Title: Fast Imputations Using 'Rcpp' and 'Armadillo'
Description: Fast imputations under the object-oriented programming paradigm.
Moreover there are offered a few functions built to work with popular R packages such as 'data.table' or 'dplyr'.
The biggest improvement in time performance could be achieve for a calculation where a grouping variable have to be used.
A single evaluation of a quantitative model for the multiple imputations is another major enhancement.
A new major improvement is one of the fastest predictive mean matching in the R world because of presorting and binary search.
Author: Maciej Nasinski [aut, cre]
Maintainer: Maciej Nasinski <nasinski.maciej@gmail.com>
Diff between miceFast versions 0.8.1 dated 2022-03-13 and 0.8.2 dated 2022-11-17
DESCRIPTION | 8 - MD5 | 54 ++++----- NAMESPACE | 1 NEWS.md | 9 + R/VIF.R | 23 ++- R/data.R | 2 R/fill_NA.R | 63 +++++----- R/fill_NA_N.R | 65 +++++------ R/naive_fill_NA.R | 212 ++++++++++++++---------------------- R/plots.R | 38 +++--- README.md | 24 +--- build/vignette.rds |binary inst/doc/miceFast-intro.R | 39 +++--- inst/doc/miceFast-intro.Rmd | 42 +++---- inst/doc/miceFast-intro.html | 198 ++++++++++++++++----------------- man/VIF.Rd | 21 ++- man/air_miss.Rd | 4 man/compare_imp.Rd | 22 +-- man/fill_NA.Rd | 65 +++++------ man/fill_NA_N.Rd | 67 +++++------ man/miceFast-package.Rd | 51 +++----- man/naive_fill_NA.Rd | 29 +++- src/R_funs.cpp | 95 ++-------------- tests/testthat/Rplots.pdf |binary tests/testthat/test-fill_NA_funcs.R | 8 - tests/testthat/test-naive_fill_NA.R | 56 ++++++--- tests/testthat/test-vif.R | 20 +-- vignettes/miceFast-intro.Rmd | 42 +++---- 28 files changed, 595 insertions(+), 663 deletions(-)
Title: A Tool Kit for Working with Time Series in R
Description: Easy visualization, wrangling, and feature engineering of time series data for
forecasting and machine learning prediction. Consolidates and extends time series functionality
from packages including 'dplyr', 'stats', 'xts', 'forecast', 'slider', 'padr', 'recipes', and 'rsample'.
Author: Matt Dancho [aut, cre],
Davis Vaughan [aut]
Maintainer: Matt Dancho <mdancho@business-science.io>
Diff between timetk versions 2.8.1 dated 2022-05-31 and 2.8.2 dated 2022-11-17
timetk-2.8.1/timetk/vignettes/temp_folder |only timetk-2.8.2/timetk/DESCRIPTION | 8 timetk-2.8.2/timetk/MD5 | 430 +- timetk-2.8.2/timetk/NAMESPACE | 772 +-- timetk-2.8.2/timetk/NEWS.md | 970 ++-- timetk-2.8.2/timetk/R/00_global_vars.R | 24 timetk-2.8.2/timetk/R/augment-tk_augment_differences.R | 324 - timetk-2.8.2/timetk/R/augment-tk_augment_fourier.R | 320 - timetk-2.8.2/timetk/R/augment-tk_augment_holiday_signature.R | 342 - timetk-2.8.2/timetk/R/augment-tk_augment_lags.R | 494 +- timetk-2.8.2/timetk/R/augment-tk_augment_slidify.R | 406 - timetk-2.8.2/timetk/R/augment-tk_augment_timeseries.R | 342 - timetk-2.8.2/timetk/R/coersion-tk_tbl.R | 564 +- timetk-2.8.2/timetk/R/coersion-tk_ts.R | 386 - timetk-2.8.2/timetk/R/coersion-tk_xts.R | 462 +- timetk-2.8.2/timetk/R/coersion-tk_zoo.R | 198 timetk-2.8.2/timetk/R/coersion-tk_zooreg.R | 430 +- timetk-2.8.2/timetk/R/data-bike_sharing.R | 78 timetk-2.8.2/timetk/R/data-m4_daily.R | 44 timetk-2.8.2/timetk/R/data-m4_hourly.R | 44 timetk-2.8.2/timetk/R/data-m4_monthly.R | 44 timetk-2.8.2/timetk/R/data-m4_quarterly.R | 44 timetk-2.8.2/timetk/R/data-m4_weekly.R | 46 timetk-2.8.2/timetk/R/data-m4_yearly.R | 46 timetk-2.8.2/timetk/R/data-taylor_30_min.R | 40 timetk-2.8.2/timetk/R/data-walmart_sales_weekly.R | 98 timetk-2.8.2/timetk/R/data-wikipedia_traffic_daily.R | 54 timetk-2.8.2/timetk/R/diagnostics-tk_acf_diagnostics.R | 492 +- timetk-2.8.2/timetk/R/diagnostics-tk_anomaly_diagnostics.R | 616 +- timetk-2.8.2/timetk/R/diagnostics-tk_seasonal_diagnostics.R | 488 +- timetk-2.8.2/timetk/R/diagnostics-tk_stl_diagnostics.R | 328 - 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timetk-2.8.2/timetk/man/tk_get_timeseries.Rd | 148 timetk-2.8.2/timetk/man/tk_get_timeseries_unit_frequency.Rd | 42 timetk-2.8.2/timetk/man/tk_get_timeseries_variables.Rd | 64 timetk-2.8.2/timetk/man/tk_index.Rd | 164 timetk-2.8.2/timetk/man/tk_make_future_timeseries.Rd | 300 - timetk-2.8.2/timetk/man/tk_make_holiday_sequence.Rd | 266 - timetk-2.8.2/timetk/man/tk_make_timeseries.Rd | 360 - timetk-2.8.2/timetk/man/tk_seasonal_diagnostics.Rd | 180 timetk-2.8.2/timetk/man/tk_stl_diagnostics.Rd | 168 timetk-2.8.2/timetk/man/tk_summary_diagnostics.Rd | 98 timetk-2.8.2/timetk/man/tk_tbl.Rd | 226 - timetk-2.8.2/timetk/man/tk_time_scale_template.Rd | 90 timetk-2.8.2/timetk/man/tk_time_series_cv_plan.Rd | 102 timetk-2.8.2/timetk/man/tk_ts.Rd | 240 - timetk-2.8.2/timetk/man/tk_ts_dispatch_.Rd | 96 timetk-2.8.2/timetk/man/tk_tsfeatures.Rd | 236 - timetk-2.8.2/timetk/man/tk_xts.Rd | 182 timetk-2.8.2/timetk/man/tk_zoo.Rd | 188 timetk-2.8.2/timetk/man/tk_zooreg.Rd | 258 - timetk-2.8.2/timetk/man/tk_zooreg_dispatch_.Rd | 174 timetk-2.8.2/timetk/man/ts_clean_vec.Rd | 162 timetk-2.8.2/timetk/man/ts_impute_vec.Rd | 166 timetk-2.8.2/timetk/man/walmart_sales_weekly.Rd | 126 timetk-2.8.2/timetk/man/wikipedia_traffic_daily.Rd | 76 timetk-2.8.2/timetk/tests/testthat.R | 26 timetk-2.8.2/timetk/tests/testthat/test-dplyr-pad_by_time.R | 60 timetk-2.8.2/timetk/tests/testthat/test-recipes-step_timeseries_signature.R | 96 timetk-2.8.2/timetk/tests/testthat/test-rsample-time_series_cv.R | 366 - timetk-2.8.2/timetk/tests/testthat/test-tk_augment_timeseries.R | 120 timetk-2.8.2/timetk/tests/testthat/test-tk_get_timeseries.R | 316 - timetk-2.8.2/timetk/tests/testthat/test-tk_index.R | 666 +-- timetk-2.8.2/timetk/tests/testthat/test-tk_make_timeseries.R | 190 timetk-2.8.2/timetk/tests/testthat/test-tk_make_timeseries_future-OLD.R | 906 ++-- timetk-2.8.2/timetk/tests/testthat/test-tk_make_timeseries_future.R | 826 +-- timetk-2.8.2/timetk/tests/testthat/test-tk_tbl.R | 296 - timetk-2.8.2/timetk/tests/testthat/test-tk_ts.R | 156 timetk-2.8.2/timetk/tests/testthat/test-tk_xts.R | 164 timetk-2.8.2/timetk/tests/testthat/test-tk_zoo.R | 122 timetk-2.8.2/timetk/tests/testthat/test-tk_zooreg.R | 134 timetk-2.8.2/timetk/vignettes/TK04_Plotting_Time_Series.Rmd | 462 +- timetk-2.8.2/timetk/vignettes/TK07_Time_Series_Data_Wrangling.Rmd | 536 +- timetk-2.8.2/timetk/vignettes/temp_archive |only 210 files changed, 33382 insertions(+), 32847 deletions(-)
Title: Spherical Geometry Operators Using the S2 Geometry Library
Description: Provides R bindings for Google's s2 library for geometric calculations on
the sphere. High-performance constructors and exporters provide high compatibility
with existing spatial packages, transformers construct new geometries from existing
geometries, predicates provide a means to select geometries based on spatial
relationships, and accessors extract information about geometries.
Author: Dewey Dunnington [aut] ,
Edzer Pebesma [aut, cre] ,
Ege Rubak [aut],
Jeroen Ooms [ctb] ,
Google, Inc. [cph]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between s2 versions 1.1.0 dated 2022-07-18 and 1.1.1 dated 2022-11-17
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ build/partial.rdb |binary src/absl/container/internal/raw_hash_set.h | 6 +++++- src/absl/strings/internal/string_constant.h | 4 ++++ src/s2/util/math/exactfloat/exactfloat.cc | 4 ++-- 7 files changed, 24 insertions(+), 12 deletions(-)
Title: Greedy Experimental Design Construction
Description: Computes experimental designs for a
two-arm experiment with covariates via a number of methods:
(0) complete randomization and randomization with forced-balance,
(1) Greedily optimizing a
balance objective function via pairwise switching. This optimization
provides lower variance for the treatment effect estimator (and higher
power) while preserving a design that is close to complete randomization.
We return all iterations of the designs for use in a permutation test,
(2) The second is via numerical optimization
(via 'gurobi' which must be installed, see <https://www.gurobi.com/documentation/9.1/quickstart_windows/r_ins_the_r_package.html>)
a la Bertsimas and Kallus,
(3) rerandomization,
(4) Karp's method for one covariate,
(5) exhaustive enumeration to find the
optimal solution (only for small sample sizes),
(6) Binary pair matching using the 'nbpMatching' library,
(7) Binary pair matching plus design number (1) to further optimize balance,
(8) Binary pair matching plus design n [...truncated...]
Author: Adam Kapelner [aut, cre] ,
David Azriel [aut],
Abba Krieger [aut]
Maintainer: Adam Kapelner <kapelner@qc.cuny.edu>
Diff between GreedyExperimentalDesign versions 1.5 dated 2022-11-04 and 1.5.5 dated 2022-11-17
GreedyExperimentalDesign-1.5.5/GreedyExperimentalDesign/CHANGELOG | 4 GreedyExperimentalDesign-1.5.5/GreedyExperimentalDesign/DESCRIPTION | 8 GreedyExperimentalDesign-1.5.5/GreedyExperimentalDesign/MD5 | 27 - GreedyExperimentalDesign-1.5.5/GreedyExperimentalDesign/NAMESPACE | 7 GreedyExperimentalDesign-1.5.5/GreedyExperimentalDesign/R/binary_match_followed_by_greedy_search.R | 10 GreedyExperimentalDesign-1.5.5/GreedyExperimentalDesign/R/binary_match_followed_by_rerandomization_search.R | 10 GreedyExperimentalDesign-1.5.5/GreedyExperimentalDesign/R/binary_match_search.R | 240 ++++++---- GreedyExperimentalDesign-1.5.5/GreedyExperimentalDesign/R/rerandomization_search.R | 11 GreedyExperimentalDesign-1.5.5/GreedyExperimentalDesign/inst/java/GreedyExperimentalDesign.jar |binary GreedyExperimentalDesign-1.5.5/GreedyExperimentalDesign/man/computeBinaryMatchStructure.Rd |only GreedyExperimentalDesign-1.5.5/GreedyExperimentalDesign/man/initBinaryMatchExperimentalDesignSearch.Rd | 41 - GreedyExperimentalDesign-1.5.5/GreedyExperimentalDesign/man/print.binary_match_structure.Rd |only GreedyExperimentalDesign-1.5.5/GreedyExperimentalDesign/man/print.pairwise_matching_experimental_design_search.Rd |only GreedyExperimentalDesign-1.5.5/GreedyExperimentalDesign/man/resultsBinaryMatchSearch.Rd | 24 - GreedyExperimentalDesign-1.5.5/GreedyExperimentalDesign/man/summary.binary_match_structure.Rd |only GreedyExperimentalDesign-1.5.5/GreedyExperimentalDesign/man/summary.pairwise_matching_experimental_design_search.Rd |only GreedyExperimentalDesign-1.5/GreedyExperimentalDesign/man/print.binary_experimental_design.Rd |only GreedyExperimentalDesign-1.5/GreedyExperimentalDesign/man/summary.binary_experimental_design.Rd |only 18 files changed, 218 insertions(+), 164 deletions(-)
More information about GreedyExperimentalDesign at CRAN
Permanent link
Title: Multivariate Dependence with Copulas
Description: Classes (S4) of commonly used elliptical, Archimedean,
extreme-value and other copula families, as well as their rotations,
mixtures and asymmetrizations. Nested Archimedean copulas, related
tools and special functions. Methods for density, distribution, random
number generation, bivariate dependence measures, Rosenblatt transform,
Kendall distribution function, perspective and contour plots. Fitting of
copula models with potentially partly fixed parameters, including
standard errors. Serial independence tests, copula specification tests
(independence, exchangeability, radial symmetry, extreme-value
dependence, goodness-of-fit) and model selection based on
cross-validation. Empirical copula, smoothed versions, and
non-parametric estimators of the Pickands dependence function.
Author: Marius Hofert [aut] ,
Ivan Kojadinovic [aut] ,
Martin Maechler [aut, cre] ,
Jun Yan [aut] ,
Johanna G. Neslehova [ctb] ,
<https://orcid.org/0000-0001-9634-4796>),
Rebecca Morger [ctb] : code for free mixCopula weight
parameters)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between copula versions 1.1-0 dated 2022-06-15 and 1.1-1 dated 2022-11-17
copula-1.1-0/copula/inst/doc/AC_Liouville.R |only copula-1.1-0/copula/inst/doc/AR_Clayton.R |only copula-1.1-0/copula/inst/doc/GIG.R |only copula-1.1-0/copula/inst/doc/HAXC.R |only copula-1.1-0/copula/inst/doc/NALC.R |only copula-1.1-0/copula/inst/doc/copula_GARCH.R |only copula-1.1-0/copula/inst/doc/dNAC.R |only copula-1.1-0/copula/inst/doc/empiricial_copulas.R |only copula-1.1-0/copula/inst/doc/logL_visualization.R |only copula-1.1-0/copula/inst/doc/qrng.R |only copula-1.1-0/copula/inst/doc/wild_animals.R |only copula-1.1-1/copula/DESCRIPTION | 16 copula-1.1-1/copula/MD5 | 81 - copula-1.1-1/copula/build/partial.rdb |binary copula-1.1-1/copula/build/vignette.rds |binary copula-1.1-1/copula/inst/NEWS.Rd | 10 copula-1.1-1/copula/inst/doc/AC_Liouville.Rmd | 23 copula-1.1-1/copula/inst/doc/AC_Liouville.html | 297 ------- copula-1.1-1/copula/inst/doc/AR_Clayton.html | 345 +------- copula-1.1-1/copula/inst/doc/Frank-Rmpfr.pdf |binary copula-1.1-1/copula/inst/doc/GIG.html | 659 +++++---------- copula-1.1-1/copula/inst/doc/HAXC.Rmd | 8 copula-1.1-1/copula/inst/doc/HAXC.html | 589 ++++--------- copula-1.1-1/copula/inst/doc/NALC.html | 631 ++++---------- copula-1.1-1/copula/inst/doc/copula_GARCH.html | 379 +------- copula-1.1-1/copula/inst/doc/dNAC.Rmd | 31 copula-1.1-1/copula/inst/doc/dNAC.html | 481 +++-------- copula-1.1-1/copula/inst/doc/empiricial_copulas.Rmd | 33 copula-1.1-1/copula/inst/doc/empiricial_copulas.html | 566 ++++--------- copula-1.1-1/copula/inst/doc/logL_visualization.html | 795 ++++++------------ copula-1.1-1/copula/inst/doc/nacopula-pkg.pdf |binary copula-1.1-1/copula/inst/doc/qrng.Rmd | 78 - copula-1.1-1/copula/inst/doc/qrng.html | 758 ++++++----------- copula-1.1-1/copula/inst/doc/rhoAMH-dilog.pdf |binary copula-1.1-1/copula/inst/doc/wild_animals.Rmd | 26 copula-1.1-1/copula/inst/doc/wild_animals.html | 803 +++++++------------ copula-1.1-1/copula/src/ecIndepTest.c | 24 copula-1.1-1/copula/src/multIndepTest.c | 16 copula-1.1-1/copula/src/multSerialIndepTest.c | 10 copula-1.1-1/copula/src/serialIndepTest.c | 20 copula-1.1-1/copula/vignettes/AC_Liouville.Rmd | 23 copula-1.1-1/copula/vignettes/HAXC.Rmd | 8 copula-1.1-1/copula/vignettes/dNAC.Rmd | 31 copula-1.1-1/copula/vignettes/empiricial_copulas.Rmd | 33 copula-1.1-1/copula/vignettes/qrng.Rmd | 78 - copula-1.1-1/copula/vignettes/style.css | 26 copula-1.1-1/copula/vignettes/wild_animals.Rmd | 26 47 files changed, 2308 insertions(+), 4596 deletions(-)
Title: Generate Citation File Format ('cff') Metadata for R Packages
Description: The Citation File Format version 1.2.0
<doi:10.5281/zenodo.5171937> is a human and machine readable file
format which provides citation metadata for software. This package
provides core utilities to generate and validate this metadata.
Author: Diego Hernangomez [aut, cre, cph]
,
Joao Martins [rev] ,
Scott Chamberlain [rev]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between cffr versions 0.3.0 dated 2022-09-23 and 0.4.0 dated 2022-11-17
DESCRIPTION | 11 MD5 | 75 - NAMESPACE | 1 NEWS.md | 7 R/cff_create.R | 18 R/cff_from_bibtex.R |only R/cff_gha_update.R | 147 +- R/cff_git_hook.R | 187 +-- R/cff_parse_citation.R | 868 ++++++++--------- R/parse_citation.R | 574 +++++------ R/parse_description.R | 39 R/utils-persons.R | 619 ++++++------ R/utils.R | 2 README.md | 159 ++- build/partial.rdb |binary build/vignette.rds |binary data/cran_to_spdx.rda |binary inst/REFERENCES.bib | 411 ++++---- inst/WORDLIST | 25 inst/doc/bibtex_cff.R | 376 +++---- inst/doc/bibtex_cff.Rmd | 907 +++++++++--------- inst/doc/bibtex_cff.html | 633 ++++++------ inst/doc/cffr.html | 152 +-- inst/doc/crosswalk.html | 1404 ++++++++++++++-------------- inst/doc/paper.Rmd | 16 inst/doc/paper.html | 156 +-- inst/examples/example.bib |only inst/yaml/update-citation-cff.yaml | 116 +- man/cff_extract_to_bibtex.Rd | 1 man/cff_from_bibtex.Rd |only man/cff_to_bibtex.Rd | 1 man/encoded_utf_to_latex.Rd | 1 man/write_bib.Rd | 1 tests/testthat/_snaps/cff_from_bibtex.md |only tests/testthat/_snaps/parse_dependencies.md |only tests/testthat/test-assertions.R | 133 +- tests/testthat/test-cff_from_bibtex.R |only tests/testthat/test-cff_parse_citation.R | 2 tests/testthat/test-parse_dependencies.R |only vignettes/REFERENCES.bib | 411 ++++---- vignettes/bibtex_cff.Rmd | 907 +++++++++--------- vignettes/paper.Rmd | 16 42 files changed, 4343 insertions(+), 4033 deletions(-)
Title: Record 'HTTP' Calls to Disk
Description: Record test suite 'HTTP' requests and replays them during
future runs. A port of the Ruby gem of the same name
(<https://github.com/vcr/vcr/>). Works by hooking into the 'webmockr'
R package for matching 'HTTP' requests by various rules ('HTTP' method,
'URL', query parameters, headers, body, etc.), and then caching
real 'HTTP' responses on disk in 'cassettes'. Subsequent 'HTTP' requests
matching any previous requests in the same 'cassette' use a cached
'HTTP' response.
Author: Scott Chamberlain [aut, cre] ,
Aaron Wolen [aut] ,
Maelle Salmon [aut] ,
Daniel Possenriede [aut] ,
rOpenSci [fnd]
Maintainer: Scott Chamberlain <sckott@protonmail.com>
Diff between vcr versions 1.1.0 dated 2022-11-04 and 1.2.0 dated 2022-11-17
vcr-1.1.0/vcr/R/cpp11.R |only vcr-1.1.0/vcr/src |only vcr-1.2.0/vcr/DESCRIPTION | 21 +-- vcr-1.2.0/vcr/MD5 | 70 +++++----- vcr-1.2.0/vcr/NAMESPACE | 1 vcr-1.2.0/vcr/NEWS.md | 29 +++- vcr-1.2.0/vcr/R/cassette_class.R | 2 vcr-1.2.0/vcr/R/http_interaction_list.R | 3 vcr-1.2.0/vcr/R/request_class.R | 24 ++- vcr-1.2.0/vcr/R/response_class.R | 6 vcr-1.2.0/vcr/R/serializer.R | 17 +- vcr-1.2.0/vcr/R/serializers-json.R | 6 vcr-1.2.0/vcr/R/serializers-yaml.R | 6 vcr-1.2.0/vcr/R/split_string.R |only vcr-1.2.0/vcr/R/vcr-package.R | 3 vcr-1.2.0/vcr/R/vcr_setup.R | 15 +- vcr-1.2.0/vcr/R/write.R | 2 vcr-1.2.0/vcr/inst/doc/configuration.html | 4 vcr-1.2.0/vcr/inst/doc/debugging.html | 4 vcr-1.2.0/vcr/inst/doc/design.html | 2 vcr-1.2.0/vcr/inst/doc/lightswitch.html | 4 vcr-1.2.0/vcr/inst/doc/record-modes.html | 4 vcr-1.2.0/vcr/inst/doc/request_matching.html | 4 vcr-1.2.0/vcr/inst/doc/vcr.html | 14 +- vcr-1.2.0/vcr/inst/doc/write-to-disk.html | 10 - vcr-1.2.0/vcr/man/JSON.Rd | 10 + vcr-1.2.0/vcr/man/YAML.Rd | 10 + vcr-1.2.0/vcr/man/check_cassette_names.Rd | 15 +- vcr-1.2.0/vcr/man/insert_cassette.Rd | 15 +- vcr-1.2.0/vcr/man/rmdhunks/cassette-names.Rmd | 12 - vcr-1.2.0/vcr/man/rmdhunks/setup.Rmd | 8 - vcr-1.2.0/vcr/man/rmdhunks/vcr-design.Rmd | 2 vcr-1.2.0/vcr/man/str_splitter.Rd |only vcr-1.2.0/vcr/man/vcr.Rd | 2 vcr-1.2.0/vcr/tests/testthat/test-issues.R |only vcr-1.2.0/vcr/tests/testthat/test-use_vcr.R | 4 vcr-1.2.0/vcr/tests/testthat/test-utils.R | 17 ++ vcr-1.2.0/vcr/tests/testthat/test-write_disk_path_package_context.R | 2 38 files changed, 202 insertions(+), 146 deletions(-)
Title: TV Show Themes and Color Palettes for 'ggplot2' Graphics
Description: Contains various 'ggplot2' themes and color palettes based on TV shows
such as 'Game of Thrones', 'Brooklyn Nine-Nine', 'Avatar: The Last Airbender',
'Spongebob Squarepants', and more.
Author: Ryo Nakagawara [aut, cre]
Maintainer: Ryo Nakagawara <ryonakagawara@gmail.com>
Diff between tvthemes versions 1.3.1 dated 2022-07-19 and 1.3.2 dated 2022-11-17
DESCRIPTION | 8 MD5 | 70 ++++---- NEWS.md | 5 R/theme_brooklyn99.R | 8 R/theme_hilda.R | 18 +- R/theme_parksAndRec.R | 20 +- R/theme_rickandmorty.R | 6 R/theme_simpsons.R | 6 R/theme_spongebob.R | 6 R/theme_thelastairbender.R | 12 - README.md | 54 +++--- inst/doc/examples.html | 13 + inst/doc/fonts-and-colors.html | 13 + inst/doc/tvthemes-1_0_0.html | 13 + man/attackOnTitan_pal.Rd | 221 +++++++++++++------------ man/avatarTLA_pal.Rd | 227 +++++++++++++------------- man/avatar_pal.Rd | 265 +++++++++++++++---------------- man/bigHero6_pal.Rd | 219 ++++++++++++------------- man/brooklyn99_pal.Rd | 281 ++++++++++++++++----------------- man/gravityFalls_pal.Rd | 219 ++++++++++++------------- man/hilda_pal.Rd | 243 ++++++++++++++-------------- man/kimPossible_pal.Rd | 219 ++++++++++++------------- man/parksAndRec_pal.Rd | 219 ++++++++++++------------- man/rickAndMorty_pal.Rd | 219 ++++++++++++------------- man/simpsons_pal.Rd | 219 ++++++++++++------------- man/spongeBob_pal.Rd | 219 ++++++++++++------------- man/stevenUniverse_pal.Rd | 265 +++++++++++++++---------------- man/westeros_pal.Rd | 277 ++++++++++++++++---------------- tests/testthat/test-brooklyn99.R | 2 tests/testthat/test-fonts.R | 1 tests/testthat/test-hilda.R | 6 tests/testthat/test-parksandrec.R | 10 - tests/testthat/test-rickandmorty.R | 2 tests/testthat/test-simpsons.R | 2 tests/testthat/test-spongebob.R | 2 tests/testthat/test-thelastairbender.R | 108 ++---------- 36 files changed, 1834 insertions(+), 1863 deletions(-)
Title: Custom Inputs Widgets for Shiny
Description: Collection of custom input controls and user interface components for 'Shiny' applications.
Give your applications a unique and colorful style !
Author: Victor Perrier [aut, cre, cph],
Fanny Meyer [aut],
David Granjon [aut],
Ian Fellows [ctb] ,
Wil Davis [ctb] ,
Spencer Matthews [ctb] ,
JavaScript and CSS libraries authors [ctb, cph]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between shinyWidgets versions 0.7.4 dated 2022-10-05 and 0.7.5 dated 2022-11-17
DESCRIPTION | 6 MD5 | 92 NEWS.md | 18 R/bootstrap-utils.R | 264 +- R/input-airDatepicker.R | 6 R/input-awesomecheckbox.R | 6 R/input-awesomeradio.R | 512 ++-- R/input-checkboxgroupbuttons.R | 504 ++-- R/input-icon.R | 4 R/input-knob.R | 438 +-- R/input-multi.R | 14 R/input-numericRange.R | 280 +- R/input-pretty.R | 1472 ++++++------- R/input-radiogroupbuttons.R | 540 ++-- R/input-spectrum.R | 344 +-- R/input-switch.R | 682 +++--- R/progressBars.R | 400 +-- R/utils.R | 8 R/virtual-select.R | 524 ++-- README.md | 4 inst/assets/buttons-group/checkboxGroupButtons-bindings.js | 340 +-- inst/assets/buttons-group/checkboxGroupButtons.css | 114 - inst/assets/buttons-group/radioGroupButtons-bindings.js | 290 +- inst/assets/buttons-group/radioGroupButtons.css | 116 - inst/assets/input-icon/numeric-icon-bindings.js | 286 +- inst/assets/input-icon/text-icon-bindings.js | 150 - inst/assets/numericRange/js/numericRange-bindings.js | 124 - inst/assets/shinyWidgets.min.css | 2 inst/assets/sweetalert2/sweetalert-bindings.js | 232 +- inst/assets/utils.js | 32 inst/examples/checkboxGroupButtons/server.R | 98 inst/examples/radioGroupButtons/server.R | 98 inst/examples/shinyWidgets/server.R | 4 inst/examples/shinyWidgets/ui.R | 2 inst/packer/air-datepicker.js | 2 inst/packer/multi.js | 2 inst/packer/multi.js.LICENSE.txt | 2 inst/packer/tree.js | 2 inst/packer/virtual-select.js | 2 inst/packer/virtual-select.js.LICENSE.txt | 2 man/airDatepicker.Rd | 4 man/treeInput.Rd | 48 man/updateNumericInputIcon.Rd | 2 man/updateTextInputIcon.Rd | 2 man/virtualSelectInput.Rd | 2 tests/testthat/test-updateCheckboxGroupButtons.R | 90 tests/testthat/test-updateRadioGroupButtons.R | 90 47 files changed, 4162 insertions(+), 4094 deletions(-)
Title: R and C++ Interfaces to 'spdlog' C++ Header Library for Logging
Description: The mature and widely-used C++ logging library 'spdlog' by Gabi Melman provides
many desirable features. This package bundles these header files for easy use by R packages
from both their R and C++ code. More explicit use via 'LinkingTo:' is also supported.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppSpdlog versions 0.0.9 dated 2022-11-04 and 0.0.10 dated 2022-11-17
ChangeLog | 22 ++++++++++++++ DESCRIPTION | 8 ++--- MD5 | 24 ++++++++------- R/RcppExports.R | 20 +++++++++++++ README.md | 5 ++- build/partial.rdb |binary inst/NEWS.Rd | 9 +++++ inst/doc/introduction.html | 28 ++++++++++++------ inst/doc/introduction.md | 69 +++++++++++++++++++++++++++++++-------------- inst/include/spdl.h | 30 ++++++++++++++++++- man/formatter.Rd |only src/RcppExports.cpp | 13 ++++++++ src/formatter.cpp |only vignettes/introduction.md | 69 +++++++++++++++++++++++++++++++-------------- 14 files changed, 229 insertions(+), 68 deletions(-)
Title: Composable Preprocessing Operators and Pipelines for Machine
Learning
Description: Toolset that enriches 'mlr' with a diverse set of preprocessing
operators. Composable Preprocessing Operators ("CPO"s) are first-class
R objects that can be applied to data.frames and 'mlr' "Task"s to modify
data, can be attached to 'mlr' "Learner"s to add preprocessing to machine
learning algorithms, and can be composed to form preprocessing pipelines.
Author: Martin Binder [aut, cre],
Bernd Bischl [ctb],
Michel Lang [ctb],
Lars Kotthoff [ctb]
Maintainer: Martin Binder <developer.mb706@doublecaret.com>
Diff between mlrCPO versions 0.3.7-5 dated 2022-10-18 and 0.3.7-6 dated 2022-11-17
mlrCPO-0.3.7-5/mlrCPO/inst/doc/afaff |only mlrCPO-0.3.7-6/mlrCPO/DESCRIPTION | 14 ++--- mlrCPO-0.3.7-6/mlrCPO/MD5 | 25 ++++------ mlrCPO-0.3.7-6/mlrCPO/NEWS | 3 + mlrCPO-0.3.7-6/mlrCPO/R/CPO_meta.R | 2 mlrCPO-0.3.7-6/mlrCPO/R/listCPO.R | 2 mlrCPO-0.3.7-6/mlrCPO/inst/doc/a_1_getting_started.html | 19 +++++-- mlrCPO-0.3.7-6/mlrCPO/inst/doc/a_2_mlrCPO_core.html | 17 ++++-- mlrCPO-0.3.7-6/mlrCPO/inst/doc/a_3_all_CPOs.html | 17 ++++-- mlrCPO-0.3.7-6/mlrCPO/inst/doc/a_4_custom_CPOs.html | 19 +++++-- mlrCPO-0.3.7-6/mlrCPO/inst/doc/z_1_getting_started_terse.html | 17 ++++-- mlrCPO-0.3.7-6/mlrCPO/inst/doc/z_2_mlrCPO_core_terse.html | 17 ++++-- mlrCPO-0.3.7-6/mlrCPO/inst/doc/z_3_all_CPOs_terse.html | 17 ++++-- mlrCPO-0.3.7-6/mlrCPO/inst/doc/z_4_custom_CPOs_terse.html | 17 ++++-- 14 files changed, 123 insertions(+), 63 deletions(-)
Title: Dependencies for the 'jamovi' Framework
Description: A framework for creating rich interactive analyses for the jamovi
platform (see <https://www.jamovi.org> for more information).
Author: Jonathon Love
Maintainer: Jonathon Love <jon@thon.cc>
Diff between jmvcore versions 2.3.12 dated 2022-05-31 and 2.3.19 dated 2022-11-17
DESCRIPTION | 8 ++-- MD5 | 6 +-- R/i18n.R | 111 +++++++++++++++++++++++++++++------------------------------- R/image.R | 2 - 4 files changed, 61 insertions(+), 66 deletions(-)
Title: Highest (Posterior) Density Intervals
Description: A generic function and a set of methods to calculate highest density intervals for a variety of classes of objects which can specify a probability density distribution, including MCMC output, fitted density objects, and functions.
Author: Ngumbang Juat [cre],
Mike Meredith [aut],
John Kruschke [aut]
Maintainer: Ngumbang Juat <ngumbangjuat@hotmail.com>
Diff between HDInterval versions 0.2.2 dated 2020-05-23 and 0.2.4 dated 2022-11-17
DESCRIPTION | 17 +++++++++++------ MD5 | 12 ++++++------ NEWS | 14 +++++++++++++- R/checkCredMass.R | 4 +++- R/hdi_function.R | 3 ++- inst/tests/testthat/test-hdi.R | 2 +- man/hdi.Rd | 21 ++++++++++----------- 7 files changed, 46 insertions(+), 27 deletions(-)
Title: Group Sequential Design for Historical Control Trial with
Survival Outcome
Description: It provides functions to design historical controlled trials with survival outcome by group sequential method. The options for interim look boundaries are efficacy only, efficacy & futility or futility only. It also provides the function to monitor the trial for any unplanned look. The package is based on Jianrong Wu, Xiaoping Xiong (2016) <doi:10.1002/pst.1756> and Jianrong Wu, Yimei Li (2020) <doi:10.1080/10543406.2019.1684305>.
Author: Tushar Patni [aut, cre],
Yimei Li [aut],
Jianrong Wu [aut],
Arzu Onar-Thomas [aut]
Maintainer: Tushar Patni <patni006@umn.edu>
Diff between HCTDesign versions 0.7.1 dated 2022-03-10 and 0.7.2 dated 2022-11-17
DESCRIPTION | 13 +++-- MD5 | 20 ++++---- NAMESPACE | 2 R/HCT.R | 93 +++++++++++++++++++++++++++------------- R/alpha.R | 117 +++++++++++++++++++++++++++++++++++---------------- R/beta.R | 97 +++++++++++++++++++++++++++++------------- R/sf.R |only build/partial.rdb |binary man/EffDesign.Rd | 22 +++++++-- man/FutDesign.Rd | 20 +++++++- man/HCTSurvDesign.Rd | 20 +++++++- man/sf.Rd |only 12 files changed, 283 insertions(+), 121 deletions(-)
Title: Graphical Independence Networks
Description: Probability propagation in graphical independence networks, also
known as Bayesian networks or probabilistic expert systems. Documentation
of the package is provided in vignettes included in the package and in
the paper by Højsgaard (2012, <doi:10.18637/jss.v046.i10>).
See 'citation("gRain")' for details.
Author: Soeren Hoejsgaard <sorenh@math.aau.dk>
Maintainer: Soeren Hoejsgaard <sorenh@math.aau.dk>
Diff between gRain versions 1.3.11 dated 2022-09-04 and 1.3.12 dated 2022-11-17
gRain-1.3.11/gRain/R/data.R |only gRain-1.3.11/gRain/R/grain-recent.R |only gRain-1.3.11/gRain/R/grain-setcpt.R |only gRain-1.3.11/gRain/R/potential_list.R |only gRain-1.3.11/gRain/R/summary.R |only gRain-1.3.11/gRain/man/cpt-update.Rd |only gRain-1.3.11/gRain/man/grain_jevidence.Rd |only gRain-1.3.12/gRain/DESCRIPTION | 11 gRain-1.3.12/gRain/MD5 | 102 ++- gRain-1.3.12/gRain/NAMESPACE | 31 - gRain-1.3.12/gRain/NEWS | 11 gRain-1.3.12/gRain/R/NAMESPACE.R | 2 gRain-1.3.12/gRain/R/cpt-pot-extract.R | 10 gRain-1.3.12/gRain/R/cpt-pot-gather.R | 107 +-- gRain-1.3.12/gRain/R/cpt.R |only gRain-1.3.12/gRain/R/evidence-joint.R | 68 +- gRain-1.3.12/gRain/R/evidence-objects.R | 176 ++---- gRain-1.3.12/gRain/R/evidence.R | 253 +++++--- gRain-1.3.12/gRain/R/finding.R | 14 gRain-1.3.12/gRain/R/grain-compile.R | 260 ++++++--- gRain-1.3.12/gRain/R/grain-main.R | 122 +++- gRain-1.3.12/gRain/R/grain-utilities.R | 14 gRain-1.3.12/gRain/R/grain_data.R |only gRain-1.3.12/gRain/R/loadSaveHuginNet.R | 538 +++++++++--------- gRain-1.3.12/gRain/R/predict.R | 6 gRain-1.3.12/gRain/R/propagate.R | 202 ++++--- gRain-1.3.12/gRain/R/querygrain.R | 34 - gRain-1.3.12/gRain/R/repeat_pattern.R | 135 ++-- gRain-1.3.12/gRain/R/replace_cpt.R |only gRain-1.3.12/gRain/build/vignette.rds |binary gRain-1.3.12/gRain/inst/doc/grain-intro.R | 306 ++++++---- gRain-1.3.12/gRain/inst/doc/grain-intro.Rnw | 712 ++++++++++++++++--------- gRain-1.3.12/gRain/inst/doc/grain-intro.pdf |binary gRain-1.3.12/gRain/man/chest.Rd | 2 gRain-1.3.12/gRain/man/components_extract.Rd | 2 gRain-1.3.12/gRain/man/components_gather.Rd | 5 gRain-1.3.12/gRain/man/cpt.Rd |only gRain-1.3.12/gRain/man/evidence_object.Rd | 75 +- gRain-1.3.12/gRain/man/finding.Rd | 14 gRain-1.3.12/gRain/man/get_superset_list.Rd |only gRain-1.3.12/gRain/man/grain-main.Rd | 37 - gRain-1.3.12/gRain/man/grain_compile.Rd | 6 gRain-1.3.12/gRain/man/grain_evidence.Rd | 14 gRain-1.3.12/gRain/man/grain_joint_evidence.Rd |only gRain-1.3.12/gRain/man/grain_propagate.Rd | 33 - gRain-1.3.12/gRain/man/grass.Rd | 2 gRain-1.3.12/gRain/man/load-save-hugin.Rd | 12 gRain-1.3.12/gRain/man/querygrain.Rd | 4 gRain-1.3.12/gRain/man/repeatPattern.Rd | 62 +- gRain-1.3.12/gRain/man/replace-cpt.Rd |only gRain-1.3.12/gRain/man/simplify_query.Rd |only gRain-1.3.12/gRain/vignettes/figures |only gRain-1.3.12/gRain/vignettes/grain-intro.Rnw | 712 ++++++++++++++++--------- 53 files changed, 2481 insertions(+), 1613 deletions(-)
Title: Methods for Handling and Analyzing Time Series of Satellite
Images
Description: Provides functions and methods for: splitting large raster objects
into smaller chunks, transferring images from a binary format into raster
layers, transferring raster layers into an 'RData' file, calculating the
maximum gap (amount of consecutive missing values) of a numeric vector,
and fitting harmonic regression models to periodic time series. The homoscedastic
harmonic regression model is based on G. Roerink, M. Menenti and W. Verhoef (2000) <doi:10.1080/014311600209814>.
Author: Inder Tecuapetla-Gomez [aut, cre]
Maintainer: Inder Tecuapetla-Gomez
<itecuapetla@conabio.gob.mx>
Diff between geoTS versions 0.1.3 dated 2020-03-06 and 0.1.8 dated 2022-11-17
DESCRIPTION | 22 -- MD5 | 45 ++-- NAMESPACE | 7 R/auxFunctions.R | 351 +++++++++++++++++---------------- R/data.R |only R/extdata.R |only R/geoTS-package.R | 38 ++- R/haRmonics.R | 313 +++++++++++++++-------------- R/hetervar.R |only R/matrixToRaster.R | 54 ++++- R/maxLagMissVal.R | 4 R/raster_intersect_sp.R |only R/split_replace.R | 4 R/transfer_raster_RData.R | 122 ++++++----- data |only inst/docs |only inst/extdata/MOD13Q1_NDVI_Mohinora.tif |only man/MOD13Q1_NDVI_2000129_009.Rd |only man/MOD13Q1_NDVI_Mohinora.Rd |only man/geoTS-package.Rd | 38 ++- man/haRmonics.Rd | 50 +++- man/hetervar.Rd |only man/master.Rd |only man/matrixToRaster.Rd | 25 +- man/maxLagMissVal.Rd | 4 man/raster_intersect_sp.Rd |only man/shp_mohinora.Rd |only man/split_replace.Rd | 26 +- man/transfer_bin_raster.Rd | 15 + man/transfer_raster_RData.Rd | 35 ++- 30 files changed, 684 insertions(+), 469 deletions(-)
Title: Dynamic Simulation and Testing for Single-Equation ARDL Models
Description: While autoregressive distributed lag (ARDL) models allow for extremely flexible dynamics, interpreting substantive significance of complex lag structures remains difficult. This package is designed to assist users in dynamically simulating and plotting the results of various ARDL models. It also contains post-estimation diagnostics, including a test for cointegration when estimating the error-correction variant of the autoregressive distributed lag model (Pesaran, Shin, and Smith 2001 <doi:10.1002/jae.616>).
Author: Soren Jordan [aut, cre, cph],
Andrew Q. Philips [aut]
Maintainer: Soren Jordan <sorenjordanpols@gmail.com>
Diff between dynamac versions 0.1.11 dated 2020-04-03 and 0.1.12 dated 2022-11-17
DESCRIPTION | 8 MD5 | 37 NAMESPACE | 2 R/dynamac.R | 227 --- build/partial.rdb |only build/vignette.rds |binary inst/doc/dynamac-vignette.R | 56 inst/doc/dynamac-vignette.Rmd | 2 inst/doc/dynamac-vignette.html | 2893 +++++++++++++++++++++++------------------ inst/dynamac-manual.pdf |binary man/dynamac-deprecated.Rd | 48 man/dynardl.Rd | 34 man/dynardl.all.plots.Rd | 19 man/dynardl.auto.correlated.Rd | 9 man/dynardl.simulation.plot.Rd | 23 man/france.data.Rd | 6 man/ineq.Rd | 8 man/pssbounds.Rd | 14 man/supreme.sup.Rd | 8 vignettes/dynamac-vignette.Rmd | 2 20 files changed, 1859 insertions(+), 1537 deletions(-)
Title: Quick and Dirty Estimates for Wildlife Populations
Description: Provides simple, fast functions for maximum likelihood and Bayesian estimates of wildlife population parameters, suitable for use with simulated data or bootstraps. Early versions were indeed quick and dirty, but optional error-checking routines and meaningful error messages have been added. Includes single and multi-season occupancy, closed capture population estimation, survival, species richness and distance measures.
Author: Ngumbang Juat [cre],
Mike Meredith [aut],
Jason Bryer [ctb] ,
John Kruschke [ctb],
Brian Neelon [ctb] ,
Michael Schaub [ctb] ,
R Core Team [ctb]
Maintainer: Ngumbang Juat <ngumbangjuat@hotmail.com>
Diff between wiqid versions 0.3.1 dated 2022-06-20 and 0.3.3 dated 2022-11-17
DESCRIPTION | 16 +++++++++------- MD5 | 4 ++-- NEWS | 5 ++++- 3 files changed, 15 insertions(+), 10 deletions(-)
Title: Statistical Methods for the Analysis of Case-Control Point Data
Description: Statistical methods for analyzing case-control point data. Methods include the ratio of kernel densities, the difference in K Functions, the spatial scan statistic, and q nearest neighbors of cases.
Author: Joshua French [aut, cre]
Maintainer: Joshua French <joshua.french@ucdenver.edu>
Diff between smacpod versions 2.4.1 dated 2022-04-08 and 2.5 dated 2022-11-17
smacpod-2.4.1/smacpod/NEWS |only smacpod-2.5/smacpod/DESCRIPTION | 12 smacpod-2.5/smacpod/MD5 | 56 +- smacpod-2.5/smacpod/NEWS.md |only smacpod-2.5/smacpod/R/Kdest.R | 17 smacpod-2.5/smacpod/R/arg_check_functions.R | 30 + smacpod-2.5/smacpod/R/kd.R | 23 smacpod-2.5/smacpod/R/kdest-print.R | 2 smacpod-2.5/smacpod/R/logrr.R | 328 ++++++++---- smacpod-2.5/smacpod/R/logrr.test.R | 3 smacpod-2.5/smacpod/R/logrrenv-print.R | 5 smacpod-2.5/smacpod/R/nrenv.R | 75 ++ smacpod-2.5/smacpod/R/plot.kdenv.R | 10 smacpod-2.5/smacpod/R/plot.logrrenv.R | 3 smacpod-2.5/smacpod/R/plot.spscan.R | 2 smacpod-2.5/smacpod/R/spdensity.R | 12 smacpod-2.5/smacpod/build/vignette.rds |binary smacpod-2.5/smacpod/inst/doc/smacpod_demo.Rmd | 4 smacpod-2.5/smacpod/inst/doc/smacpod_demo.html | 644 +++++++++++++++++++------ smacpod-2.5/smacpod/man/kd.Rd | 29 - smacpod-2.5/smacpod/man/kdest.Rd | 40 - smacpod-2.5/smacpod/man/logrr.Rd | 207 ++++---- smacpod-2.5/smacpod/man/logrr.test.Rd | 3 smacpod-2.5/smacpod/man/plot.kdenv.Rd | 4 smacpod-2.5/smacpod/man/plot.logrrenv.Rd | 3 smacpod-2.5/smacpod/man/print.kdenv.Rd | 2 smacpod-2.5/smacpod/man/qnn.test.Rd | 12 smacpod-2.5/smacpod/man/spdensity.Rd | 8 smacpod-2.5/smacpod/man/spscan.test.Rd | 12 smacpod-2.5/smacpod/vignettes/smacpod_demo.Rmd | 4 30 files changed, 1075 insertions(+), 475 deletions(-)
Title: Functions to Store, Manipulate and Display Markov Chain Monte
Carlo (MCMC) Output
Description: Implements a class ('mcmcOutput') for efficiently storing and handling Markov chain Monte Carlo (MCMC) output, intended as an aid for those writing customized MCMC samplers. A range of constructor methods are provided covering common output formats. Functions are provided to generate summary and diagnostic statistics and to display histograms or density plots of posterior distributions, for the entire output, or subsets of draws, nodes, or parameters.
Author: Ngumbang Juat [cre],
Mike Meredith [aut],
John Kruschke [ctb]
Maintainer: Ngumbang Juat <ngumbangjuat@hotmail.com>
Diff between mcmcOutput versions 0.1.1 dated 2020-06-04 and 0.1.3 dated 2022-11-17
DESCRIPTION | 17 +++++++++-------- MD5 | 16 ++++++++-------- NEWS | 6 ++++++ R/method_plot.R | 2 +- R/plot_crosscorrPlot.R | 2 +- R/plot_diagplot.R | 2 +- R/plot_discrepancyPlot.R | 12 ++++++------ R/plot_stuff.R | 2 +- R/postPriorOverlap.R | 6 +++--- 9 files changed, 36 insertions(+), 29 deletions(-)
Title: Experimental Statistics and Graphics for Agricultural Sciences
Description: Performs the analysis of completely randomized experimental designs (CRD), randomized blocks (RBD) and Latin square (LSD), experiments in double and triple factorial scheme (in CRD and RBD), experiments in subdivided plot scheme (in CRD and RBD), subdivided and joint analysis of experiments in CRD and RBD, linear regression analysis, test for two samples. The package performs analysis of variance, ANOVA assumptions and multiple comparison test of means or regression, according to Pimentel-Gomes (2009, ISBN: 978-85-7133-055-9), nonparametric test (Conover, 1999, ISBN: 0471160687), test for two samples, joint analysis of experiments according to Ferreira (2018, ISBN: 978-85-7269-566-4) and generalized linear model (glm) for binomial and Poisson family in CRD and RBD (Carvalho, FJ (2019), <doi:10.14393/ufu.te.2019.1244>). It can also be used to obtain descriptive measures and graphics, in addition to correlations and creative graphics used in agricultural sciences (Agronomy, Zootech [...truncated...]
Author: Gabriel Danilo Shimizu [aut, cre]
,
Rodrigo Yudi Palhaci Marubayashi [aut, ctb]
,
Leandro Simoes Azeredo Goncalves [aut, ctb]
Maintainer: Gabriel Danilo Shimizu <shimizu@uel.br>
Diff between AgroR versions 1.3.1 dated 2022-08-29 and 1.3.2 dated 2022-11-17
DESCRIPTION | 18 ++-- MD5 | 131 +++++++++++++++--------------- NAMESPACE | 3 NEWS.md | 8 + R/FAT2DBC_function.R | 42 +++++++-- R/FAT2DBCad_function.R | 52 +++++++----- R/FAT2DIC_function.R | 27 ++++-- R/FAT2DICad_function.R | 52 +++++++----- R/FAT3DBC_function.R | 40 +++++---- R/FAT3DBCad_function.R | 40 +++++---- R/FAT3DIC_function.R | 43 +++++---- R/FAT3DICad_function.R | 44 ++++++---- R/PSUBDBC_function.R | 7 + R/PSUBDIC_function.R | 12 +- R/PSUBFAT2DBC_function.R | 6 + R/PSUBSUB_function.R | 5 + R/barfacets_function.R | 100 +++++++++++++++-------- R/bargraph2_function.R | 10 +- R/bargraph_function.R | 9 +- R/conjdbc_function.R | 182 +++++++++++++++++++++++++++++++++++++----- R/conjdic_function.R | 150 +++++++++++++++++++++++++++++++--- R/conjfatdbc_function.R | 12 +- R/dbc_ad.R | 8 - R/dbc_function.R | 57 +++++++++---- R/dbct_function.R | 1 R/dic_ad.R | 14 +-- R/dic_function.R | 50 +++++++---- R/dict_function.R | 3 R/dql_function.R | 28 +++++- R/eucalyptus_data.R |only R/jointcluster.R |only R/polynomial2_function.R | 2 R/polynomial2color_function.R | 2 R/polynomial_function.R | 4 R/quantfat2desd_function.R |only R/seggraph2_function.R | 2 R/seggraph_function.R | 8 + R/sk_graph_function.R | 13 +-- R/summarise_function.R | 6 - R/tabledesc_function.R | 2 README.md | 42 ++++++--- data/eucalyptus.RData |only man/DBC.Rd | 8 + man/DBCT.Rd | 1 man/DIC.Rd | 8 + man/DICT.Rd | 3 man/DQL.Rd | 8 + man/FAT2DBC.Rd | 6 + man/FAT2DBC.ad.Rd | 6 + man/FAT2DIC.Rd | 6 + man/FAT2DIC.ad.Rd | 6 + man/FAT3DBC.Rd | 3 man/FAT3DBC.ad.Rd | 3 man/FAT3DIC.Rd | 3 man/FAT3DIC.ad.Rd | 3 man/PSUBDBC.Rd | 3 man/PSUBDIC.Rd | 3 man/bar_graph2.Rd | 4 man/barfacet.Rd | 5 - man/conjdbc.Rd | 15 +++ man/conjdic.Rd | 5 + man/conjfat2dbc.Rd | 5 - man/dic.ad.Rd | 6 - man/eucalyptus.Rd |only man/jointcluster.Rd |only man/quant.fat2.desd.Rd |only man/seg_graph.Rd | 2 man/sk_graph.Rd | 6 - man/summarise_anova.Rd | 3 man/tabledesc.Rd | 2 70 files changed, 965 insertions(+), 393 deletions(-)
Title: Robust Land-Use Optimization
Description: Robust multi-criteria land-allocation optimization that explicitly accounts for the uncertainty of the indicators in the objective function. Solves the problem of allocating scarce land to various land-use options with regard to multiple, coequal indicators. The method aims to find the land allocation that represents the indicator composition with the best possible trade-off under uncertainty. optimLanduse includes the actual optimization procedure as described by Knoke et al. (2016) <doi:10.1038/ncomms11877> and the post-hoc calculation of the portfolio performance as presented by Gosling et al. (2020) <doi:10.1016/j.jenvman.2020.110248>.
Author: Kai Husmann [aut, cre] ,
Volker von Groß [aut] ,
Jasper Fuchs [aut] ,
Kai Boedeker [aut] ,
Goettingen University - Forest Economics and Sustainable Land-use
Planning [cph, fnd],
TUM School of Life Sciences - Forest Management [cph, fnd]
Maintainer: Kai Husmann <kai.husmann@uni-goettingen.de>
Diff between optimLanduse versions 1.1.0 dated 2022-08-17 and 1.1.2 dated 2022-11-17
DESCRIPTION | 6 MD5 | 21 +- NEWS.md | 4 R/calcPerformance.R | 19 +- R/initScenario.R | 10 - R/solveScenario.R | 6 README.md | 345 ++++++++++++++++++++++++------------------------- build/partial.rdb |binary inst/CITATION |only man/calcPerformance.Rd | 19 +- man/initScenario.Rd | 10 - man/solveScenario.Rd | 6 12 files changed, 219 insertions(+), 227 deletions(-)
Title: Tools for Handling Extraction of Features from Time Series
Description: Consolidates and calculates different sets of time-series features from multiple
'R' and 'Python' packages including 'Rcatch22' Henderson, T. (2021) <doi:10.5281/zenodo.5546815>,
'feasts' O'Hara-Wild, M., Hyndman, R., and Wang, E. (2021) <https://CRAN.R-project.org/package=feasts>,
'tsfeatures' Hyndman, R., Kang, Y., Montero-Manso, P., Talagala, T., Wang, E., Yang, Y., and O'Hara-Wild, M. (2020)
<https://CRAN.R-project.org/package=tsfeatures>, 'tsfresh' Christ, M., Braun, N., Neuffer, J.,
and Kempa-Liehr A.W. (2018) <doi:10.1016/j.neucom.2018.03.067>, 'TSFEL' Barandas, M., et al. (2020)
<doi:10.1016/j.softx.2020.100456>, and 'Kats' Facebook Infrastructure Data Science (2021)
<https://facebookresearch.github.io/Kats/>. Provides a standardised workflow from feature calculation to
feature processing, machine learning classification procedures, and the production of statistical graphics.
Author: Trent Henderson [cre, aut],
Annie Bryant [ctb]
Maintainer: Trent Henderson <then6675@uni.sydney.edu.au>
Diff between theft versions 0.3.9.6 dated 2022-05-31 and 0.4.1.1 dated 2022-11-17
DESCRIPTION | 13 LICENSE | 2 MD5 | 135 - NAMESPACE | 1 R/calculate_features.R | 982 ++++----- R/check_vector_quality.R | 34 R/compute_top_features.R | 1164 +++++------ R/data.R | 80 R/fit_multi_feature_classifier.R | 2156 ++++++++++----------- R/fit_single_feature_classifier.R | 1810 ++++++++--------- R/init_theft.R | 27 R/normalise_feature_frame.R | 440 ++-- R/normalise_feature_vector.R | 284 +- R/plot_all_features.R | 452 ++-- R/plot_feature_correlations.R | 456 ++-- R/plot_feature_matrix.R | 457 ++-- R/plot_low_dimension.R | 711 +++--- R/plot_quality_matrix.R | 218 +- R/plot_ts_correlations.R | 395 +-- R/process_hctsa_file.R | 140 - R/rescalers.R | 178 - R/theft.R | 53 README.md | 215 +- build/vignette.rds |binary data/demo_multi_outputs.rda |only data/demo_outputs.rda |only inst/doc/theft.R | 380 +-- inst/doc/theft.Rmd | 792 +++---- inst/doc/theft.html | 1474 +++++++++----- inst/python/kats_calculator.py | 64 inst/python/tsfel_calculator.py | 44 inst/python/tsfresh_calculator.py | 40 man/calculate_features.Rd | 112 - man/check_vector_quality.Rd | 44 man/compute_top_features.Rd | 210 +- man/demo_multi_outputs.Rd |only man/demo_outputs.Rd |only man/feature_list.Rd | 40 man/fit_multi_feature_classifier.Rd | 168 - man/fit_single_feature_classifier.Rd | 188 - man/init_theft.Rd | 46 man/minmax_scaler.Rd | 48 man/normalise_feature_frame.Rd | 92 man/normalise_feature_vector.Rd | 76 man/normalize_feature_frame.Rd | 92 man/normalize_feature_vector.Rd | 76 man/plot_all_features.Rd | 110 - man/plot_feature_correlations.Rd | 132 - man/plot_feature_matrix.Rd | 110 - man/plot_low_dimension.Rd | 142 - man/plot_quality_matrix.Rd | 67 man/plot_ts_correlations.Rd | 117 - man/process_hctsa_file.Rd | 56 man/robustsigmoid_scaler.Rd | 52 man/sigmoid_scaler.Rd | 52 man/simData.Rd | 44 man/theft.Rd | 18 man/zscore_scaler.Rd | 50 tests/testthat.R | 8 tests/testthat/helper-core_data.R | 22 tests/testthat/test-calculate_features.R | 118 - tests/testthat/test-compute_top_features.R | 292 +- tests/testthat/test-fit_multi_feature_classifier.R | 114 - tests/testthat/test-normalise_feature_frame.R | 32 tests/testthat/test-plot_all_features.R | 59 tests/testthat/test-plot_feature_correlations.R | 26 tests/testthat/test-plot_low_dimension.R | 76 tests/testthat/test-plot_ts_correlations.R | 26 tests/testthat/test-process_hctsa_file.R | 18 vignettes/theft.Rmd | 792 +++---- vignettes/workflow-graphic2.png |only 71 files changed, 8734 insertions(+), 8188 deletions(-)
Title: Spatial Interpolation Based on Spatial Stratified Heterogeneity
Description: Spatial interpolation is a common practice in social and environmental science. This package enables the implementation of SSH-based spatial interpolation proposed by Wang et al. (2013) <doi:10.1068/a44710>. It provides functions to (1) evaluate stratification schemes, (2) interpolate sampling data over user-defined reporting units, (3) assess interpolation uncertainties, and (4) evaluate overall accuracy using the k-fold cross-validation estimate.
Author: Yue Lin [aut, cre],
Chengdong Xu [aut, ctb],
Jinfeng Wang [aut, ctb]
Maintainer: Yue Lin <lin.3326@osu.edu>
Diff between sandwichr versions 1.0.1 dated 2022-02-08 and 1.0.2 dated 2022-11-17
sandwichr-1.0.1/sandwichr/vignettes/figs |only sandwichr-1.0.2/sandwichr/DESCRIPTION | 12 sandwichr-1.0.2/sandwichr/MD5 | 23 sandwichr-1.0.2/sandwichr/NEWS.md | 5 sandwichr-1.0.2/sandwichr/R/sandwich.cv.r | 7 sandwichr-1.0.2/sandwichr/README.md | 17 sandwichr-1.0.2/sandwichr/build/vignette.rds |binary sandwichr-1.0.2/sandwichr/inst/doc/sandwichr.R.tutorial.R | 29 sandwichr-1.0.2/sandwichr/inst/doc/sandwichr.R.tutorial.Rmd | 48 sandwichr-1.0.2/sandwichr/inst/doc/sandwichr.R.tutorial.html | 617 ++++++++--- sandwichr-1.0.2/sandwichr/vignettes/sandwichr.R.tutorial.Rmd | 48 11 files changed, 626 insertions(+), 180 deletions(-)
Title: Significance Testing of Rank Cross-Correlations under SRD
Description: Significance test of Spearman's Rho or Kendall's Tau
between short-range dependent random variables.
Author: David Lun [aut, cre],
Svenja Fischer [aut],
Alberto Viglione [aut]
Maintainer: David Lun <lun@hydro.tuwien.ac.at>
Diff between corTESTsrd versions 0.9-2 dated 2022-08-14 and 1.0-0 dated 2022-11-17
DESCRIPTION | 8 ++++---- MD5 | 15 ++++++++------- R/corTESTsrd.R | 6 +++--- R/long_run_var_est_kendall_H0.R | 2 +- R/long_run_var_est_spearman_H0.R | 2 +- build |only man/corTESTsrd.Rd | 6 +++--- man/long_run_var_est_kendall_H0.Rd | 2 +- man/long_run_var_est_spearman_H0.Rd | 2 +- 9 files changed, 22 insertions(+), 21 deletions(-)
Title: ROC Analysis in Three-Class Classification Problems for
Clustered Data
Description: Statistical methods for ROC surface analysis in three-class classification problems for clustered data and in presence of covariates. In particular, the package allows to obtain covariate-specific point and interval estimation for:
(i) true class fractions (TCFs) at fixed pairs of thresholds;
(ii) the ROC surface;
(iii) the volume under ROC surface (VUS);
(iv) the optimal pairs of thresholds.
Methods considered in points (i), (ii) and (iv) are proposed and discussed in To et al. (2022) <doi:10.1177/09622802221089029>. Referring to point (iv), three different selection criteria are implemented: Generalized Youden Index (GYI), Closest to Perfection (CtP) and Maximum Volume (MV). Methods considered in point (iii) are proposed and discussed in Xiong et al. (2018) <doi:10.1177/0962280217742539>. Visualization tools are also provided. We refer readers to the articles cited above for all details.
Author: Duc-Khanh To [aut, cre] , with contributions from Gianfranco Adimari and Monica Chiogna
Maintainer: Duc-Khanh To <toduc@stat.unipd.it>
Diff between ClusROC versions 1.0.1 dated 2022-05-25 and 1.0.2 dated 2022-11-17
ClusROC-1.0.1/ClusROC/R/TCFs.R |only ClusROC-1.0.1/ClusROC/R/bootstrap_lme2.R |only ClusROC-1.0.1/ClusROC/R/fit_lme2.R |only ClusROC-1.0.1/ClusROC/R/plot_ROC_surface.R |only ClusROC-1.0.1/ClusROC/R/thresh_3class.R |only ClusROC-1.0.1/ClusROC/R/vus.R |only ClusROC-1.0.1/ClusROC/man/ROCsurface.Rd |only ClusROC-1.0.1/ClusROC/man/TCFs.Rd |only ClusROC-1.0.1/ClusROC/man/VUS.Rd |only ClusROC-1.0.1/ClusROC/man/ci_VUS.Rd |only ClusROC-1.0.1/ClusROC/man/lme2.Rd |only ClusROC-1.0.1/ClusROC/man/optThres3.Rd |only ClusROC-1.0.1/ClusROC/man/plot.lme2.Rd |only ClusROC-1.0.1/ClusROC/man/plot.optThres3.Rd |only ClusROC-1.0.1/ClusROC/man/print.TCFs.Rd |only ClusROC-1.0.1/ClusROC/man/print.VUS.Rd |only ClusROC-1.0.1/ClusROC/man/print.ci_VUS.Rd |only ClusROC-1.0.1/ClusROC/man/print.lme2.Rd |only ClusROC-1.0.1/ClusROC/man/print.optThres3.Rd |only ClusROC-1.0.2/ClusROC/COPYING |only ClusROC-1.0.2/ClusROC/DESCRIPTION | 22 - ClusROC-1.0.2/ClusROC/MD5 | 74 ++-- ClusROC-1.0.2/ClusROC/NAMESPACE | 59 +-- ClusROC-1.0.2/ClusROC/NEWS.md |only ClusROC-1.0.2/ClusROC/R/RcppExports.R |only ClusROC-1.0.2/ClusROC/R/bootstrap_clus_lme.R |only ClusROC-1.0.2/ClusROC/R/clus_lme.R |only ClusROC-1.0.2/ClusROC/R/clus_opt_thresh_3class.R |only ClusROC-1.0.2/ClusROC/R/clus_roc_surface.R |only ClusROC-1.0.2/ClusROC/R/clus_tcfs.R |only ClusROC-1.0.2/ClusROC/R/clus_vus.R |only ClusROC-1.0.2/ClusROC/R/data_EnergyEthiopia.R |only ClusROC-1.0.2/ClusROC/R/data_MouseNeurons.R | 6 ClusROC-1.0.2/ClusROC/R/thresh_3class_CtP.R | 90 ++--- ClusROC-1.0.2/ClusROC/R/thresh_3class_GYI.R | 96 ++--- ClusROC-1.0.2/ClusROC/R/thresh_3class_MV.R | 91 ++--- ClusROC-1.0.2/ClusROC/R/utilities.R | 369 ++++++++++++++++++--- ClusROC-1.0.2/ClusROC/README.md | 29 + ClusROC-1.0.2/ClusROC/build |only ClusROC-1.0.2/ClusROC/data/EnergyEthiopia.rda |only ClusROC-1.0.2/ClusROC/man/ClusROC-package.Rd | 8 ClusROC-1.0.2/ClusROC/man/EnergyEthiopia.Rd |only ClusROC-1.0.2/ClusROC/man/MouseNeurons.Rd | 6 ClusROC-1.0.2/ClusROC/man/ci_clus_vus.Rd |only ClusROC-1.0.2/ClusROC/man/clus_lme.Rd |only ClusROC-1.0.2/ClusROC/man/clus_opt_thres3.Rd |only ClusROC-1.0.2/ClusROC/man/clus_roc_surface.Rd |only ClusROC-1.0.2/ClusROC/man/clus_tcfs.Rd |only ClusROC-1.0.2/ClusROC/man/clus_vus.Rd |only ClusROC-1.0.2/ClusROC/man/plot.clus_lme.Rd |only ClusROC-1.0.2/ClusROC/man/plot.clus_opt_thres3.Rd |only ClusROC-1.0.2/ClusROC/man/print.ci_clus_vus.Rd |only ClusROC-1.0.2/ClusROC/man/print.clus_lme.Rd |only ClusROC-1.0.2/ClusROC/man/print.clus_opt_thres3.Rd |only ClusROC-1.0.2/ClusROC/man/print.clus_tcfs.Rd |only ClusROC-1.0.2/ClusROC/man/print.clus_vus.Rd |only ClusROC-1.0.2/ClusROC/src |only ClusROC-1.0.2/ClusROC/tests |only 58 files changed, 586 insertions(+), 264 deletions(-)
More information about elections.dtree at CRAN
Permanent link
Title: Convert R Graphics to Flash Animations
Description: Using the 'Ming' library
<https://github.com/libming/libming> to create Flash animations.
Users can either use the 'SWF' device swf() to generate 'SWF' file
directly through plotting functions like plot() and lines(),
or convert images of other formats ('SVG', 'PNG', 'JPEG') into 'SWF'.
Author: Yixuan Qiu, Yihui Xie, Cameron Bracken and authors of included
software. See file AUTHORS for details.
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between R2SWF versions 0.9-7 dated 2022-02-11 and 0.9-8 dated 2022-11-17
DESCRIPTION | 8 - MD5 | 96 ++++++++-------- README.md | 196 +++++++++++++++++----------------- inst/NEWS.Rd | 10 + src/init.c | 2 src/libming/actioncompiler/compile.c | 76 ++++++------- src/libming/actioncompiler/compile.h | 18 +-- src/libming/actioncompiler/lex.swf4.c | 102 ++++++++--------- src/libming/actioncompiler/lex.swf5.c | 138 +++++++++++------------ src/libming/blocklist.c | 2 src/libming/blocklist.h | 2 src/libming/blocks/action.c | 42 +++---- src/libming/blocks/block.c | 4 src/libming/blocks/block.h | 8 - src/libming/blocks/button.c | 98 ++++++++--------- src/libming/blocks/fileattrs.c | 18 +-- src/libming/blocks/fileattrs.h | 8 - src/libming/blocks/filter.c | 2 src/libming/blocks/filter.h | 2 src/libming/blocks/font.c | 6 - src/libming/blocks/font.h | 6 - src/libming/blocks/fromswf.c | 40 +++--- src/libming/blocks/gradient.c | 38 +++--- src/libming/blocks/morph.c | 2 src/libming/blocks/output.c | 2 src/libming/blocks/output.h | 6 - src/libming/blocks/scenedata.c | 26 ++-- src/libming/blocks/scenedata.h | 6 - src/libming/blocks/scriptlimits.c | 14 +- src/libming/blocks/scriptlimits.h | 8 - src/libming/blocks/shape.c | 4 src/libming/blocks/shape.h | 8 - src/libming/blocks/sprite.c | 16 +- src/libming/blocks/swf.h | 2 src/libming/blocks/symbolclass.c | 16 +- src/libming/blocks/symbolclass.h | 4 src/libming/blocks/text.c | 24 ++-- src/libming/blocks/text.h | 2 src/libming/blocks/textfield.c | 22 +-- src/libming/blocks/videostream.c | 2 src/libming/displaylist.c | 10 - src/libming/displaylist.h | 16 +- src/libming/font_util.c | 6 - src/libming/font_util.h | 6 - src/libming/gc.c | 8 - src/libming/ming.c | 8 - src/libming/movie.c | 2 src/libming/movieclip.c | 6 - src/swfInit.c | 4 49 files changed, 580 insertions(+), 572 deletions(-)
Title: Client Interface for 'openEO' Servers
Description: Access data and processing functionalities of 'openEO' compliant back-ends in R.
Author: Florian Lahn [aut, cre],
Peter James Zellner [ctb],
Matthias Mohr [ctb]
Maintainer: Florian Lahn <florian.lahn@eftas.com>
Diff between openeo versions 1.2.2 dated 2022-10-17 and 1.3.0 dated 2022-11-17
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openeo-1.3.0/openeo/R/ops.R | 1892 +-- openeo-1.3.0/openeo/R/predefined_processes.R | 167 openeo-1.3.0/openeo/R/print-functions.R | 1306 +- openeo-1.3.0/openeo/R/process_graph_building.R | 2041 +-- openeo-1.3.0/openeo/R/sample_data.R | 414 openeo-1.3.0/openeo/R/server_metadata.R | 536 openeo-1.3.0/openeo/R/services.R | 22 openeo-1.3.0/openeo/R/spatial.R | 304 openeo-1.3.0/openeo/R/udf.R | 340 openeo-1.3.0/openeo/R/user.R | 807 - openeo-1.3.0/openeo/R/user_defined_processes.R | 811 - openeo-1.3.0/openeo/R/utilities.R | 491 openeo-1.3.0/openeo/R/viewer.R | 626 - openeo-1.3.0/openeo/R/zzz.R | 66 openeo-1.3.0/openeo/README.md | 312 openeo-1.3.0/openeo/build/vignette.rds |binary openeo-1.3.0/openeo/inst/doc/openeo-01-getting_started.R |only openeo-1.3.0/openeo/inst/doc/openeo-01-getting_started.Rmd |only openeo-1.3.0/openeo/inst/doc/openeo-01-getting_started.html |only openeo-1.3.0/openeo/inst/doc/openeo-02-sample_data.R |only openeo-1.3.0/openeo/inst/doc/openeo-02-sample_data.Rmd |only 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openeo-1.3.0/openeo/tests/testthat/test-variable-extraction.R |only openeo-1.3.0/openeo/vignettes/images |only openeo-1.3.0/openeo/vignettes/openeo-01-getting_started.Rmd |only openeo-1.3.0/openeo/vignettes/openeo-02-sample_data.Rmd |only openeo-1.3.0/openeo/vignettes/openeo-03-package-software-architecture.Rmd |only openeo-1.3.0/openeo/vignettes/openeo-04-process_graph_concepts.Rmd |only openeo-1.3.0/openeo/vignettes/openeo-05-process_graph_building_application.Rmd |only openeo-1.3.0/openeo/vignettes/openeo-06-developer_implementation_details.Rmd |only 190 files changed, 13796 insertions(+), 13594 deletions(-)
Title: A Vector Spatio-Temporal Data Structure for Data Analysis
Description: A spatiotemperal data object in a relational data structure to separate the recording of time variant/ invariant variables.
Author: H. Sherry Zhang [aut, cre] ,
Dianne Cook [aut] ,
Ursula Laa [aut] ,
Nicolas Langrene [aut] ,
Patricia Menendez [aut]
Maintainer: H. Sherry Zhang <huize.zhang@monash.edu>
Diff between cubble versions 0.1.1 dated 2022-06-02 and 0.2.0 dated 2022-11-17
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Title: Modeling Species Distributions in Three Dimensions
Description: Facilitates modeling species' ecological niches and
geographic distributions based on occurrences and environments that
have a vertical as well as horizontal component, and projecting models
into three-dimensional geographic space. Working in three dimensions is
useful in an aquatic context when the organisms one wishes to model can
be found across a wide range of depths in the water column. The package
also contains functions to automatically generate marine training
model training regions using machine learning, and interpolate and smooth
patchily sampled environmental rasters using thin plate splines.
Davis Rabosky AR, Cox CL, Rabosky DL, Title PO, Holmes IA, Feldman A, McGuire JA (2016) <doi:10.1038/ncomms11484>.
Nychka D, Furrer R, Paige J, Sain S (2021) <doi:10.5065/D6W957CT>.
Pateiro-Lopez B, Rodriguez-Casal A (2022) <https://CRAN.R-project.org/package=alphahull>.
Author: Hannah L. Owens [aut, cre] ,
Carsten Rahbek [aut]
Maintainer: Hannah L. Owens <hannah.owens@gmail.com>
Diff between voluModel versions 0.1.6 dated 2022-06-27 and 0.1.7 dated 2022-11-17
DESCRIPTION | 10 MD5 | 102 ++-- NAMESPACE | 4 NEWS.md | 8 R/BackgroundSamplingFunctions.R | 28 + R/inputProcessingUtilties.R | 14 R/marineBackground.R | 56 +- R/visualizations.R | 133 ++++-- R/xyzSample.R | 24 - inst/CITATION | 2 inst/doc/a_Introduction.R | 132 +++--- inst/doc/a_Introduction.Rmd | 152 ++++--- inst/doc/a_Introduction.html | 467 ++++++++++++---------- inst/doc/b_RasterProcessing.html | 144 +++--- inst/doc/c_DataSampling.R | 39 - inst/doc/c_DataSampling.Rmd | 41 + inst/doc/c_DataSampling.html | 287 ++++++------- inst/doc/d_Visualization.R | 25 - inst/doc/d_Visualization.Rmd | 38 - inst/doc/d_Visualization.html | 313 ++++++++++---- inst/doc/e_GLMWorkflow.R | 24 - inst/doc/e_GLMWorkflow.Rmd | 24 - inst/doc/e_GLMWorkflow.html | 459 +++++++++++---------- inst/extdata/PointsAndTrainingRegion.png |only inst/extdata/pointMap.png |only man/blendColor.Rd |only man/downsample.Rd | 5 man/figures/SoMePreview-01.png |only man/figures/SoMePreview.eps |only man/mSampling2D.Rd | 5 man/mSampling3D.Rd | 5 man/marineBackground.Rd | 11 man/pointCompMap.Rd | 23 - man/pointMap.Rd | 4 man/rasterComp.Rd | 12 man/transpColor.Rd | 5 man/xyzSample.Rd | 6 tests/testthat/test-BackgroundSamplingFunctions.R | 4 tests/testthat/test-inputProcessingUtilties.R | 11 tests/testthat/test-interpolateRaster.R | 2 tests/testthat/test-marineBackground.R | 7 tests/testthat/test-visualizations.R | 20 tests/testthat/test-xyzSample.R | 2 vignettes/AOUInterpAndSmooth.png |binary vignettes/OxygenTopBottom.png |binary vignettes/PointsAndTrainingRegion.png |binary vignettes/TemperatureTopBottom.png |binary vignettes/a_Introduction.Rmd | 152 ++++--- vignettes/alphaHullDemonstration-1.png |binary vignettes/c_DataSampling.Rmd | 41 + vignettes/clipToOceanDemo-1.png |binary vignettes/d_Visualization.Rmd | 38 - vignettes/e_GLMWorkflow.Rmd | 24 - vignettes/meridianWrapDemo-1.png |binary vignettes/pointMap.png |only 55 files changed, 1693 insertions(+), 1210 deletions(-)
Title: Work with Open Road Traffic Casualty Data from Great Britain
Description: Tools to help download, process and analyse the UK road collision data collected using the
'STATS19' form. The data are provided as 'CSV' files with detailed road safety data about the
circumstances of car crashes and other incidents on the roads resulting in
casualties in Great Britain from 1979, the types
(including make and model) of vehicles involved and the consequential casualties. The
statistics relate only to personal casualties on public roads that are reported
to the police, and subsequently recorded, using the 'STATS19' accident reporting form. See
the Department for Transport website
<https://www.data.gov.uk/dataset/cb7ae6f0-4be6-4935-9277-47e5ce24a11f/road-safety-data> for more
information on these data.
Author: Robin Lovelace [aut, cre] ,
Malcolm Morgan [aut] ,
Layik Hama [aut] ,
Mark Padgham [aut] ,
David Ranzolin [rev],
Adam Sparks [rev, ctb] ,
Ivo Wengraf [ctb],
RAC Foundation [fnd]
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between stats19 versions 2.0.0 dated 2021-10-29 and 2.0.1 dated 2022-11-17
DESCRIPTION | 12 MD5 | 40 - NEWS.md | 4 R/format.R | 11 R/get.R | 2 README.md | 4 build/vignette.rds |binary inst/doc/blog.Rmd | 4 inst/doc/blog.html | 585 +++++++++++++++--- inst/doc/stats19-training-setup.html | 399 ++++++++++-- inst/doc/stats19-training.Rmd | 2 inst/doc/stats19-training.html | 1087 ++++++++++++++++++++++++++--------- inst/doc/stats19-vehicles.html | 376 +++++++++--- inst/doc/stats19.Rmd | 4 inst/doc/stats19.html | 879 ++++++++++++++++++++++------ man/dl_stats19.Rd | 2 man/format_ppp.Rd | 5 man/get_stats19.Rd | 6 vignettes/blog.Rmd | 4 vignettes/stats19-training.Rmd | 2 vignettes/stats19.Rmd | 4 21 files changed, 2648 insertions(+), 784 deletions(-)
Title: Estimates Pareto-Optimal Solution for Hiring with 3 Objectives
Description: Estimates Pareto-optimal solution for personnel selection
with 3 objectives using Normal Boundary Intersection (NBI) algorithm
introduced by Das and Dennis (1998) <doi:10.1137/S1052623496307510>.
Takes predictor intercorrelations and predictor-objective relations as
input and generates a series of solutions containing predictor weights
as output. Accepts between 3 and 10 selection predictors. Maximum 2
objectives could be adverse impact objectives. Partially modeled after
De Corte (2006) TROFSS Fortran program
<https://users.ugent.be/~wdecorte/trofss.pdf> and updated from
'ParetoR' package described in Song et al. (2017)
<doi:10.1037/apl0000240>. For details, see Song et al. (in press).
Author: Chelsea Song [aut, cre]
Maintainer: Chelsea Song <qianqisong@gmail.com>
Diff between rMOST versions 0.0.1 dated 2022-11-14 and 0.0.2 dated 2022-11-17
DESCRIPTION | 6 +- MD5 | 16 +++--- NEWS.md | 5 + inst/CITATION | 4 - inst/doc/rMOST-vignette.Rmd | 2 inst/doc/rMOST-vignette.html | 5 - man/rMOST-package.Rd | 2 tests/testthat/test-MOST.R | 113 ------------------------------------------- vignettes/rMOST-vignette.Rmd | 2 9 files changed, 23 insertions(+), 132 deletions(-)
Title: Neutral Landscape Generator with Targets on Landscape Indices
Description: Interface to the 'flsgen' neutral landscape generator <https://github.com/dimitri-justeau/flsgen>. It allows to
- Generate fractal terrain;
- Generate landscape structures satisfying user targets over landscape indices;
- Generate landscape raster from landscape structures.
Author: Dimitri Justeau-Allaire, Gregoire Blanchard, Thomas Ibanez, Xavier Lorca, Ghislain Vieilledent, Philippe Birnbaum
Maintainer: Dimitri Justeau-Allaire <dimitri.justeau@gmail.com>
Diff between rflsgen versions 1.2.0 dated 2022-10-11 and 1.2.1 dated 2022-11-17
DESCRIPTION | 10 +++++----- MD5 | 23 ++++++++++++----------- NEWS.md | 14 ++++++++++---- R/zzz.R | 6 +----- build/vignette.rds |binary inst/doc/FAQ.pdf |binary inst/doc/Targets.pdf |binary inst/doc/UseCase1.pdf |binary inst/doc/UseCase2.Rmd | 2 +- inst/doc/UseCase2.pdf |binary inst/doc/UseCase3.pdf |binary java/README.md |only vignettes/UseCase2.Rmd | 2 +- 13 files changed, 30 insertions(+), 27 deletions(-)
Title: Kinetic Evaluation of Chemical Degradation Data
Description: Calculation routines based on the FOCUS Kinetics Report (2006,
2014). Includes a function for conveniently defining differential equation
models, model solution based on eigenvalues if possible or using numerical
solvers. If a C compiler (on windows: 'Rtools') is installed, differential
equation models are solved using automatically generated C functions.
Heteroscedasticity can be taken into account using variance by variable or
two-component error models as described by Ranke and Meinecke (2018)
<doi:10.3390/environments6120124>. Interfaces to several nonlinear
mixed-effects model packages are available, some of which are described by
Ranke et al. (2021) <doi:10.3390/environments8080071>. Please note that no
warranty is implied for correctness of results or fitness for a particular
purpose.
Author: Johannes Ranke [aut, cre, cph]
,
Katrin Lindenberger [ctb] ),
Rene Lehmann [ctb] and invilr),
Eurofins Regulatory AG [cph]
Maintainer: Johannes Ranke <johannes.ranke@jrwb.de>
Diff between mkin versions 1.1.1 dated 2022-07-12 and 1.2.0 dated 2022-11-17
mkin-1.1.1/mkin/R/parms.mkinfit.R |only mkin-1.1.1/mkin/TODO |only mkin-1.1.1/mkin/tests/testthat/print_sfo_saem_1.txt |only mkin-1.2.0/mkin/DESCRIPTION | 20 mkin-1.2.0/mkin/MD5 | 154 mkin-1.2.0/mkin/NAMESPACE | 59 mkin-1.2.0/mkin/NEWS.md | 26 mkin-1.2.0/mkin/R/anova.saem.mmkin.R |only mkin-1.2.0/mkin/R/aw.R | 36 mkin-1.2.0/mkin/R/endpoints.R | 27 mkin-1.2.0/mkin/R/illparms.R |only mkin-1.2.0/mkin/R/intervals.R | 5 mkin-1.2.0/mkin/R/llhist.R |only mkin-1.2.0/mkin/R/mhmkin.R |only mkin-1.2.0/mkin/R/mixed.mmkin.R | 3 mkin-1.2.0/mkin/R/mkinfit.R | 9 mkin-1.2.0/mkin/R/mkinpredict.R | 49 mkin-1.2.0/mkin/R/mmkin.R | 51 mkin-1.2.0/mkin/R/multistart.R |only mkin-1.2.0/mkin/R/nlme.R | 4 mkin-1.2.0/mkin/R/parent_solutions.R | 128 mkin-1.2.0/mkin/R/parms.R |only mkin-1.2.0/mkin/R/parplot.R |only mkin-1.2.0/mkin/R/plot.mixed.mmkin.R | 121 mkin-1.2.0/mkin/R/read_spreadsheet.R |only mkin-1.2.0/mkin/R/saem.R | 456 + mkin-1.2.0/mkin/R/set_nd_nq.R |only mkin-1.2.0/mkin/R/status.R |only mkin-1.2.0/mkin/R/summary.mkinfit.R | 17 mkin-1.2.0/mkin/R/summary.mmkin.R |only mkin-1.2.0/mkin/R/summary.saem.mmkin.R | 54 mkin-1.2.0/mkin/R/tex_listing.R |only mkin-1.2.0/mkin/README.md | 1 mkin-1.2.0/mkin/build/partial.rdb |binary mkin-1.2.0/mkin/build/vignette.rds |binary mkin-1.2.0/mkin/inst/doc/FOCUS_D.html | 12 mkin-1.2.0/mkin/inst/doc/FOCUS_L.html | 68 mkin-1.2.0/mkin/inst/doc/mkin.html | 2 mkin-1.2.0/mkin/inst/doc/twa.html | 2 mkin-1.2.0/mkin/man/FOMC.solution.Rd | 4 mkin-1.2.0/mkin/man/IORE.solution.Rd | 4 mkin-1.2.0/mkin/man/anova.saem.mmkin.Rd |only mkin-1.2.0/mkin/man/aw.Rd | 6 mkin-1.2.0/mkin/man/endpoints.Rd | 17 mkin-1.2.0/mkin/man/illparms.Rd |only mkin-1.2.0/mkin/man/llhist.Rd |only mkin-1.2.0/mkin/man/logLik.saem.mmkin.Rd |only mkin-1.2.0/mkin/man/mhmkin.Rd |only mkin-1.2.0/mkin/man/mkinfit.Rd | 4 mkin-1.2.0/mkin/man/mkinpredict.Rd | 33 mkin-1.2.0/mkin/man/multistart.Rd |only mkin-1.2.0/mkin/man/parms.Rd | 40 mkin-1.2.0/mkin/man/parplot.Rd |only mkin-1.2.0/mkin/man/plot.mixed.mmkin.Rd | 5 mkin-1.2.0/mkin/man/read_spreadsheet.Rd |only mkin-1.2.0/mkin/man/saem.Rd | 67 mkin-1.2.0/mkin/man/set_nd_nq.Rd |only mkin-1.2.0/mkin/man/status.Rd |only mkin-1.2.0/mkin/man/summary.mkinfit.Rd | 7 mkin-1.2.0/mkin/man/summary.mmkin.Rd |only mkin-1.2.0/mkin/man/summary.saem.mmkin.Rd | 7 mkin-1.2.0/mkin/man/tex_listing.Rd |only mkin-1.2.0/mkin/tests/testthat/FOCUS_2006_D.csf | 114 mkin-1.2.0/mkin/tests/testthat/_snaps/multistart |only mkin-1.2.0/mkin/tests/testthat/_snaps/plot/mixed-model-fit-for-nlme-object.svg | 2404 +++++----- mkin-1.2.0/mkin/tests/testthat/_snaps/plot/mixed-model-fit-for-saem-object-with-mkin-transformations.svg | 2332 ++++----- mkin-1.2.0/mkin/tests/testthat/anova_sfo_saem.txt |only mkin-1.2.0/mkin/tests/testthat/illparms_hfits_synth.txt |only mkin-1.2.0/mkin/tests/testthat/illparms_hfits_synth_no_ranef_auto.txt |only mkin-1.2.0/mkin/tests/testthat/print_dfop_nlme_1.txt | 12 mkin-1.2.0/mkin/tests/testthat/print_dfop_saemix_1.txt |only mkin-1.2.0/mkin/tests/testthat/print_fits_synth_const.txt |only mkin-1.2.0/mkin/tests/testthat/print_hfits_synth.txt |only mkin-1.2.0/mkin/tests/testthat/print_hfits_synth_no_ranef_auto.txt |only mkin-1.2.0/mkin/tests/testthat/print_multistart_biphasic.txt |only mkin-1.2.0/mkin/tests/testthat/print_sfo_saem_1_reduced.txt |only mkin-1.2.0/mkin/tests/testthat/setup_script.R | 38 mkin-1.2.0/mkin/tests/testthat/summary_dfop_nlme_1.txt | 36 mkin-1.2.0/mkin/tests/testthat/summary_hfit_sfo_tc.txt |only mkin-1.2.0/mkin/tests/testthat/summary_parent_FOCUS_2006.txt |only mkin-1.2.0/mkin/tests/testthat/summary_saem_biphasic_s.txt | 22 mkin-1.2.0/mkin/tests/testthat/test_SFORB.R | 15 mkin-1.2.0/mkin/tests/testthat/test_confidence.R | 14 mkin-1.2.0/mkin/tests/testthat/test_dmta.R | 8 mkin-1.2.0/mkin/tests/testthat/test_mhmkin.R |only mkin-1.2.0/mkin/tests/testthat/test_mixed.R | 8 mkin-1.2.0/mkin/tests/testthat/test_multistart.R |only mkin-1.2.0/mkin/tests/testthat/test_nafta.R | 2 mkin-1.2.0/mkin/tests/testthat/test_plot.R | 2 mkin-1.2.0/mkin/tests/testthat/test_saemix_parent.R | 138 mkin-1.2.0/mkin/tests/testthat/test_set_nd.R |only mkin-1.2.0/mkin/tests/testthat/test_summary.R | 6 mkin-1.2.0/mkin/tests/testthat/test_tests.R | 1 mkin-1.2.0/mkin/vignettes/web_only/benchmarks.html | 40 mkin-1.2.0/mkin/vignettes/web_only/benchmarks.rmd | 37 mkin-1.2.0/mkin/vignettes/web_only/multistart.html |only mkin-1.2.0/mkin/vignettes/web_only/multistart.rmd |only mkin-1.2.0/mkin/vignettes/web_only/saem_benchmarks.html |only mkin-1.2.0/mkin/vignettes/web_only/saem_benchmarks.rda |only mkin-1.2.0/mkin/vignettes/web_only/saem_benchmarks.rmd |only 100 files changed, 3671 insertions(+), 3056 deletions(-)
Title: Download and Extract Data from US EPA's ECOTOX Database
Description: The US EPA ECOTOX database is a freely available database
with a treasure of aquatic and terrestrial ecotoxicological data.
As the online search interface doesn't come with an API, this
package provides the means to easily access and search the database
in R. To this end, all raw tables are downloaded from the EPA website
and stored in a local SQLite database.
Author: Pepijn de Vries [aut, cre, dtc]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between ECOTOXr versions 0.1.1 dated 2021-10-05 and 0.2.0 dated 2022-11-17
DESCRIPTION | 18 +- MD5 | 39 ++-- NAMESPACE | 63 +++++-- NEWS | 16 + R/ECOTOXr.r | 3 R/cas_handlers.r |only R/database_access.r | 21 +- R/helpers.r | 377 ++++++++++++++++++++++++++++++++++++++++++++ R/imports.r | 15 + R/init.r | 116 +++++++++---- R/sysdata.rda |binary R/wrappers.r | 241 ++++++---------------------- man/ECOTOXr.Rd | 3 man/build_ecotox_sqlite.Rd | 5 man/cas.Rd |only man/download_ecotox_data.Rd | 26 ++- man/get_ecotox_url.Rd |only man/get_path.Rd | 3 man/list_ecotox_fields.Rd | 17 + man/reexports.Rd |only man/search_ecotox.Rd | 29 ++- tests/testthat/test_cas.r |only tests/testthat/test_that.r | 35 ++-- 23 files changed, 717 insertions(+), 310 deletions(-)
Title: Functions and Data for the Book 'Integrated Population Models'
Description: Provides functions and data sets to accompany the book 'Integrated Population Models: Theory and Ecological Applications with R and JAGS' by Michael Schaub and Marc Kéry (ISBN: 9780128205648).
Author: Andy Royle [cre],
Michael Schaub [aut],
Marc Kery [aut],
Mike Meredith [aut],
Raphael Arlettaz [dtc] ,
Gabriel Banderet [dtc] ,
Francois Biollaz [dtc] ,
Radames Bionda [dtc] ,
Thomas Bregnballe [dtc] ,
Hans Jakober [dtc] ,
Ioannis Ntzoufras [ctb],
Lu [...truncated...]
Maintainer: Andy Royle <aroyle@usgs.gov>
Diff between IPMbook versions 0.1.3 dated 2021-12-10 and 0.1.4 dated 2022-11-17
DESCRIPTION | 19 ++++++++++--------- MD5 | 4 ++-- NEWS | 4 ++++ 3 files changed, 16 insertions(+), 11 deletions(-)
Title: ICESat-2 Altimeter Data using R
Description: Programmatic connection to the 'OpenAltimetry API' <https://openaltimetry.org/data/swagger-ui/> to download and process 'ATL03' (Global Geolocated Photon Data), 'ATL06' (Land Ice Height), 'ATL07' (Sea Ice Height), 'ATL08' (Land and Vegetation Height), 'ATL10' (Sea Ice Freeboard), 'ATL12' (Ocean Surface Height) and 'ATL13' (Inland Water Surface Height) 'ICESat-2' Altimeter Data. The user has the option to download the data by selecting a bounding box from a 1- or 5-degree grid globally utilizing a shiny application. The 'ICESat-2' mission collects altimetry data of the Earth's surface. The sole instrument on 'ICESat-2' is the Advanced Topographic Laser Altimeter System (ATLAS) instrument that measures ice sheet elevation change and sea ice thickness, while also generating an estimate of global vegetation biomass. 'ICESat-2' continues the important observations of ice-sheet elevation change, sea-ice freeboard, and vegetation canopy height begun by 'ICESat' in 2003.
Author: Lampros Mouselimis [aut, cre] ,
OpenAltimetry.org [cph]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between IceSat2R versions 1.0.3 dated 2022-08-08 and 1.0.4 dated 2022-11-17
DESCRIPTION | 10 ++--- MD5 | 24 ++++++------ NEWS.md | 9 ++++ R/get_Atlas_data.R | 2 - R/mission_orbits.R | 21 ++++++++--- README.md | 2 - inst/data_files/technical_specs_urls.csv | 3 + inst/doc/IceSat-2_Atlas_products_PDF.pdf |binary inst/doc/IceSat-2_Mission_Orbits_PDF.pdf |binary inst/doc/IceSat-2_Virtual_File_System_Orbits_PDF.pdf |binary man/get_level3a_data.Rd | 2 - man/select_aoi_global_grid.Rd | 36 +++++++++---------- man/vsi_time_specific_orbits_wkt.Rd | 8 ++++ 13 files changed, 73 insertions(+), 44 deletions(-)