysis, and prevalence-independent favourability obtained from probability of presence), as well as pair-wise fuzzy similarity (based on fuzzy logic versions of commonly used similarity indices) among those occurrence patterns. Includes also functions for model consensus and comparison (overlap and fuzzy similarity, loss or gain), and for data preparation, such as obtaining unique abbreviations of species names, gridding (thinning) point occurrence data onto raster maps, converting species lists (long format) to presence-absence tables (wide format), transposing part of a data frame, selecting relevant variables for models, assessing the false discovery rate, or analysing and dealing with multicollinearity. Initially described in Barbosa (2015) <doi:10.1111/2041-210X.12372>.
Author: Barbosa A.M.
Maintainer: A. Marcia Barbosa <ana.marcia.barbosa@gmail.com>
Diff between fuzzySim versions 4.3 dated 2022-06-01 and 4.9.2 dated 2022-10-30
DESCRIPTION | 15 +--- MD5 | 74 +++++++++++---------- NAMESPACE | 6 - NEWS | 166 ++++++++++++++++++++++++++++++++++++++++++++++++ R/FDR.R | 34 ++++++++- R/corSelect.R | 60 ++++++++++------- R/distPres.R | 2 R/entropy.R | 2 R/fuzzyConsensus.R | 8 +- R/fuzzyOverlay.R | 2 R/fuzzyRangeChange.R | 15 ++-- R/gridRecords.R | 32 +++++---- R/integerCols.R | 2 R/modelTrim.R | 71 ++++++++++---------- R/multConvert.R | 2 R/multGLM.R | 123 +++++++++++++++++++++-------------- R/multTSA.R | 2 R/multicol.R | 2 R/rarity.R | 2 R/simMat.R | 2 R/splist2presabs.R | 5 - R/stepByStep.R | 30 +++++--- R/stepwise.R |only R/summaryWald.R |only R/transpose.R | 2 R/vulnerability.R | 2 data/rotif.env.rda |binary data/rotifers.rda |binary man/FDR.Rd | 5 - man/corSelect.Rd | 4 - man/fuzSim.Rd | 10 ++ man/fuzzyConsensus.Rd | 4 - man/fuzzyRangeChange.Rd | 26 ++++--- man/fuzzySim-package.Rd | 4 - man/gridRecords.Rd | 28 ++++++-- man/modelTrim.Rd | 8 +- man/multGLM.Rd | 74 +++++++++++++-------- man/stepByStep.Rd | 22 +++--- man/stepwise.Rd |only man/summaryWald.Rd |only 40 files changed, 572 insertions(+), 274 deletions(-)
Title: Disciplined Convex Optimization
Description: An object-oriented modeling language for disciplined
convex programming (DCP) as described in Fu, Narasimhan, and Boyd
(2020, <doi:10.18637/jss.v094.i14>). It allows the user to
formulate convex optimization problems in a natural way following
mathematical convention and DCP rules. The system analyzes the
problem, verifies its convexity, converts it into a canonical
form, and hands it off to an appropriate solver to obtain the
solution. Interfaces to solvers on CRAN and elsewhere are
provided, both commercial and open source.
Author: Anqi Fu [aut, cre],
Balasubramanian Narasimhan [aut],
David W Kang [aut],
Steven Diamond [aut],
John Miller [aut],
Stephen Boyd [ctb],
Paul Kunsberg Rosenfield [ctb]
Maintainer: Anqi Fu <anqif@alumni.stanford.edu>
Diff between CVXR versions 1.0-10 dated 2021-11-10 and 1.0-11 dated 2022-10-30
DESCRIPTION | 8 - MD5 | 266 ++++++++++++++++++++-------------------- NEWS.md | 11 - R/complex2real.R | 6 R/conic_solvers.R | 62 ++++----- R/dcp2cone.R | 4 R/dgp2dcp.R | 2 R/problem.R | 4 R/qp2quad_form.R | 8 - R/qp_solvers.R | 12 - R/reduction_solvers.R | 8 - R/reductions.R | 10 - R/transforms.R | 10 - README.md | 4 build/vignette.rds |binary inst/doc/cvxr_intro.html | 242 +++++++++++++++++++++--------------- inst/doc/version1.html | 142 ++++++++++----------- man/Abs-class.Rd | 18 +- man/AddExpression-class.Rd | 20 +-- man/AffAtom-class.Rd | 30 ++-- man/Atom-class.Rd | 44 +++--- man/AxisAtom-class.Rd | 12 - man/BinaryOperator-class.Rd | 12 - man/CBC_CONIC-class.Rd | 22 +-- man/CPLEX_CONIC-class.Rd | 18 +- man/CPLEX_QP-class.Rd | 14 +- man/CVXOPT-class.Rd | 18 +- man/Canonical-class.Rd | 18 +- man/Canonicalization-class.Rd | 14 +- man/Chain-class.Rd | 8 - man/Complex2Real-class.Rd | 8 - man/ConeMatrixStuffing-class.Rd | 10 + man/ConicSolver-class.Rd | 10 - man/Conjugate-class.Rd | 14 +- man/Constant-class.Rd | 32 ++-- man/ConstantSolver-class.Rd | 20 +-- man/Constraint-class.Rd | 30 ++-- man/Conv-class.Rd | 16 +- man/CumMax-class.Rd | 22 +-- man/CumSum-class.Rd | 12 - man/CvxAttr2Constr-class.Rd | 6 man/Dcp2Cone-class.Rd | 6 man/Dgp2Dcp-class.Rd | 10 - man/DgpCanonMethods-class.Rd | 4 man/DiagMat-class.Rd | 12 - man/DiagVec-class.Rd | 16 +- man/DivExpression-class.Rd | 24 +-- man/ECOS-class.Rd | 14 +- man/ECOS_BB-class.Rd | 10 - man/Elementwise-class.Rd | 8 - man/EliminatePwl-class.Rd | 4 man/Entr-class.Rd | 18 +- man/EqConstraint-class.Rd | 16 +- man/EvalParams-class.Rd | 6 man/Exp-class.Rd | 20 +-- man/ExpCone-class.Rd | 16 +- man/Expression-class.Rd | 78 +++++------ man/EyeMinusInv-class.Rd | 24 +-- man/FlipObjective-class.Rd | 6 man/GLPK-class.Rd | 14 +- man/GLPK_MI-class.Rd | 10 - man/GUROBI_CONIC-class.Rd | 18 +- man/GUROBI_QP-class.Rd | 14 +- man/GeoMean-class.Rd | 30 ++-- man/HStack-class.Rd | 14 +- man/Huber-class.Rd | 22 +-- man/Imag-class.Rd | 12 - man/Index-class.Rd | 18 +- man/IneqConstraint-class.Rd | 16 +- man/KLDiv-class.Rd | 18 +- man/Kron-class.Rd | 16 +- man/LambdaMax-class.Rd | 22 +-- man/LambdaSumLargest-class.Rd | 12 - man/Leaf-class.Rd | 58 ++++---- man/ListORConstr-class.Rd | 4 man/Log-class.Rd | 22 +-- man/Log1p-class.Rd | 10 - man/LogDet-class.Rd | 22 +-- man/LogSumExp-class.Rd | 18 +- man/Logistic-class.Rd | 16 +- man/MOSEK-class.Rd | 18 +- man/MatrixFrac-class.Rd | 28 ++-- man/MatrixStuffing-class.Rd | 10 + man/MaxElemwise-class.Rd | 22 +-- man/MaxEntries-class.Rd | 24 +-- man/Maximize-class.Rd | 8 - man/MinElemwise-class.Rd | 22 +-- man/MinEntries-class.Rd | 24 +-- man/Minimize-class.Rd | 8 - man/MulExpression-class.Rd | 22 +-- man/Multiply-class.Rd | 16 +- man/NegExpression-class.Rd | 16 +- man/NonPosConstraint-class.Rd | 12 - man/Norm1-class.Rd | 28 ++-- man/NormInf-class.Rd | 32 ++-- man/NormNuc-class.Rd | 20 +-- man/OSQP-class.Rd | 12 - man/Objective-class.Rd | 8 - man/OneMinusPos-class.Rd | 24 +-- man/PSDConstraint-class.Rd | 12 - man/PSDWrap-class.Rd | 4 man/Parameter-class.Rd | 16 +- man/PfEigenvalue-class.Rd | 24 +-- man/Pnorm-class.Rd | 34 ++--- man/Power-class.Rd | 34 ++--- man/Problem-class.Rd | 46 +++--- man/ProdEntries-class.Rd | 22 +-- man/Promote-class.Rd | 16 +- man/QpSolver-class.Rd | 6 man/QuadForm-class.Rd | 32 ++-- man/QuadOverLin-class.Rd | 32 ++-- man/Real-class.Rd | 12 - man/Reduction-class.Rd | 12 - man/ReductionSolver-class.Rd | 16 +- man/Reshape-class.Rd | 16 +- man/SCS-class.Rd | 18 +- man/SOC-class.Rd | 20 +-- man/SOCAxis-class.Rd | 10 - man/SigmaMax-class.Rd | 20 +-- man/SolvingChain-class.Rd | 8 - man/SpecialIndex-class.Rd | 12 - man/SumEntries-class.Rd | 10 - man/SumLargest-class.Rd | 22 +-- man/SymbolicQuadForm-class.Rd | 20 +-- man/Trace-class.Rd | 14 +- man/Transpose-class.Rd | 18 +- man/UnaryOperator-class.Rd | 6 man/UpperTri-class.Rd | 14 +- man/VStack-class.Rd | 14 +- man/Variable-class.Rd | 12 - man/Wrap-class.Rd | 12 - man/ZeroConstraint-class.Rd | 14 +- man/installed_solvers.Rd | 8 - src/RcppExports.cpp | 5 134 files changed, 1459 insertions(+), 1391 deletions(-)
Title: Broken Stick Model for Irregular Longitudinal Data
Description: Data on multiple individuals through time are often sampled at times that differ between persons. Irregular observation times can severely complicate the statistical analysis of the data. The broken stick model approximates each subject’s trajectory by one or more connected line segments. The times at which segments connect (breakpoints) are identical for all subjects and under control of the user. A well-fitting broken stick model effectively transforms individual measurements made at irregular times into regular trajectories with common observation times.
Specification of the model requires just three variables: time, measurement and subject. The model is a special case of the linear mixed model, with time as a linear B-spline and subject as the grouping factor. The main assumptions are: subjects are exchangeable, trajectories between consecutive breakpoints are straight, random effects follow a multivariate normal distribution, and unobserved data are missing at random.
The package [...truncated...]
Author: Stef van Buuren [aut, cre]
Maintainer: Stef van Buuren <stef.vanbuuren@tno.nl>
Diff between brokenstick versions 2.3.0 dated 2022-09-07 and 2.4.0 dated 2022-10-30
DESCRIPTION | 7 - MD5 | 68 ++++++------ NEWS.md | 21 +++ R/brokenstick-class.R | 7 + R/brokenstick.R | 11 + R/coef.R | 32 ++++- R/get.R | 170 ++++++++++++++++++------------ R/model.frame.R | 4 R/plot.R | 63 +++++++---- R/predict.R | 29 ++++- R/print.R |only R/summary.R | 95 +++++----------- README.md | 4 data/fit_200.rda |binary data/fit_200_light.rda |binary inst/doc/mainfunctions.R | 4 inst/doc/mainfunctions.Rmd | 6 - inst/doc/mainfunctions.html | 87 ++++++--------- inst/doc/oldfriends.R | 22 ++- inst/doc/oldfriends.Rmd | 42 ++++--- inst/doc/oldfriends.html | 79 +++++++------ inst/doc/perfectmodel.R | 8 + inst/doc/perfectmodel.Rmd | 9 + inst/doc/perfectmodel.html | 59 ++++------ man/brokenstick-class.Rd | 3 man/brokenstick.Rd | 5 man/coef.Rd |only man/get_knots.Rd | 19 +-- man/get_omega.Rd | 26 ++-- man/plot_trajectory.Rd | 8 - man/predict.Rd | 14 +- man/print.Rd |only man/summary.Rd |only tests/testthat/test-predict.brokenstick.R | 7 - vignettes/mainfunctions.Rmd | 6 - vignettes/oldfriends.Rmd | 42 ++++--- vignettes/perfectmodel.Rmd | 9 + 37 files changed, 557 insertions(+), 409 deletions(-)
Title: Calculate Federal and State Income Taxes in the United States
Description: Calculates federal and state income taxes in the United States. It acts as a wrapper
to the NBER's TAXSIM 35 (<http://taxsim.nber.org/taxsim35/>) tax simulator. TAXSIM 35 conducts
the calculations, while 'usincometaxes' prepares the data for TAXSIM 35, sends the data to
TAXSIM 35's server or communicates with the Web Assembly file, retrieves the data, and places it
into a data frame. All without the user worrying about this process.
Author: Shane Orr [aut, cre, cph],
Thomas Wells [ctb]
Maintainer: Shane Orr <shane.j.orr@gmail.com>
Diff between usincometaxes versions 0.5.3 dated 2022-10-08 and 0.5.4 dated 2022-10-30
DESCRIPTION | 6 MD5 | 14 NEWS.md | 7 R/calculate_taxes.R | 536 +++++++++++++++++----------------- R/utils_connect_server.R | 18 - inst/doc/send-data-to-taxsim.Rmd | 86 ++--- tests/testthat/test-calculate_taxes.R | 11 vignettes/send-data-to-taxsim.Rmd | 86 ++--- 8 files changed, 393 insertions(+), 371 deletions(-)
Title: A Zero Dependency 'SVG' Icon Library for 'Shiny'
Description: An implementation of the 'Heroicons' icon library for 'shiny'
applications and other 'R' web-based projects. You can search, render,
and customize icons without 'CSS' or 'JavaScript' dependencies.
Author: David Ruvolo [aut, cre] ,
Adam Wathan [ctb, cph] ,
Steve Schoger [ctb, cph]
Maintainer: David Ruvolo <dcruvolo@gmail.com>
Diff between rheroicons versions 0.4.0 dated 2022-07-16 and 1.0.0 dated 2022-10-30
rheroicons-0.4.0/rheroicons/inst/gallery-assets/public/rheroicons.min.css |only rheroicons-0.4.0/rheroicons/inst/gallery-assets/public/rheroicons.min.js |only rheroicons-0.4.0/rheroicons/inst/gallery-assets/src |only rheroicons-1.0.0/rheroicons/DESCRIPTION | 12 rheroicons-1.0.0/rheroicons/MD5 | 39 -- rheroicons-1.0.0/rheroicons/NEWS.md | 41 +- rheroicons-1.0.0/rheroicons/R/find_icon.R | 8 rheroicons-1.0.0/rheroicons/R/launch_gallery.R | 127 ++---- rheroicons-1.0.0/rheroicons/R/rheroicon.R | 45 +- rheroicons-1.0.0/rheroicons/R/sysdata.rda |binary rheroicons-1.0.0/rheroicons/R/utils.R | 9 rheroicons-1.0.0/rheroicons/README.md | 186 +++++----- rheroicons-1.0.0/rheroicons/inst/gallery-assets/public/index.html | 16 rheroicons-1.0.0/rheroicons/inst/gallery-assets/public/rheroicons.css |only rheroicons-1.0.0/rheroicons/inst/gallery-assets/public/rheroicons.js |only rheroicons-1.0.0/rheroicons/man/find_icons.Rd | 6 rheroicons-1.0.0/rheroicons/man/rheroicon.Rd | 19 - rheroicons-1.0.0/rheroicons/tests/testthat/test-find-icon.R | 12 rheroicons-1.0.0/rheroicons/tests/testthat/test-rheroicon.R | 78 +--- 19 files changed, 300 insertions(+), 298 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-08-05 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-22 0.5.4
2022-10-21 0.5.3
2022-01-28 0.5.2
2022-01-27 0.5.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-24 2.3.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-16 0.0.4
2022-08-09 0.0.3
2022-08-08 0.0.2
2022-07-01 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-02 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-14 0.2.0
2022-02-08 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-16 2.9
2022-04-09 2.8
2022-02-07 2.5
2021-09-08 2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-13 2.6.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-20 0.1.5
2021-03-04 0.1.4
2020-11-26 0.1.3
2020-06-18 0.1.2
2020-01-08 0.1.1
2019-12-16 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-19 0.2.6
2022-08-15 0.2.5
2022-07-19 0.2.4
2021-04-08 0.2.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-04 1.5.2
2022-01-20 1.5.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-17 1.2.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-13 22.8.1.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-14 1.0.1
2020-01-13 1.0.0
Title: Helper Functions for Bayesian Analyses
Description: Functions to 'numericise' 'R' objects (coerce to numeric
objects), summarise 'MCMC' (Monte Carlo Markov Chain) samples and
calculate deviance residuals as well as 'R' translations of some
'BUGS' (Bayesian Using Gibbs Sampling), 'JAGS' (Just Another Gibbs
Sampler), 'STAN' and 'TMB' (Template Model Builder) functions.
Author: Joe Thorley [aut, cre] ,
Kirill Mueller [ctb] ,
Nadine Hussein [ctb] ,
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between extras versions 0.4.0 dated 2022-09-23 and 0.5.0 dated 2022-10-30
DESCRIPTION | 14 - MD5 | 104 ++++---- NAMESPACE | 4 NEWS.md | 13 + R/dev.R | 156 ++++++------ R/internal.R |only R/log-lik.R | 94 ++++--- R/params.R | 2 R/ran.R | 117 +++++---- R/res.R | 113 +++++---- build/vignette.rds |only inst/WORDLIST | 2 inst/doc |only man/chk_index.Rd | 4 man/chk_indices.Rd | 4 man/chk_pars.Rd | 4 man/dev_gamma_pois.Rd | 2 man/dev_gamma_pois_zi.Rd |only man/dev_neg_binom.Rd | 2 man/fill_all.Rd | 10 man/fill_na.Rd | 10 man/log_lik_bern.Rd | 1 man/log_lik_binom.Rd | 1 man/log_lik_gamma_pois.Rd | 9 man/log_lik_gamma_pois_zi.Rd |only man/log_lik_lnorm.Rd | 1 man/log_lik_neg_binom.Rd | 5 man/log_lik_norm.Rd | 1 man/log_lik_pois.Rd | 1 man/log_lik_pois_zi.Rd | 1 man/numericise.Rd | 22 - man/params.Rd | 2 man/ran_bern.Rd | 3 man/ran_binom.Rd | 3 man/ran_gamma.Rd | 3 man/ran_gamma_pois.Rd | 7 man/ran_gamma_pois_zi.Rd |only man/ran_lnorm.Rd | 3 man/ran_neg_binom.Rd | 11 man/ran_norm.Rd | 3 man/ran_pois.Rd | 3 man/ran_pois_zi.Rd | 3 man/res_bern.Rd | 1 man/res_binom.Rd | 1 man/res_gamma_pois.Rd | 7 man/res_gamma_pois_zi.Rd |only man/res_lnorm.Rd | 1 man/res_neg_binom.Rd | 3 man/res_norm.Rd | 1 man/res_pois.Rd | 1 man/res_pois_zi.Rd | 5 tests/testthat/test-dev.R | 505 ++++++++++++++++++++++++++++++++---------- tests/testthat/test-log-lik.R | 72 +++++ tests/testthat/test-ran.R | 34 ++ tests/testthat/test-res.R | 99 +++++++- vignettes |only 56 files changed, 1020 insertions(+), 448 deletions(-)