Title: Tools for Analyzing QTL Experiments
Description: Analysis of experimental crosses to identify genes
(called quantitative trait loci, QTLs) contributing to variation in
quantitative traits.
Broman et al. (2003) <doi:10.1093/bioinformatics/btg112>.
Author: Karl W Broman <broman@wisc.edu> and Hao Wu, with
ideas from Gary Churchill and Saunak Sen and contributions from
Danny Arends, Robert Corty, Timothee Flutre, Ritsert Jansen, Pjotr
Prins, Lars Ronnegard, Rohan Shah, Laura Shannon, Quoc Tran, Aaron
Wol [...truncated...]
Maintainer: Karl W Broman <broman@wisc.edu>
Diff between qtl versions 1.52 dated 2022-07-09 and 1.54 dated 2022-12-01
DESCRIPTION | 8 ++++---- MD5 | 48 ++++++++++++++++++++++++------------------------ NEWS.md | 15 +++++++++++++++ R/bcsft.R | 3 ++- R/countXO.R | 6 +++--- R/summary.cross.R | 6 +++--- R/util.R | 10 +++++----- README.md | 2 +- build/vignette.rds |binary data/badorder.RData |binary data/bristle3.RData |binary data/bristleX.RData |binary data/fake.4way.RData |binary data/fake.bc.RData |binary data/fake.f2.RData |binary data/hyper.RData |binary data/listeria.RData |binary data/locations.RData |binary data/map10.RData |binary data/mapthis.RData |binary data/multitrait.RData |binary inst/INSTALL_ME.txt | 16 ++++++++-------- inst/doc/bcsft.pdf |binary inst/doc/rqtltour.pdf |binary inst/doc/rqtltour2.pdf |binary 25 files changed, 65 insertions(+), 49 deletions(-)
Title: Analysis and Presentation of Social Scientific Data
Description: This is a collection of tools for more efficiently understanding
and sharing the results of (primarily) regression analyses. There are also a
number of miscellaneous functions for statistical and programming purposes.
Support for models produced by the survey and lme4 packages are points of
emphasis.
Author: Jacob A. Long [aut, cre]
Maintainer: Jacob A. Long <jacob.long@sc.edu>
Diff between jtools versions 2.2.0 dated 2022-04-25 and 2.2.1 dated 2022-12-01
DESCRIPTION | 16 MD5 | 118 ++--- NEWS.md | 20 + R/effect_plot.R | 22 - R/internal.R | 4 R/plot_coefs.R | 23 - R/programming_helpers.R | 6 R/summ_rq.R | 4 R/theme_nice.R | 9 build/partial.rdb |binary inst/doc/effect_plot.html | 12 inst/doc/summ.html | 20 - inst/doc/svycor.html | 8 man/effect_plot.Rd | 8 man/plot_summs.Rd | 4 man/summ.rq.Rd | 4 man/wrap_str.Rd | 5 tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/effect-plot/brm-multiv-default-int.svg | 6 tests/testthat/_snaps/effect-plot/brm-multiv-default-sigma-int.svg | 6 tests/testthat/_snaps/effect-plot/brm-multiv-selected-int.svg | 6 tests/testthat/_snaps/effect-plot/brm-multiv-selected-sigma-int.svg | 6 tests/testthat/_snaps/effect-plot/brm.svg | 6 tests/testthat/_snaps/effect-plot/glm-bin-2col.svg | 6 tests/testthat/_snaps/effect-plot/glm-cat-bar-offset-no-int.svg | 4 tests/testthat/_snaps/effect-plot/glm-cat-bar-offset.svg | 4 tests/testthat/_snaps/effect-plot/lm-rug-sides-lb.svg | 200 +++++----- tests/testthat/_snaps/effect-plot/lm-rug.svg | 200 +++++----- tests/testthat/_snaps/effect-plot/rstanarm.svg | 6 tests/testthat/_snaps/effect-plot/wlm-one-centered-robust-partials.svg | 6 tests/testthat/_snaps/effect-plot/wlm-one-centered-robust-points.svg | 6 tests/testthat/_snaps/effect-plot/wlm-one-centered-robust.svg | 6 tests/testthat/_snaps/export-summs/glm2-odds-modnames.svg | 46 +- tests/testthat/_snaps/export-summs/glm2-summ-args.svg | 42 +- tests/testthat/_snaps/export-summs/glm2.svg | 24 - tests/testthat/_snaps/export-summs/lm3-coef-names.svg | 20 - tests/testthat/_snaps/export-summs/lm3-coef-omit-facet.svg | 16 tests/testthat/_snaps/export-summs/lm3-coef-omit.svg | 20 - tests/testthat/_snaps/export-summs/lm3-summ-args.svg | 68 +-- tests/testthat/_snaps/export-summs/lm3.svg | 68 +-- tests/testthat/_snaps/export-summs/lmer-summ-arg.svg | 2 tests/testthat/_snaps/export-summs/lmer.svg | 2 tests/testthat/_snaps/export-summs/pc-brm1.svg | 14 tests/testthat/_snaps/export-summs/pc-brmmv-sigma-select-dv.svg | 6 tests/testthat/_snaps/export-summs/pc-brmmv-sigma.svg | 6 tests/testthat/_snaps/export-summs/pc-brmmv.svg | 6 tests/testthat/_snaps/export-summs/pc-brmmv2-multidist-select-dv.svg | 16 tests/testthat/_snaps/export-summs/pc-glm1-dists-exp.svg | 10 tests/testthat/_snaps/export-summs/pc-glm1-dists.svg | 16 tests/testthat/_snaps/export-summs/pc-lm-modnames.svg | 42 +- tests/testthat/_snaps/export-summs/pc-lm1-dists-scale.svg | 40 +- tests/testthat/_snaps/export-summs/pc-lm1-dists.svg | 40 +- tests/testthat/_snaps/export-summs/pc-lm2-dists-inner-ci-scale.svg | 40 +- tests/testthat/_snaps/export-summs/pc-lm2-dists-inner-ci.svg | 60 +-- tests/testthat/_snaps/export-summs/pc-lm2-dists.svg | 60 +-- tests/testthat/_snaps/export-summs/pc-lm2-inner-ci.svg | 56 +- tests/testthat/_snaps/export-summs/pc-lm3-coef-omit.svg | 20 - tests/testthat/_snaps/export-summs/pc-lm3-coefnames.svg | 20 - tests/testthat/_snaps/export-summs/svyglm-summ-arg.svg | 26 - tests/testthat/_snaps/export-summs/svyglm.svg | 26 - 60 files changed, 799 insertions(+), 764 deletions(-)
Title: Tidy Statistical Inference
Description: The objective of this package is to perform
inference using an expressive statistical grammar that coheres with
the tidy design framework.
Author: Andrew Bray [aut],
Chester Ismay [aut] ,
Evgeni Chasnovski [aut] ,
Simon Couch [aut, cre] ,
Ben Baumer [aut] ,
Mine Cetinkaya-Rundel [aut] ,
Ted Laderas [ctb] ,
Nick Solomon [ctb],
Johanna Hardin [ctb],
Albert Y. Kim [ctb] ,
Neal Fultz [ctb],
Doug Fr [...truncated...]
Maintainer: Simon Couch <simonpatrickcouch@gmail.com>
Diff between infer versions 1.0.3 dated 2022-08-22 and 1.0.4 dated 2022-12-01
DESCRIPTION | 6 MD5 | 134 +++--- NEWS.md | 6 R/shade_p_value.R | 3 R/utils.R | 2 README.md |only inst/doc/anova.html | 123 ++--- inst/doc/chi_squared.html | 119 ++--- inst/doc/infer.html | 115 ++--- inst/doc/observed_stat_examples.html | 151 +++--- inst/doc/t_test.html | 113 ++--- tests/testthat/_snaps/shade_confidence_interval/ci-both-fill.svg | 32 - tests/testthat/_snaps/shade_confidence_interval/ci-both-nofill.svg | 32 - tests/testthat/_snaps/shade_confidence_interval/ci-extra-aes-1.svg | 32 - tests/testthat/_snaps/shade_confidence_interval/ci-extra-aes-2.svg | 32 - tests/testthat/_snaps/shade_confidence_interval/ci-sim-fill.svg | 32 - tests/testthat/_snaps/shade_confidence_interval/ci-sim-nofill.svg | 32 - tests/testthat/_snaps/shade_confidence_interval/ci-theor-fill.svg | 2 tests/testthat/_snaps/shade_confidence_interval/ci-theor-nofill.svg | 2 tests/testthat/_snaps/shade_p_value/pval-both-both.svg | 40 - tests/testthat/_snaps/shade_p_value/pval-both-left.svg | 36 - tests/testthat/_snaps/shade_p_value/pval-both-null.svg | 30 - tests/testthat/_snaps/shade_p_value/pval-both-right.svg | 36 - tests/testthat/_snaps/shade_p_value/pval-direction-both.svg | 38 - tests/testthat/_snaps/shade_p_value/pval-direction-left.svg | 34 - tests/testthat/_snaps/shade_p_value/pval-direction-right.svg | 34 - tests/testthat/_snaps/shade_p_value/pval-extra-aes-1.svg | 38 - tests/testthat/_snaps/shade_p_value/pval-extra-aes-2.svg | 38 - tests/testthat/_snaps/shade_p_value/pval-extra-aes-3.svg | 38 - tests/testthat/_snaps/shade_p_value/pval-sim-both.svg | 38 - tests/testthat/_snaps/shade_p_value/pval-sim-left.svg | 34 - tests/testthat/_snaps/shade_p_value/pval-sim-null.svg | 30 - tests/testthat/_snaps/shade_p_value/pval-sim-right.svg | 34 - tests/testthat/_snaps/shade_p_value/pval-stat-match.svg | 38 - tests/testthat/_snaps/shade_p_value/pval-theor-both.svg | 218 +++++----- tests/testthat/_snaps/shade_p_value/pval-theor-left.svg | 218 +++++----- tests/testthat/_snaps/shade_p_value/pval-theor-right.svg | 218 +++++----- tests/testthat/_snaps/visualize/df-obs-stat-1.svg | 51 +- tests/testthat/_snaps/visualize/vis-no-hypothesize-sim.svg | 30 - tests/testthat/_snaps/visualize/vis-sim-both-1.svg | 51 +- tests/testthat/_snaps/visualize/vis-sim-both-2.svg | 51 +- tests/testthat/_snaps/visualize/vis-sim-left-1.svg | 34 - tests/testthat/_snaps/visualize/vis-sim-none-1.svg | 30 - tests/testthat/_snaps/visualize/vis-sim-right-1.svg | 34 - tests/testthat/_snaps/visualize/visualise.svg | 2 tests/testthat/_snaps/visualize/visualize.svg | 2 tests/testthat/_snaps/visualize/viz-assume-2t-ci.svg | 2 tests/testthat/_snaps/visualize/viz-assume-2t-p-val-both.svg | 20 tests/testthat/_snaps/visualize/viz-assume-2t-p-val-left.svg | 20 tests/testthat/_snaps/visualize/viz-assume-2t-p-val-right.svg | 20 tests/testthat/_snaps/visualize/viz-assume-2z-ci.svg | 2 tests/testthat/_snaps/visualize/viz-assume-2z-p-val-both.svg | 18 tests/testthat/_snaps/visualize/viz-assume-2z-p-val-left.svg | 20 tests/testthat/_snaps/visualize/viz-assume-2z-p-val-right.svg | 20 tests/testthat/_snaps/visualize/viz-assume-f-p-val.svg | 16 tests/testthat/_snaps/visualize/viz-assume-t-ci.svg | 2 tests/testthat/_snaps/visualize/viz-assume-t-p-val-both.svg | 20 tests/testthat/_snaps/visualize/viz-assume-t-p-val-left.svg | 20 tests/testthat/_snaps/visualize/viz-assume-t-p-val-right.svg | 16 tests/testthat/_snaps/visualize/viz-assume-z-ci.svg | 2 tests/testthat/_snaps/visualize/viz-assume-z-p-val-both.svg | 20 tests/testthat/_snaps/visualize/viz-assume-z-p-val-left.svg | 20 tests/testthat/_snaps/visualize/viz-assume-z-p-val-right.svg | 20 tests/testthat/_snaps/visualize/viz-fit-bare.svg | 90 ++-- tests/testthat/_snaps/visualize/viz-fit-conf-int.svg | 96 ++-- tests/testthat/_snaps/visualize/viz-fit-no-h0.svg |only tests/testthat/_snaps/visualize/viz-fit-p-val-both.svg | 149 +++--- tests/testthat/_snaps/visualize/viz-fit-p-val-left.svg | 102 ++-- tests/testthat/_snaps/visualize/viz-fit-p-val-right.svg | 99 ++-- 69 files changed, 1618 insertions(+), 1619 deletions(-)
Title: Tidyverse-Friendly Introductory Linear Regression
Description: Datasets and wrapper functions for tidyverse-friendly introductory linear regression, used in "Statistical Inference via Data Science: A ModernDive into R and the Tidyverse" available at <https://moderndive.com/>.
Author: Albert Y. Kim [aut, cre] ,
Chester Ismay [aut] ,
Andrew Bray [ctb] ,
Delaney Moran [ctb],
Evgeni Chasnovski [ctb] ,
Will Hopper [ctb] ,
Benjamin S. Baumer [ctb] ,
Marium Tapal [ctb] ,
Wayne Ndlovu [ctb],
Catherine Peppers [ctb],
Annah Mutaya [ctb],
A [...truncated...]
Maintainer: Albert Y. Kim <albert.ys.kim@gmail.com>
Diff between moderndive versions 0.5.4 dated 2022-05-13 and 0.5.5 dated 2022-12-01
DESCRIPTION | 8 MD5 | 18 NEWS.md | 7 build/partial.rdb |binary build/vignette.rds |binary inst/doc/moderndive.html | 1222 +++++++++++++++---------- man/geom_categorical_model.Rd | 14 man/geom_parallel_slopes.Rd | 19 tests/testthat/test-get_regression_functions.R | 9 vignettes/paper.html | 375 +++++-- 10 files changed, 1083 insertions(+), 589 deletions(-)
Title: Optimal One-Arm Two-Stage Phase II Design with Survival Endpoint
Description: The proposed two-stage design can be used for single-arm phase II trial designs with
time-to-event endpoints, which is desirable for clinical trials on immunotherapies
among cancer patients. There're two advantages of the proposed approach: 1) It provides
flexible choices of four underlying survival distributions and 2) the power of the design
is more accurately calculated using exact variance in one-sample log-rank test. The package
can be used for 1) planning the sample size; 2) conducting the interim and final analyses for
the Go/No-go decisions. More details about the design method can be found in the paper:
Wu, J, Chen L, Wei J, Weiss H, Chauhan A. (2020). <doi:10.1002/pst.1983>.
Author: Xiaomeng Yuan [aut, cre],
Haitao Pan [aut],
Jianrong Wu [aut]
Maintainer: Xiaomeng Yuan <xiaomeng.yuan@stjude.org>
Diff between OneArm2stage versions 1.1.4 dated 2022-09-07 and 1.1.5 dated 2022-12-01
OneArm2stage-1.1.4/OneArm2stage/R/Optimal.KJ.beta1.r |only OneArm2stage-1.1.4/OneArm2stage/R/Optimal.rKJ.beta1.r |only OneArm2stage-1.1.5/OneArm2stage/DESCRIPTION | 6 OneArm2stage-1.1.5/OneArm2stage/MD5 | 19 OneArm2stage-1.1.5/OneArm2stage/NEWS.md |only OneArm2stage-1.1.5/OneArm2stage/R/Optimal.KJ.c1.r |only OneArm2stage-1.1.5/OneArm2stage/R/Optimal.rKJ.c1.r |only OneArm2stage-1.1.5/OneArm2stage/inst/doc/OneArm2stage.R | 41 + OneArm2stage-1.1.5/OneArm2stage/inst/doc/OneArm2stage.Rmd | 48 + OneArm2stage-1.1.5/OneArm2stage/inst/doc/OneArm2stage.html | 417 ++----------- OneArm2stage-1.1.5/OneArm2stage/man/Optimal.KJ.Rd | 27 OneArm2stage-1.1.5/OneArm2stage/man/Optimal.rKJ.Rd | 41 + OneArm2stage-1.1.5/OneArm2stage/vignettes/OneArm2stage.Rmd | 48 + 13 files changed, 272 insertions(+), 375 deletions(-)
Title: Downloading, Reading and Analyzing PNADC Microdata
Description: Provides tools for downloading, reading and analyzing the PNADC,
a household survey from Brazilian Institute of Geography and Statistics - IBGE.
The data must be downloaded from the official website <https://www.ibge.gov.br/>.
Further analysis must be made using package 'survey'.
Author: Douglas Braga [aut],
Gabriel Assuncao [aut, cre],
Luna Hidalgo [ctb]
Maintainer: Gabriel Assuncao <pacotesipd@ibge.gov.br>
Diff between PNADcIBGE versions 0.7.0 dated 2021-11-30 and 0.7.1 dated 2022-12-01
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/get_pnadc.R | 26 +++++++++++++++++++++++++- R/pnadc_design.R | 48 ++++++++++++++++++++++++++++++++++++++++++++++-- R/pnadc_labeller.R | 2 ++ R/read_pnadc.R | 2 +- man/get_pnadc.Rd | 3 +++ 7 files changed, 86 insertions(+), 13 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization and Stochastic dominance. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole [aut, cre],
Roberto Spadim [ctb]
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 0.9.3 dated 2022-11-03 and 0.9.4 dated 2022-12-01
DESCRIPTION | 8 MD5 | 44 ++-- R/ARMA.R | 28 +- R/ARMA_optim.R | 30 ++- R/NNS_meboot.R | 2 R/Nowcast.R | 6 R/Partial_Moments.R | 5 R/Regression.R | 12 - README.md | 4 inst/doc/NNSvignette_Classification.html | 111 +++++------ inst/doc/NNSvignette_Clustering_and_Regression.html | 113 +++++------ inst/doc/NNSvignette_Correlation_and_Dependence.R | 2 inst/doc/NNSvignette_Correlation_and_Dependence.Rmd | 6 inst/doc/NNSvignette_Correlation_and_Dependence.html | 121 ++++++------ inst/doc/NNSvignette_Forecasting.R | 3 inst/doc/NNSvignette_Forecasting.Rmd | 5 inst/doc/NNSvignette_Forecasting.html | 186 +++++++++---------- inst/doc/NNSvignette_Partial_Moments.html | 111 +++++------ man/NNS.ARMA.optim.Rd | 1 man/NNS.meboot.Rd | 2 man/NNS.moments.Rd | 12 - vignettes/NNSvignette_Correlation_and_Dependence.Rmd | 6 vignettes/NNSvignette_Forecasting.Rmd | 5 23 files changed, 435 insertions(+), 388 deletions(-)
Title: Visualization Package for CanvasXpress in R
Description: Enables creation of visualizations using the CanvasXpress framework
in R. CanvasXpress is a standalone JavaScript library for reproducible research
with complete tracking of data and end-user modifications stored in a single
PNG image that can be played back. See <https://www.canvasxpress.org> for more
information.
Author: Isaac Neuhaus [aut],
Connie Brett [aut, cre]
Maintainer: Connie Brett <connie@aggregate-genius.com>
Diff between canvasXpress versions 1.40.6-1 dated 2022-11-11 and 1.40.6-2 dated 2022-12-01
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 5 ++++- inst/doc/additional_examples.html | 4 ++-- inst/doc/getting_started.html | 4 ++-- inst/htmlwidgets/canvasXpress.js | 1 + tests/testthat/test-other--BASE.R | 5 ++++- 7 files changed, 22 insertions(+), 15 deletions(-)
Title: Create Useful Summaries of the Portal Data
Description: Download and generate summaries for the rodent,
plant, ant, and weather data from the Portal Project. Portal is a
long-term (and ongoing) experimental monitoring site in the Chihuahua
desert. The raw data files can be found at
<https://github.com/weecology/portaldata>.
Author: Glenda M. Yenni [aut, cre] ,
Hao Ye [aut] ,
Erica M. Christensen [aut] ,
Juniper L. Simonis [aut] ,
Ellen K. Bledsoe [aut] ,
Renata M. Diaz [aut] ,
Shawn D. Taylor [aut] ,
Ethan P, White [aut] ,
S.K. Morgan Ernest [aut] ,
Weecology [cph]
Maintainer: Glenda M. Yenni <glenda@weecology.org>
Diff between portalr versions 0.3.10 dated 2022-07-14 and 0.3.11 dated 2022-12-01
DESCRIPTION | 8 - MD5 | 22 ++-- R/NDVI.R | 6 - R/Weather.R | 13 ++ R/load_data.R | 6 - R/process_rodent_data.R | 4 R/season_function.R | 4 inst/doc/portal_researcher_examples.html | 156 +++++++++++++++-------------- inst/doc/rodent-abundance-demo.html | 162 ++++++++++++++++--------------- man/summarize_plant_data.Rd | 16 +-- tests/testthat/test-01-data-retrieval.R | 2 tests/testthat/test-99-regression.R | 6 - 12 files changed, 213 insertions(+), 192 deletions(-)
Title: Single Trial Analysis (STA) of Field Trials
Description: Phenotypic analysis of field trials using mixed models with and
without spatial components. One of a series of statistical genetic packages
for streamlining the analysis of typical plant breeding experiments developed
by Biometris.
Some functions have been created to be used in conjunction with the R
package 'asreml' for the 'ASReml' software, which can be obtained upon
purchase from 'VSN' international (<https://vsni.co.uk/software/asreml-r>).
Author: Bart-Jan van Rossum [aut, cre]
,
Fred van Eeuwijk [ctb] ,
Martin Boer [ctb] ,
Marcos Malosetti [ctb] ,
Daniela Bustos-Korts [ctb] ,
Emilie J. Millet [ctb] ,
Joao Paulo [ctb] ,
Maikel Verouden [ctb] ,
Willem Kruijer [ctb] ,
Ron Wehrens [ctb] ,
Choazhi [...truncated...]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>
Diff between statgenSTA versions 1.0.9 dated 2022-06-24 and 1.0.10 dated 2022-12-01
DESCRIPTION | 12 - MD5 | 28 ++-- NEWS.md | 7 - R/createSTA.R | 2 R/data.R | 12 - R/extractSTA.R | 17 +- R/layoutPlot.R | 8 - R/scatterPlot.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/statgenSTA.html | 222 ++++++++++++++++++------------------ tests/testthat/Rplots.pdf |binary tests/testthat/test-ExtractAsreml.R | 2 tests/testthat/test-ExtractLme4.R | 2 tests/testthat/test-ExtractSpATS.R | 2 15 files changed, 159 insertions(+), 157 deletions(-)
Title: Stationary Subspace Analysis
Description: Stationary subspace analysis (SSA) is a blind source separation (BSS) variant where stationary components are separated from non-stationary components. Several SSA methods for multivariate time series are provided here (Flumian et al. (2021); Hara et al. (2010) <doi:10.1007/978-3-642-17537-4_52>) along with functions to simulate time series with time-varying variance and autocovariance (Patilea and Raissi(2014) <doi:10.1080/01621459.2014.884504>).
Author: Markus Matilainen [cre, aut] ,
Lea Flumian [aut],
Klaus Nordhausen [aut] ,
Sara Taskinen [aut]
Maintainer: Markus Matilainen <markus.matilainen@outlook.com>
Diff between ssaBSS versions 0.1 dated 2021-04-12 and 0.1.1 dated 2022-12-01
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/SSAcomb.R | 13 ++++++++----- R/SSAcor.R | 38 ++++++++++++++++++++++++++++---------- inst/ChangeLog | 3 +++ man/ASSA.Rd | 2 +- man/SSAcomb.Rd | 14 +++++++------- man/SSAcor.Rd | 28 +++++++++++++++++----------- man/SSAsave.Rd | 2 +- man/SSAsir.Rd | 2 +- man/ssaBSS-package.Rd | 4 ++-- man/ssabss-class.Rd | 4 ++-- 12 files changed, 85 insertions(+), 55 deletions(-)
Title: Combining Tree-Boosting with Gaussian Process and Mixed Effects
Models
Description: An R package that allows for combining tree-boosting with Gaussian process and mixed effects models. It also allows for independently doing tree-boosting as well as inference and prediction for Gaussian process and mixed effects models. See <https://github.com/fabsig/GPBoost> for more information on the software and Sigrist (2022, JMLR) <https://www.jmlr.org/papers/v23/20-322.html> and Sigrist (2022, TPAMI) <doi:10.1109/TPAMI.2022.3168152> for more information on the methodology.
Author: Fabio Sigrist [aut, cre],
Benoit Jacob [cph],
Gael Guennebaud [cph],
Nicolas Carre [cph],
Pierre Zoppitelli [cph],
Gauthier Brun [cph],
Jean Ceccato [cph],
Jitse Niesen [cph],
Other authors of Eigen for the included version of Eigen [ctb, cph],
Timot [...truncated...]
Maintainer: Fabio Sigrist <fabiosigrist@gmail.com>
Diff between gpboost versions 0.7.10 dated 2022-11-14 and 0.8.0 dated 2022-12-01
DESCRIPTION | 8 MD5 | 58 R/GPModel.R | 40 R/gpb.plot.partial.dependence.R | 4 R/gpb.train.R | 11 configure.ac | 2 demo/GPBoost_algorithm.R | 10 man/GPModel.Rd | 31 man/GPModel_shared_params.Rd | 32 man/fit.GPModel.Rd | 4 man/fit.Rd | 4 man/fitGPModel.Rd | 37 man/predict.GPModel.Rd | 28 man/predict.gpb.Booster.Rd | 26 man/set_prediction_data.GPModel.Rd | 28 man/set_prediction_data.Rd | 28 src/GP_utils.cpp | 1 src/Vecchia_utils.cpp | 50 src/include/GPBoost/Vecchia_utils.h | 7 src/include/GPBoost/likelihoods.h | 83 src/include/GPBoost/re_model_template.h | 471 +- src/include/GPBoost/type_defs.h | 4 src/include/LightGBM/utils/common.h | 64 src/io/metadata.cpp | 38 tests/testthat/test_GPBoost_algorithm.R | 1848 +++---- tests/testthat/test_GPBoost_algorithm_non_Gaussian_data.R | 3286 +++++++------- tests/testthat/test_GPModel_combined_GP_random_effects.R | 4 tests/testthat/test_GPModel_gaussian_process.R | 63 tests/testthat/test_GPModel_non_Gaussian_data.R | 116 tests/testthat/test_basic.R | 140 30 files changed, 3420 insertions(+), 3106 deletions(-)
Title: Density, Probability, Quantile ('DPQ') Computations
Description: Computations for approximations and alternatives for the 'DPQ'
(Density (pdf), Probability (cdf) and Quantile) functions for probability
distributions in R.
Primary focus is on (central and non-central) beta, gamma and related
distributions such as the chi-squared, F, and t.
--
This is for the use of researchers in these numerical approximation
implementations, notably for my own use in order to improve standard
R pbeta(), qgamma(), ..., etc: {'"dpq"'-functions}.
Author: Martin Maechler [aut, cre] ,
Morten Welinder [ctb] ),
Wolfgang Viechtbauer [ctb] , 2002),
Ross Ihaka [ctb] ,
Marius Hofert [ctb] , lssum),
R-core [ctb] ,
R Foundation [cph]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between DPQ versions 0.5-2 dated 2022-06-10 and 0.5-3 dated 2022-12-01
DESCRIPTION | 12 +- MD5 | 90 ++++++++++++-------- NAMESPACE | 10 ++ R/beta-fns.R | 73 ++++++++++++---- R/dpq-h.R | 9 +- R/nmath-h.R |only R/norm_f.R | 120 +++++++++++++++++++++++--- R/qgamma-fn.R | 9 ++ R/t-dist.R |only R/t-nonc-fn.R | 165 ++++++++++++++++++++++++++++++++++++- R/utils.R | 32 +++++++ TODO | 4 build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 37 ++++++++ inst/doc/Noncentral-Chisq.Rnw |only inst/doc/Noncentral-Chisq.pdf |binary inst/doc/comp-beta.Rnw |only inst/doc/comp-beta.pdf |binary inst/doc/log1pmx-etc.Rnw |only inst/doc/log1pmx-etc.pdf |binary inst/doc/qnorm-asymp.R |only inst/doc/qnorm-asymp.Rnw |only inst/doc/qnorm-asymp.pdf |only inst/extraR |only man/chebyshevPoly.Rd |only man/dbinom_raw.Rd | 2 man/dnbinomR.Rd | 2 man/gammaVer.Rd |only man/p1l1.Rd | 2 man/phypers.Rd | 10 -- man/pnormAsymp.Rd | 8 - man/pnormLU.Rd | 4 man/pnt.Rd | 2 man/qnormAsymp.Rd |only man/qnormR.Rd | 31 +++++- man/qnormUappr.Rd | 94 +++++++++++++++++---- man/qntR.Rd |only man/qtAppr.Rd | 77 ++++++++++++++--- man/qtR.Rd |only man/qtU.Rd |only src/310-pnbeta.c | 12 +- src/DPQ-misc.c | 2 src/DPQpkg.h | 11 ++ src/bd0.c | 6 - src/chebyshev.c | 73 +++++++++------- src/gamma-variants.c |only src/init.c | 3 src/pnchisq-it.c | 6 - src/ppois-direct.c | 4 src/stirlerr.c |only tests/pnt-prec.R | 56 ++++++++---- tests/pqnorm_extreme.R |only tests/t-nonc-tst.R | 187 +++++++++++++++++++++++++++++++++++++++--- vignettes/qnorm-asymp.Rnw |only vignettes/qnorm-litt.bib |only 56 files changed, 949 insertions(+), 204 deletions(-)
Title: Radiocarbon Calibration Curves
Description: The IntCal20 radiocarbon calibration curves (Reimer et al. 2020 <doi:10.1017/RDC.2020.68>) are provided as a data package, together with previous IntCal curves (IntCal13, IntCal09, IntCal04, IntCal98) and postbomb curves. Also provided are functions to copy the curves into memory, to plot the curves and their underlying data, to calibrate radiocarbon dates and to transform between different radiocarbon 'domains'.
Author: Maarten Blaauw [aut, cre]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between rintcal versions 0.5.0 dated 2022-10-04 and 0.5.2 dated 2022-12-01
DESCRIPTION | 12 - MD5 | 50 ++--- NAMESPACE | 5 NEWS.md | 4 R/calc.R | 12 - R/intcal_json.R |only R/plots.R | 57 +++--- R/rintcal.R | 4 build/partial.rdb |binary build/vignette.rds |binary data |only inst/doc/calculations.R | 4 inst/doc/calculations.Rmd | 6 inst/doc/calculations.html | 383 +++++++++------------------------------- inst/doc/intro.R | 11 + inst/doc/intro.Rmd | 19 +- inst/doc/intro.html | 423 +++++++++++---------------------------------- inst/doc/plots.Rmd | 4 inst/doc/plots.html | 353 ++++++++----------------------------- man/F14C.age.Rd | 4 man/age.F14C.Rd | 4 man/age.pMC.Rd | 4 man/intcal.Rd |only man/intcal.data.frames.Rd |only man/intcal.read.data.Rd |only man/intcal.write.data.Rd |only vignettes/calculations.Rmd | 6 vignettes/intro.Rmd | 19 +- vignettes/plots.Rmd | 4 29 files changed, 429 insertions(+), 959 deletions(-)
Title: Neighborhood Deprivation Indices
Description: Computes various metrics of socio-economic deprivation and disparity in
the United States. Some metrics are considered "spatial" because they
consider the values of neighboring (i.e., adjacent) census geographies in
their computation, while other metrics are "aspatial" because they only
consider the value within each census geography. Two types of aspatial
neighborhood deprivation indices (NDI) are available: including:
(1) based on Messer et al. (2006) <doi:10.1007/s11524-006-9094-x>
and (2) based on Andrews et al. (2020) <doi:10.1080/17445647.2020.1750066>
and Slotman et al. (2022) <doi:10.1016/j.dib.2022.108002>
who use variables chosen by Roux and Mair (2010)
<doi:10.1111/j.1749-6632.2009.05333.x>. Both are a decomposition
of multiple demographic characteristics from the U.S. Census Bureau
American Community Survey 5-year estimates (ACS-5; 2006-2010 onward). Using data
from the ACS-5 (2005-2009 onward), the package can also (1) compute the spatial
Racial Iso [...truncated...]
Author: Ian D. Buller [aut, cre, cph] ,
NCI [cph, fnd]
Maintainer: Ian D. Buller <ian.buller@alumni.emory.edu>
Diff between ndi versions 0.1.2 dated 2022-09-30 and 0.1.3 dated 2022-12-01
DESCRIPTION | 21 +-- MD5 | 48 ++++---- NAMESPACE | 3 NEWS.md | 21 +++ R/anthopolos.R | 6 - R/bravo.R | 53 ++++++++- R/duncan.R |only R/gini.R | 2 R/globals.R | 3 R/krieger.R | 2 R/messer.R | 2 R/package.R | 11 + R/powell_wiley.R | 2 R/utils.R |only README.md | 51 +++++++- inst/CITATION | 24 +++- inst/doc/vignette.html | 227 +++++++++++++++++++++++++++++++++------ man/bravo.Rd | 1 man/duncan.Rd |only man/ndi-package.Rd | 8 - tests/testthat/test-anthopolos.R | 7 - tests/testthat/test-bravo.R | 9 - tests/testthat/test-duncan.R |only tests/testthat/test-gini.R | 2 tests/testthat/test-krieger.R | 6 - tests/testthat/test-messer.R | 2 vignettes/vignette.Rmd | 60 ++++++++++ 27 files changed, 461 insertions(+), 110 deletions(-)
Title: Download Geographic Data
Description: Functions for downloading of geographic data for use in spatial analysis and mapping. The package facilitates access to climate, elevation, land use, soil, species occurrence, accessibility, administrative boundaries and other data.
Author: Robert J. Hijmans [cre, aut], Aniruddha Ghosh [ctb], Alex Mandel [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between geodata versions 0.4-13 dated 2022-11-15 and 0.5-3 dated 2022-12-01
DESCRIPTION | 8 +++--- MD5 | 32 ++++++++++++------------ R/crop_sacks.R | 38 +++++++++++++++++++++++++--- R/crop_spam.R | 2 - R/crops_monfreda.R | 4 +-- R/elevation.R | 6 ++-- R/gadm.R | 28 ++++++++++++--------- R/helper-functions.R | 30 ++++++++++++++++------ R/landuse.R | 25 +++++++++++-------- R/occurrence.R | 59 ++++++++++++++++++++------------------------- R/osm.R | 2 - R/pop.R | 2 - R/soil_isda.R | 7 +++-- R/travel_time.R | 13 +++------ R/worldclim.R | 36 ++++++++++++++------------- build/partial.rdb |binary man/crop_calendar_Sacks.Rd | 4 +-- 17 files changed, 172 insertions(+), 124 deletions(-)
Title: Generalized Dissimilarity Modeling
Description: A toolkit with functions to fit, plot, summarize, and apply Generalized Dissimilarity Models. Mokany K, Ware C, Woolley SNC, Ferrier S, Fitzpatrick MC (2022) <doi:10.1111/geb.13459> Ferrier S, Manion G, Elith J, Richardson K (2007) <doi:10.1111/j.1472-4642.2007.00341.x>.
Author: Matt Fitzpatrick [aut, cre] ,
Karel Mokany [aut] ,
Glenn Manion [aut],
Diego Nieto-Lugilde [aut] ,
Simon Ferrier [aut] ,
Matthew Lisk [ctb],
Chris Ware [ctb],
Skip Woolley [ctb],
Tom Harwood [ctb]
Maintainer: Matt Fitzpatrick <mfitzpatrick@umces.edu>
Diff between gdm versions 1.5.0-3 dated 2022-04-05 and 1.5.0-9.1 dated 2022-12-01
DESCRIPTION | 8 - MD5 | 20 ++-- NEWS.md | 24 +++++ R/gdm.formatsitepair.R | 24 ++--- R/gdm.partition.deviance.R | 2 R/gdm.variable.importance.R | 207 +++++++++++++++++++++++++------------------- README.md | 74 +++------------ man/gdm.varImp.Rd | 2 src/Gdmlib.cpp | 14 +- src/Message.cpp | 71 +++++++-------- src/NNLS_Double.cpp | 4 11 files changed, 235 insertions(+), 215 deletions(-)
Title: Flow/Mass Cytometry Gating via Spatial Kernel Density Estimation
Description: Estimates statistically significant marker combination values within
which one immunologically distinctive group (i.e., disease case) is more associated than
another group (i.e., healthy control), successively, using various combinations (i.e.,
"gates") of markers to examine features of cells that may be different between
groups. For a two-group comparison, the 'gateR' package uses the spatial relative risk
function estimated using the 'sparr' package. Details about the 'sparr' package
methods can be found in the tutorial: Davies et al. (2018) <doi:10.1002/sim.7577>. Details
about kernel density estimation can be found in J. F. Bithell (1990) <doi:10.1002/sim.4780090616>.
More information about relative risk functions using kernel density estimation can be
found in J. F. Bithell (1991) <doi:10.1002/sim.4780101112>.
Author: Ian D. Buller [aut, cre, cph] ,
Elena Hsieh [ctb] ,
Debashis Ghosh [ctb] ,
Lance A. Waller [ctb] ,
NCI [cph]
Maintainer: Ian D. Buller <ian.buller@alumni.emory.edu>
Diff between gateR versions 0.1.11 dated 2022-08-26 and 0.1.12 dated 2022-12-01
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NEWS.md | 3 +++ R/package.R | 2 +- README.md | 8 +++++--- inst/CITATION | 4 ++-- man/gateR-package.Rd | 2 +- 7 files changed, 24 insertions(+), 19 deletions(-)
Title: Adaptive Lasso for the Cox Regression with Interval Censored and
Possibly Left Truncated Data
Description: Penalized variable selection tools for the Cox
proportional hazards model with interval censored and possibly
left truncated data. It performs variable selection via
penalized nonparametric maximum likelihood estimation with an
adaptive lasso penalty. The optimal thresholding parameter can be
searched by the package based on the profile Bayesian information
criterion (BIC). The asymptotic validity of the methodology is
established in Li et al. (2019 <doi:10.1177/0962280219856238>).
The unpenalized nonparametric maximum likelihood estimation for
interval censored and possibly left truncated data is also
available.
Author: Chenxi Li, Daewoo Pak and David Todem
Maintainer: Daewoo Pak <heavyrain.pak@gmail.com>
Diff between ALassoSurvIC versions 0.1.0 dated 2019-10-16 and 0.1.1 dated 2022-12-01
DESCRIPTION | 6 - MD5 | 23 ++-- R/alacoxIC.default.R | 207 ++++++++++++++++++++++---------------------- R/fun_arglist.R | 3 R/print.unpencoxIC.R | 103 +++++++++++---------- R/unpencoxIC.default.R | 158 +++++++++++++++++---------------- build |only man/ALassoSurvIC-package.Rd | 2 man/alacoxIC.Rd | 5 - man/baseline.Rd | 6 - man/unpencoxIC.Rd | 11 +- src/RcppExports.cpp | 5 + src/fun_sublr.cpp | 2 13 files changed, 280 insertions(+), 251 deletions(-)
Title: Store and Operate with Arbitrarily Large Integers
Description: Multi-precision library that allows to store and operate with arbitrarily big integers without
loss of precision. It includes a large list of tools to work with them, like:
- Arithmetic and logic operators
- Modular-arithmetic operators
- Computer Number Theory utilities
- Probabilistic primality tests
- Factorization algorithms
- Random generators of diferent types of integers.
Author: Javier Leiva Cuadrado
Maintainer: Javier Leiva Cuadrado <jleivacuadrado@gmail.com>
Diff between VeryLargeIntegers versions 0.1.8 dated 2020-01-29 and 0.1.9 dated 2022-12-01
DESCRIPTION | 7 +++---- MD5 | 6 +++--- src/RcppExports.cpp | 5 +++++ src/vliC.cpp | 16 ++++++++-------- 4 files changed, 19 insertions(+), 15 deletions(-)
More information about VeryLargeIntegers at CRAN
Permanent link
Title: Wrapper for 'RcppSpdlog' Functions
Description: Logging functions in 'RcppSpdlog' provide access to the logging
functionality from the 'spdlog' 'C++' library. This package offers shorter convenience
wrappers for the 'R' functions which match the 'C++' functions, namely via, say,
'spdl::debug()' at the debug level. The actual formatting is done by the
'fmt::format()' function from the 'fmtlib' library (that is also 'std::format()'
in 'C++20' or later).
Author: Dirk Eddelbuettel [aut, cre]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between spdl versions 0.0.1 dated 2022-11-22 and 0.0.2 dated 2022-12-01
ChangeLog | 35 +++++++++++++++++++++++++++++++++++ DESCRIPTION | 10 ++++++---- MD5 | 16 ++++++++-------- R/wrap.R | 30 +++++++++++++++++------------- README.md | 41 ++++++++++++++++++++++++++++++++--------- inst/NEWS.Rd | 6 ++++++ man/setup.Rd | 6 ++++++ tests/simpleTest.R | 6 ++++++ tests/simpleTest.Rout.save | 10 +++++++++- 9 files changed, 125 insertions(+), 35 deletions(-)
Title: Helper Package for Installing OpenCV with R
Description: Installs 'OpenCV' for use by other packages. 'OpenCV' <https://opencv.org/>
is library of programming functions mainly aimed at real-time computer
vision. This 'Lite' version installs the stable base version of 'OpenCV' and
some of its experimental externally contributed modules. It does not provide
R bindings directly.
Author: Simon Garnier [aut, cre] ,
Muschelli John [ctb]
Maintainer: Simon Garnier <garnier@njit.edu>
Diff between ROpenCVLite versions 4.60.2 dated 2022-07-17 and 4.60.3 dated 2022-12-01
DESCRIPTION | 15 +-- MD5 | 20 ++-- NEWS.md | 12 ++ R/opencv.R | 35 ++++++-- build/vignette.rds |binary inst/doc/install.Rmd | 70 ++++++++++------ inst/doc/install.html | 218 +++++++++++++++++++++++++++++--------------------- inst/doc/usage.Rmd | 1 inst/doc/usage.html | 15 +-- vignettes/install.Rmd | 70 ++++++++++------ vignettes/usage.Rmd | 1 11 files changed, 283 insertions(+), 174 deletions(-)
Title: Deciphering Biological Networks with Patterned Heterogeneous
Measurements
Description: A modeling tool dedicated to biological network modeling (Bertrand and others 2020, <doi:10.1093/bioinformatics/btaa855>). It allows for single or joint modeling of, for instance, genes and proteins. It starts with the selection of the actors that will be the used in the reverse engineering upcoming step. An actor can be included in that selection based on its differential measurement (for instance gene expression or protein abundance) or on its time course profile. Wrappers for actors clustering functions and cluster analysis are provided. It also allows reverse engineering of biological networks taking into account the observed time course patterns of the actors. Many inference functions are provided and dedicated to get specific features for the inferred network such as sparsity, robust links, high confidence links or stable through resampling links. Some simulation and prediction tools are also available for cascade networks (Jung and others 2014, <doi:10.1093/bioinformati [...truncated...]
Author: Frederic Bertrand [cre, aut] ,
Myriam Maumy-Bertrand [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@utt.fr>
Diff between Patterns versions 1.3 dated 2021-03-21 and 1.4 dated 2022-12-01
Patterns-1.3/Patterns/NEWS |only Patterns-1.3/Patterns/R/micro_array-network.R |only Patterns-1.3/Patterns/R/micro_array.R |only Patterns-1.3/Patterns/R/micropredict.R |only Patterns-1.3/Patterns/R/network.R |only Patterns-1.3/Patterns/man/analyze_network-network-method.Rd |only Patterns-1.3/Patterns/man/as.micro_array.Rd |only Patterns-1.3/Patterns/man/clustExploration-micro_array-method.Rd |only Patterns-1.3/Patterns/man/clustInference-micro_array-numeric-method.Rd |only Patterns-1.3/Patterns/man/cutoff-network-method.Rd |only Patterns-1.3/Patterns/man/evolution-network-method.Rd |only Patterns-1.3/Patterns/man/geneNeighborhood-network-method.Rd |only Patterns-1.3/Patterns/man/gene_expr_simulation-network-method.Rd |only Patterns-1.3/Patterns/man/head-micro_array-method.Rd |only Patterns-1.3/Patterns/man/micro_array-class.Rd |only Patterns-1.3/Patterns/man/micropredict-class.Rd |only Patterns-1.3/Patterns/man/network-class.Rd |only Patterns-1.3/Patterns/man/predict-micro_array-method.Rd |only Patterns-1.3/Patterns/man/print-methods.Rd |only Patterns-1.3/Patterns/man/probeMerge-micro_array-method.Rd |only Patterns-1.3/Patterns/man/unionMicro-methods.Rd |only Patterns-1.3/Patterns/man/unsupervised_clustering-micro_array-numeric-numeric-method.Rd |only Patterns-1.3/Patterns/man/unsupervised_clustering_auto_m_c-micro_array-method.Rd |only Patterns-1.4/Patterns/DESCRIPTION | 30 Patterns-1.4/Patterns/MD5 | 114 - Patterns-1.4/Patterns/NAMESPACE | 24 Patterns-1.4/Patterns/NEWS.md | 4 Patterns-1.4/Patterns/R/Patterns-package.R | 115 - Patterns-1.4/Patterns/R/datasets.R | 6 Patterns-1.4/Patterns/R/global.R | 26 Patterns-1.4/Patterns/R/omics_array-omics_network.R |only Patterns-1.4/Patterns/R/omics_array.R |only Patterns-1.4/Patterns/R/omics_network.R |only Patterns-1.4/Patterns/R/omics_predict.R |only Patterns-1.4/Patterns/README.md | 945 +--------- Patterns-1.4/Patterns/build/partial.rdb |binary Patterns-1.4/Patterns/build/vignette.rds |binary Patterns-1.4/Patterns/data/M.RData |binary Patterns-1.4/Patterns/data/Net.RData |binary Patterns-1.4/Patterns/data/Net_inf_PL.RData |binary Patterns-1.4/Patterns/data/Selection.RData |binary Patterns-1.4/Patterns/data/network.RData |binary Patterns-1.4/Patterns/data/network2gp.RData |binary Patterns-1.4/Patterns/data/networkCascade.RData |binary Patterns-1.4/Patterns/inst/doc/ExampleCLL.R | 16 Patterns-1.4/Patterns/inst/doc/ExampleCLL.Rmd | 18 Patterns-1.4/Patterns/inst/doc/ExampleCLL.html | 442 +++- Patterns-1.4/Patterns/inst/doc/IntroPatterns.R | 64 Patterns-1.4/Patterns/inst/doc/IntroPatterns.Rmd | 68 Patterns-1.4/Patterns/inst/doc/IntroPatterns.html | 741 +++++-- Patterns-1.4/Patterns/man/CLL.Rd | 5 Patterns-1.4/Patterns/man/Patterns-package.Rd | 2 Patterns-1.4/Patterns/man/analyze_network-omics_network-method.Rd |only Patterns-1.4/Patterns/man/as.omics_array.Rd |only Patterns-1.4/Patterns/man/clustExploration-omics_array-method.Rd |only Patterns-1.4/Patterns/man/clustInference-omics_array-numeric-method.Rd |only Patterns-1.4/Patterns/man/compare-methods.Rd | 18 Patterns-1.4/Patterns/man/cutoff-omics_network-method.Rd |only Patterns-1.4/Patterns/man/dim.Rd | 10 Patterns-1.4/Patterns/man/evolution-omics_network-method.Rd |only Patterns-1.4/Patterns/man/geneNeighborhood-omics_network-method.Rd |only Patterns-1.4/Patterns/man/geneSelection.Rd | 32 Patterns-1.4/Patterns/man/gene_expr_simulation-omics_network-method.Rd |only Patterns-1.4/Patterns/man/head-omics_array-method.Rd |only Patterns-1.4/Patterns/man/inference.Rd | 14 Patterns-1.4/Patterns/man/network_random.Rd | 2 Patterns-1.4/Patterns/man/omics_array-class.Rd |only Patterns-1.4/Patterns/man/omics_network-class.Rd |only Patterns-1.4/Patterns/man/omics_predict-class.Rd |only Patterns-1.4/Patterns/man/plot-methods.Rd | 37 Patterns-1.4/Patterns/man/position-methods.Rd | 12 Patterns-1.4/Patterns/man/predict-omics_array-method.Rd |only Patterns-1.4/Patterns/man/probeMerge-omics_array-method.Rd |only Patterns-1.4/Patterns/man/show-methods.Rd |only Patterns-1.4/Patterns/man/summary-methods.Rd | 10 Patterns-1.4/Patterns/man/unionOmics-methods.Rd |only Patterns-1.4/Patterns/man/unsupervised_clustering-omics_array-numeric-numeric-method.Rd |only Patterns-1.4/Patterns/man/unsupervised_clustering_auto_m_c-omics_array-method.Rd |only Patterns-1.4/Patterns/vignettes/ExampleCLL.Rmd | 18 Patterns-1.4/Patterns/vignettes/IntroPatterns.Rmd | 68 Patterns-1.4/Patterns/vignettes/forgotten_TF.pdf |only 81 files changed, 1382 insertions(+), 1459 deletions(-)
Title: Algorithms for Routing and Solving the Traffic Assignment
Problem
Description: Calculation of distances, shortest paths and isochrones on weighted graphs using several variants of Dijkstra algorithm.
Proposed algorithms are unidirectional Dijkstra (Dijkstra, E. W. (1959) <doi:10.1007/BF01386390>),
bidirectional Dijkstra (Goldberg, Andrew & Fonseca F. Werneck, Renato (2005) <https://archive.siam.org/meetings/alenex05/papers/03agoldberg.pdf>),
A* search (P. E. Hart, N. J. Nilsson et B. Raphael (1968) <doi:10.1109/TSSC.1968.300136>),
new bidirectional A* (Pijls & Post (2009) <https://repub.eur.nl/pub/16100/ei2009-10.pdf>),
Contraction hierarchies (R. Geisberger, P. Sanders, D. Schultes and D. Delling (2008) <doi:10.1007/978-3-540-68552-4_24>),
PHAST (D. Delling, A.Goldberg, A. Nowatzyk, R. Werneck (2011) <doi:10.1016/j.jpdc.2012.02.007>).
Algorithms for solving the traffic assignment problem are All-or-Nothing assignment,
Method of Successive Averages,
Frank-Wolfe algorithm (M. Fukushima (1984) <doi:10.1016/0191-2615(84 [...truncated...]
Author: Vincent Larmet
Maintainer: Vincent Larmet <larmet.vincent@gmail.com>
Diff between cppRouting versions 3.0 dated 2022-11-28 and 3.1 dated 2022-12-01
DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- NEWS.md | 5 +++++ R/zzz.R |only inst/doc/cppRouting.html | 4 ++-- 5 files changed, 15 insertions(+), 9 deletions(-)
Title: Trajectory Miner: a Toolbox for Exploring and Rendering
Sequences
Description: Toolbox for the manipulation, description and rendering of categorical sequences, and more generally the mining of sequence data in the field of social sciences. Although this sequence analysis toolbox is primarily intended for analyzing state or event sequences that describe life courses such as family formation histories or professional careers, its features also apply to many other kinds of categorical sequence data. It accepts many different sequence representations as input and provides tools for converting sequences from one format to another. It offers several functions for describing and rendering sequences, for computing distances between sequences with different metrics (among which optimal matching), original dissimilarity-based analysis tools, and functions for extracting the most frequent subsequences and identifying the most discriminating ones among them. A user's guide can be found on the TraMineR web page.
Author: Alexis Gabadinho [aut, cph],
Matthias Studer [aut, cph] ,
Nicolas Mueller [aut],
Reto Buergin [aut] ,
Pierre-Alexandre Fonta [aut],
Gilbert Ritschard [aut, cre, cph]
Maintainer: Gilbert Ritschard <gilbert.ritschard@unige.ch>
Diff between TraMineR versions 2.2-5 dated 2022-08-30 and 2.2-6 dated 2022-12-01
DESCRIPTION | 11 ++-- MD5 | 77 +++++++++++++++---------------- NEWS | 34 +++++++++++++ R/dissrf.R | 16 ++++-- R/plot.seqrf.R | 18 ++++++- R/plot.stslist.R | 12 ++++ R/plot.stslist.freq.R | 22 +++++++- R/plot.stslist.meant.R | 11 ++++ R/plot.stslist.modst.R | 13 +++++ R/plot.stslist.rep.R | 30 ++++++++---- R/plot.stslist.statd.R | 11 ++++ R/seqHtplot.R | 2 R/seqdplot.R | 4 - R/seqfplot.R | 2 R/seqiplot.R | 4 - R/seqmsplot.R | 2 R/seqmtplot.R | 2 R/seqpcplot.R | 20 ++++---- R/seqplot.R | 86 ++++++++++++++++++++++++++--------- R/seqplotMD.R |only R/seqrfplot.R | 2 R/seqrplot.R | 2 R/seqstatl.R | 5 +- build/partial.rdb |binary build/vignette.rds |binary data/ex1.rda |binary data/ex2.rda |binary data/famform.rda |binary inst/NEWS.Rd | 40 +++++++++++++++- inst/doc/TraMineR-state-sequence.pdf |binary man/TraMineR-package.Rd | 2 man/dissdomassoc.Rd | 4 - man/seqdist.Rd | 8 +-- man/seqpcplot.Rd | 31 +++++++----- man/seqplot.Rd | 33 ++++++------- src/TraMineR.h | 2 src/eventdictionary.cpp | 4 - src/eventdictionary.h | 2 src/init.c | 3 - src/traminerdebug.cpp | 2 40 files changed, 368 insertions(+), 149 deletions(-)
Title: Paws Low-Level Amazon Web Services API
Description: Functions for making low-level API requests to Amazon Web Services
<https://aws.amazon.com>. The functions handle building, signing, and
sending requests, and receiving responses. They are designed to help build
higher-level interfaces to individual services, such as Simple Storage
Service (S3).
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.common versions 0.5.1 dated 2022-10-02 and 0.5.2 dated 2022-12-01
DESCRIPTION | 17 +- MD5 | 31 ++-- NAMESPACE | 4 NEWS.md | 9 + R/config.R | 134 ++++++++++++++---- R/credential_providers.R | 109 +++++++++----- R/credential_sts.R | 46 +++++- R/custom_s3.R | 210 +++++++++++++++++++++++++++- R/logging.R |only R/net.R | 19 +- R/onLoad.R |only R/url.R | 10 - R/util.R | 3 man/paws_config_log.Rd |only tests/testthat/helper.R |only tests/testthat/test_config.R | 215 ++++++++++++++++++++++++++++- tests/testthat/test_credential_providers.R | 32 ++++ tests/testthat/test_custom_s3.R | 174 +++++++++++++++++++++++ tests/testthat/test_logging.R |only 19 files changed, 895 insertions(+), 118 deletions(-)
Title: Estimation of Recombination Rate and Maternal LD in Half-Sibs
Description: Paternal recombination rate and maternal linkage disequilibrium
(LD) are estimated for pairs of biallelic markers such as single nucleotide
polymorphisms (SNPs) from progeny genotypes and sire haplotypes. The
implementation relies on paternal half-sib families. If maternal half-sib
families are used, the roles of sire/dam are swapped. Multiple families can
be considered. For parameter estimation, at least one sire has to be double
heterozygous at the investigated pairs of SNPs.
Based on recombination rates, genetic distances between markers can be
estimated. Markers with unusually large recombination rate to markers in
close proximity (i.e. putatively misplaced markers) shall be discarded in
this derivation.
A workflow description is attached as vignette.
*A pipeline is available at GitHub*
<https://github.com/wittenburg/hsrecombi>
Hampel, Teuscher, Gomez-Raya, Doschoris, Wittenburg (2018) "Estimation of
recombination rate and maternal linkage disequilibrium in half-sibs"
<doi [...truncated...]
Author: Doerte Wittenburg [aut, cre]
Maintainer: Doerte Wittenburg <wittenburg@fbn-dummerstorf.de>
Diff between hsrecombi versions 0.5.0 dated 2022-11-29 and 0.5.1 dated 2022-12-01
DESCRIPTION | 8 +- MD5 | 23 +++--- NAMESPACE | 1 NEWS.md | 4 + R/functions.R | 135 ++++++++++++++++++++++++++++----------- build/partial.rdb |binary inst/doc/hsrecombi_workflow.html | 17 ++-- man/felsenstein.Rd | 5 + man/haldane.Rd | 5 + man/karlin.Rd | 5 + man/kosambi.Rd | 5 + man/rao-inverse.Rd |only man/rao.Rd | 10 ++ 13 files changed, 150 insertions(+), 68 deletions(-)
Title: Correct Mass Isotopologue Distribution Vectors
Description: In metabolic flux experiments tracer molecules (often glucose
containing labelled carbon) are incorporated in compounds measured
using mass spectrometry. The mass isotopologue distributions of these
compounds needs to be corrected for natural abundance of labelled
carbon and other effects, which are specific on the compound and
ionization technique applied. This package provides functions to
correct such effects in gas chromatography atmospheric pressure
chemical ionization mass spectrometry analyses.
Author: Jan Lisec [aut, cre]
Maintainer: Jan Lisec <jan.lisec@bam.de>
Diff between CorMID versions 0.1.6 dated 2022-05-03 and 0.1.7 dated 2022-12-01
CorMID-0.1.6/CorMID/man/FitMID.Rd |only CorMID-0.1.6/CorMID/man/calc_mid_error.Rd |only CorMID-0.1.6/CorMID/man/poss_local.Rd |only CorMID-0.1.6/CorMID/man/weight_errors.Rd |only CorMID-0.1.7/CorMID/DESCRIPTION | 41 - CorMID-0.1.7/CorMID/MD5 | 44 -- CorMID-0.1.7/CorMID/NAMESPACE | 30 - CorMID-0.1.7/CorMID/R/CalcTheoreticalMDV.R | 70 ++- CorMID-0.1.7/CorMID/R/CorMID.R | 14 CorMID-0.1.7/CorMID/R/CountChemicalElements.R | 4 CorMID-0.1.7/CorMID/R/FitMID.R | 29 - CorMID-0.1.7/CorMID/R/calc_mid_error.R | 15 CorMID-0.1.7/CorMID/R/poss_local.R | 21 CorMID-0.1.7/CorMID/R/prep.R | 13 CorMID-0.1.7/CorMID/R/recMID.R | 2 CorMID-0.1.7/CorMID/R/weight_errors.R | 17 CorMID-0.1.7/CorMID/build/vignette.rds |binary CorMID-0.1.7/CorMID/inst/doc/CorMID.Rmd | 30 - CorMID-0.1.7/CorMID/inst/doc/CorMID.html | 503 ++++++++++++++++++----- CorMID-0.1.7/CorMID/man/CalcTheoreticalMDV.Rd | 16 CorMID-0.1.7/CorMID/man/CorMID.Rd | 14 CorMID-0.1.7/CorMID/man/CountChemicalElements.Rd | 4 CorMID-0.1.7/CorMID/man/prep.Rd | 13 CorMID-0.1.7/CorMID/man/recMID.Rd | 2 CorMID-0.1.7/CorMID/vignettes/CorMID.Rmd | 30 - 25 files changed, 633 insertions(+), 279 deletions(-)
Title: A Tree and Forest Tool for Classification and Regression
Description: Build decision trees and random forests for classification and regression. The implementation strikes a balance between minimizing computing efforts and maximizing the expected predictive accuracy, thus scales well to large data sets. Multi-threading is available through 'OpenMP' <https://gcc.gnu.org/wiki/openmp>.
Author: Yanchao Liu [aut, cre]
Maintainer: Yanchao Liu <yanchaoliu@wayne.edu>
Diff between brif versions 1.1 dated 2022-11-28 and 1.2.0 dated 2022-12-01
DESCRIPTION | 6 MD5 | 16 +- R/RcppExports.R | 8 - R/brif.R | 46 +++--- man/brif.default.Rd | 16 +- man/brif.trainpredict.Rd | 16 +- man/predict.brif.Rd | 4 src/Rcpp_brif.cpp | 8 - src/brif.cpp | 328 ++++++++++++++++++++++++++++------------------- 9 files changed, 259 insertions(+), 189 deletions(-)
Title: Penalized Quantile Regression with Fixed Effects
Description: Quantile regression with fixed effects is a general model for longitudinal data. Here we proposed to solve it by several methods. The estimation methods include three loss functions as check, asymmetric least square and asymmetric Huber functions; and three structures as simple regression, fixed effects and fixed effects with penalized intercepts by LASSO.
Author: Ian Meneghel Danilevicz [aut, cre]
,
Valderio A Reisen [aut],
Pascal Bondon [aut]
Maintainer: Ian Meneghel Danilevicz <iandanilevicz@gmail.com>
Diff between pqrfe versions 1.0 dated 2022-10-20 and 1.1 dated 2022-12-01
DESCRIPTION | 15 MD5 | 12 R/PQRFE_main.R | 1600 +++++++++++++++++++++++++-------------------------- build/partial.rdb |binary inst |only man/pqrfe-package.Rd | 28 src/RcppExports.cpp | 5 tests |only 8 files changed, 824 insertions(+), 836 deletions(-)
Title: Get Executing Script's Path, from 'RStudio', 'Rgui', 'VSCode',
'Rscript' (Shells Including Windows Command-Line / / Unix
Terminal), and 'source'
Description: Determine the full path of the executing script. Works when
running a line or selection from a script in 'RStudio', 'Rgui', and
'VSCode', when using 'source', 'sys.source', 'debugSource' in 'RStudio',
'testthat::source_file', and 'knitr::knit', and when running from a shell.
Author: Andrew Simmons
Maintainer: Andrew Simmons <akwsimmo@gmail.com>
Diff between this.path versions 1.0.1 dated 2022-09-23 and 1.1.0 dated 2022-12-01
this.path-1.0.1/this.path/inst/extdata/README |only this.path-1.0.1/this.path/inst/extdata/r_editor_regexp_not_ucrt.txt |only this.path-1.0.1/this.path/inst/extdata/r_editor_regexp_ucrt.txt |only this.path-1.0.1/this.path/inst/extdata/untitled_not_ucrt.txt |only this.path-1.0.1/this.path/man/this.path-deprecated.Rd |only this.path-1.1.0/this.path/DESCRIPTION | 11 this.path-1.1.0/this.path/MD5 | 116 this.path-1.1.0/this.path/NAMESPACE | 43 this.path-1.1.0/this.path/NEWS | 69 this.path-1.1.0/this.path/R/Args.R | 79 this.path-1.1.0/this.path/R/LINENO.R |only this.path-1.1.0/this.path/R/abspath.R |only this.path-1.1.0/this.path/R/as.relative.path.R | 31 this.path-1.1.0/this.path/R/catfile.R |only this.path-1.1.0/this.path/R/check.path.R | 12 this.path-1.1.0/this.path/R/ext.R |only this.path-1.1.0/this.path/R/from.shell.R |only this.path-1.1.0/this.path/R/hooks-for-namespace-events.R | 12 this.path-1.1.0/this.path/R/path.R |only this.path-1.1.0/this.path/R/promises.R | 153 this.path-1.1.0/this.path/R/rprojroot.R | 7 this.path-1.1.0/this.path/R/this.path.R | 1972 ++++++---- this.path-1.1.0/this.path/R/utils.R | 57 this.path-1.1.0/this.path/R/wrapsource.R |only this.path-1.1.0/this.path/README | 389 - this.path-1.1.0/this.path/build/partial.rdb |binary this.path-1.1.0/this.path/build/this.path.pdf |only this.path-1.1.0/this.path/configure |only this.path-1.1.0/this.path/configure.win |only this.path-1.1.0/this.path/inst/NEWS.Rd | 69 this.path-1.1.0/this.path/inst/extdata/r-editor_not-ucrt.txt |only this.path-1.1.0/this.path/inst/extdata/r-editor_ucrt.txt |only this.path-1.1.0/this.path/inst/extdata/untitled_not-ucrt.txt |only this.path-1.1.0/this.path/man/Args.Rd | 113 this.path-1.1.0/this.path/man/LINENO.Rd |only this.path-1.1.0/this.path/man/OS.type.Rd |only this.path-1.1.0/this.path/man/R.from.shell.Rd | 55 this.path-1.1.0/this.path/man/as.relative.path.Rd | 92 this.path-1.1.0/this.path/man/check.path.Rd | 10 this.path-1.1.0/this.path/man/ext.Rd |only this.path-1.1.0/this.path/man/from.shell.Rd |only this.path-1.1.0/this.path/man/getinitwd.Rd |only this.path-1.1.0/this.path/man/here.Rd | 11 this.path-1.1.0/this.path/man/macros |only this.path-1.1.0/this.path/man/path.join.Rd | 61 this.path-1.1.0/this.path/man/shFILE.Rd | 52 this.path-1.1.0/this.path/man/this.path-defunct.Rd |only this.path-1.1.0/this.path/man/this.path-package.Rd | 46 this.path-1.1.0/this.path/man/this.path.Rd | 123 this.path-1.1.0/this.path/man/this.path.in.VSCode.Rd | 34 this.path-1.1.0/this.path/man/this.proj.Rd | 2 this.path-1.1.0/this.path/man/tryCatch2.Rd | 4 this.path-1.1.0/this.path/man/wrap.source.Rd |only this.path-1.1.0/this.path/src/aquarootscript.c |only this.path-1.1.0/this.path/src/args.c |only this.path-1.1.0/this.path/src/basename2.c | 1117 ++--- this.path-1.1.0/this.path/src/drivewidth.c |only this.path-1.1.0/this.path/src/drivewidth.h |only this.path-1.1.0/this.path/src/ext.c |only this.path-1.1.0/this.path/src/hooks-for-namespace-events.c |only this.path-1.1.0/this.path/src/init.c | 81 this.path-1.1.0/this.path/src/isabspath.c |only this.path-1.1.0/this.path/src/pathjoin.c | 596 --- this.path-1.1.0/this.path/src/promises.c |only this.path-1.1.0/this.path/src/requirethispathhelper.h |only this.path-1.1.0/this.path/src/shfile.c |only this.path-1.1.0/this.path/src/symbols.h |only this.path-1.1.0/this.path/src/this.path.h | 88 this.path-1.1.0/this.path/src/thispath.c |only this.path-1.1.0/this.path/src/thispathdefn.c |only this.path-1.1.0/this.path/src/thispathdefn.h |only this.path-1.1.0/this.path/src/thispathversion.h |only this.path-1.1.0/this.path/src/translations.h |only this.path-1.1.0/this.path/src/wrapsource.c |only this.path-1.1.0/this.path/tests/basename2.tests.R | 2 this.path-1.1.0/this.path/tests/ext.tests.R |only this.path-1.1.0/this.path/tests/faster_subsequent_times.R | 27 this.path-1.1.0/this.path/tests/isclipboard.tests.R |only this.path-1.1.0/this.path/tests/path.join.tests.R | 12 this.path-1.1.0/this.path/tests/this-path-original-na.tests.R |only this.path-1.1.0/this.path/tests/this.path.tests.R | 132 this.path-1.1.0/this.path/tools |only 82 files changed, 3209 insertions(+), 2469 deletions(-)
Title: Conventional and Fuzzy Data Envelopment Analysis
Description: Set of functions for Data Envelopment Analysis. It runs both classic and fuzzy DEA models.See: Banker, R.; Charnes, A.; Cooper, W.W. (1984). <doi:10.1287/mnsc.30.9.1078>, Charnes, A.; Cooper, W.W.; Rhodes, E. (1978). <doi:10.1016/0377-2217(78)90138-8> and Charnes, A.; Cooper, W.W.; Rhodes, E. (1981). <doi:10.1287/mnsc.27.6.668>.
Author: Vicente Coll-Serrano, Vicente Bolos, Rafael Benitez Suarez <rabesua@uv.es>
Maintainer: Vicente Bolos <vicente.bolos@uv.es>
Diff between deaR versions 1.3.1 dated 2022-10-26 and 1.3.2 dated 2022-12-01
DESCRIPTION | 6 MD5 | 210 ++++++++++++++++-------------- NAMESPACE | 5 R/bootstrap_basic.R | 11 - R/cross_efficiency.R | 30 ++-- R/cross_efficiency_fuzzy.R | 10 - R/data_sets.R | 272 ++++++++++++++++++++-------------------- R/eff_dmus.R | 6 R/efficiencies.dea.R | 6 R/efficiencies.dea_fuzzy.R | 6 R/is.friends.R | 6 R/lambdas.R | 6 R/make_deadata.R |only R/make_deadata_fuzzy.R |only R/make_malmquist.R |only R/malmquist_index.R | 8 - R/maximal_friends.R | 6 R/model_additive.R | 19 +- R/model_addsupereff.R | 8 - R/model_basic.R | 26 +-- R/model_deaps.R | 8 - R/model_fdh.R | 14 +- R/model_multiplier.R | 14 +- R/model_nonradial.R | 8 - R/model_profit.R | 20 +- R/model_rdm.R | 2 R/model_sbmeff.R | 16 +- R/model_sbmsupereff.R | 8 - R/model_supereff.R | 14 +- R/modelfuzzy_guotanaka.R | 22 +-- R/modelfuzzy_kaoliu.R | 22 +-- R/modelfuzzy_possibilistic.R | 12 - R/multipliers.R | 6 R/plot.dea.R | 6 R/print.deadata.R |only R/print.deadata_fuzzy.R |only R/read_data.R | 2 R/read_data_fuzzy.R | 2 R/read_malmquist.R | 8 - R/references.R | 7 - R/rts.R | 12 + R/slacks.R | 6 R/summary.dea.R | 19 +- R/summary.deafuzzy.R | 31 ++-- R/targets.R | 6 R/undesirable_basic.R | 22 +-- build/partial.rdb |binary man/Coelli_1998.Rd | 10 - man/Coll_Blasco_2006.Rd | 10 - man/Departments.Rd | 8 - man/Doyle_Green_1994.Rd | 10 - man/Economy.Rd | 4 man/EconomyLong.Rd | 4 man/Electric_plants.Rd | 10 - man/Fortune500.Rd | 10 - man/Fried1993.Rd | 8 - man/FuzzyExample.Rd | 20 +- man/Golany_Roll_1989.Rd | 10 - man/Grifell_Lovell_1999.Rd | 4 man/Guo_Tanaka_2001.Rd | 14 +- man/Hotels.Rd | 10 - man/Hua_Bian_2007.Rd | 10 - man/Kao_Liu_2003.Rd | 14 +- man/Leon2003.Rd | 14 +- man/Libraries.Rd | 22 +-- man/Lim_Zhu_2015.Rd | 10 - man/PFT1981.Rd | 18 +- man/Power_plants.Rd | 14 +- man/Ruggiero2007.Rd | 10 - man/Supply_Chain.Rd | 10 - man/Tone2001.Rd | 8 - man/Tone2003.Rd | 10 - man/bootstrap_basic.Rd | 6 man/cross_efficiency.Rd | 30 ++-- man/cross_efficiency_fuzzy.Rd | 10 - man/eff_dmus.Rd | 6 man/efficiencies.dea.Rd | 6 man/efficiencies.dea_fuzzy.Rd | 6 man/is.friends.Rd | 4 man/lambdas.Rd | 6 man/make_deadata.Rd |only man/make_deadata_fuzzy.Rd |only man/make_malmquist.Rd |only man/malmquist_index.Rd | 6 man/maximal_friends.Rd | 4 man/model_additive.Rd | 17 +- man/model_addsupereff.Rd | 6 man/model_basic.Rd | 22 +-- man/model_deaps.Rd | 6 man/model_fdh.Rd | 12 - man/model_multiplier.Rd | 12 - man/model_nonradial.Rd | 6 man/model_profit.Rd | 18 +- man/model_sbmeff.Rd | 14 +- man/model_sbmsupereff.Rd | 6 man/model_supereff.Rd | 12 - man/modelfuzzy_guotanaka.Rd | 20 +- man/modelfuzzy_kaoliu.Rd | 20 +- man/modelfuzzy_possibilistic.Rd | 10 - man/multipliers.Rd | 6 man/plot.dea.Rd | 6 man/print.deadata.Rd |only man/print.deadata_fuzzy.Rd |only man/read_malmquist.Rd | 3 man/references.Rd | 6 man/rts.Rd | 8 - man/slacks.Rd | 6 man/summary.dea.Rd | 19 +- man/summary.dea_fuzzy.Rd | 25 +-- man/targets.Rd | 6 man/undesirable_basic.Rd | 16 +- 111 files changed, 808 insertions(+), 758 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-08 1.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-15 0.7
2021-12-17 0.6
2021-09-29 0.5