Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-12-16 4.2.6
2019-07-10 4.1.6
2018-11-19 4.1.1
2018-07-25 4.0.0
2018-05-08 3.5.1
2018-04-19 3.1.9
2018-03-21 3.1.8
2018-01-18 3.1.4
2017-12-14 3.1.2
2017-11-13 3.1.1
2017-09-06 3.0.7
2017-08-01 3.0.6
2017-06-02 3.0.4
2017-04-18 2.2.0
2017-03-12 2.1.8
2017-02-01 2.1.2
2016-12-21 2.1.1
2016-10-31 2.0.4
2016-09-30 2.0.1
2016-08-27 2.0.0
2016-07-06 1.1.0
Title: Dive Analysis and Calibration
Description: Utilities to represent, visualize, filter, analyse, and summarize
time-depth recorder (TDR) data. Miscellaneous functions for
handling location data are also provided.
Author: Sebastian P. Luque <spluque@gmail.com>
Maintainer: Sebastian P. Luque <spluque@gmail.com>
Diff between diveMove versions 1.6.0 dated 2021-05-12 and 1.6.1 dated 2022-11-09
DESCRIPTION | 6 MD5 | 8 build/vignette.rds |binary inst/doc/diveMove.html | 950 ++++++++++++++++++++++++++++++++++-------------- man/labDive-internal.Rd | 8 5 files changed, 702 insertions(+), 270 deletions(-)
Title: Spatial and Spatiotemporal Relative Risk
Description: Provides functions to estimate kernel-smoothed spatial and spatio-temporal densities and relative risk functions, and perform subsequent inference. Methodological details can be found in the accompanying tutorial: Davies et al. (2018) <DOI:10.1002/sim.7577>.
Author: Tilman M. Davies [aut, cre],
Jonathan C. Marshall [aut]
Maintainer: Tilman M. Davies <tilman.davies@otago.ac.nz>
Diff between sparr versions 2.2-16 dated 2022-02-20 and 2.2-17 dated 2022-11-09
DESCRIPTION | 14 +++++++------- MD5 | 22 +++++++++++----------- NAMESPACE | 2 +- R/LIK.density.R | 2 +- R/LSCV.density.R | 8 ++++---- R/SLIK.adapt.R | 8 ++++---- R/bivariate.density.R | 6 +++--- R/package.R | 2 +- man/CV.Rd | 6 +++--- man/SLIK.adapt.Rd | 6 +++--- man/bivariate.density.Rd | 6 +++--- man/sparr-package.Rd | 4 ++-- 12 files changed, 43 insertions(+), 43 deletions(-)
Title: Data Visualization for IP Addresses and Networks
Description: A 'ggplot2' extension that enables visualization of IP
(Internet Protocol) addresses and networks. The address space is
mapped onto the Cartesian coordinate system using a space-filling
curve. Offers full support for both IPv4 and IPv6 (Internet Protocol
versions 4 and 6) address spaces.
Author: David Hall [aut, cre]
Maintainer: David Hall <david.hall.physics@gmail.com>
Diff between ggip versions 0.2.2 dated 2022-09-29 and 0.3.0 dated 2022-11-09
ggip-0.2.2/ggip/R/error.R |only ggip-0.2.2/ggip/tests/testthat/_snaps/error.md |only ggip-0.2.2/ggip/tests/testthat/test-error.R |only ggip-0.3.0/ggip/DESCRIPTION | 11 +- ggip-0.3.0/ggip/MD5 | 48 +++++----- ggip-0.3.0/ggip/NAMESPACE | 2 ggip-0.3.0/ggip/NEWS.md | 6 + ggip-0.3.0/ggip/R/geom-hilbert-outline.R | 36 +------ ggip-0.3.0/ggip/R/ip_to_cartesian.R | 48 ++++------ ggip-0.3.0/ggip/R/stat-summary-address.R | 25 +++-- ggip-0.3.0/ggip/R/utils.R |only ggip-0.3.0/ggip/build/vignette.rds |binary ggip-0.3.0/ggip/inst/doc/ggip.html | 15 ++- ggip-0.3.0/ggip/inst/doc/visualizing-ip-data.R | 2 ggip-0.3.0/ggip/inst/doc/visualizing-ip-data.Rmd | 10 +- ggip-0.3.0/ggip/inst/doc/visualizing-ip-data.html | 37 +++++-- ggip-0.3.0/ggip/man/geom_hilbert_outline.Rd | 10 +- ggip-0.3.0/ggip/man/stat_summary_address.Rd | 8 - ggip-0.3.0/ggip/src/address_to_pixel.cpp | 2 ggip-0.3.0/ggip/src/network_to_bbox.cpp | 2 ggip-0.3.0/ggip/tests/testthat/Rplots.pdf |binary ggip-0.3.0/ggip/tests/testthat/_snaps/geom-hilbert-outline.md |only ggip-0.3.0/ggip/tests/testthat/_snaps/ip_to_cartesian.md | 28 ++++- ggip-0.3.0/ggip/tests/testthat/_snaps/stat-summary-address.md |only ggip-0.3.0/ggip/tests/testthat/test-geom-hilbert-outline.R | 16 +-- ggip-0.3.0/ggip/tests/testthat/test-ip_to_cartesian.R | 20 +--- ggip-0.3.0/ggip/tests/testthat/test-stat-summary-address.R | 32 ++---- ggip-0.3.0/ggip/vignettes/visualizing-ip-data.Rmd | 10 +- 28 files changed, 188 insertions(+), 180 deletions(-)
Title: 'ggplot2' Pattern Geoms
Description: Provides 'ggplot2' geoms filled with various patterns. Includes a patterned version of every 'ggplot2' geom that has a region that can be filled with a pattern. Provides a suite of 'ggplot2' aesthetics and scales for controlling pattern appearances. Supports over a dozen builtin patterns (every pattern implemented by 'gridpattern') as well as allowing custom user-defined patterns.
Author: Mike FC [aut],
Trevor L Davis [aut, cre] ,
ggplot2 authors [aut]
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>
Diff between ggpattern versions 1.0.0 dated 2022-08-30 and 1.0.1 dated 2022-11-09
DESCRIPTION | 9 ++--- MD5 | 39 ++++++++++++----------- NEWS.md | 8 ++++ R/geom-.R | 12 +++---- R/geom-boxplot.R | 11 ++++-- R/geom-crossbar.R | 11 +++--- R/geom-density.R | 5 +- R/geom-map.R | 2 - R/geom-polygon.R | 15 ++++---- R/geom-rect.R | 10 +++-- R/geom-ribbon.R | 26 ++++++++------- R/geom-sf.R | 8 +++- R/geom-tile.R | 16 ++++----- R/geom-violin.R | 7 ++-- inst/doc/patterns-noise.html | 8 ++-- inst/doc/patterns-stripes.html | 4 +- man/geom-docs.Rd | 23 ++++++++----- man/ggpattern.Rd | 2 - vignettes/create-logo.R |only vignettes/create-logo.html |only vignettes/geometry-based-pattern-parameters.R |only vignettes/geometry-based-pattern-parameters.html |only vignettes/gganimate.R |only 23 files changed, 123 insertions(+), 93 deletions(-)
Title: Wavelets Statistics and Transforms
Description: Performs 1, 2 and 3D real and complex-valued wavelet transforms,
nondecimated transforms, wavelet packet transforms, nondecimated
wavelet packet transforms, multiple wavelet transforms,
complex-valued wavelet transforms, wavelet shrinkage for
various kinds of data, locally stationary wavelet time series,
nonstationary multiscale transfer function modeling, density
estimation.
Author: Guy Nason [aut, cre],
Stuart Barber [ctb],
Tim Downie [ctb],
Piotr Frylewicz [ctb],
Arne Kovac [ctb],
Todd Ogden [ctb],
Bernard Silverman [ctb]
Maintainer: Guy Nason <g.nason@imperial.ac.uk>
Diff between wavethresh versions 4.7.0 dated 2022-07-05 and 4.7.1 dated 2022-11-09
DESCRIPTION | 24 MD5 | 15 R/function.r | 4 build |only inst/CHANGES | 3 man/wavethresh-package.Rd | 33 src/WAVDE.c | 465 +++---- src/cthreb.c | 15 src/functions.c | 2870 +++++++++++++++++++++++++--------------------- 9 files changed, 1865 insertions(+), 1564 deletions(-)
Title: Quadratic Programming Solver using the 'OSQP' Library
Description: Provides bindings to the 'OSQP' solver. The 'OSQP' solver is a numerical optimization package or solving convex quadratic programs written in 'C' and based on the alternating direction method of multipliers. See <arXiv:1711.08013> for details.
Author: Bartolomeo Stellato [aut, ctb, cph],
Goran Banjac [aut, ctb, cph],
Paul Goulart [aut, ctb, cph],
Stephen Boyd [aut, ctb, cph],
Eric Anderson [ctb],
Vineet Bansal [aut, ctb],
Balasubramanian Narasimhan [cre, ctb]
Maintainer: Balasubramanian Narasimhan <naras@stanford.edu>
Diff between osqp versions 0.6.0.6 dated 2022-09-29 and 0.6.0.7 dated 2022-11-09
osqp-0.6.0.6/osqp/src/osqp_sources/tests/osqp_tester.c |only osqp-0.6.0.7/osqp/DESCRIPTION | 8 - osqp-0.6.0.7/osqp/MD5 | 65 ++++++++-- osqp-0.6.0.7/osqp/NEWS.md | 6 osqp-0.6.0.7/osqp/src/include |only osqp-0.6.0.7/osqp/src/osqp_solve_interface.cpp | 12 - osqp-0.6.0.7/osqp/src/osqp_sources/lin_sys/direct/pardiso/pardiso_interface.c | 2 osqp-0.6.0.7/osqp/src/osqp_sources/lin_sys/direct/pardiso/pardiso_loader.c | 6 osqp-0.6.0.7/osqp/src/osqp_sources/lin_sys/direct/pardiso/pardiso_loader.h | 2 osqp-0.6.0.7/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources/include/qdldl_types.h | 8 - osqp-0.6.0.7/osqp/src/osqp_sources/tests/CMakeLists.txt | 4 osqp-0.6.0.7/osqp/src/osqp_sources/tests/basic_qp/__pycache__ |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/basic_qp/data.h |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/basic_qp2/__pycache__ |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/basic_qp2/data.h |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/lin_alg/__pycache__ |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/lin_alg/data.h |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/non_cvx/__pycache__ |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/non_cvx/data.h |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/osqp_tester.c.orig |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/osqp_tester.cpp |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/primal_dual_infeasibility/__pycache__ |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/primal_dual_infeasibility/data.h |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/primal_infeasibility/__pycache__ |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/primal_infeasibility/data.h |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/solve_linsys/__pycache__ |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/solve_linsys/data.h |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/unconstrained/__pycache__ |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/unconstrained/data.h |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/update_matrices/__pycache__ |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/update_matrices/data.h |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/utils/__pycache__ |only 32 files changed, 81 insertions(+), 32 deletions(-)
Title: Convert Between 'R' Objects and Javascript Object Notation
(JSON)
Description: Conversions between 'R' objects and Javascript Object Notation (JSON) using
the 'rapidjsonr' library <https://CRAN.R-project.org/package=rapidjsonr>.
Author: David Cooley [aut, cre],
Chris Muir [ctb],
Brendan Knapp [ctb]
Maintainer: David Cooley <dcooley@symbolix.com.au>
Diff between jsonify versions 1.2.1 dated 2020-06-02 and 1.2.2 dated 2022-11-09
DESCRIPTION | 8 - MD5 | 16 +-- NEWS.md | 4 build/vignette.rds |binary inst/doc/jsonify.html | 151 +++++++++++++++++++--------------- src/RcppExports.cpp | 5 + tests/testthat/test-to_json_dates.R | 10 ++ tests/testthat/test-to_json_unbox.R | 7 + tests/testthat/test-to_json_vectors.R | 11 -- 9 files changed, 129 insertions(+), 83 deletions(-)
Title: Tidy Tools for Visualizing Mixture Models
Description: The main function, plot_mm(), is used for (gg)plotting output from mixture models,
including both densities and overlaying mixture weight component curves from the fit models in line with the
tidy principles. The package includes several additional functions for added plot customization.
Supported model objects include: 'mixtools', 'EMCluster', and 'flexmix', with more from each in active dev.
Supported mixture model specifications include mixtures of univariate Gaussians, multivariate Gaussians, Gammas,
logistic regressions, linear regressions, and Poisson regressions.
Author: Philip Waggoner [aut, cre],
Fong Chan [aut, ctb],
Lu Zhang [aut, ctb]
Maintainer: Philip Waggoner <philip.waggoner@gmail.com>
Diff between plotmm versions 0.1.0 dated 2020-07-10 and 0.1.1 dated 2022-11-09
DESCRIPTION | 25 ++++---- MD5 | 29 +++++---- NEWS | 10 ++- R/plot_cut_point.R | 4 + R/plot_gmm.R | 4 + R/plot_mix_comps.R | 2 R/plot_mix_comps_normal.R | 2 R/plot_mm.R | 2 README.md | 129 ++++++------------------------------------- build |only inst |only man/plot_cut_point.Rd | 4 + man/plot_gmm.Rd | 2 man/plot_mix_comps.Rd | 2 man/plot_mix_comps_normal.Rd | 2 vignettes |only 16 files changed, 77 insertions(+), 140 deletions(-)
Title: Item Response Theory and Computerized Adaptive Testing Functions
Description: A collection of Item Response Theory (IRT) and Computerized
Adaptive Testing (CAT) functions that are used in psychometrics.
Author: Emre Gonulates [aut, cre]
Maintainer: Emre Gonulates <egonulates@gmail.com>
Diff between irt versions 0.2.5 dated 2021-11-09 and 0.2.7 dated 2022-11-09
irt-0.2.5/irt/src/ability_estimation.cpp |only irt-0.2.5/irt/src/ability_estimation.h |only irt-0.2.7/irt/DESCRIPTION | 32 irt-0.2.7/irt/MD5 | 213 +-- irt-0.2.7/irt/NAMESPACE | 11 irt-0.2.7/irt/NEWS.md | 21 irt-0.2.7/irt/R/RcppExports.R | 479 ++++++- irt-0.2.7/irt/R/ability_estimation.R | 185 ++ irt-0.2.7/irt/R/bilog.R | 153 +- irt-0.2.7/irt/R/cat_sim.R | 431 +++++- irt-0.2.7/irt/R/cat_sim_helper_functions.R | 705 +++++++++- irt-0.2.7/irt/R/classification.R |only irt-0.2.7/irt/R/dif.R | 121 + irt-0.2.7/irt/R/flexMIRT.R |only irt-0.2.7/irt/R/generate_objects.R | 13 irt-0.2.7/irt/R/info.R | 14 irt-0.2.7/irt/R/ipd.R | 3 irt-0.2.7/irt/R/item-class-methods.R | 4 irt-0.2.7/irt/R/item-class.R | 4 irt-0.2.7/irt/R/item_analysis.R | 84 - irt-0.2.7/irt/R/item_fit.R | 6 irt-0.2.7/irt/R/itempool-class-methods.R | 143 +- irt-0.2.7/irt/R/kernel_smoothing.R | 8 irt-0.2.7/irt/R/max_score.R | 2 irt-0.2.7/irt/R/misc.R | 56 irt-0.2.7/irt/R/person_fit.R | 238 ++- irt-0.2.7/irt/R/plot_cat_output.R |only irt-0.2.7/irt/R/plot_distractor_icc.R | 5 irt-0.2.7/irt/R/plot_icc.R | 14 irt-0.2.7/irt/R/plot_info.R | 37 irt-0.2.7/irt/R/plot_item.R | 7 irt-0.2.7/irt/R/plot_itempool.R | 61 irt-0.2.7/irt/R/plot_ks.R | 7 irt-0.2.7/irt/R/plot_resp_loglik.R | 22 irt-0.2.7/irt/R/prob.R | 10 irt-0.2.7/irt/R/response_set-class-methods.R | 75 - irt-0.2.7/irt/R/rsss.R | 148 ++ irt-0.2.7/irt/R/testlet-class-methods.R | 52 irt-0.2.7/irt/build/vignette.rds |binary irt-0.2.7/irt/inst/WORDLIST | 45 irt-0.2.7/irt/inst/doc/irt-itempool.Rmd | 2 irt-0.2.7/irt/inst/doc/irt-itempool.html | 18 irt-0.2.7/irt/inst/doc/irt-models.R | 3 irt-0.2.7/irt/inst/doc/irt-models.Rmd | 24 irt-0.2.7/irt/inst/doc/irt-models.html | 27 irt-0.2.7/irt/inst/doc/irt-quick-start.html | 223 +-- irt-0.2.7/irt/man/GPCM2-class.Rd | 4 irt-0.2.7/irt/man/area_between_icc.Rd |only irt-0.2.7/irt/man/as.data.frame.Rd | 16 irt-0.2.7/irt/man/as.data.frame.cat_output.Rd |only irt-0.2.7/irt/man/c.Rd | 2 irt-0.2.7/irt/man/c.cat_design.Rd |only irt-0.2.7/irt/man/cash-.cat_output.Rd |only irt-0.2.7/irt/man/cash-Itempool-method.Rd | 6 irt-0.2.7/irt/man/cash-Testlet-method.Rd | 9 irt-0.2.7/irt/man/cash-set-Itempool-method.Rd | 7 irt-0.2.7/irt/man/cash-set-Testlet-method.Rd | 22 irt-0.2.7/irt/man/cat_sim.Rd | 9 irt-0.2.7/irt/man/classification_agreement_index.Rd |only irt-0.2.7/irt/man/classification_indices.Rd |only irt-0.2.7/irt/man/convert_model.Rd | 6 irt-0.2.7/irt/man/create_cat_design.Rd | 112 + irt-0.2.7/irt/man/cusum_single.Rd |only irt-0.2.7/irt/man/est_ability.Rd | 28 irt-0.2.7/irt/man/est_bilog.Rd | 28 irt-0.2.7/irt/man/est_flexmirt.Rd |only irt-0.2.7/irt/man/generate_ip.Rd | 2 irt-0.2.7/irt/man/generate_testlet.Rd | 2 irt-0.2.7/irt/man/get_cat_response_data.Rd | 66 irt-0.2.7/irt/man/ipd.Rd | 3 irt-0.2.7/irt/man/is.Rd | 4 irt-0.2.7/irt/man/item.Rd | 2 irt-0.2.7/irt/man/item_analysis.Rd | 29 irt-0.2.7/irt/man/item_fit.Rd | 6 irt-0.2.7/irt/man/itempool.Rd | 12 irt-0.2.7/irt/man/ks.Rd | 8 irt-0.2.7/irt/man/length.Rd | 4 irt-0.2.7/irt/man/plot.Item.Rd | 3 irt-0.2.7/irt/man/plot.Itempool.Rd | 14 irt-0.2.7/irt/man/plot.cat_output.Rd |only irt-0.2.7/irt/man/plot.ks_output.Rd | 5 irt-0.2.7/irt/man/plot_distractor_icc.Rd | 3 irt-0.2.7/irt/man/plot_empirical_icc.Rd | 4 irt-0.2.7/irt/man/plot_empirical_icc2.Rd | 2 irt-0.2.7/irt/man/plot_info.Rd | 22 irt-0.2.7/irt/man/plot_resp_loglik.Rd | 6 irt-0.2.7/irt/man/print.cat_output.Rd | 20 irt-0.2.7/irt/man/prob.Rd | 10 irt-0.2.7/irt/man/prob_sum_score.Rd |only irt-0.2.7/irt/man/qip_index.Rd |only irt-0.2.7/irt/man/rmsd.Rd |only irt-0.2.7/irt/man/score_info.Rd | 2 irt-0.2.7/irt/man/show.Rd | 8 irt-0.2.7/irt/man/summary.cat_output.Rd | 18 irt-0.2.7/irt/src/RcppExports.cpp | 533 +++++--- irt-0.2.7/irt/src/area_between_icc.cpp |only irt-0.2.7/irt/src/cat_select_next_item.cpp | 1332 ++++++++++++-------- irt-0.2.7/irt/src/cat_select_next_item.h | 5 irt-0.2.7/irt/src/cat_sim.cpp | 59 irt-0.2.7/irt/src/cat_sim_functions.cpp | 84 + irt-0.2.7/irt/src/est_ability_eap.cpp |only irt-0.2.7/irt/src/est_ability_eap.h |only irt-0.2.7/irt/src/est_ability_map.cpp |only irt-0.2.7/irt/src/est_ability_map.h |only irt-0.2.7/irt/src/est_ability_ml.cpp |only irt-0.2.7/irt/src/est_ability_ml.h |only irt-0.2.7/irt/src/est_ability_owen.cpp |only irt-0.2.7/irt/src/est_ability_owen.h |only irt-0.2.7/irt/src/gaussq2.f |only irt-0.2.7/irt/src/gh.cpp |only irt-0.2.7/irt/src/gh.h |only irt-0.2.7/irt/src/info.cpp | 185 ++ irt-0.2.7/irt/src/info.h | 10 irt-0.2.7/irt/src/item_analysis.cpp | 4 irt-0.2.7/irt/src/person_fit.cpp | 13 irt-0.2.7/irt/src/prob.cpp | 4 irt-0.2.7/irt/src/prob.h | 3 irt-0.2.7/irt/src/resp_lik.cpp | 200 +-- irt-0.2.7/irt/src/resp_loglik.cpp | 2 irt-0.2.7/irt/src/response_set_methods.cpp | 2 irt-0.2.7/irt/vignettes/irt-itempool.Rmd | 2 irt-0.2.7/irt/vignettes/irt-models.Rmd | 24 122 files changed, 4859 insertions(+), 1813 deletions(-)
Title: A Pipe-Friendly Image Calculator
Description: Provides a set of fast, chainable image-processing operations
which are applicable to images of two, three or four dimensions,
particularly medical images.
Author: Jon Clayden [aut, cre] ,
Chris Rorden [aut] ,
John Muschelli [ctb] ,
Exstrom Laboratories LLC [cph]
Maintainer: Jon Clayden <code@clayden.org>
Diff between imbibe versions 0.1.0 dated 2020-10-26 and 0.1.1 dated 2022-11-09
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 4 ++++ src/RNifti_shim.c | 2 +- src/RNifti_shim.h | 2 +- src/core.c | 2 +- src/print.h | 2 +- 7 files changed, 19 insertions(+), 15 deletions(-)
Title: Tools for Environmental Analyses, Ecotoxicology and Various R
Functions
Description: Contains miscellaneous functions useful for managing 'NetCDF' files (see <https://en.wikipedia.org/wiki/NetCDF>), get moon phase and time for sun rise and fall, tide level, analyse and reconstruct periodic time series of temperature with irregular sinusoidal pattern, show scales and wind rose in plot with change of color of text, Metropolis-Hastings algorithm for Bayesian MCMC analysis, plot graphs or boxplot with error bars, search files in disk by there names or their content, read the contents of all files from a folder at one time.
Author: Marc Girondot
Maintainer: Marc Girondot <marc.girondot@gmail.com>
Diff between HelpersMG versions 5.7 dated 2022-10-19 and 5.8 dated 2022-11-09
HelpersMG-5.7/HelpersMG/R/dSnbinom.R |only HelpersMG-5.7/HelpersMG/R/pSnbinom.R |only HelpersMG-5.7/HelpersMG/R/qSnbinom.R |only HelpersMG-5.7/HelpersMG/R/rSnbinom.R |only HelpersMG-5.7/HelpersMG/man/dSnbinom.Rd |only HelpersMG-5.7/HelpersMG/man/pSnbinom.Rd |only HelpersMG-5.7/HelpersMG/man/qSnbinom.Rd |only HelpersMG-5.7/HelpersMG/man/rSnbinom.Rd |only HelpersMG-5.8/HelpersMG/DESCRIPTION | 8 ++-- HelpersMG-5.8/HelpersMG/MD5 | 44 +++++++++-------------- HelpersMG-5.8/HelpersMG/NEWS | 10 ++++- HelpersMG-5.8/HelpersMG/R/HelpersMG-package.R | 4 +- HelpersMG-5.8/HelpersMG/R/Snbinom.R |only HelpersMG-5.8/HelpersMG/R/sysdata.rda |binary HelpersMG-5.8/HelpersMG/inst/shiny/cutter/ui.R | 2 - HelpersMG-5.8/HelpersMG/man/HelpersMG-package.Rd | 4 +- HelpersMG-5.8/HelpersMG/man/Snbinom.Rd |only HelpersMG-5.8/HelpersMG/man/cutter.Rd | 3 - HelpersMG-5.8/HelpersMG/man/dbeta_new.Rd | 3 - HelpersMG-5.8/HelpersMG/man/dcutter.Rd | 3 - HelpersMG-5.8/HelpersMG/man/ggamma.Rd | 3 - HelpersMG-5.8/HelpersMG/man/logLik.cutter.Rd | 3 - HelpersMG-5.8/HelpersMG/man/plot.cutter.Rd | 3 - HelpersMG-5.8/HelpersMG/man/print.cutter.Rd | 3 - HelpersMG-5.8/HelpersMG/man/r2norm.Rd | 3 - HelpersMG-5.8/HelpersMG/man/rcutter.Rd | 3 - HelpersMG-5.8/HelpersMG/man/rmnorm.Rd | 3 - HelpersMG-5.8/HelpersMG/man/rnbinom_new.Rd | 3 - 28 files changed, 48 insertions(+), 57 deletions(-)
Title: Access and Analyze eBird Status and Trends Data
Description: Tools to download, load, plot, and analyze eBird Status and
Trends Data Products
(<https://science.ebird.org/en/status-and-trends>). eBird
(<https://ebird.org/home>) is a global database of bird observations
collected by member of the public. eBird Status and Trends uses these
data to model global bird abundances, range boundaries, and habitat
associations at a high spatial and temporal resolution.
Author: Matthew Strimas-Mackey [aut, cre]
,
Shawn Ligocki [aut],
Tom Auer [aut] ,
Daniel Fink [aut] ,
Cornell Lab of Ornithology [cph]
Maintainer: Matthew Strimas-Mackey <mes335@cornell.edu>
Diff between ebirdst versions 1.2020.1 dated 2022-07-08 and 1.2021.0 dated 2022-11-09
DESCRIPTION | 8 - MD5 | 58 +++++----- NAMESPACE | 2 NEWS.md | 4 R/download.R | 22 ++- R/ebirdst-habitat.R | 28 ++-- R/ebirdst-ppms.R | 22 +-- R/sample.R | 7 - R/stixelize.R | 62 ++++------ R/zzz.R | 10 - data/ebirdst_predictors.rda |binary data/ebirdst_runs.rda |binary data/ebirdst_weeks.rda |binary inst/CITATION | 8 - inst/doc/ebirdst.html | 8 - inst/doc/product-changelog.Rmd | 56 +++++++++ inst/doc/product-changelog.html | 181 ++++++++++++++++++++++++++++---- inst/doc/rasters.R | 3 inst/doc/rasters.Rmd | 5 inst/doc/rasters.html | 25 ++-- inst/extdata/example-data_file-list.txt | 60 +++++----- man/ebirdst_extent.Rd | 10 - man/ebirdst_sample.Rd | 7 - man/ebirdst_subset.Rd | 8 - man/figures/README-quick_start-1.png |binary man/stixelize.Rd | 6 - tests/testthat/test_habitat.R | 2 tests/testthat/test_stixels.R | 28 +++- vignettes/product-changelog.Rmd | 56 +++++++++ vignettes/rasters.Rmd | 5 30 files changed, 468 insertions(+), 223 deletions(-)
Title: Learning Bayesian Networks with Mixed Variables
Description: Bayesian networks with continuous and/or discrete
variables can be learned and compared from data. The method is described in Boettcher and Dethlefsen (2003), <doi:10.18637/jss.v008.i20>.
Author: Susanne Gammelgaard Bottcher, Claus Dethlefsen.
Maintainer: Claus Dethlefsen <rpackage.deal@gmail.com>
Diff between deal versions 1.2-39 dated 2018-10-20 and 1.2-42 dated 2022-11-09
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ README.md |only src/init.c | 4 ++-- src/matrix.c | 6 +++--- src/matrix.h | 8 ++++---- src/postc.c | 40 ++++++++++++++++++++-------------------- src/postc0.c | 8 ++++---- 8 files changed, 44 insertions(+), 43 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-09 1.2.11
2022-08-17 1.2.10
2021-09-26 1.2.8
2021-05-28 1.2.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-19 0.1.4
2021-06-11 0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-22 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-19 1.1.0
2022-01-19 1.0.10
2021-09-30 1.0.9
2021-06-10 1.0.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-07 0.1.4
2022-09-23 0.1.2
2021-05-31 0.0.13
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-19 2.0.9
2022-02-16 2.0.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-16 1.0.0
2022-02-03 0.3.10
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-17 0.3.11
2022-02-18 0.3.10
Title: A Graphical User Interface for Testing Normality Visually
Description: Package including an interactive Shiny application for
testing normality visually.
Author: Christopher Casement [cre, aut],
Laura McSweeney [aut]
Maintainer: Christopher Casement <casementc@gmail.com>
Diff between NormalityAssessment versions 0.0.2 dated 2022-02-19 and 0.1.0 dated 2022-11-09
DESCRIPTION | 19 +- MD5 | 16 +- NAMESPACE | 1 NEWS.md | 9 + R/NormalityAssessment-package.R | 16 +- inst/CITATION | 48 +++---- inst/NormalityAssessment/server.R | 249 +++++++++++++++++++++++-------------- inst/NormalityAssessment/ui.R | 184 +++++++++++++++++---------- man/NormalityAssessment-package.Rd | 15 +- 9 files changed, 350 insertions(+), 207 deletions(-)
More information about NormalityAssessment at CRAN
Permanent link
Title: Writing 'YAML' Headers for 'R-Markdown' Documents
Description: Setting layout through 'YAML' headers in 'R-Markdown' documents,
enabling their automatic generation.
Functions and methods may summarize 'R' objects in automatic reports, for
instance check-lists and further reports applied to the packages 'taxlist'
and 'vegtable'.
Author: Miguel Alvarez [aut, cre] ,
Bisrat Haile Gebrekidan [ctb]
Maintainer: Miguel Alvarez <kamapu78@gmail.com>
Diff between yamlme versions 0.1.1 dated 2021-01-06 and 0.1.2 dated 2022-11-09
yamlme-0.1.1/yamlme/R/assign_class.R |only yamlme-0.1.1/yamlme/R/write_yaml.R |only yamlme-0.1.1/yamlme/man/assign_class.Rd |only yamlme-0.1.1/yamlme/man/write_yaml.Rd |only yamlme-0.1.1/yamlme/tests |only yamlme-0.1.2/yamlme/DESCRIPTION | 21 yamlme-0.1.2/yamlme/MD5 | 51 - yamlme-0.1.2/yamlme/NAMESPACE | 8 yamlme-0.1.2/yamlme/R/as.R |only yamlme-0.1.2/yamlme/R/classes.R |only yamlme-0.1.2/yamlme/R/imports.R | 3 yamlme-0.1.2/yamlme/R/print.R | 74 +- yamlme-0.1.2/yamlme/R/read_rmd.R | 89 +- yamlme-0.1.2/yamlme/R/render_rmd.R | 101 +-- yamlme-0.1.2/yamlme/R/update.R | 53 - yamlme-0.1.2/yamlme/R/write_rmd.R | 97 +-- yamlme-0.1.2/yamlme/build/vignette.rds |binary yamlme-0.1.2/yamlme/inst/doc/yamlme-intro.R | 109 +-- yamlme-0.1.2/yamlme/inst/doc/yamlme-intro.Rmd | 142 ++-- yamlme-0.1.2/yamlme/inst/doc/yamlme-intro.html | 764 ++++++++++++++----------- yamlme-0.1.2/yamlme/man/coerce-methods.Rd |only yamlme-0.1.2/yamlme/man/print.Rd | 30 yamlme-0.1.2/yamlme/man/print2text.Rd |only yamlme-0.1.2/yamlme/man/read_rmd.Rd | 38 - yamlme-0.1.2/yamlme/man/render_rmd.Rd | 37 - yamlme-0.1.2/yamlme/man/rmd_doc-class.Rd |only yamlme-0.1.2/yamlme/man/update.Rd | 35 - yamlme-0.1.2/yamlme/man/write_rmd.Rd | 44 - yamlme-0.1.2/yamlme/vignettes/yamlme-intro.Rmd | 142 ++-- 29 files changed, 976 insertions(+), 862 deletions(-)
Title: Solver for Delay Differential Equations
Description: Functions for solving systems of delay differential equations by
interfacing with numerical routines written by Simon N. Wood, including
contributions from Benjamin J. Cairns. These numerical routines first
appeared in Simon Wood's 'solv95' program. This package includes a vignette
and a complete user's guide. 'PBSddesolve' originally appeared on CRAN under
the name 'ddesolve'. That version is no longer supported. The current name
emphasizes a close association with other 'PBS' packages, particularly
'PBSmodelling'.
Author: Alex Couture-Beil [aut],
Jon T. Schnute [aut],
Rowan Haigh [aut, cre],
Simon N. Wood [aut],
Benjamin J. Cairns [aut],
Nicholas Boers [ctb]
Maintainer: Rowan Haigh <rowan.haigh@dfo-mpo.gc.ca>
Diff between PBSddesolve versions 1.12.6 dated 2019-12-09 and 1.13.1 dated 2022-11-09
DESCRIPTION | 10 ++-- MD5 | 27 ++++++------ R/dde.r | 6 +- R/zzz.r | 14 ++++-- inst/doc/ChangeLog.txt | 32 +++++++++++++++ inst/doc/License.txt | 2 inst/doc/PBSddesolveIntro.pdf |binary man/PBSddesolve.Rd | 11 ++--- man/dde.Rd | 6 +- src/PBSddesolve.c | 2 src/PBSddesolve.h | 2 src/ddeq.c | 87 +++++++++++++++++------------------------ src/r_model.c | 16 +------ vignettes/PBSddesolveIntro.Rnw | 14 +----- vignettes/upquote.sty |only 15 files changed, 122 insertions(+), 107 deletions(-)
Title: For Writing Geneva Graduate Institute Documents
Description: A set of tools for writing documents
according to Geneva Graduate Institute conventions and regulations.
The most common use is for writing and compiling theses or thesis
chapters, as drafts or for examination with correct preamble formatting.
However, the package also offers users to create HTML presentation
slides with 'xaringan', complete problem sets, format posters, and,
for course instructors, prepare a syllabus.
The package includes additional functions for institutional color palettes,
an institutional 'ggplot' theme, a function for counting manuscript words,
and a bibliographical analysis toolkit.
Author: James Hollway [aut, cre, cph] ,
Bernhard Bieri [ctb] ,
Henrique Sposito [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between iheiddown versions 0.9.5 dated 2022-09-27 and 0.9.7 dated 2022-11-09
iheiddown-0.9.5/iheiddown/inst/rmarkdown/templates/thesis/skeleton/front-matter/abbreviations.aux |only iheiddown-0.9.7/iheiddown/DESCRIPTION | 16 +-- iheiddown-0.9.7/iheiddown/MD5 | 41 ++++------ iheiddown-0.9.7/iheiddown/NEWS.md | 14 +++ iheiddown-0.9.7/iheiddown/R/theme.R | 25 +++--- iheiddown-0.9.7/iheiddown/README.md | 18 +--- iheiddown-0.9.7/iheiddown/build/vignette.rds |binary iheiddown-0.9.7/iheiddown/inst/doc/poster.Rmd | 2 iheiddown-0.9.7/iheiddown/inst/doc/poster.html | 6 - iheiddown-0.9.7/iheiddown/inst/doc/presentations.html | 17 +--- iheiddown-0.9.7/iheiddown/inst/doc/problemset.Rmd | 2 iheiddown-0.9.7/iheiddown/inst/doc/problemset.html | 19 +--- iheiddown-0.9.7/iheiddown/inst/doc/syllabus.Rmd | 2 iheiddown-0.9.7/iheiddown/inst/doc/syllabus.html | 6 - iheiddown-0.9.7/iheiddown/inst/doc/thesis.Rmd | 2 iheiddown-0.9.7/iheiddown/inst/doc/thesis.html | 6 - iheiddown-0.9.7/iheiddown/man/posterdown_html.Rd | 9 +- iheiddown-0.9.7/iheiddown/tests/testthat/test-theme.R | 2 iheiddown-0.9.7/iheiddown/vignettes/poster.Rmd | 2 iheiddown-0.9.7/iheiddown/vignettes/problemset.Rmd | 2 iheiddown-0.9.7/iheiddown/vignettes/syllabus.Rmd | 2 iheiddown-0.9.7/iheiddown/vignettes/thesis.Rmd | 2 22 files changed, 99 insertions(+), 96 deletions(-)
Title: Preprocessing and Feature Engineering Steps for Modeling
Description: A recipe prepares your data for modeling. We provide an
extensible framework for pipeable sequences of feature engineering
steps provides preprocessing tools to be applied to data. Statistical
parameters for the steps can be estimated from an initial data set and
then applied to other data sets. The resulting processed output can
then be used as inputs for statistical or machine learning models.
Author: Max Kuhn [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between recipes versions 1.0.2 dated 2022-10-15 and 1.0.3 dated 2022-11-09
DESCRIPTION | 16 - MD5 | 152 ++++++++--------- NAMESPACE | 33 +++ NEWS.md | 18 ++ R/bin2factor.R | 5 R/count.R | 5 R/date.R | 35 +++ R/discretize.R | 2 R/dummy.R | 7 R/dummy_multi_choice.R | 4 R/extract.R | 10 - R/format.R | 2 R/get_types_recipes.R |only R/harmonic.R | 4 R/holiday.R | 6 R/ica.R | 20 +- R/impute_mean.R | 2 R/impute_median.R | 2 R/isomap.R | 24 +- R/kpca.R | 19 +- R/kpca_poly.R | 19 +- R/kpca_rbf.R | 19 +- R/misc.R | 39 ---- R/nnmf_sparse.R | 6 R/novel.R | 14 - R/other.R | 2 R/range.R | 15 + R/ratio.R | 8 R/recipe.R | 19 ++ R/regex.R | 4 R/relevel.R | 12 - R/roles.R | 8 R/selections.R | 172 ++++++++++++++++--- R/unknown.R | 12 - R/window.R | 5 inst/doc/Dummies.html | 240 +++++++++++++-------------- inst/doc/Ordering.html | 14 - inst/doc/Roles.html | 273 +++++++++++++++---------------- inst/doc/Selecting_Variables.R | 2 inst/doc/Selecting_Variables.Rmd | 2 inst/doc/Selecting_Variables.html | 129 +++++++------- inst/doc/Skipping.html | 111 ++++++------ inst/doc/recipes.html | 111 ++++++------ inst/old-get_types.R |only man/get_data_types.Rd |only man/has_role.Rd | 99 +++++++++-- man/recipe.Rd | 29 +-- man/rmd/recipes.Rmd | 10 - man/selections.Rd | 18 +- man/step_date.Rd | 5 man/step_dummy.Rd | 3 man/step_ica.Rd | 16 - man/step_isomap.Rd | 22 +- man/step_kpca.Rd | 17 - man/step_kpca_poly.Rd | 17 - man/step_kpca_rbf.Rd | 17 - man/step_nnmf_sparse.Rd | 6 man/step_range.Rd | 5 tests/testthat/_snaps/R4.2/selections.md | 2 tests/testthat/_snaps/bin2factor.md | 4 tests/testthat/_snaps/count.md | 4 tests/testthat/_snaps/dummies.md | 2 tests/testthat/_snaps/novel.md | 4 tests/testthat/_snaps/ratio.md | 12 - tests/testthat/_snaps/regex.md | 4 tests/testthat/_snaps/relevel.md | 4 tests/testthat/_snaps/roles.md | 104 +++++------ tests/testthat/_snaps/roll.md | 4 tests/testthat/_snaps/selections.md | 4 tests/testthat/_snaps/unknown.md | 4 tests/testthat/old-get_types.RData |only tests/testthat/test-selections.R | 201 +++++++++++++++++----- tests/testthat/test-terms-select.R | 2 tests/testthat/test_basics.R | 4 tests/testthat/test_date.R | 28 +++ tests/testthat/test_dummies.R | 5 tests/testthat/test_range.R | 26 ++ tests/testthat/test_roles.R | 59 +++++- vignettes/Selecting_Variables.Rmd | 2 79 files changed, 1372 insertions(+), 973 deletions(-)
Title: Spatial Data Download and Utility Functions
Description: A suite of conversion functions to create internally standardized
spatial polygons data frames. Utility functions use these data sets to
return values such as country, state, time zone, watershed, etc. associated
with a set of longitude/latitude pairs. (They also make cool maps.)
Author: Jonathan Callahan [aut, cre],
Rachel Carroll [aut],
Eli Grosman [aut],
Roger Andre [aut],
Tom Bergamaschi [aut],
Tina Chen [aut],
Ruby Fore [aut],
Will Leahy [aut],
Helen Miller [aut],
Henry Nguyen [aut],
Robin Winstanley [aut],
Alice Yang [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaSpatialUtils versions 0.7.6 dated 2021-09-15 and 0.8.1 dated 2022-11-09
MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/R/convertCARBAirBasins.R |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/R/convertGADM.R |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/R/convertLayer.R |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/R/convertNWSFireZones.R |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/R/convertStateLegislativeDistricts.R |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/R/convertTMWorldBordersSimple.R |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/R/convertTerrestrialEcoregions.R |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/R/convertUSCensusUrbanAreas.R |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/R/convertUSIndianLands.R |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/R/convertWBDHUC.R |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/R/convertWorldTimezones.R |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/R/getHUC.R |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/R/getHUCName.R |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/R/installSpatialData_0.6.R |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/R/organizePolygons.R |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/R/subsetHUC.R |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/inst/doc/Understanding_sp_Objects.R |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/inst/doc/Understanding_sp_Objects.Rmd |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/inst/doc/Understanding_sp_Objects.html |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/inst/doc/available-data.Rmd |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/inst/doc/available-data.html |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/man/convertCARBAirBasins.Rd |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/man/convertGADM.Rd |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/man/convertNWSFireZones.Rd |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/man/convertStateLegislativeDistricts.Rd |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/man/convertTMWorldBordersSimple.Rd |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/man/convertTerrestrialEcoregions.Rd |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/man/convertUSCensusUrbanAreas.Rd |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/man/convertUSIndianLands.Rd |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/man/convertWBDHUC.Rd |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/man/convertWorldTimezones.Rd |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/man/getHUC.Rd |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/man/getHUCName.Rd |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/man/installSpatialData_0.6.Rd |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/man/organizePolygons.Rd |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/man/removeSpatialDataDir.Rd |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/man/subsetHUC.Rd |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/tests/testthat/test-getHUC.R |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/tests/testthat/test-getHUCName.R |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/vignettes/Understanding_sp_Objects.Rmd |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/vignettes/articles/Basic_GIS_in_R.Rmd |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/vignettes/articles/ebolamap.Rmd |only MazamaSpatialUtils-0.7.6/MazamaSpatialUtils/vignettes/available-data.Rmd |only MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/DESCRIPTION | 16 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/MD5 | 262 ++--- MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/NAMESPACE | 20 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/NEWS.md | 20 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/CONVERT_TEMPLATE.R | 247 ++--- MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/MazamaSpatialUtils.R | 87 - MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/convertEEZCountries.R | 242 ++--- MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/convertEPARegions.R | 248 ++--- MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/convertGACC.R | 236 ++--- MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/convertNaturalEarthAdm0.R |only MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/convertNaturalEarthAdm1.R | 411 ++++---- MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/convertOSMTimezones.R | 195 +--- MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/convertTMWorldBorders.R | 204 +--- MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/convertUSCensusCBSA.R | 206 +--- MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/convertUSCensusCongress.R | 192 +--- MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/convertUSCensusCounties.R | 206 +--- MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/convertUSCensusStates.R | 206 +--- MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/convertWeatherZones.R | 210 ++-- MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/convertWikipediaTimezoneTable.R | 87 - MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/data.R | 50 - MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/getCountry.R | 28 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/getCountryCode.R | 26 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/getCountryName.R | 29 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/getPolygonID.R | 18 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/getSpatialData.R | 223 ++-- MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/getState.R | 28 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/getStateCode.R | 30 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/getStateName.R | 30 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/getTimezone.R | 40 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/getUSCounty.R | 18 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/getVariable.R | 39 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/installSpatialData.R | 7 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/installedSpatialData.R | 2 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/loadSpatialData.R | 10 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/summarizeByPolygon.R | 25 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/R/utils-convert.R |only MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/README.md | 5 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/build/vignette.rds |binary MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/data/SimpleCountries.rda |binary MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/data/SimpleCountriesEEZ.rda |binary MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/data/SimpleTimezones.rda |binary MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/data/US_countyCodes.rda |binary MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/demo/findCountries.R | 18 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/demo/findStates.R | 27 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/demo/findTimezones.R | 14 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/inst/doc/Developer_Style_Guide.Rmd | 10 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/inst/doc/Developer_Style_Guide.html | 92 + MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/inst/doc/MazamaSpatialUtils.R | 31 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/inst/doc/MazamaSpatialUtils.Rmd | 87 - MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/inst/doc/MazamaSpatialUtils.html | 462 ++++++---- MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/inst/shiny_examples/map_app/app.R | 40 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/inst/shiny_examples/map_app/helpers/bridgePlot.R | 6 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/inst/shiny_examples/map_app/helpers/bridgeTable.R | 2 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/man/MazamaSpatialUtils.Rd | 12 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/man/SimpleCountries.Rd | 14 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/man/SimpleCountriesEEZ.Rd | 6 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/man/SimpleTimezones.Rd | 14 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/man/SpatialDataDir.Rd | 3 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/man/US_countyCodes.Rd | 12 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/man/codeToCountry.Rd | 1 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/man/codeToState.Rd | 6 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/man/convertEEZCountries.Rd | 24 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/man/convertEPARegions.Rd | 40 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/man/convertGACC.Rd | 23 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/man/convertLayer.Rd | 26 MazamaSpatialUtils-0.8.1/MazamaSpatialUtils/man/convertNaturalEarthAdm1.Rd | 52 - 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More information about MazamaSpatialUtils at CRAN
Permanent link
Title: Authoring Books and Technical Documents with R Markdown
Description: Output formats and utilities for authoring books and technical documents with R Markdown.
Author: Yihui Xie [aut, cre] ,
JJ Allaire [ctb],
Albert Kim [ctb],
Alessandro Samuel-Rosa [ctb],
Andrzej Oles [ctb],
Atsushi Yasumoto [ctb] ,
Aust Frederik [ctb] ,
Bastiaan Quast [ctb],
Ben Marwick [ctb],
Chester Ismay [ctb],
Christophe Dervieux [ctb],
Clift [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between bookdown versions 0.29 dated 2022-09-12 and 0.30 dated 2022-11-09
DESCRIPTION | 6 +- MD5 | 18 +++--- R/bs4_book.R | 6 +- R/render.R | 23 +++++--- R/site.R | 6 +- R/utils.R | 53 +++++++++++++++++-- build/vignette.rds |binary inst/doc/bookdown.html | 14 ++--- inst/rmarkdown/lua/custom-environment.lua | 13 ++++ tests/testthat/test-utils.R | 80 ++++++++++++++++++++++++++++++ 10 files changed, 179 insertions(+), 40 deletions(-)
Title: Strategy Estimation
Description: Variants of strategy estimation (Dal Bo & Frechette, 2011, <doi:10.1257/aer.101.1.411>), including the model with parameters for the choice probabilities of the strategies (Breitmoser, 2015, <doi:10.1257/aer.20130675>), and the model with individual level covariates for the selection of strategies by individuals (Dvorak & Fehrler, 2018, <doi:10.2139/ssrn.2986445>).
Author: Fabian Dvorak
Maintainer: Fabian Dvorak <fabian.dvorak@uni.kn>
Diff between stratEst versions 1.1.4 dated 2021-10-05 and 1.1.5 dated 2022-11-09
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/stratEst_check_strategies.R | 6 +++--- R/stratEst_data.R | 20 ++++++++++---------- R/stratEst_strategy.R | 12 ++++++------ src/stratEst.cpp | 14 +++++++------- 6 files changed, 35 insertions(+), 35 deletions(-)
Title: Multivariate Data Analysis for Chemometrics
Description: Projection based methods for preprocessing,
exploring and analysis of multivariate data used in chemometrics.
S. Kucheryavskiy (2020) <doi: 10.1016/j.chemolab.2020.103937>.
Author: Sergey Kucheryavskiy
Maintainer: Sergey Kucheryavskiy <svkucheryavski@gmail.com>
Diff between mdatools versions 0.13.0 dated 2022-07-14 and 0.13.1 dated 2022-11-09
DESCRIPTION | 10 +- MD5 | 24 ++--- NEWS.md | 9 + R/ipls.R | 211 ++++++++++++++++++++++++---------------------- R/regmodel.R | 19 ++-- README.md | 6 - man/ipls.Rd | 44 +++++---- man/ipls.backward.Rd | 14 +-- man/ipls.forward.Rd | 14 +-- man/plot.ipls.Rd | 4 man/plotRMSE.ipls.Rd | 18 +-- man/plotSelection.ipls.Rd | 18 +-- man/summary.ipls.Rd | 6 - 13 files changed, 214 insertions(+), 183 deletions(-)
Title: Robust One-Way ANOVA Tests under Heteroscedasticity and
Nonnormality
Description: Robust tests (RW, RPB and RGF) are provided for testing the equality of several long-tailed symmetric (LTS) means when the variances are unknown and arbitrary. RW, RPB and RGF tests are robust versions of Welch's F test proposed by Welch (1951) <doi:10.2307/2332579>, parametric bootstrap test proposed by Krishnamoorthy et. al (2007) <doi:10.1016/j.csda.2006.09.039>; and generalized F test proposed by Weerahandi (1995) <doi:10.2307/2532947>;, respectively. These tests are based on the modified maximum likelihood (MML) estimators proposed by Tiku(1967, 1968) <doi:10.2307/2333859>, <doi:10.1080/01621459.1968.11009228>.
Author: Gamze Guven [aut, cre],
Sukru Acitas [aut],
Birdal Senoglu [aut]
Maintainer: Gamze Guven <gamzeguven@ogu.edu.tr>
Diff between RobustANOVA versions 0.1.0 dated 2022-10-12 and 0.2.0 dated 2022-11-09
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- man/RGF.Rd | 2 +- man/RPB.Rd | 2 +- man/RW.Rd | 2 +- 5 files changed, 10 insertions(+), 10 deletions(-)
Title: Create R Markdown from Lists
Description: Programmatically create R Markdown documents from lists.
Author: Michael J. Kane [aut, cph, cre]
Maintainer: Michael J. Kane <michael.kane@yale.edu>
Diff between listdown versions 0.5.2 dated 2022-07-19 and 0.5.4 dated 2022-11-09
DESCRIPTION | 9 MD5 | 57 ++--- NEWS.md | 5 R/build-site.r | 10 build/vignette.rds |binary inst/doc/listdown.html | 124 ++++++------ man/ld_site_yaml.Rd | 4 tests/testthat/reference-data/as-yml.rds |binary tests/testthat/reference-data/cc-dendro.rds |binary tests/testthat/reference-data/chunk-decorator-option-1.rds |binary tests/testthat/reference-data/chunk-option-1.rds |binary tests/testthat/reference-data/chunk-option-2.rds |binary tests/testthat/reference-data/chunk-option-3.rds |binary tests/testthat/reference-data/chunk-option-4.rds |binary tests/testthat/reference-data/ld-cc-list-2-output.rds |binary tests/testthat/reference-data/listdown-page-bundle.rds |binary tests/testthat/reference-data/option-check.rds |binary tests/testthat/reference-data/option-chunk-check.rds |binary tests/testthat/reference-data/site_yaml.rds |binary tests/testthat/reference-data/test-make-chunks-1.rds |binary tests/testthat/reference-data/test-make-chunks-2.rds |binary tests/testthat/reference-data/test-no-package.rds |binary tests/testthat/reference-data/test-print-ld.rds |binary tests/testthat/reference-data/test-print-with-decorator.rds |binary tests/testthat/reference-data/test-rmarkdown-header.rds |binary tests/testthat/reference-data/test-setup-expr.rds |binary tests/testthat/reference-data/test-workflowr-header.rds |binary tests/testthat/reference-data/test_list.rds |binary tests/testthat/test-create-html-site.r | 28 +- tests/testthat/test.zip |only 30 files changed, 125 insertions(+), 112 deletions(-)
Title: A Shared Resource Interface for Bigmemory Project Packages
Description: A shared resource interface for the bigmemory and synchronicity packages.
Author: Michael J. Kane
Maintainer: Michael J. Kane <bigmemoryauthors@gmail.com>
Diff between bigmemory.sri versions 0.1.3 dated 2014-08-18 and 0.1.6 dated 2022-11-09
DESCRIPTION | 15 ++++++++----- MD5 | 12 +++++----- NAMESPACE | 11 ++++------ R/sri.R | 47 ++++++++++++++++++++++++++++++++++++++++++- man/attach.resource.Rd | 36 +++++++++++++++++++++----------- man/bigmemory.sri-package.Rd | 10 +++------ man/describe.Rd | 36 ++++++++++++++++++++++++++------ 7 files changed, 122 insertions(+), 45 deletions(-)
Title: Select Point Pattern Models Based on Minimum Contrast, AIC and
Goodness of Fit
Description: Fit and selects point pattern models based on minimum contrast, AIC and and goodness of fit.
Author: Marcelino de la Cruz
Maintainer: Marcelino de la Cruz <marcelino.delacruz@urjc.es>
Diff between selectspm versions 0.4 dated 2022-02-12 and 0.5 dated 2022-11-09
DESCRIPTION | 11 ++++++----- MD5 | 6 +++--- NAMESPACE | 4 +++- R/LF.gof.R | 25 ++++++++++++++++++++++++- 4 files changed, 36 insertions(+), 10 deletions(-)
Title: Two-Way ANOVA-Like Method to Analyze Replicated Point Patterns
Description: Test for effects of both individual factors and their interaction on replicated spatial patterns in a two factorial design, as explained in Ramon et al. (2016) <doi:10.1111/ecog.01848>.
Author: Marcelino de la Cruz Rot
Maintainer: Marcelino de la Cruz <marcelino.delacruz@urjc.es>
Diff between replicatedpp2w versions 0.1-3 dated 2021-03-14 and 0.1-4 dated 2022-11-09
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NAMESPACE | 2 +- build/partial.rdb |binary 4 files changed, 9 insertions(+), 9 deletions(-)
More information about replicatedpp2w at CRAN
Permanent link
Title: Individual Diversity-Area Relationships
Description: Computes and tests individual (species, phylogenetic and functional) diversity-area relationships, i.e., how species-, phylogenetic- and functional-diversity varies with spatial scale around the individuals of some species in a community. See applications of these methods in Wiegand et al. (2007) <doi:10.1073/pnas.0705621104> or Chacon-Labella et al. (2016) <doi:10.1007/s00442-016-3547-z>.
Author: Marcelino de la Cruz
Maintainer: Marcelino de la Cruz <marcelino.delacruz@urjc.es>
Diff between idar versions 1.3 dated 2022-02-12 and 1.4 dated 2022-11-09
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NAMESPACE | 2 +- R/localdar.R | 2 +- 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Functions for Spatial Point Pattern Analysis
Description: Some wrappers, functions and data sets for for spatial point pattern analysis (mainly based on 'spatstat'), used in the book "Introduccion al Analisis Espacial de Datos en Ecologia y Ciencias Ambientales: Metodos y Aplicaciones" and in the papers by De la Cruz et al. (2008) <doi:10.1111/j.0906-7590.2008.05299.x> and Olano et al. (2009) <doi:10.1051/forest:2008074>.
Author: Marcelino de la Cruz Rot, with contributions of Philip M. Dixon and Jose M. Blanco-Moreno
Maintainer: Marcelino de la Cruz Rot <marcelino.delacruz@urjc.es>
Diff between ecespa versions 1.1-15 dated 2022-05-02 and 1.1-16 dated 2022-11-09
DESCRIPTION | 11 ++++++----- MD5 | 6 +++--- NAMESPACE | 3 ++- R/LF.gof.R | 25 ++++++++++++++++++++++++- 4 files changed, 35 insertions(+), 10 deletions(-)
Title: 'tidyverse' Methods and 'ggplot2' Helpers for 'terra' Objects
Description: Extension of the 'tidyverse' for 'SpatRaster' and
'SpatVector' objects of the 'terra' package. It includes also new
'geom_' functions that provide a convenient way of visualizing 'terra'
objects with 'ggplot2'.
Author: Diego Hernangomez [aut, cre, cph]
,
Dewey Dunnington [ctb] ,
ggplot2 authors [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between tidyterra versions 0.3.0 dated 2022-10-12 and 0.3.1 dated 2022-11-09
tidyterra-0.3.0/tidyterra/R/autoplot.R |only tidyterra-0.3.0/tidyterra/R/scales_fill_cross_blended.R |only tidyterra-0.3.0/tidyterra/R/scales_fill_hypso.R |only tidyterra-0.3.0/tidyterra/R/scales_fill_terrain.R |only tidyterra-0.3.0/tidyterra/R/scales_fill_whitebox.R |only tidyterra-0.3.0/tidyterra/R/scales_fill_wiki.R |only tidyterra-0.3.0/tidyterra/man/autoplot.Rd |only tidyterra-0.3.0/tidyterra/man/scale_fill_cross_blended.Rd |only tidyterra-0.3.0/tidyterra/man/scale_fill_hypso.Rd |only tidyterra-0.3.0/tidyterra/man/scale_fill_terrain.Rd |only tidyterra-0.3.0/tidyterra/man/scale_fill_whitebox.Rd |only tidyterra-0.3.0/tidyterra/man/scale_fill_wiki.Rd |only tidyterra-0.3.1/tidyterra/DESCRIPTION | 6 tidyterra-0.3.1/tidyterra/MD5 | 160 +- tidyterra-0.3.1/tidyterra/NAMESPACE | 51 tidyterra-0.3.1/tidyterra/NEWS.md | 198 +- tidyterra-0.3.1/tidyterra/R/autoplot.Spat.R |only tidyterra-0.3.1/tidyterra/R/drop_na.Spat.R | 1 tidyterra-0.3.1/tidyterra/R/filter.Spat.R | 1 tidyterra-0.3.1/tidyterra/R/fortify.Spat.R |only tidyterra-0.3.1/tidyterra/R/geom_spat_contour.R | 74 - tidyterra-0.3.1/tidyterra/R/geom_spat_contour_fill.R | 66 tidyterra-0.3.1/tidyterra/R/geom_spatraster.R | 17 tidyterra-0.3.1/tidyterra/R/geom_spatraster_rgb.R | 604 ++++---- tidyterra-0.3.1/tidyterra/R/geom_spatvector.R | 297 ++-- tidyterra-0.3.1/tidyterra/R/is_regular_grid.R | 1 tidyterra-0.3.1/tidyterra/R/mutate.Spat.R | 2 tidyterra-0.3.1/tidyterra/R/pull_crs.R | 1 tidyterra-0.3.1/tidyterra/R/relocate.Spat.R | 2 tidyterra-0.3.1/tidyterra/R/rename.Spat.R | 3 tidyterra-0.3.1/tidyterra/R/replace_na.Spat.R | 2 tidyterra-0.3.1/tidyterra/R/scales_cross_blended.R |only tidyterra-0.3.1/tidyterra/R/scales_hypso.R |only tidyterra-0.3.1/tidyterra/R/scales_terrain.R |only tidyterra-0.3.1/tidyterra/R/scales_whitebox.R |only tidyterra-0.3.1/tidyterra/R/scales_wiki.R |only tidyterra-0.3.1/tidyterra/R/select.Spat.R | 1 tidyterra-0.3.1/tidyterra/R/slice.Spat.R | 12 tidyterra-0.3.1/tidyterra/R/stat_spat_coordinates.R |only tidyterra-0.3.1/tidyterra/R/stat_spatraster.R | 387 ++--- tidyterra-0.3.1/tidyterra/R/sysdata.rda |binary tidyterra-0.3.1/tidyterra/R/tidyterra-package.R | 16 tidyterra-0.3.1/tidyterra/README.md | 31 tidyterra-0.3.1/tidyterra/build/partial.rdb |binary tidyterra-0.3.1/tidyterra/build/vignette.rds |binary tidyterra-0.3.1/tidyterra/data/cross_blended_hypsometric_tints_db.rda |binary tidyterra-0.3.1/tidyterra/data/hypsometric_tints_db.rda |binary tidyterra-0.3.1/tidyterra/data/volcano2.rda |binary tidyterra-0.3.1/tidyterra/inst/WORDLIST | 3 tidyterra-0.3.1/tidyterra/inst/doc/tidyterra.Rmd | 89 - tidyterra-0.3.1/tidyterra/inst/doc/tidyterra.html | 106 - tidyterra-0.3.1/tidyterra/inst/schemaorg.json | 10 tidyterra-0.3.1/tidyterra/man/as_coordinates.Rd | 3 tidyterra-0.3.1/tidyterra/man/as_spatraster.Rd | 3 tidyterra-0.3.1/tidyterra/man/as_tibble.Spat.Rd | 3 tidyterra-0.3.1/tidyterra/man/autoplot.Spat.Rd |only tidyterra-0.3.1/tidyterra/man/fortify.Spat.Rd |only tidyterra-0.3.1/tidyterra/man/geom_spat_contour.Rd | 16 tidyterra-0.3.1/tidyterra/man/geom_spatraster.Rd | 6 tidyterra-0.3.1/tidyterra/man/geom_spatraster_rgb.Rd | 6 tidyterra-0.3.1/tidyterra/man/ggspatvector.Rd | 132 + tidyterra-0.3.1/tidyterra/man/hypsometric_tints_db.Rd | 4 tidyterra-0.3.1/tidyterra/man/reexports.Rd | 11 tidyterra-0.3.1/tidyterra/man/roxygen/meta.R | 1 tidyterra-0.3.1/tidyterra/man/scale_cross_blended.Rd |only tidyterra-0.3.1/tidyterra/man/scale_hypso.Rd |only tidyterra-0.3.1/tidyterra/man/scale_terrain.Rd |only tidyterra-0.3.1/tidyterra/man/scale_whitebox.Rd |only tidyterra-0.3.1/tidyterra/man/scale_wiki.Rd |only tidyterra-0.3.1/tidyterra/man/stat_spat_coordinates.Rd |only tidyterra-0.3.1/tidyterra/tests/testthat/test-autoplot.R | 56 tidyterra-0.3.1/tidyterra/tests/testthat/test-fortify-Spat.R |only tidyterra-0.3.1/tidyterra/tests/testthat/test-geom_spat_contour.R | 353 ++--- tidyterra-0.3.1/tidyterra/tests/testthat/test-geom_spat_contour_fill.R | 383 ++--- tidyterra-0.3.1/tidyterra/tests/testthat/test-geom_spatraster_1lyr.R | 696 +++++----- tidyterra-0.3.1/tidyterra/tests/testthat/test-geom_spatraster_rgb.R | 116 - tidyterra-0.3.1/tidyterra/tests/testthat/test-geom_spatvector.R | 14 tidyterra-0.3.1/tidyterra/tests/testthat/test-mutate-Spat.R | 1 tidyterra-0.3.1/tidyterra/tests/testthat/test-pull-Spat.R | 7 tidyterra-0.3.1/tidyterra/tests/testthat/test-relocate-Spat.R | 1 tidyterra-0.3.1/tidyterra/tests/testthat/test-scales_col_cross_blended.R |only tidyterra-0.3.1/tidyterra/tests/testthat/test-scales_col_hypso.R |only tidyterra-0.3.1/tidyterra/tests/testthat/test-scales_col_terrain.R |only tidyterra-0.3.1/tidyterra/tests/testthat/test-scales_col_whitebox.R |only tidyterra-0.3.1/tidyterra/tests/testthat/test-scales_col_wiki.R |only tidyterra-0.3.1/tidyterra/tests/testthat/test-stat_spatraster.R | 14 tidyterra-0.3.1/tidyterra/tests/testthat/test-transmute-Spat.R | 1 tidyterra-0.3.1/tidyterra/vignettes/full_spatvector-1.png |binary tidyterra-0.3.1/tidyterra/vignettes/hypso-1.png |binary tidyterra-0.3.1/tidyterra/vignettes/lux_ggplot-1.png |binary tidyterra-0.3.1/tidyterra/vignettes/rgb-1.png |binary tidyterra-0.3.1/tidyterra/vignettes/rgb-2.png |binary tidyterra-0.3.1/tidyterra/vignettes/terra_sf-1.png |binary tidyterra-0.3.1/tidyterra/vignettes/terra_sf-2.png |binary tidyterra-0.3.1/tidyterra/vignettes/terraplots-1.png |binary tidyterra-0.3.1/tidyterra/vignettes/terraplots-2.png |binary tidyterra-0.3.1/tidyterra/vignettes/terraplots-3.png |binary tidyterra-0.3.1/tidyterra/vignettes/tidyterra.Rmd | 89 - 98 files changed, 2169 insertions(+), 1888 deletions(-)
Title: Projection Predictive Feature Selection
Description: Performs projection predictive feature selection for generalized linear and
additive models as well as for generalized linear and additive multilevel
models (see Piironen, Paasiniemi and Vehtari, 2020,
<doi:10.1214/20-EJS1711>; Catalina, Bürkner and Vehtari, 2022,
<https://proceedings.mlr.press/v151/catalina22a.html>). The package is
compatible with the 'rstanarm' and 'brms' packages, but other reference
models can also be used. See the documentation as well as the package
vignette for more information and examples.
Author: Juho Piironen [aut],
Markus Paasiniemi [aut],
Alejandro Catalina [aut],
Frank Weber [cre, aut],
Aki Vehtari [aut],
Jonah Gabry [ctb],
Marco Colombo [ctb],
Paul-Christian Buerkner [ctb],
Hamada S. Badr [ctb],
Brian Sullivan [ctb],
Soelvi Roegnvaldsson [c [...truncated...]
Maintainer: Frank Weber <fweber144@protonmail.com>
Diff between projpred versions 2.2.1 dated 2022-09-20 and 2.2.2 dated 2022-11-09
DESCRIPTION | 31 +-- MD5 | 85 ++++---- NAMESPACE | 1 NEWS.md | 20 + R/cv_varsel.R | 163 ++++++++-------- R/data.R | 6 R/divergence_minimizers.R | 180 ++++++++++++++++- R/extend_family.R | 12 - R/formula.R | 31 ++- R/latent.R | 4 R/methods.R | 130 +++++++----- R/misc.R | 24 +- R/project.R | 8 R/projpred-package.R | 89 ++------ R/refmodel.R | 132 +++++++------ R/summary_funs.R | 2 R/varsel.R | 18 - README.md | 73 ++----- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 36 ++- inst/doc/projpred.R | 6 inst/doc/projpred.Rmd | 61 ++---- inst/doc/projpred.html | 396 ++++++++++++++++++++++----------------- man/cl_agg.Rd | 4 man/cv-indices.Rd | 6 man/cv_varsel.Rd | 44 ++-- man/extend_family.Rd | 10 man/mesquite.Rd | 6 man/plot.vsel.Rd | 14 - man/pred-projection.Rd | 41 ++-- man/project.Rd | 8 man/projpred-package.Rd | 88 ++------ man/refmodel-init-get.Rd | 117 +++++++---- man/solution_terms.Rd | 2 man/suggest_size.Rd | 58 +++-- man/summary.vsel.Rd | 17 + man/varsel.Rd | 18 - tests/testthat/helpers/testers.R | 15 - tests/testthat/test_datafit.R | 2 tests/testthat/test_refmodel.R | 4 tests/testthat/test_varsel.R | 7 vignettes/projpred.Rmd | 61 ++---- vignettes/references.bib |only 44 files changed, 1146 insertions(+), 884 deletions(-)
More information about jadeLizardOptions at CRAN
Permanent link
Title: Multiple Precision Arithmetic
Description: Multiple Precision Arithmetic (big integers and rationals,
prime number tests, matrix computation), "arithmetic without limitations"
using the C library GMP (GNU Multiple Precision Arithmetic).
Author: Antoine Lucas, Immanuel Scholz, Rainer Boehme <rb-gmp@reflex-studio.de>,
Sylvain Jasson <Sylvain.Jasson@inrae.fr>,
Martin Maechler <maechler@stat.math.ethz.ch>
Maintainer: Antoine Lucas <antoinelucas@gmail.com>
Diff between gmp versions 0.6-7 dated 2022-10-28 and 0.6-8 dated 2022-11-09
DESCRIPTION | 8 MD5 | 6 tests/gmp-test.R | 8 tests/gmp-test.Rout.save | 501 +++++++++++++++++++++++------------------------ 4 files changed, 268 insertions(+), 255 deletions(-)
More information about clustAnalytics at CRAN
Permanent link
Title: Dynamic Documents for R
Description: Convert R Markdown documents into a variety of formats.
Author: JJ Allaire [aut],
Yihui Xie [aut, cre] ,
Jonathan McPherson [aut],
Javier Luraschi [aut],
Kevin Ushey [aut],
Aron Atkins [aut],
Hadley Wickham [aut],
Joe Cheng [aut],
Winston Chang [aut],
Richard Iannone [aut] ,
Andrew Dunning [ctb] ,
Atsushi Yasumot [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between rmarkdown versions 2.17 dated 2022-10-07 and 2.18 dated 2022-11-09
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 9 +++++++++ R/output_format.R | 22 +++++++++++++++------- R/render.R | 19 +++++++++++-------- README.md | 2 +- build/vignette.rds |binary man/pandoc_options.Rd | 22 +++++++++++++++------- 8 files changed, 61 insertions(+), 33 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of
use. Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions. Various
matrix decompositions are provided through optional integration with
LAPACK and ATLAS libraries. The 'RcppArmadillo' package includes the
header files from the templated 'Armadillo' library. Thus users do
not need to install 'Armadillo' itself in order to use
'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is licensed
under Apache License 2; previous releases were under licensed as MPL
2.0 from version 3.800.0 onwards and LGPL-3 prior to that;
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed
under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Dirk Eddelbuettel, Romain Francois, Doug Bates, Binxiang Ni, and Conrad Sanderson
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.11.4.0.1 dated 2022-10-02 and 0.11.4.2.1 dated 2022-11-09
RcppArmadillo-0.11.4.0.1/RcppArmadillo/inst/include/RcppArmadillo/Col_meat.h |only RcppArmadillo-0.11.4.0.1/RcppArmadillo/inst/include/RcppArmadillo/Col_proto.h |only RcppArmadillo-0.11.4.0.1/RcppArmadillo/inst/include/RcppArmadillo/Mat_meat.h |only RcppArmadillo-0.11.4.0.1/RcppArmadillo/inst/include/RcppArmadillo/Mat_proto.h |only RcppArmadillo-0.11.4.0.1/RcppArmadillo/inst/include/RcppArmadillo/Row_meat.h |only RcppArmadillo-0.11.4.0.1/RcppArmadillo/inst/include/RcppArmadillo/Row_proto.h |only RcppArmadillo-0.11.4.0.1/RcppArmadillo/inst/include/RcppArmadilloConfigGenerated.h.in |only RcppArmadillo-0.11.4.2.1/RcppArmadillo/ChangeLog | 89 + RcppArmadillo-0.11.4.2.1/RcppArmadillo/DESCRIPTION | 8 RcppArmadillo-0.11.4.2.1/RcppArmadillo/MD5 | 82 - RcppArmadillo-0.11.4.2.1/RcppArmadillo/build/partial.rdb |binary RcppArmadillo-0.11.4.2.1/RcppArmadillo/build/vignette.rds |binary RcppArmadillo-0.11.4.2.1/RcppArmadillo/cleanup | 2 RcppArmadillo-0.11.4.2.1/RcppArmadillo/configure | 22 RcppArmadillo-0.11.4.2.1/RcppArmadillo/configure.ac | 4 RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/NEWS.Rd | 27 RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/doc/RcppArmadillo-intro.pdf |binary RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/doc/RcppArmadillo-sparseMatrix.pdf |binary RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/RcppArmadillo.h | 8 RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/RcppArmadillo/Alt_R_RNG.h | 151 -- RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/RcppArmadillo/Light |only RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/RcppArmadillo/Lighter |only RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/RcppArmadillo/Lightest |only RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/RcppArmadillo/RcppArmadillo |only RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/RcppArmadillo/config |only RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/RcppArmadillo/interface |only RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/RcppArmadillo/internal |only RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/RcppArmadillo/rng |only RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/RcppArmadilloAs.h | 714 ---------- RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/RcppArmadilloConfig.h | 142 - RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/RcppArmadilloForward.h | 132 - RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/RcppArmadilloSugar.h | 60 RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/RcppArmadilloWrap.h | 300 ---- RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/armadillo_bits/Cube_bones.hpp | 46 RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/armadillo_bits/Cube_meat.hpp | 192 +- RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/armadillo_bits/MapMat_meat.hpp | 20 RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/armadillo_bits/SpMat_meat.hpp | 16 RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/armadillo_bits/arma_forward.hpp | 1 RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/armadillo_bits/arma_version.hpp | 2 RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/armadillo_bits/config.hpp | 31 RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/armadillo_bits/debug.hpp | 6 RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/armadillo_bits/subview_elem1_meat.hpp | 2 RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/armadillo_bits/subview_elem2_meat.hpp | 2 RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/include/armadillo_bits/subview_field_meat.hpp | 2 RcppArmadillo-0.11.4.2.1/RcppArmadillo/inst/tinytest/test_sparseConversion.R | 2 45 files changed, 384 insertions(+), 1679 deletions(-)
Title: Linear Networks Functionality of the 'spatstat' Family
Description: Defines types of spatial data on a linear network
and provides functionality for geometrical operations,
data analysis and modelling of data on a linear network,
in the 'spatstat' family of packages.
Contains definitions and support for linear networks, including creation of networks, geometrical measurements, topological connectivity, geometrical operations such as inserting and deleting vertices, intersecting a network with another object, and interactive editing of networks.
Data types defined on a network include point patterns, pixel images, functions, and tessellations.
Exploratory methods include kernel estimation of intensity on a network, K-functions and pair correlation functions on a network, simulation envelopes, nearest neighbour distance and empty space distance, relative risk estimation with cross-validated bandwidth selection. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Mont [...truncated...]
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Greg McSwiggan [aut, cph],
Tilman Davies [ctb, cph],
Mehdi Moradi [ctb, cph],
Suman Rakshit [ctb, cph],
Ottmar Cronie [ctb]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.linnet versions 2.3-2 dated 2022-02-16 and 3.0-2 dated 2022-11-09
spatstat.linnet-2.3-2/spatstat.linnet/man/bw.relrisklpp.Rd |only spatstat.linnet-3.0-2/spatstat.linnet/DESCRIPTION | 63 +- spatstat.linnet-3.0-2/spatstat.linnet/MD5 | 211 +++++----- spatstat.linnet-3.0-2/spatstat.linnet/NAMESPACE | 37 + spatstat.linnet-3.0-2/spatstat.linnet/NEWS | 177 ++++++++ spatstat.linnet-3.0-2/spatstat.linnet/R/crossdistlpp.R | 2 spatstat.linnet-3.0-2/spatstat.linnet/R/density.loo.R | 7 spatstat.linnet-3.0-2/spatstat.linnet/R/density.lpp.R | 8 spatstat.linnet-3.0-2/spatstat.linnet/R/densityfunlpp.R | 4 spatstat.linnet-3.0-2/spatstat.linnet/R/distfunlpp.R | 11 spatstat.linnet-3.0-2/spatstat.linnet/R/envelopelpp.R | 4 spatstat.linnet-3.0-2/spatstat.linnet/R/evalcovarlppm.R | 16 spatstat.linnet-3.0-2/spatstat.linnet/R/evidencelppm.R |only spatstat.linnet-3.0-2/spatstat.linnet/R/heatapprox.R | 4 spatstat.linnet-3.0-2/spatstat.linnet/R/linearJinhom.R |only spatstat.linnet-3.0-2/spatstat.linnet/R/linearK.R | 71 +-- spatstat.linnet-3.0-2/spatstat.linnet/R/linearKeuclid.R |only spatstat.linnet-3.0-2/spatstat.linnet/R/linearKmulti.R | 22 - spatstat.linnet-3.0-2/spatstat.linnet/R/lineardisc.R | 191 +++++---- spatstat.linnet-3.0-2/spatstat.linnet/R/linearpcf.R | 21 spatstat.linnet-3.0-2/spatstat.linnet/R/linearpcfmulti.R | 23 - spatstat.linnet-3.0-2/spatstat.linnet/R/linequad.R | 2 spatstat.linnet-3.0-2/spatstat.linnet/R/linfun.R | 7 spatstat.linnet-3.0-2/spatstat.linnet/R/linim.R | 17 spatstat.linnet-3.0-2/spatstat.linnet/R/linnet.R | 135 +++++- spatstat.linnet-3.0-2/spatstat.linnet/R/linnetsurgery.R | 13 spatstat.linnet-3.0-2/spatstat.linnet/R/lintess.R | 4 spatstat.linnet-3.0-2/spatstat.linnet/R/lixellate.R | 2 spatstat.linnet-3.0-2/spatstat.linnet/R/lpp.R | 92 +++- spatstat.linnet-3.0-2/spatstat.linnet/R/lppm.R | 153 ++++--- spatstat.linnet-3.0-2/spatstat.linnet/R/nndistlpp.R | 2 spatstat.linnet-3.0-2/spatstat.linnet/R/nnfromvertex.R | 2 spatstat.linnet-3.0-2/spatstat.linnet/R/pairdistlpp.R | 2 spatstat.linnet-3.0-2/spatstat.linnet/R/perspex.R | 1 spatstat.linnet-3.0-2/spatstat.linnet/R/quickndirty.R | 53 +- spatstat.linnet-3.0-2/spatstat.linnet/R/rThomaslpp.R |only spatstat.linnet-3.0-2/spatstat.linnet/R/randomlpp.R | 22 - spatstat.linnet-3.0-2/spatstat.linnet/R/relrisk.lpp.R | 28 - spatstat.linnet-3.0-2/spatstat.linnet/R/rhohatlpp.R | 15 spatstat.linnet-3.0-2/spatstat.linnet/R/smooth.lpp.R |only spatstat.linnet-3.0-2/spatstat.linnet/inst/doc/packagesizes.txt | 1 spatstat.linnet-3.0-2/spatstat.linnet/man/Smooth.lpp.Rd |only spatstat.linnet-3.0-2/spatstat.linnet/man/auc.lpp.Rd | 8 spatstat.linnet-3.0-2/spatstat.linnet/man/berman.test.lpp.Rd | 10 spatstat.linnet-3.0-2/spatstat.linnet/man/bw.relrisk.lpp.Rd |only spatstat.linnet-3.0-2/spatstat.linnet/man/bw.voronoi.Rd | 4 spatstat.linnet-3.0-2/spatstat.linnet/man/cdf.test.lpp.Rd | 10 spatstat.linnet-3.0-2/spatstat.linnet/man/density.linnet.Rd | 8 spatstat.linnet-3.0-2/spatstat.linnet/man/densityHeat.lpp.Rd | 2 spatstat.linnet-3.0-2/spatstat.linnet/man/densityQuick.lpp.Rd | 8 spatstat.linnet-3.0-2/spatstat.linnet/man/densityVoronoi.lpp.Rd | 4 spatstat.linnet-3.0-2/spatstat.linnet/man/densityfun.lpp.Rd | 2 spatstat.linnet-3.0-2/spatstat.linnet/man/distmap.lpp.Rd |only spatstat.linnet-3.0-2/spatstat.linnet/man/domain.lpp.Rd | 2 spatstat.linnet-3.0-2/spatstat.linnet/man/envelope.lpp.Rd | 3 spatstat.linnet-3.0-2/spatstat.linnet/man/integral.linim.Rd | 13 spatstat.linnet-3.0-2/spatstat.linnet/man/linearJinhom.Rd |only spatstat.linnet-3.0-2/spatstat.linnet/man/linearK.Rd | 4 spatstat.linnet-3.0-2/spatstat.linnet/man/linearKEuclid.Rd |only spatstat.linnet-3.0-2/spatstat.linnet/man/linearKEuclidInhom.Rd |only spatstat.linnet-3.0-2/spatstat.linnet/man/linearKcross.Rd | 3 spatstat.linnet-3.0-2/spatstat.linnet/man/linearKdot.Rd | 3 spatstat.linnet-3.0-2/spatstat.linnet/man/linearKinhom.Rd | 3 spatstat.linnet-3.0-2/spatstat.linnet/man/lineardisc.Rd | 32 + spatstat.linnet-3.0-2/spatstat.linnet/man/linearpcf.Rd | 3 spatstat.linnet-3.0-2/spatstat.linnet/man/linearpcfEuclid.Rd |only spatstat.linnet-3.0-2/spatstat.linnet/man/linearpcfEuclidInhom.Rd |only spatstat.linnet-3.0-2/spatstat.linnet/man/linearpcfcross.Rd | 3 spatstat.linnet-3.0-2/spatstat.linnet/man/linearpcfdot.Rd | 3 spatstat.linnet-3.0-2/spatstat.linnet/man/linearpcfinhom.Rd | 3 spatstat.linnet-3.0-2/spatstat.linnet/man/linnet.Rd | 2 spatstat.linnet-3.0-2/spatstat.linnet/man/lpp.Rd | 2 spatstat.linnet-3.0-2/spatstat.linnet/man/macros/defns.Rd | 26 + spatstat.linnet-3.0-2/spatstat.linnet/man/marks.linnet.Rd |only spatstat.linnet-3.0-2/spatstat.linnet/man/methods.lppm.Rd | 6 spatstat.linnet-3.0-2/spatstat.linnet/man/model.frame.lppm.Rd | 2 spatstat.linnet-3.0-2/spatstat.linnet/man/model.images.lppm.Rd | 2 spatstat.linnet-3.0-2/spatstat.linnet/man/pairdist.lpp.Rd | 2 spatstat.linnet-3.0-2/spatstat.linnet/man/plot.linnet.Rd | 67 ++- spatstat.linnet-3.0-2/spatstat.linnet/man/plot.lpp.Rd | 47 +- spatstat.linnet-3.0-2/spatstat.linnet/man/predict.lppm.Rd | 63 ++ spatstat.linnet-3.0-2/spatstat.linnet/man/pseudoR2.lppm.Rd | 4 spatstat.linnet-3.0-2/spatstat.linnet/man/rThomaslpp.Rd |only spatstat.linnet-3.0-2/spatstat.linnet/man/relrisk.lpp.Rd | 4 spatstat.linnet-3.0-2/spatstat.linnet/man/rhohat.lpp.Rd | 172 +++++++- spatstat.linnet-3.0-2/spatstat.linnet/man/roc.lpp.Rd | 6 spatstat.linnet-3.0-2/spatstat.linnet/man/rpoislpp.Rd | 2 spatstat.linnet-3.0-2/spatstat.linnet/man/runiflpp.Rd | 3 spatstat.linnet-3.0-2/spatstat.linnet/man/sdr.lpp.Rd | 10 spatstat.linnet-3.0-2/spatstat.linnet/man/spatstat.linnet-deprecated.Rd | 10 spatstat.linnet-3.0-2/spatstat.linnet/man/spatstat.linnet-internal.Rd | 35 + spatstat.linnet-3.0-2/spatstat.linnet/man/spatstat.linnet-package.Rd | 6 spatstat.linnet-3.0-2/spatstat.linnet/man/terminalvertices.Rd |only spatstat.linnet-3.0-2/spatstat.linnet/man/unstack.lpp.Rd | 2 spatstat.linnet-3.0-2/spatstat.linnet/src/heatapprox.c | 24 - spatstat.linnet-3.0-2/spatstat.linnet/src/linScrossdist.c | 42 + spatstat.linnet-3.0-2/spatstat.linnet/src/linSnncross.c | 12 spatstat.linnet-3.0-2/spatstat.linnet/src/linSnncross.h | 41 - spatstat.linnet-3.0-2/spatstat.linnet/src/linSpairdist.c | 7 spatstat.linnet-3.0-2/spatstat.linnet/src/linSpairdist.h | 31 - spatstat.linnet-3.0-2/spatstat.linnet/src/lincrossdist.c | 31 - spatstat.linnet-3.0-2/spatstat.linnet/src/lineardisc.c | 75 +-- spatstat.linnet-3.0-2/spatstat.linnet/src/linearradius.c | 24 - spatstat.linnet-3.0-2/spatstat.linnet/src/linequad.h | 101 ++-- spatstat.linnet-3.0-2/spatstat.linnet/src/linknnd.h | 60 +- spatstat.linnet-3.0-2/spatstat.linnet/src/linnncross.h | 52 +- spatstat.linnet-3.0-2/spatstat.linnet/src/linnndist.c | 63 +- spatstat.linnet-3.0-2/spatstat.linnet/src/linpairdist.c | 27 - spatstat.linnet-3.0-2/spatstat.linnet/src/lintileindex.c | 25 - spatstat.linnet-3.0-2/spatstat.linnet/src/linvdist.h | 38 - spatstat.linnet-3.0-2/spatstat.linnet/src/linvknndist.c | 59 +- spatstat.linnet-3.0-2/spatstat.linnet/src/lixel.c | 36 - spatstat.linnet-3.0-2/spatstat.linnet/tests/testsAtoK.R | 23 - spatstat.linnet-3.0-2/spatstat.linnet/tests/testsL.R | 28 - spatstat.linnet-3.0-2/spatstat.linnet/tests/testsMtoZ.R | 6 115 files changed, 1852 insertions(+), 980 deletions(-)
More information about spatstat.linnet at CRAN
Permanent link
Title: Extract, Analyze and Visualize Mutational Signatures for Genomic
Variations
Description: Genomic alterations including single nucleotide substitution,
copy number alteration, etc. are the major force for cancer
initialization and development. Due to the specificity of molecular
lesions caused by genomic alterations, we can generate characteristic
alteration spectra, called 'signature' (Wang, Shixiang, et al. (2021)
<DOI:10.1371/journal.pgen.1009557> & Alexandrov, Ludmil B., et al.
(2020) <DOI:10.1038/s41586-020-1943-3> & Steele Christopher D., et al.
(2022) <DOI:10.1038/s41586-022-04738-6>). This package helps users to
extract, analyze and visualize signatures from genomic alteration
records, thus providing new insight into cancer study.
Author: Shixiang Wang [aut, cre] ,
Ziyu Tao [aut] ,
Huimin Li [aut] ,
Tao Wu [aut] ,
Xue-Song Liu [aut, ctb] ,
Anand Mayakonda [ctb]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between sigminer versions 2.1.8 dated 2022-10-20 and 2.1.9 dated 2022-11-09
DESCRIPTION | 6 +- MD5 | 30 +++++----- NAMESPACE | 1 NEWS.md | 7 ++ R/generate_matrices.R | 24 ++++++++ R/hello.R | 1 R/read_copynumber.R | 3 + R/scoring.R | 2 R/sigprofiler.R | 57 ++++++++++++++++++- README.md | 3 - inst/doc/cnsignature.html | 136 +++++++++++++++++++++++----------------------- inst/doc/sigminer.html | 12 ++-- man/read_copynumber.Rd | 3 + man/scoring.Rd | 4 - man/sig_auto_extract.Rd | 4 - man/sigprofiler.Rd | 22 ++++++- 16 files changed, 211 insertions(+), 104 deletions(-)
Title: Bayesian Additive Models for Location, Scale, and Shape (and
Beyond)
Description: Infrastructure for estimating probabilistic distributional regression models in a Bayesian framework.
The distribution parameters may capture location, scale, shape, etc. and every parameter may depend
on complex additive terms (fixed, random, smooth, spatial, etc.) similar to a generalized additive model.
The conceptual and computational framework is introduced in Umlauf, Klein, Zeileis (2019)
<doi:10.1080/10618600.2017.1407325> and the R package in Umlauf, Klein, Simon, Zeileis (2021)
<doi:10.18637/jss.v100.i04>.
Author: Nikolaus Umlauf [aut, cre] ,
Nadja Klein [aut] ,
Achim Zeileis [aut] ,
Meike Koehler [ctb],
Thorsten Simon [aut] ,
Stanislaus Stadlmann [ctb]
Maintainer: Nikolaus Umlauf <Nikolaus.Umlauf@uibk.ac.at>
Diff between bamlss versions 1.1-8 dated 2022-06-10 and 1.1-9 dated 2022-11-09
DESCRIPTION | 8 MD5 | 24 +- NAMESPACE | 1 NEWS.md | 4 R/BAMLSS.R | 110 ++++++++- R/families.R | 79 ++++++ R/optimizers.R | 55 ++++ inst/doc/bamlss.html | 562 +++++++++++++++++++++++++++++++------------------ man/bbfit.Rd | 12 - man/boost.Rd | 16 - man/continue.Rd | 2 man/family.bamlss.Rd | 2 src/bamlss_functions.c | 14 - 13 files changed, 628 insertions(+), 261 deletions(-)
Title: Flexible Regression Models for Survival Data
Description: Programs for Martinussen and Scheike (2006), `Dynamic Regression
Models for Survival Data', Springer Verlag. Plus more recent developments.
Additive survival model, semiparametric proportional odds model, fast
cumulative residuals, excess risk models and more. Flexible competing risks
regression including GOF-tests. Two-stage frailty modelling. PLS for the
additive risk model. Lasso in the 'ahaz' package.
Author: Thomas Scheike with contributions from Torben Martinussen, Jeremy
Silver and Klaus Holst
Maintainer: Thomas Scheike <ts@biostat.ku.dk>
Diff between timereg versions 2.0.3 dated 2022-10-24 and 2.0.4 dated 2022-11-09
DESCRIPTION | 8 - MD5 | 64 ++++++------ R/comprisk.r | 18 +-- R/ipcw-residualmean.r | 4 R/new.aalen.r | 2 R/new.cox-aalen.r | 5 - R/new.dynreg.r | 57 +++++------ R/prop-odds-subdist.r | 4 R/prop-odds.r | 2 R/recurrent.r | 8 - R/sim-pc-hazard.r | 12 +- R/timecox.r | 39 ++----- R/timereg-copy-package.R | 28 ++++- R/two-stage-reg.r | 4 man/comp.risk.Rd | 18 +-- man/cox.aalen.Rd | 3 man/dynreg.Rd | 42 ++++---- man/prop.Rd | 2 man/prop.odds.Rd | 2 man/prop.odds.subdist.Rd | 4 man/recurrent.marginal.coxmean.Rd | 8 - man/res.mean.Rd | 4 man/sim.cif.Rd | 11 +- man/two.stage.Rd | 4 src/additive-compSs.c | 188 +++++--------------------------------- src/breslow.c | 59 ++++++----- src/comprisk.c | 39 ++----- src/cox-aalen.c | 4 src/ipcw-residualmean.c | 28 +---- src/matrix.h | 37 ------- src/pred.c | 3 src/timeregister.c | 14 ++ src/two-stage-reg.c | 5 - 33 files changed, 268 insertions(+), 462 deletions(-)
Title: Pipe-Friendly Framework for Basic Statistical Tests
Description: Provides a simple and intuitive pipe-friendly framework, coherent with the 'tidyverse' design philosophy,
for performing basic statistical tests, including t-test, Wilcoxon test, ANOVA, Kruskal-Wallis and correlation analyses.
The output of each test is automatically transformed into a tidy data frame to facilitate visualization.
Additional functions are available for reshaping, reordering, manipulating and visualizing correlation matrix.
Functions are also included to facilitate the analysis of factorial experiments, including purely 'within-Ss' designs
(repeated measures), purely 'between-Ss' designs, and mixed 'within-and-between-Ss' designs.
It's also possible to compute several effect size metrics, including "eta squared" for ANOVA, "Cohen's d" for t-test and
'Cramer V' for the association between categorical variables.
The package contains helper functions for identifying univariate and multivariate outliers, assessing normality and homogeneity of variances.
Author: Alboukadel Kassambara [aut, cre]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>
Diff between rstatix versions 0.7.0 dated 2021-02-13 and 0.7.1 dated 2022-11-09
DESCRIPTION | 7 ++--- MD5 | 38 ++++++++++++++++---------------- NEWS.md | 21 ++++++++++++++++- R/anova_test.R | 12 +++++----- R/cor_mat.R | 2 - R/cor_plot.R | 5 ++-- R/cor_test.R | 4 --- R/dunn_test.R | 21 +++++++++++------ R/get_comparisons.R | 1 R/get_summary_stats.R | 4 ++- R/p_value.R | 2 - R/shapiro_test.R | 2 - R/utilities_two_sample_test.R | 6 ++--- README.md | 18 +++++++-------- inst/WORDLIST | 5 ++++ man/cor_mat.Rd | 2 - man/cor_plot.Rd | 5 +++- man/dunn_test.Rd | 20 ++++++++++------ tests/testthat/test-get_summary_stats.R |only tests/testthat/test-shapiro_test.R |only tests/testthat/test-wilcox_test.R | 18 +++++++++++++++ 21 files changed, 127 insertions(+), 66 deletions(-)
Title: Miscellaneous Useful Functions for Statistics
Description: A series of functions in some way considered useful to the author. These
include methods for subsetting tables and generating indices for arrays,
conditioning and intervening in probability distributions, generating
combinations, fast transformations, and more...
Author: Robin Evans [aut, cre],
Mathias Drton [ctb]
Maintainer: Robin Evans <evans@stats.ox.ac.uk>
Diff between rje versions 1.11.0 dated 2022-06-08 and 1.12.0 dated 2022-11-09
ChangeLog | 8 ++ DESCRIPTION | 17 ++---- MD5 | 22 +++++--- NAMESPACE | 4 + R/int2set.R |only R/subsetMatrix.R | 55 ++++++++++++++++++++ README.md |only build/vignette.rds |binary inst/doc/conditional_distributions.html | 17 ++++-- man/fastMobius.Rd |only man/int2set.Rd |only src/rje.c | 87 ++++++++++++++++++++++++++++++++ src/rje_init.c | 4 + tests/testthat/test-int2set.R |only tests/testthat/test-subset_ops.R |only 15 files changed, 192 insertions(+), 22 deletions(-)
Title: A Set of Tools that Enhance Reproducibility Beyond Package
Management
Description: Collection of high-level, machine- and OS-independent tools
for making deeply reproducible and reusable content in R.
The two workhorse functions are Cache and prepInputs;
these allow for: nested caching, robust to environments, and objects with
environments (like functions); and data retrieval and processing
in continuous workflow environments. In all cases,
efforts are made to make the first and subsequent calls of functions have
the same result, but vastly faster at subsequent times by way of checksums
and digesting. Several features are still under active development, including
cloud storage of cached objects, allowing for sharing between users. Several
advanced options are available, see ?reproducibleOptions.
Author: Eliot J B McIntire [aut, cre] ,
Alex M Chubaty [aut] ,
Tati Micheletti [ctb] ,
Ceres Barros [ctb] ,
Ian Eddy [ctb] ,
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>
Diff between reproducible versions 1.2.10 dated 2022-08-17 and 1.2.11 dated 2022-11-09
DESCRIPTION | 8 MD5 | 58 NEWS.md | 13 R/pipe.R | 2 R/postProcess.R | 22 R/prepInputs.R | 8 R/robustDigest.R | 2 R/zzz.R | 1 build/vignette.rds |binary inst/doc/Cache-using-postgresql.html | 15 inst/doc/Intro-to-Cache.html | 1345 +++++++++++------------ man/pipe.Rd | 2 man/pkgEnv.Rd | 2 man/reproducible-package.Rd | 2 tests/testthat/helper-allEqual.R | 65 - tests/testthat/test-cache.R | 37 tests/testthat/test-cacheHelpers.R | 7 tests/testthat/test-checksums.R | 2 tests/testthat/test-copy.R | 2 tests/testthat/test-devMode.R | 40 tests/testthat/test-download.R | 6 tests/testthat/test-examples.R | 7 tests/testthat/test-filesMissingExtension.R | 38 tests/testthat/test-gis.R | 18 tests/testthat/test-postProcess.R | 9 tests/testthat/test-postProcessTerra.R | 58 tests/testthat/test-preProcessDoesntWork.R | 144 +- tests/testthat/test-prepInputs.R | 2 tests/testthat/test-prepInputsInNestedArchives.R | 61 - tests/testthat/test-robustDigest.R | 3 30 files changed, 1010 insertions(+), 969 deletions(-)
Title: Analysis of Chronological Patterns from Archaeological Count
Data
Description: A toolkit for absolute and relative dating and analysis of
chronological patterns. This package includes functions for
chronological modeling and dating of archaeological assemblages from
count data. It provides methods for matrix seriation. It also allows
to compute time point estimates and density estimates of the occupation
and duration of an archaeological site.
Author: Nicolas Frerebeau [aut, cre] ,
Brice Lebrun [ctb] ,
Ben Marwick [ctb] ,
Anne Philippe [ctb]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between kairos versions 1.1.0 dated 2022-06-18 and 1.2.0 dated 2022-11-09
kairos-1.1.0/kairos/R/seriate_resample.R |only kairos-1.1.0/kairos/inst/doc/dating.R |only kairos-1.1.0/kairos/inst/doc/dating.Rmd |only kairos-1.1.0/kairos/inst/doc/dating.html |only kairos-1.1.0/kairos/man/RefineCA-class.Rd |only kairos-1.1.0/kairos/man/resample.Rd |only kairos-1.1.0/kairos/man/seriation.Rd |only kairos-1.1.0/kairos/vignettes/dating.Rmd |only kairos-1.2.0/kairos/DESCRIPTION | 38 kairos-1.2.0/kairos/MD5 | 147 kairos-1.2.0/kairos/NAMESPACE | 14 kairos-1.2.0/kairos/NEWS.md | 8 kairos-1.2.0/kairos/R/AllClasses.R | 25 kairos-1.2.0/kairos/R/AllGenerics.R | 383 - kairos-1.2.0/kairos/R/aoristic.R | 18 kairos-1.2.0/kairos/R/apportion.R | 4 kairos-1.2.0/kairos/R/deprecate.R |only kairos-1.2.0/kairos/R/event_date.R | 45 kairos-1.2.0/kairos/R/event_plot.R | 12 kairos-1.2.0/kairos/R/event_resample.R | 15 kairos-1.2.0/kairos/R/kairos-package.R | 8 kairos-1.2.0/kairos/R/mcd.R | 34 kairos-1.2.0/kairos/R/plot.R | 4 kairos-1.2.0/kairos/R/reexport.R | 18 kairos-1.2.0/kairos/R/seriate_average.R | 24 kairos-1.2.0/kairos/R/seriate_permute.R | 6 kairos-1.2.0/kairos/R/seriate_rank.R | 7 kairos-1.2.0/kairos/R/seriate_refine.R |only kairos-1.2.0/kairos/R/show.R | 6 kairos-1.2.0/kairos/R/subset.R | 11 kairos-1.2.0/kairos/R/utilities.R | 2 kairos-1.2.0/kairos/R/validate.R | 5 kairos-1.2.0/kairos/README.md | 39 kairos-1.2.0/kairos/build/partial.rdb |binary kairos-1.2.0/kairos/build/vignette.rds |binary kairos-1.2.0/kairos/inst/CITATION | 4 kairos-1.2.0/kairos/inst/doc/bibliography.html | 4 kairos-1.2.0/kairos/inst/doc/event.R |only kairos-1.2.0/kairos/inst/doc/event.Rmd |only kairos-1.2.0/kairos/inst/doc/event.html |only kairos-1.2.0/kairos/inst/doc/seriation.R | 130 kairos-1.2.0/kairos/inst/doc/seriation.Rmd | 157 kairos-1.2.0/kairos/inst/doc/seriation.html | 334 - kairos-1.2.0/kairos/inst/examples/ex-aoristic.R | 39 kairos-1.2.0/kairos/inst/examples/ex-event.R | 2 kairos-1.2.0/kairos/man/AoristicSum-class.Rd | 2 kairos-1.2.0/kairos/man/CountApportion-class.Rd | 2 kairos-1.2.0/kairos/man/EventDate-class.Rd | 9 kairos-1.2.0/kairos/man/IncrementTest-class.Rd | 6 kairos-1.2.0/kairos/man/MeanDate-class.Rd | 2 kairos-1.2.0/kairos/man/PermutationOrder-class.Rd | 6 kairos-1.2.0/kairos/man/RateOfChange-class.Rd | 2 kairos-1.2.0/kairos/man/RefinePermutationOrder-class.Rd |only kairos-1.2.0/kairos/man/aoristic.Rd | 50 kairos-1.2.0/kairos/man/deprecate.Rd |only kairos-1.2.0/kairos/man/event.Rd | 80 kairos-1.2.0/kairos/man/figures/README-aoristic-1.png |only kairos-1.2.0/kairos/man/figures/README-aoristic-2.png |only kairos-1.2.0/kairos/man/figures/README-seriation-1.png |binary kairos-1.2.0/kairos/man/figures/README-seriation-2.png |binary kairos-1.2.0/kairos/man/kairos-package.Rd | 6 kairos-1.2.0/kairos/man/mcd.Rd | 3 kairos-1.2.0/kairos/man/permute.Rd |only kairos-1.2.0/kairos/man/plot_aoristic.Rd | 39 kairos-1.2.0/kairos/man/plot_event.Rd | 2 kairos-1.2.0/kairos/man/reexports.Rd |only kairos-1.2.0/kairos/man/resample_event.Rd |only kairos-1.2.0/kairos/man/resample_mcd.Rd |only kairos-1.2.0/kairos/man/roc.Rd | 39 kairos-1.2.0/kairos/man/seriate_average.Rd |only kairos-1.2.0/kairos/man/seriate_rank.Rd |only kairos-1.2.0/kairos/man/seriate_refine.Rd |only kairos-1.2.0/kairos/tests/testthat/_snaps/aoristic/aoristic-groups-facet-false.svg | 20 kairos-1.2.0/kairos/tests/testthat/_snaps/aoristic/aoristic-groups-facet-true.svg | 16 kairos-1.2.0/kairos/tests/testthat/_snaps/aoristic/aoristic-raw.svg | 8 kairos-1.2.0/kairos/tests/testthat/_snaps/aoristic/aoristic-weight.svg | 8 kairos-1.2.0/kairos/tests/testthat/_snaps/aoristic/roc-groups-facet-false.svg | 16 kairos-1.2.0/kairos/tests/testthat/_snaps/aoristic/roc-groups-facet-true.svg | 12 kairos-1.2.0/kairos/tests/testthat/_snaps/event.md | 2580 +++++----- kairos-1.2.0/kairos/tests/testthat/_snaps/event/date-activity-event-false.svg | 58 kairos-1.2.0/kairos/tests/testthat/_snaps/event/date-activity-event-true.svg | 112 kairos-1.2.0/kairos/tests/testthat/_snaps/event/date-tempo.svg | 16 kairos-1.2.0/kairos/tests/testthat/_snaps/mcd.md | 1684 +++--- kairos-1.2.0/kairos/tests/testthat/test-aoristic.R | 7 kairos-1.2.0/kairos/tests/testthat/test-event.R | 7 kairos-1.2.0/kairos/vignettes/event.Rmd |only kairos-1.2.0/kairos/vignettes/seriation.Rmd | 157 87 files changed, 3229 insertions(+), 3263 deletions(-)
Title: Basic Pipe and Open Channel Hydraulics
Description: Functions for basic hydraulic calculations related to
water flow in circular pipes both flowing full (under pressure), and
partially full (gravity flow), and trapezoidal open channels. For
pressure flow this includes friction loss calculations by solving
the Darcy-Weisbach equation for head loss, flow or diameter,
plotting a Moody diagram, matching a pump characteristic curve to a system
curve, and solving for flows in a pipe network using the Hardy-Cross method.
The Darcy-Weisbach friction factor is calculated using the Colebrook
(or Colebrook-White equation), the basis of the Moody diagram, the original
citation being Colebrook (1939) <doi:10.1680/ijoti.1939.13150>. For gravity
flow, the Manning equation is used, again solving for missing parameters.
The derivation of and solutions using the Darcy-Weisbach equation and the
Manning equation are outlined in many fluid mechanics texts such as
Finnemore and Franzini (2002, ISBN:978-0072432022). Some gradually- and
rapidly-varied fl [...truncated...]
Author: Ed Maurer [aut, cre], Irucka Embry [aut, ctb]
Maintainer: Ed Maurer <emaurer@scu.edu>
Diff between hydraulics versions 0.5.0 dated 2022-10-10 and 0.6.0 dated 2022-11-09
DESCRIPTION | 11 ++-- MD5 | 32 +++++++------ NAMESPACE | 3 + NEWS.md | 9 +++ R/atmos_properties.R | 2 R/atmos_table.R | 2 R/direct_step.R |only R/f_colebrook.R | 1 R/hardy-cross.R | 66 +++++++++++++-------------- R/moody.R | 4 + R/sequent_depth.R |only R/water_table.R | 2 inst/doc/hydraulics_vignette.Rmd | 17 ++++--- inst/doc/hydraulics_vignette.html | 92 +++++++++++++++++++++----------------- man/direct_step.Rd |only man/hardycross.Rd | 28 +++++------ man/moody.Rd | 1 man/sequent_depth.Rd |only vignettes/hydraulics_vignette.Rmd | 17 ++++--- 19 files changed, 165 insertions(+), 122 deletions(-)
Title: Hacks for 'ggplot2'
Description: A 'ggplot2' extension that does a variety of little
helpful things. The package extends 'ggplot2' facets through
customisation, by setting individual scales per panel, resizing panels
and providing nested facets. Also allows multiple colour and fill
scales per plot. Also hosts a smaller collection of stats, geoms and axis
guides.
Author: Teun van den Brand [aut, cre]
Maintainer: Teun van den Brand <tahvdbrand@gmail.com>
Diff between ggh4x versions 0.2.2 dated 2022-08-14 and 0.2.3 dated 2022-11-09
DESCRIPTION | 43 +- MD5 | 159 ++++----- NAMESPACE | 7 NEWS.md | 313 +++++++++--------- R/borrowed_ggplot2.R |only R/element_part_rect.R | 468 +++++++++++++-------------- R/facet_grid2.R | 30 - R/facet_manual.R | 10 R/facet_nested.R | 25 - R/facet_wrap2.R | 24 - R/facetted_pos_scales.R | 16 R/geom_box.R |only R/geom_pointpath.R | 4 R/geom_polygonraster.R | 15 R/geom_rectrug.R | 6 R/geom_text_aimed.R | 10 R/ggh4x-package.R | 44 +- R/guide_axis_manual.R | 2 R/guide_axis_nested.R | 22 - R/guide_axis_utils.R | 4 R/guide_dendrogram.R | 2 R/guide_stringlegend.R | 8 R/scale_facet.R |only R/scale_listed.R | 394 +++++++++++----------- R/strip_nested.R | 2 R/strip_split.R | 4 R/strip_vanilla.R | 8 R/utils.R | 60 --- README.md | 115 +++--- inst/doc/Facets.R | 14 inst/doc/Facets.Rmd | 20 + inst/doc/Facets.html | 225 +++++++----- inst/doc/Miscellaneous.R | 18 + inst/doc/Miscellaneous.Rmd | 27 + inst/doc/Miscellaneous.html | 202 +++++++---- inst/doc/PositionGuides.html | 119 +++--- inst/doc/Statistics.html | 150 ++++---- inst/doc/ggh4x.html | 115 +++--- man/coord_axes_inside.Rd | 162 ++++----- man/element_part_rect.Rd | 112 +++--- man/facetted_pos_scales.Rd | 172 ++++----- man/figures/README-facets-1.png |binary man/figures/README-multicolour-1.png |binary man/geom_box.Rd |only man/geom_outline_point.Rd | 220 ++++++------ man/geom_pointpath.Rd | 20 - man/geom_polygonraster.Rd | 240 +++++++------ man/geom_rectmargin.Rd | 20 - man/geom_text_aimed.Rd | 290 ++++++++-------- man/ggh4x-package.Rd | 52 +-- man/ggh4x_extensions.Rd | 7 man/guide_axis_manual.Rd | 272 +++++++-------- man/guide_axis_minor.Rd | 198 +++++------ man/guide_axis_scalebar.Rd | 200 +++++------ man/guide_axis_truncated.Rd | 268 +++++++-------- man/guide_dendro.Rd | 190 +++++----- man/guide_stringlegend.Rd | 225 ++++++------ man/help_secondary.Rd | 208 ++++++------ man/scale_dendrogram.Rd | 237 ++++++------- man/scale_facet.Rd |only man/scale_fill_multi.Rd | 146 ++++---- man/scale_listed.Rd | 128 +++---- man/stat_difference.Rd | 252 +++++++------- man/stat_funxy.Rd | 20 - man/stat_rle.Rd | 14 man/stat_rollingkernel.Rd | 278 ++++++++-------- man/stat_theodensity.Rd | 322 +++++++++--------- man/strip_split.Rd | 204 +++++------ man/theme_extensions.Rd | 68 +-- tests/testthat.R | 8 tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/guide_axis_logticks.md | 2 tests/testthat/_snaps/guide_axis_minor.md | 2 tests/testthat/_snaps/guide_axis_nested.md | 5 tests/testthat/test-element_part_rect.R | 78 ++-- tests/testthat/test-geom_box.R |only tests/testthat/test-position_lineartrans.R | 244 +++++++------- tests/testthat/test-scale_facet.R |only tests/testthat/test-stat_rle.R | 46 +- tests/testthat/test-stat_rollingkernel.R | 60 +-- tests/testthat/test-themes.R | 40 +- tests/testthat/test-utils.R | 2 vignettes/Facets.Rmd | 20 + vignettes/Miscellaneous.Rmd | 27 + 84 files changed, 4011 insertions(+), 3733 deletions(-)
Title: Plotting Tools for Anyone Working in Deep Time
Description: Extends the functionality of other plotting packages like
'ggplot2' and 'lattice' to help facilitate the plotting of data over long time
intervals, including, but not limited to, geological, evolutionary, and ecological
data. The primary goal of 'deeptime' is to enable users to add highly customizable
timescales to their visualizations. Other functions are also included to assist
with other areas of deep time visualization.
Author: William Gearty [aut, cre]
Maintainer: William Gearty <willgearty@gmail.com>
Diff between deeptime versions 0.2.3 dated 2022-09-20 and 0.3.0 dated 2022-11-09
deeptime-0.2.3/deeptime/tests/testthat/_snaps/coord_geo/custom-discrete-scale.svg |only deeptime-0.2.3/deeptime/tests/testthat/_snaps/coord_geo/geom-fit-text.svg |only deeptime-0.2.3/deeptime/tests/testthat/_snaps/coord_geo/scale-on-all-facets.svg |only deeptime-0.2.3/deeptime/tests/testthat/_snaps/coord_geo/scale-on-discrete-axis.svg |only deeptime-0.2.3/deeptime/tests/testthat/_snaps/coord_geo/scale-on-fossil-ggtree.svg |only deeptime-0.2.3/deeptime/tests/testthat/_snaps/coord_geo/scale-on-ggtree.svg |only deeptime-0.2.3/deeptime/tests/testthat/_snaps/coord_geo/scale-on-only-one-facet.svg |only deeptime-0.2.3/deeptime/tests/testthat/_snaps/coord_geo/scales-on-different-sides.svg |only deeptime-0.2.3/deeptime/tests/testthat/_snaps/coord_geo/stacked-scales.svg |only deeptime-0.2.3/deeptime/tests/testthat/_snaps/coord_trans_flip/coord-trans-flip.svg |only deeptime-0.2.3/deeptime/tests/testthat/_snaps/coord_trans_xy/coord-trans-xy-with-expansion.svg |only deeptime-0.2.3/deeptime/tests/testthat/_snaps/coord_trans_xy/coord-trans-xy-without-expansion.svg |only deeptime-0.2.3/deeptime/tests/testthat/_snaps/disparity_through_time/disparity-through-time.svg |only deeptime-0.2.3/deeptime/tests/testthat/_snaps/ggarrange2/double-ggarrange2-layout.svg |only deeptime-0.2.3/deeptime/tests/testthat/_snaps/ggarrange2/double-ggarrange2.svg |only deeptime-0.2.3/deeptime/tests/testthat/_snaps/ggarrange2/ggarrange2-layout.svg |only deeptime-0.2.3/deeptime/tests/testthat/_snaps/ggarrange2/ggarrange2-with-layout-layout.svg |only deeptime-0.2.3/deeptime/tests/testthat/_snaps/ggarrange2/ggarrange2-with-layout.svg |only deeptime-0.2.3/deeptime/tests/testthat/_snaps/ggarrange2/ggarrange2.svg |only deeptime-0.2.3/deeptime/tests/testthat/_snaps/gggeo_scale/gggeo-scale-left-and-right.svg |only deeptime-0.2.3/deeptime/tests/testthat/_snaps/gggeo_scale/gggeo-scale-top.svg |only deeptime-0.2.3/deeptime/tests/testthat/_snaps/gggeo_scale/gggeo-scale.svg |only deeptime-0.3.0/deeptime/DESCRIPTION | 16 deeptime-0.3.0/deeptime/MD5 | 128 +- deeptime-0.3.0/deeptime/NAMESPACE | 19 deeptime-0.3.0/deeptime/NEWS.md | 10 deeptime-0.3.0/deeptime/R/coord_geo.R | 124 +- deeptime-0.3.0/deeptime/R/coord_geo_polar.R |only deeptime-0.3.0/deeptime/R/coord_trans_flip.R | 12 deeptime-0.3.0/deeptime/R/coord_trans_xy.R | 214 +++ deeptime-0.3.0/deeptime/R/disparity_through_time.R | 5 deeptime-0.3.0/deeptime/R/ggarrange2.R | 4 deeptime-0.3.0/deeptime/R/gggeo_scale.R | 86 + deeptime-0.3.0/deeptime/R/scales.R |only deeptime-0.3.0/deeptime/R/zzz.R |only deeptime-0.3.0/deeptime/README.md | 596 +++++----- deeptime-0.3.0/deeptime/man/coord_geo_polar.Rd |only deeptime-0.3.0/deeptime/man/coord_trans_flip.Rd | 96 - 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Title: Rule- And Instance-Based Regression Modeling
Description: Regression modeling using rules with added instance-based corrections.
Author: Max Kuhn [aut, cre],
Steve Weston [ctb],
Chris Keefer [ctb],
Nathan Coulter [ctb],
Ross Quinlan [aut] ,
Rulequest Research Pty Ltd. [cph]
Maintainer: Max Kuhn <mxkuhn@gmail.com>
Diff between Cubist versions 0.4.0 dated 2022-02-05 and 0.4.1 dated 2022-11-09
DESCRIPTION | 6 MD5 | 26 +- NEWS.md | 4 build/vignette.rds |binary inst/doc/cubist.html | 559 ++++++++++++++++++++++++++++++++++++++++---------- src/formrules.c | 6 src/getdata.c | 2 src/hash.h | 2 src/modelfiles.c | 2 src/rcubist.c | 2 src/redefine.c | 4 src/redefine.h | 4 src/rulebasedmodels.c | 4 src/top.c | 2 14 files changed, 482 insertions(+), 141 deletions(-)
Title: Clique Percolation for Networks
Description: Clique percolation community detection for weighted and
unweighted networks as well as threshold and plotting functions.
For more information see Farkas et al. (2007) <doi:10.1088/1367-2630/9/6/180>
and Palla et al. (2005) <doi:10.1038/nature03607>.
Author: Jens Lange [aut, cre],
Janis Zickfeld [ctb],
Alexander P. Christensen [ctb],
Pedro Henrique Ribeiro Santiago [ctb]
Maintainer: Jens Lange <lange.jens@outlook.com>
Diff between CliquePercolation versions 0.3.0 dated 2021-05-29 and 0.4.0 dated 2022-11-09
DESCRIPTION | 21 MD5 | 32 NAMESPACE | 2 NEWS | 6 R/CliquePercolation.R | 5 R/FuzzyMod.R |only R/SignedFuzzyMod.R |only R/cpThreshold.R | 231 +++-- build/partial.rdb |only build/vignette.rds |binary inst/CITATION |only inst/doc/CliquePercolation.R | 7 inst/doc/CliquePercolation.Rmd | 26 inst/doc/CliquePercolation.html | 1545 +++++++++++++++++++++++++++------------ man/CliquePercolation-package.Rd | 10 man/FuzzyMod.Rd |only man/SignedFuzzyMod.Rd |only man/cpThreshold.Rd | 39 vignettes/CliquePercolation.Rmd | 26 vignettes/bibtex.bib | 8 20 files changed, 1367 insertions(+), 591 deletions(-)
More information about CliquePercolation at CRAN
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Title: Inferring Causal Effects using Bayesian Structural Time-Series
Models
Description: Implements a Bayesian approach to causal impact estimation in time
series, as described in Brodersen et al. (2015) <DOI:10.1214/14-AOAS788>.
See the package documentation on GitHub
<https://google.github.io/CausalImpact/> to get started.
Author: Kay H. Brodersen <kbrodersen@google.com>,
Alain Hauser <alhauser@google.com>
Maintainer: Alain Hauser <alhauser@google.com>
Diff between CausalImpact versions 1.2.7 dated 2021-06-07 and 1.3.0 dated 2022-11-09
DESCRIPTION | 14 ++++----- MD5 | 32 ++++++++++----------- R/impact_analysis.R | 38 ++++++++++++++----------- R/impact_inference.R | 37 ++++++++++++++++++------ R/impact_misc.R | 2 - R/impact_model.R | 2 - R/impact_plot.R | 6 ++-- README.md | 1 build/vignette.rds |binary inst/doc/CausalImpact.html | 49 ++++++++++++++++++--------------- tests/CausalImpact_import_test.R | 2 - tests/testthat.R | 2 - tests/testthat/test-impact-analysis.R | 29 ++++++++++++++++++- tests/testthat/test-impact-inference.R | 22 ++++++++++++-- tests/testthat/test-impact-misc.R | 2 - tests/testthat/test-impact-model.R | 2 - tests/testthat/test-impact-plot.R | 2 - 17 files changed, 158 insertions(+), 84 deletions(-)
Title: C5.0 Decision Trees and Rule-Based Models
Description: C5.0 decision trees and rule-based models for pattern recognition that extend the work of Quinlan (1993, ISBN:1-55860-238-0).
Author: Max Kuhn [aut, cre],
Steve Weston [ctb],
Mark Culp [ctb],
Nathan Coulter [ctb],
Ross Quinlan [aut] ,
RuleQuest Research [cph] ,
Rulequest Research Pty Ltd. [cph]
Maintainer: Max Kuhn <mxkuhn@gmail.com>
Diff between C50 versions 0.1.6 dated 2022-02-05 and 0.1.7 dated 2022-11-09
DESCRIPTION | 8 MD5 | 54 ++-- NEWS.md | 4 build/vignette.rds |binary inst/doc/C5.0.html | 426 +++++++++++++++++++++++++++------- inst/doc/Class_Probability_Calcs.html | 419 +++++++++++++++++++++++++++------ src/attwinnow.c | 2 src/classify.c | 2 src/construct.c | 6 src/defns.h | 4 src/formrules.c | 10 src/formtree.c | 6 src/getdata.c | 4 src/getnames.c | 4 src/hash.h | 2 src/implicitatt.c | 18 - src/modelfiles.c | 20 - src/prune.c | 2 src/rc50.c | 2 src/redefine.c | 4 src/redefine.h | 4 src/rsample.c | 2 src/rulebasedmodels.c | 4 src/siftrules.c | 24 - src/subset.c | 2 src/top.c | 2 src/utility.c | 12 src/xval.c | 6 28 files changed, 798 insertions(+), 255 deletions(-)
Title: Text Tokenization using Byte Pair Encoding and Unigram Modelling
Description: Unsupervised text tokenizer allowing to perform byte pair encoding and unigram modelling.
Wraps the 'sentencepiece' library <https://github.com/google/sentencepiece> which provides a language independent tokenizer to split text in words and smaller subword units.
The techniques are explained in the paper "SentencePiece: A simple and language independent subword tokenizer and detokenizer for Neural Text Processing" by Taku Kudo and John Richardson (2018) <doi:10.18653/v1/D18-2012>.
Provides as well straightforward access to pretrained byte pair encoding models and subword embeddings trained on Wikipedia using 'word2vec',
as described in "BPEmb: Tokenization-free Pre-trained Subword Embeddings in 275 Languages" by Benjamin Heinzerling and Michael Strube (2018) <http://www.lrec-conf.org/proceedings/lrec2018/pdf/1049.pdf>.
Author: Jan Wijffels [aut, cre, cph] ,
BNOSAC [cph] ,
Google Inc. [ctb, cph] ,
The Abseil Authors [ctb, cph] ,
Google Inc. [ctb, cph] ),
Kenton Varda [ctb, cph] ),
Sanjay Ghemawat [ctb, cph] ),
Jeff Dean [ctb, cph] ),
Laszlo Csomor [ctb, cph] ),
Wink Sav [...truncated...]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between sentencepiece versions 0.2.1 dated 2021-12-21 and 0.2.2 dated 2022-11-09
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ src/third_party/protobuf-lite/strutil.cc | 3 +-- 4 files changed, 12 insertions(+), 9 deletions(-)
Title: Allocate Samples Among Strata
Description: Functions for the design process of survey sampling, with specific tools for multi-wave and multi-phase designs. Perform optimum allocation using Neyman (1934) <doi:10.2307/2342192> or Wright (2012) <doi:10.1080/00031305.2012.733679> allocation, split strata based on quantiles or values of known variables, randomly select samples from strata, allocate sampling waves iteratively, and organize a complex survey design. Also includes a Shiny application for observing the effects of different strata splits.
Author: Jasper Yang [aut, cre],
Pamela Shaw [aut],
Bryan Shepherd [ctb],
Thomas Lumley [ctb],
Gustavo Amorim [rev]
Maintainer: Jasper Yang <yangjasp@grinnell.edu>
Diff between optimall versions 0.1.1 dated 2022-02-09 and 0.1.2 dated 2022-11-09
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++++++ inst/doc/optimall-vignette.html | 2 +- tests/testthat/test-optimall_shiny.R | 3 ++- 5 files changed, 16 insertions(+), 9 deletions(-)