Title: Easily Create Production-Ready Rich Text Format (RTF) Table and
Figure
Description: Create production-ready Rich Text Format (RTF) table and figure
with flexible format.
Author: Yilong Zhang [aut, cre],
Siruo Wang [aut],
Simiao Ye [aut],
Fansen Kong [aut],
Brian Lang [aut],
Nan Xiao [ctb],
Madhusudhan Ginnaram [ctb],
Ruchitbhai Patel [ctb],
Huei-Ling Chen [ctb],
Peikun Wu [ctb],
Uday Preetham Palukuru [ctb],
Daniel Woodie [c [...truncated...]
Maintainer: Yilong Zhang <elong0527@gmail.com>
Diff between r2rtf versions 0.3.5 dated 2022-05-17 and 1.0.0 dated 2023-01-11
r2rtf-0.3.5/r2rtf/man/unicode_latex.Rd |only r2rtf-1.0.0/r2rtf/DESCRIPTION | 31 +- r2rtf-1.0.0/r2rtf/MD5 | 121 +++++---- r2rtf-1.0.0/r2rtf/NAMESPACE | 2 r2rtf-1.0.0/r2rtf/NEWS.md | 9 r2rtf-1.0.0/r2rtf/R/as_rtf_pageby.R | 4 r2rtf-1.0.0/r2rtf/R/as_rtf_paragraph.R | 2 r2rtf-1.0.0/r2rtf/R/as_rtf_table.R | 4 r2rtf-1.0.0/r2rtf/R/assemble.R |only r2rtf-1.0.0/r2rtf/R/check_args.R | 10 r2rtf-1.0.0/r2rtf/R/content_create.R | 23 - r2rtf-1.0.0/r2rtf/R/conversion.R | 5 r2rtf-1.0.0/r2rtf/R/data.R | 16 - r2rtf-1.0.0/r2rtf/R/dictionary.R | 8 r2rtf-1.0.0/r2rtf/R/footnote_source_space.R | 3 r2rtf-1.0.0/r2rtf/R/match_arg.R | 2 r2rtf-1.0.0/r2rtf/R/obj_rtf_border.R | 8 r2rtf-1.0.0/r2rtf/R/obj_rtf_text.R | 3 r2rtf-1.0.0/r2rtf/R/rtf_body.R | 3 r2rtf-1.0.0/r2rtf/R/rtf_by_subline.R | 2 r2rtf-1.0.0/r2rtf/R/rtf_colheader.R | 7 r2rtf-1.0.0/r2rtf/R/rtf_convert_format.R | 45 +-- r2rtf-1.0.0/r2rtf/R/rtf_encode.R | 9 r2rtf-1.0.0/r2rtf/R/rtf_encode_figure.R | 3 r2rtf-1.0.0/r2rtf/R/rtf_encode_list.R | 3 r2rtf-1.0.0/r2rtf/R/rtf_encode_table.R | 3 r2rtf-1.0.0/r2rtf/R/rtf_figure.R | 7 r2rtf-1.0.0/r2rtf/R/rtf_footnote.R | 7 r2rtf-1.0.0/r2rtf/R/rtf_group_by_enhance.R | 2 r2rtf-1.0.0/r2rtf/R/rtf_nrow.R | 4 r2rtf-1.0.0/r2rtf/R/rtf_page.R | 8 r2rtf-1.0.0/r2rtf/R/rtf_pageby.R | 4 r2rtf-1.0.0/r2rtf/R/rtf_paragraph.R | 4 r2rtf-1.0.0/r2rtf/R/rtf_read.R | 12 r2rtf-1.0.0/r2rtf/R/rtf_source.R | 8 r2rtf-1.0.0/r2rtf/R/rtf_strwidth.R | 4 r2rtf-1.0.0/r2rtf/R/rtf_subset.R | 3 r2rtf-1.0.0/r2rtf/R/rtf_table_content.R | 2 r2rtf-1.0.0/r2rtf/R/rtf_text.R | 3 r2rtf-1.0.0/r2rtf/R/rtf_title.R | 16 - r2rtf-1.0.0/r2rtf/R/set_margin.R | 2 r2rtf-1.0.0/r2rtf/R/update_border.R | 2 r2rtf-1.0.0/r2rtf/R/write_rtf.R | 2 r2rtf-1.0.0/r2rtf/R/zzz.R | 2 r2rtf-1.0.0/r2rtf/README.md | 2 r2rtf-1.0.0/r2rtf/build/vignette.rds |binary r2rtf-1.0.0/r2rtf/inst/doc/r2rtf-cran.html | 124 +++++----- r2rtf-1.0.0/r2rtf/man/assemble_docx.Rd |only r2rtf-1.0.0/r2rtf/man/assemble_rtf.Rd |only r2rtf-1.0.0/r2rtf/man/check_args.Rd | 2 r2rtf-1.0.0/r2rtf/man/match_arg.Rd | 5 r2rtf-1.0.0/r2rtf/man/rtf_encode.Rd | 4 r2rtf-1.0.0/r2rtf/man/rtf_read_figure.Rd | 4 r2rtf-1.0.0/r2rtf/tests/testthat/test-developer-testing-rtf_convert_format.R | 1 r2rtf-1.0.0/r2rtf/tests/testthat/test-independent-testing-assemble.R |only r2rtf-1.0.0/r2rtf/tests/testthat/test-independent-testing-check_args.R | 5 r2rtf-1.0.0/r2rtf/tests/testthat/test-independent-testing-rtf_body.R | 5 r2rtf-1.0.0/r2rtf/tests/testthat/test-independent-testing-rtf_nrow.R | 8 r2rtf-1.0.0/r2rtf/tests/testthat/test-independent-testing-rtf_paragraph.R | 102 +++----- r2rtf-1.0.0/r2rtf/tests/testthat/test-independent-testing-rtf_read_figure.R | 6 r2rtf-1.0.0/r2rtf/tests/testthat/test-independent-testing-rtf_subset.R | 1 r2rtf-1.0.0/r2rtf/tests/testthat/test-independent-testing-rtf_table_content.R | 1 r2rtf-1.0.0/r2rtf/tests/testthat/test-independent-testing-rtf_text.R | 60 ++-- r2rtf-1.0.0/r2rtf/tests/testthat/test-independent-testing-update_cellx.R | 13 - 64 files changed, 346 insertions(+), 415 deletions(-)
Title: 'linl' is not 'Letter'
Description: A 'LaTeX' Letter class for 'rmarkdown', using the
'pandoc-letter' template adapted for use with 'markdown'.
Author: Dirk Eddelbuettel and Aaron Wolen
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between linl versions 0.0.4 dated 2019-10-23 and 0.0.5 dated 2023-01-11
ChangeLog | 48 ++ DESCRIPTION | 13 MD5 | 27 - R/linl.R | 15 README.md | 15 build/vignette.rds |binary inst/NEWS.Rd | 9 inst/doc/linl.Rmd | 3 inst/doc/linl.pdf |binary inst/rmarkdown/templates/pdf/resources/template.tex | 4 inst/rmarkdown/templates/pdf/resources/wallpaper.sty |only man/linl.Rd | 5 vignettes/examples/letterfoot.R | 6 vignettes/examples/letterfoot.pdf | 386 +++++++++---------- vignettes/linl.Rmd | 3 15 files changed, 306 insertions(+), 228 deletions(-)
Title: Model Menu for Radiant: Business Analytics using R and Shiny
Description: The Radiant Model menu includes interfaces for linear and logistic
regression, naive Bayes, neural networks, classification and regression trees,
model evaluation, collaborative filtering, decision analysis, and simulation.
The application extends the functionality in 'radiant.data'.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>
Diff between radiant.model versions 1.4.8 dated 2022-09-09 and 1.5.0 dated 2023-01-11
DESCRIPTION | 16 - MD5 | 114 ++++---- NAMESPACE | 11 NEWS.md | 13 R/aaa.R | 11 R/crs.R | 74 +++-- R/crtree.R | 174 ++++++++----- R/dtree.R | 37 +- R/evalbin.R | 102 +++++-- R/evalreg.R | 61 +++- R/gbt.R | 190 ++++++++++---- R/logistic.R | 237 ++++++++++++------ R/mnl.R | 172 +++++++------ R/nb.R | 81 +++--- R/nn.R | 418 +++++++++++--------------------- R/regress.R | 371 +++++++++++++++++++++++----- R/rforest.R | 188 ++++++++------ R/simulater.R | 328 ++++++++++++------------- README.md | 4 inst/app/tools/analysis/crs_ui.R | 16 - inst/app/tools/analysis/crtree_ui.R | 180 +++++++++---- inst/app/tools/analysis/dtree_ui.R | 44 +-- inst/app/tools/analysis/evalbin_ui.R | 30 +- inst/app/tools/analysis/evalreg_ui.R | 7 inst/app/tools/analysis/gbt_ui.R | 127 ++++++--- inst/app/tools/analysis/logistic_ui.R | 150 ++++++++--- inst/app/tools/analysis/mnl_ui.R | 43 +-- inst/app/tools/analysis/naivebayes_ui.R | 47 +-- inst/app/tools/analysis/nn_ui.R | 121 +++++---- inst/app/tools/analysis/regress_ui.R | 151 +++++++---- inst/app/tools/analysis/rforest_ui.R | 140 ++++++---- inst/app/tools/analysis/simulater_ui.R | 64 ++-- inst/app/ui.R | 18 - man/confusion.Rd | 6 man/crs.Rd | 22 + man/crtree.Rd | 6 man/cv.rforest.Rd | 3 man/evalbin.Rd | 6 man/evalreg.Rd | 6 man/gbt.Rd | 6 man/logistic.Rd | 6 man/mnl.Rd | 6 man/nb.Rd | 15 + man/nn.Rd | 6 man/pdp_plot.Rd |only man/plot.crtree.Rd | 7 man/plot.gbt.Rd | 15 + man/plot.logistic.Rd | 3 man/plot.nn.Rd | 8 man/plot.regress.Rd | 5 man/plot.rforest.Rd | 7 man/pred_plot.Rd |only man/regress.Rd | 6 man/repeater.Rd | 4 man/rforest.Rd | 6 man/summary.crs.Rd | 6 man/summary.logistic.Rd | 4 man/varimp.Rd |only man/varimp_plot.Rd |only man/write.coeff.Rd | 3 60 files changed, 2419 insertions(+), 1483 deletions(-)
Title: Parametric G-Formula
Description: Implements the parametric g-formula algorithm of Robins (1986)
<doi:10.1016/0270-0255(86)90088-6>. The g-formula can be used to estimate
the causal effects of hypothetical time-varying treatment interventions on
the mean or risk of an outcome from longitudinal data with time-varying
confounding. This package allows: 1) binary or continuous/multi-level
time-varying treatments; 2) different types of outcomes (survival or
continuous/binary end of follow-up); 3) data with competing events or
truncation by death and loss to follow-up and other types of censoring
events; 4) different options for handling competing events in the case of
survival outcomes; 5) a random measurement/visit process; 6) joint
interventions on multiple treatments; and 7) general incorporation of a
priori knowledge of the data structure.
Author: Victoria Lin [aut] ,
Sean McGrath [aut, cre] ,
Zilu Zhang [aut],
Roger W. Logan [aut],
Lucia C. Petito [aut],
Jessica G. Young [aut] ,
Miguel A. Hernan [aut] ,
2019 The President and Fellows of Harvard College [cph]
Maintainer: Sean McGrath <sean_mcgrath@g.harvard.edu>
Diff between gfoRmula versions 1.0.0 dated 2022-04-09 and 1.0.1 dated 2023-01-11
DESCRIPTION | 8 - MD5 | 34 ++++---- NEWS.md | 16 +++ R/bootstrap.R | 9 +- R/comparisons.R | 23 ++++- R/gformula.R | 165 +++++++++++++++++++++++++++++++---------- R/globals.R | 2 R/helper.R | 36 +++++++- R/restrictions.R | 14 ++- R/simulate.R | 70 ++++++++++++----- man/bootstrap_helper.Rd | 7 + man/carry_forward.Rd | 6 + man/gformula.Rd | 18 +++- man/gformula_binary_eof.Rd | 18 +++- man/gformula_continuous_eof.Rd | 18 +++- man/gformula_survival.Rd | 18 +++- man/simple_restriction.Rd | 4 man/simulate.Rd | 5 + 18 files changed, 350 insertions(+), 121 deletions(-)
Title: A Collection of Functions for Directional Data Analysis
Description: A collection of functions for directional data (including massive data, with millions of observations) analysis. Hypothesis testing, discriminant and regression analysis, MLE of distributions and more are included. The standard textbook for such data is the "Directional Statistics" by Mardia, K. V. and Jupp, P. E. (2000). Other references include a) Phillip J. Paine, Simon P. Preston Michail Tsagris and Andrew T. A. Wood (2018). An elliptically symmetric angular Gaussian distribution. Statistics and Computing 28(3): 689-697. <doi:10.1007/s11222-017-9756-4>. b) Tsagris M. and Alenazi A. (2019). Comparison of discriminant analysis methods on the sphere. Communications in Statistics: Case Studies, Data Analysis and Applications 5(4):467--491. <doi:10.1080/23737484.2019.1684854>. c) P. J. Paine, S. P. Preston, M. Tsagris and Andrew T. A. Wood (2020). Spherical regression models with general covariates and anisotropic errors. Statistics and Computing 30(1): 153--165. <doi:10. [...truncated...]
Author: Michail Tsagris, Giorgos Athineou, Christos Adam, Anamul Sajib, Eli Amson, Micah J. Waldstein
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between Directional versions 5.6 dated 2022-09-22 and 5.7 dated 2023-01-11
DESCRIPTION | 8 - MD5 | 187 ++++++++++++++++++++++++--------------------- NAMESPACE | 11 +- R/bic.mixvmf.R | 18 ++-- R/circ.cors1.R | 6 + R/circ.cors2.R |only R/circpurka.reg.R |only R/dcircexp.R |only R/esag.contour.R |only R/esag.datacontour.R |only R/kent.contour.R | 21 ----- R/kent.datacontour.R | 41 +-------- R/pcircexp.R |only R/pcircpurka.R |only R/purka.da.R |only R/purka.mle.R | 15 ++- R/purkada.pred.R |only R/pvm.R | 12 +- R/rcircexp.R |only R/rcircpurka.R |only R/vm.kde.R | 2 man/Arotation.Rd | 5 - man/Directional-package.Rd | 8 - man/bic.mixvmf.Rd | 12 +- man/circ.cor1.Rd | 4 man/circ.cors1.Rd | 21 +++-- man/circ.summary.Rd | 4 man/circlin.cor.Rd | 4 man/colspml.mle.Rd | 4 man/conc.test.Rd | 4 man/cosap.Rd | 4 man/dirda.cv.Rd | 4 man/dirknn.Rd | 2 man/dirknn.tune.Rd | 3 man/dkent.Rd | 4 man/dvm.Rd | 12 ++ man/dvmf.Rd | 4 man/esag.contour.Rd |only man/esag.da.Rd | 4 man/esag.datacontour.Rd |only man/esag.mle.Rd | 4 man/esagda.pred.Rd | 4 man/etoa.Rd | 2 man/euclid.Rd | 4 man/euclid.inv.Rd | 8 - man/eul2rot.Rd | 4 man/f.rbing.Rd | 4 man/fb.saddle.Rd | 4 man/fishkent.Rd | 2 man/group.gof.Rd | 4 man/group.vm.Rd | 4 man/habeck.rot.Rd | 4 man/hcf.perm.Rd | 2 man/iag.reg.Rd | 4 man/iagesag.Rd | 4 man/kent.datacontour.Rd | 28 +++++- man/kent.logcon.Rd | 4 man/kent.mle.Rd | 4 man/knn.reg.Rd | 4 man/knnreg.tune.Rd | 5 - man/lambert.Rd | 4 man/lambert.inv.Rd | 4 man/makefolds.Rd | 4 man/mediandir.Rd | 4 man/mixvmf.mle.Rd | 4 man/multivm.mle.Rd | 2 man/pcircexp.Rd |only man/pcircpurka.Rd |only man/purka.da.Rd |only man/purka.mle.Rd | 15 ++- man/purkada.pred.Rd |only man/pvm.Rd | 8 - man/quat2rot.Rd | 4 man/rayleigh.Rd | 4 man/rbingham.Rd | 4 man/rfb.Rd | 4 man/rkent.Rd | 4 man/rmixvmf.Rd | 4 man/rot.matrix.Rd | 4 man/rot2eul.Rd | 4 man/rot2quat.Rd | 4 man/rotation.Rd | 4 man/rsop.Rd | 5 - man/rvmf.Rd | 4 man/rvonmises.Rd | 22 ++++- man/spher.cor.Rd | 4 man/spher.reg.Rd | 4 man/spherconc.test.Rd | 4 man/sphereplot.Rd | 5 - man/spml.fbed.Rd | 4 man/spml.mle.Rd | 8 - man/spml.reg.Rd | 15 ++- man/tang.conc.Rd | 4 man/vec.Rd | 5 - man/visual.check.Rd | 4 man/vm.kde.Rd | 4 man/vm.nb.Rd | 2 man/vmf.kde.Rd | 4 man/vmf.kerncontour.Rd | 2 man/vmf.mle.Rd | 3 man/vmfkde.tune.Rd | 4 man/vmkde.tune.Rd | 4 man/vmnb.pred.Rd | 2 103 files changed, 384 insertions(+), 341 deletions(-)
Title: KMunicate-Style Kaplan–Meier Plots
Description: Produce Kaplan–Meier plots in the style recommended
following the KMunicate study by Morris et al. (2019)
<doi:10.1136/bmjopen-2019-030215>. The KMunicate style consists of
Kaplan-Meier curves with confidence intervals to quantify uncertainty
and an extended risk table (per treatment arm) depicting the number of
study subjects at risk, events, and censored observations over time.
The resulting plots are built using 'ggplot2' and can be further
customised to a certain extent, including themes, fonts, and colour
scales.
Author: Alessandro Gasparini [aut, cre, cph]
,
Ary Serpa Neto [ctb]
Maintainer: Alessandro Gasparini <alessandro@ellessenne.xyz>
Diff between KMunicate versions 0.2.2 dated 2022-08-16 and 0.2.3 dated 2023-01-11
DESCRIPTION | 8 ++-- MD5 | 38 ++++++++++----------- NEWS.md | 11 ++++++ R/KMunicate.R | 13 ++++--- README.md | 4 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/KMunicate.R | 9 +++++ inst/doc/KMunicate.Rmd | 12 ++++++ inst/doc/KMunicate.html | 49 ++++++++++++++++++---------- man/KMunicate.Rd | 3 + man/figures/README-brcancer-1.png |binary man/figures/README-brcancer-KMunicate-1.png |binary man/figures/README-brcancer-NULL-1.png |binary man/figures/README-brcancer-reverse-1.png |binary man/figures/README-brcancer-survfit-1.png |binary man/figures/README-cancer-1.png |binary man/figures/README-cancer-single-1.png |binary man/figures/README-cancer-single-ff-1.png |binary vignettes/KMunicate.Rmd | 12 ++++++ 20 files changed, 113 insertions(+), 46 deletions(-)
Title: Data Supporting the 'VGAM' Package
Description: Mainly data sets to accompany the VGAM package and
the book "Vector Generalized Linear and
Additive Models: With an Implementation in R" (Yee, 2015)
<DOI:10.1007/978-1-4939-2818-7>.
These are used to illustrate vector generalized
linear and additive models (VGLMs/VGAMs), and associated models
(Reduced-Rank VGLMs, Quadratic RR-VGLMs, Row-Column
Interaction Models, and constrained and unconstrained ordination
models in ecology). This package now contains some
old VGAM family functions which have been replaced by newer
ones (often because they are now special cases).
Author: Thomas Yee [aut, cre, cph] ,
James Gray [dtc]
Maintainer: Thomas Yee <t.yee@auckland.ac.nz>
Diff between VGAMdata versions 1.1-6 dated 2022-02-14 and 1.1-8 dated 2023-01-11
DESCRIPTION | 11 +-- MD5 | 166 ++++++++++++++++++++++++------------------------ NAMESPACE | 2 NEWS | 9 ++ R/family.fishing.R | 2 R/family.vd1.R | 2 data/SardiniaHotels.rda |binary data/airbnb.ac.rda |binary data/bb.de.rda |binary data/bd.us.rda |binary data/belcap.rda |binary data/covid19.nz.rda |binary data/crashf.au.rda |binary data/crime.us.rda |binary data/ecb06it.rda |binary data/ecb14it.rda |binary data/exam1.rda |binary data/fibre15.rda |binary data/fibre1dot5.rda |binary data/flamingo.rda |binary data/gala.rda |binary data/hued.rda |binary data/huie.rda |binary data/huse.rda |binary data/oly12.rda |binary data/pirates1.rda |binary data/pirates2.rda |binary data/prison.us.rda |binary data/profs.nz.rda |binary data/rainfall.rda |binary data/rar.df.rda |only data/rugby.rda |binary data/rugby.ties.rda |binary data/smqP.rda |only data/students.tw.rda |binary data/trapO.rda |binary data/tube10.rda |binary data/ugss.rda |binary data/vtinpat.rda |binary data/wffc.indiv.rda |binary data/wffc.nc.rda |binary data/wffc.rda |binary data/wffc.teams.rda |binary data/xs.nz.rda |binary man/belcap.Rd | 10 -- man/bellUC.Rd | 9 +- man/bellff.Rd | 13 ++- man/exam1.Rd | 2 man/flamingo.Rd | 2 man/huie.Rd | 4 - man/huse.Rd | 2 man/oalog.Rd | 27 ++++--- man/oalogUC.Rd | 5 - man/oapospoisUC.Rd | 5 - man/oapospoisson.Rd | 50 ++++++++------ man/oazetaUC.Rd | 5 - man/oilog.Rd | 16 ++-- man/oilogUC.Rd | 40 ++++++----- man/oiposbinomUC.Rd | 48 +++++++------ man/oiposbinomial.Rd | 63 +++++++++--------- man/oipospoisUC.Rd | 53 ++++++++------- man/oizeta.Rd | 18 +++-- man/oizetaUC.Rd | 36 +++++----- man/oizipf.Rd | 27 ++++--- man/oizipfUC.Rd | 47 ++++++------- man/otlog.Rd | 17 ++-- man/otlogUC.Rd | 15 ++-- man/otpospoisUC.Rd | 11 +-- man/otpospoisson.Rd | 15 ++-- man/otzeta.Rd | 21 +++--- man/otzetaUC.Rd | 15 ++-- man/posbinomUC.Rd | 40 +++++------ man/posnegbinUC.Rd | 57 ++++++++-------- man/pospoisUC.Rd | 4 - man/rar.df.Rd |only man/smqP.Rd |only man/tikuv.Rd | 41 +++++++---- man/tikuvUC.Rd | 4 - man/ugss.Rd | 22 ++++-- man/wffc.P2star.Rd | 54 +++++++++------ man/wffc.Rd | 149 ++++++++++++++++++++++++++++--------------- man/wffc.indiv.Rd | 30 +++++--- man/wffc.nc.Rd | 22 ++++-- man/wffc.teams.Rd | 18 +++-- man/xs.nz.Rd | 78 +++++++++++++++------- man/yip88.Rd | 76 ++++++++++++++------- 86 files changed, 792 insertions(+), 571 deletions(-)
Title: Efficient Manipulation of Date-Times
Description: Efficient routines for manipulation of date-time objects while
accounting for time-zones and daylight saving times. The package includes
utilities for updating of date-time components (year, month, day etc.),
modification of time-zones, rounding of date-times, period addition and
subtraction etc. Parts of the 'CCTZ' source code, released under the Apache
2.0 License, are included in this package. See
<https://github.com/google/cctz> for more details.
Author: Vitalie Spinu [aut, cre],
Google Inc. [ctb, cph]
Maintainer: Vitalie Spinu <spinuvit@gmail.com>
Diff between timechange versions 0.1.1 dated 2022-11-04 and 0.2.0 dated 2023-01-11
timechange-0.1.1/timechange/tests/testthat/utils.R |only timechange-0.2.0/timechange/DESCRIPTION | 8 timechange-0.2.0/timechange/MD5 | 55 +- timechange-0.2.0/timechange/NEWS.md | 28 + timechange-0.2.0/timechange/R/addition.R | 67 ++- timechange-0.2.0/timechange/R/cpp11.R | 8 timechange-0.2.0/timechange/R/get.R | 2 timechange-0.2.0/timechange/R/package.R | 2 timechange-0.2.0/timechange/R/round.R | 119 +++-- timechange-0.2.0/timechange/R/update.R | 4 timechange-0.2.0/timechange/R/utils.R | 86 ---- timechange-0.2.0/timechange/R/zones.R | 2 timechange-0.2.0/timechange/README.md | 5 timechange-0.2.0/timechange/man/time_add.Rd | 60 ++ timechange-0.2.0/timechange/man/time_round.Rd | 59 +- timechange-0.2.0/timechange/man/time_update.Rd | 19 timechange-0.2.0/timechange/src/common.cpp | 44 +- timechange-0.2.0/timechange/src/common.h | 31 - timechange-0.2.0/timechange/src/cpp11.cpp | 20 timechange-0.2.0/timechange/src/parse.c | 263 ++++--------- timechange-0.2.0/timechange/src/round.cpp | 49 +- timechange-0.2.0/timechange/src/tzone.cpp | 2 timechange-0.2.0/timechange/src/update.cpp | 42 +- timechange-0.2.0/timechange/tests/testthat.R | 8 timechange-0.2.0/timechange/tests/testthat/helpers.R |only timechange-0.2.0/timechange/tests/testthat/test-addition.R | 35 + timechange-0.2.0/timechange/tests/testthat/test-get.R | 10 timechange-0.2.0/timechange/tests/testthat/test-parse.R |only timechange-0.2.0/timechange/tests/testthat/test-round.R | 45 ++ timechange-0.2.0/timechange/tests/testthat/test-update.R | 11 30 files changed, 633 insertions(+), 451 deletions(-)
Title: SHAP Visualizations
Description: Visualizations for SHAP (SHapley Additive exPlanations), such
as waterfall plots, force plots, various types of importance plots,
and dependence plots. These plots act on a 'shapviz' object created
from a matrix of SHAP values and a corresponding feature dataset.
Wrappers for the R packages 'xgboost', 'lightgbm', 'fastshap',
'shapr', 'h2o', 'treeshap', and 'kernelshap' are added for
convenience. By separating visualization and computation, it is
possible to display factor variables in graphs, even if the SHAP
values are calculated by a model that requires numerical features. The
plots are inspired by those provided by the 'shap' package in Python,
but there is no dependency on it.
Author: Michael Mayer [aut, cre]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between shapviz versions 0.4.0 dated 2022-12-09 and 0.4.1 dated 2023-01-11
DESCRIPTION | 6 - MD5 | 22 +++--- NEWS.md | 6 + R/bee.R | 6 - R/sv_importance.R | 52 +++++++++------ README.md | 16 ++-- build/vignette.rds |binary inst/doc/shapviz.Rmd | 16 ++-- inst/doc/shapviz.html | 150 +++++++++++++++++++++----------------------- man/sv_importance.Rd | 15 +++- tests/testthat/test-plots.R | 9 ++ vignettes/shapviz.Rmd | 16 ++-- 12 files changed, 175 insertions(+), 139 deletions(-)
Title: Extended Two-Way Fixed Effects
Description: Convenience functions for implementing extended two-way
fixed effect regressions a la Wooldridge (2021, 2022)
<doi:10.2139/ssrn.3906345>, <doi:10.2139/ssrn.4183726>.
Author: Grant McDermott [aut, cre]
Maintainer: Grant McDermott <grantmcd@uoregon.edu>
Diff between etwfe versions 0.1.0 dated 2022-12-14 and 0.2.0 dated 2023-01-11
DESCRIPTION | 10 MD5 | 30 +- NEWS.md | 27 ++ R/emfx.R | 16 + R/etwfe.R | 33 +- README.md | 41 ++- build/vignette.rds |binary inst/doc/etwfe.R | 55 +++- inst/doc/etwfe.Rmd | 135 ++++++++--- inst/doc/etwfe.html | 529 ++++++++++++++++++++++++++++++++------------- inst/tinytest/test_baker.R | 10 inst/tinytest/test_emfx.R | 74 +++++- inst/tinytest/test_etwfe.R | 51 ++++ man/emfx.Rd | 17 + man/etwfe.Rd | 16 - vignettes/etwfe.Rmd | 135 ++++++++--- 16 files changed, 880 insertions(+), 299 deletions(-)
Title: Statistical Inference for Partially Observed Markov Processes
Description: Tools for data analysis with partially observed Markov process (POMP) models (also known as stochastic dynamical systems, hidden Markov models, and nonlinear, non-Gaussian, state-space models). The package provides facilities for implementing POMP models, simulating them, and fitting them to time series data by a variety of frequentist and Bayesian methods. It is also a versatile platform for implementation of inference methods for general POMP models.
Author: Aaron A. King [aut, cre],
Edward L. Ionides [aut],
Carles Breto [aut],
Stephen P. Ellner [ctb],
Matthew J. Ferrari [ctb],
Sebastian Funk [ctb],
Steven G. Johnson [ctb],
Bruce E. Kendall [ctb],
Michael Lavine [ctb],
Dao Nguyen [ctb],
Eamon B. O'Dea [c [...truncated...]
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between pomp versions 4.5 dated 2022-12-20 and 4.6 dated 2023-01-11
pomp-4.5/pomp/R/pipe.R |only pomp-4.5/pomp/man/pipe.Rd |only pomp-4.6/pomp/DESCRIPTION | 44 +++--- pomp-4.6/pomp/MD5 | 226 +++++++++++++++++------------------ pomp-4.6/pomp/NAMESPACE | 42 ++++-- pomp-4.6/pomp/R/aaa.R |only pomp-4.6/pomp/R/abc.R | 6 pomp-4.6/pomp/R/as_data_frame.R | 59 +++------ pomp-4.6/pomp/R/as_pomp.R | 6 pomp-4.6/pomp/R/basic_probes.R | 54 ++++---- pomp-4.6/pomp/R/bsmc2.R | 6 pomp-4.6/pomp/R/bsplines.R | 21 +-- pomp-4.6/pomp/R/builder.R | 13 +- pomp-4.6/pomp/R/cond_logLik.R | 85 ++++++++++--- pomp-4.6/pomp/R/csnippet.R | 1 pomp-4.6/pomp/R/dacca.R | 2 pomp-4.6/pomp/R/deprecated.R |only pomp-4.6/pomp/R/ebola.R | 42 +++--- pomp-4.6/pomp/R/eff_sample_size.R | 63 +++++++-- pomp-4.6/pomp/R/filter_mean.R | 47 ++++--- pomp-4.6/pomp/R/filter_traj.R | 54 ++++---- pomp-4.6/pomp/R/forecast.R | 34 +++-- pomp-4.6/pomp/R/gompertz.R | 6 pomp-4.6/pomp/R/listie.R | 12 - pomp-4.6/pomp/R/logmeanexp.R | 45 ++++-- pomp-4.6/pomp/R/melt.R | 79 +++++++++--- pomp-4.6/pomp/R/mif2.R | 8 - pomp-4.6/pomp/R/nlf.R | 4 pomp-4.6/pomp/R/obs.R | 17 ++ pomp-4.6/pomp/R/ou2.R | 6 pomp-4.6/pomp/R/pfilter.R | 31 ++-- pomp-4.6/pomp/R/plot.R | 16 +- pomp-4.6/pomp/R/pmcmc.R | 28 +++- pomp-4.6/pomp/R/pomp.R | 4 pomp-4.6/pomp/R/pred_mean.R | 48 ++++--- pomp-4.6/pomp/R/pred_var.R | 34 +++-- pomp-4.6/pomp/R/probe.R | 4 pomp-4.6/pomp/R/proposals.R | 14 +- pomp-4.6/pomp/R/rprocess_spec.R | 8 - pomp-4.6/pomp/R/saved_states.R | 47 ++++--- pomp-4.6/pomp/R/sir.R | 4 pomp-4.6/pomp/R/slice_design.R | 2 pomp-4.6/pomp/R/sobol_design.R | 2 pomp-4.6/pomp/R/spect.R | 4 pomp-4.6/pomp/R/spect_match.R | 17 +- pomp-4.6/pomp/R/spy.R | 2 pomp-4.6/pomp/R/states.R | 17 ++ pomp-4.6/pomp/R/templates.R | 4 pomp-4.6/pomp/R/verhulst.R | 5 pomp-4.6/pomp/R/wpfilter.R | 4 pomp-4.6/pomp/inst/NEWS | 44 ++++++ pomp-4.6/pomp/inst/NEWS.Rd | 21 +++ pomp-4.6/pomp/inst/doc/index.html | 1 pomp-4.6/pomp/inst/include/pomp.h | 18 +- pomp-4.6/pomp/man/accumulators.Rd | 20 +-- pomp-4.6/pomp/man/as_pomp.Rd | 6 pomp-4.6/pomp/man/basic_probes.Rd | 44 +++--- pomp-4.6/pomp/man/bsflu.Rd | 4 pomp-4.6/pomp/man/bsmc2.Rd | 14 +- pomp-4.6/pomp/man/bsplines.Rd | 21 +-- pomp-4.6/pomp/man/coef.Rd | 14 +- pomp-4.6/pomp/man/cond_logLik.Rd | 57 ++++---- pomp-4.6/pomp/man/covmat.Rd | 14 +- pomp-4.6/pomp/man/dmeasure_spec.Rd | 4 pomp-4.6/pomp/man/ebola.Rd | 8 - pomp-4.6/pomp/man/eff_sample_size.Rd | 46 +++---- pomp-4.6/pomp/man/filter_mean.Rd | 42 +++--- pomp-4.6/pomp/man/filter_traj.Rd | 52 ++++---- pomp-4.6/pomp/man/forecast.Rd | 20 +-- pomp-4.6/pomp/man/gompertz.Rd | 2 pomp-4.6/pomp/man/kalman.Rd | 14 +- pomp-4.6/pomp/man/kf.Rd | 12 - pomp-4.6/pomp/man/loglik.Rd | 14 +- pomp-4.6/pomp/man/logmeanexp.Rd | 12 + pomp-4.6/pomp/man/melt.Rd | 48 +++---- pomp-4.6/pomp/man/mif2.Rd | 14 +- pomp-4.6/pomp/man/nlf.Rd | 2 pomp-4.6/pomp/man/obs.Rd | 16 +- pomp-4.6/pomp/man/ou2.Rd | 6 pomp-4.6/pomp/man/parameter_trans.Rd | 2 pomp-4.6/pomp/man/parus.Rd | 6 pomp-4.6/pomp/man/pfilter.Rd | 38 ++--- pomp-4.6/pomp/man/pmcmc.Rd | 14 +- pomp-4.6/pomp/man/pomp-deprecated.Rd |only pomp-4.6/pomp/man/pred_mean.Rd | 42 +++--- pomp-4.6/pomp/man/pred_var.Rd | 38 +++-- pomp-4.6/pomp/man/prior_spec.Rd | 10 - pomp-4.6/pomp/man/probe_match.Rd | 24 +-- pomp-4.6/pomp/man/proposals.Rd | 12 - pomp-4.6/pomp/man/ricker.Rd | 2 pomp-4.6/pomp/man/rinit_spec.Rd | 4 pomp-4.6/pomp/man/rmeasure_spec.Rd | 4 pomp-4.6/pomp/man/rw2.Rd | 6 pomp-4.6/pomp/man/rw_sd.Rd | 8 - pomp-4.6/pomp/man/saved_states.Rd | 42 +++--- pomp-4.6/pomp/man/sir.Rd | 2 pomp-4.6/pomp/man/skeleton_spec.Rd | 6 pomp-4.6/pomp/man/spect_match.Rd | 8 - pomp-4.6/pomp/man/spy.Rd | 14 +- pomp-4.6/pomp/man/states.Rd | 16 +- pomp-4.6/pomp/man/summary.Rd | 14 +- pomp-4.6/pomp/man/time.Rd | 14 +- pomp-4.6/pomp/man/timezero.Rd | 14 +- pomp-4.6/pomp/man/traces.Rd | 14 +- pomp-4.6/pomp/man/traj_match.Rd | 6 pomp-4.6/pomp/man/verhulst.Rd | 5 pomp-4.6/pomp/man/wpfilter.Rd | 18 +- pomp-4.6/pomp/src/bspline.c | 37 ++--- pomp-4.6/pomp/src/distributions.c | 20 +-- pomp-4.6/pomp/src/euler.c | 126 ++++++++----------- pomp-4.6/pomp/src/gompertz.c | 14 +- pomp-4.6/pomp/src/init.c | 2 pomp-4.6/pomp/src/logmeanexp.c |only pomp-4.6/pomp/src/ou2.c | 2 pomp-4.6/pomp/src/pomp.h | 18 +- pomp-4.6/pomp/src/pomp_decls.h | 16 +- pomp-4.6/pomp/src/pomp_fun.c | 28 +--- 117 files changed, 1433 insertions(+), 1080 deletions(-)
Title: Kernel SHAP
Description: Multidimensional refinement of the Kernel SHAP algorithm
described in Ian Covert and Su-In Lee (2021)
<http://proceedings.mlr.press/v130/covert21a>. The package allows to
calculate Kernel SHAP values in an exact way, by iterative sampling
(as in the reference above), or by a hybrid of the two. As soon as
sampling is involved, the algorithm iterates until convergence, and
standard errors are provided. The package works with any model that
provides numeric predictions of dimension one or higher. Examples
include linear regression, logistic regression (on logit or
probability scale), other generalized linear models, generalized
additive models, and neural networks. The package plays well together
with meta-learning packages like 'tidymodels', 'caret' or 'mlr3'.
Visualizations can be done using the R package 'shapviz'.
Author: Michael Mayer [aut, cre],
David Watson [ctb]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between kernelshap versions 0.3.2 dated 2022-12-17 and 0.3.3 dated 2023-01-11
DESCRIPTION | 8 MD5 | 24 NAMESPACE | 2 NEWS.md | 7 R/kernelshap.R | 4 R/utils.R | 28 README.md | 126 + man/figures/README-lm-dep.svg | 2600 ++++++++++++++++---------------- man/figures/README-lm-imp.svg | 446 ++--- man/figures/README-lm-waterfall.svg | 714 ++++----- man/figures/README-nn-dep.svg | 2848 ++++++++++++++++++------------------ man/figures/README-nn-imp.svg | 526 +++--- man/figures/README-rf-dep.svg | 2718 +++++++++++++++++----------------- 13 files changed, 5084 insertions(+), 4967 deletions(-)
Title: Rendering Parameterized SQL and Translation to Dialects
Description: A rendering tool for parameterized SQL that also translates into
different SQL dialects. These dialects include 'Microsoft SQL Server', 'Oracle',
'PostgreSql', 'Amazon RedShift', 'Apache Impala', 'IBM Netezza', 'Google BigQuery', 'Microsoft PDW', 'Snowflake',
'Azure Synapse Analytics Dedicated', 'Apache Spark', and 'SQLite'.
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between SqlRender versions 1.11.0 dated 2022-12-02 and 1.11.1 dated 2023-01-11
DESCRIPTION | 10 +-- MD5 | 72 ++++++++++++------------ NEWS.md | 14 ++++ R/HelperFunctions.R | 2 R/RenderSql.R | 18 +++++- R/ShinyApps.R | 2 R/SparkSql.R | 2 R/SqlRender.R | 2 README.md | 2 inst/csv/replacementPatterns.csv | 7 +- inst/doc/UsingSqlRender.pdf |binary java/org/ohdsi/sql/BigQuerySparkTranslate.java | 2 java/org/ohdsi/sql/JarChecksum.java | 2 java/org/ohdsi/sql/MainClass.java | 2 java/org/ohdsi/sql/SqlRender.java | 2 java/org/ohdsi/sql/SqlSplit.java | 2 java/org/ohdsi/sql/SqlTranslate.java | 2 java/org/ohdsi/sql/StringUtils.java | 2 man/SqlRender-package.Rd | 2 man/translate.Rd | 2 tests/testthat/test-helperFunctions.R | 8 +- tests/testthat/test-translate-bigquery.R | 7 +- tests/testthat/test-translate-duckdb.R | 2 tests/testthat/test-translate-hive.R | 2 tests/testthat/test-translate-impala.R | 2 tests/testthat/test-translate-netezza.R | 2 tests/testthat/test-translate-oracle.R | 2 tests/testthat/test-translate-pdw.R | 2 tests/testthat/test-translate-postgresql.R | 2 tests/testthat/test-translate-redshift.R | 2 tests/testthat/test-translate-snowflake.R | 2 tests/testthat/test-translate-spark.R | 2 tests/testthat/test-translate-sql_server.R | 2 tests/testthat/test-translate-sqlite-extended.R | 2 tests/testthat/test-translate-sqlite.R | 17 +++++ tests/testthat/test-translate-synapse.R | 2 tests/testthat/test-translateSql.R | 14 ++++ 37 files changed, 141 insertions(+), 80 deletions(-)
Title: Outlier Robust Two-Stage Least Squares Inference and Testing
Description: An implementation of easy tools for outlier robust inference in
two-stage least squares (2SLS) models. The user specifies a reference
distribution against which observations are classified as outliers or not.
After removing the outliers, adjusted standard errors are automatically
provided. Furthermore, several statistical tests for the false outlier
detection rate can be calculated. The outlier removing algorithm can be
iterated a fixed number of times or until the procedure converges. The
algorithms and robust inference are described in more detail in Jiao (2019)
<https://drive.google.com/file/d/1qPxDJnLlzLqdk94X9wwVASptf1MPpI2w/view>.
Author: Jonas Kurle [aut, cre]
Maintainer: Jonas Kurle <mail@jonaskurle.com>
Diff between robust2sls versions 0.2.1 dated 2022-08-15 and 0.2.2 dated 2023-01-11
DESCRIPTION | 10 MD5 | 22 NAMESPACE | 1 NEWS.md | 12 R/monte_carlo.R | 10 build/robust2sls.pdf |binary inst/doc/monte-carlo.html | 111 +-- inst/doc/outlier-testing.html | 111 +-- inst/doc/overview.html | 111 +-- man/mc_grid.Rd | 3 tests/testthat/_snaps/utility.md | 1306 +++++++++++++++++++-------------------- tests/testthat/test-utility.R | 12 12 files changed, 864 insertions(+), 845 deletions(-)
Title: Paws Low-Level Amazon Web Services API
Description: Functions for making low-level API requests to Amazon Web Services
<https://aws.amazon.com>. The functions handle building, signing, and
sending requests, and receiving responses. They are designed to help build
higher-level interfaces to individual services, such as Simple Storage
Service (S3).
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.common versions 0.5.3 dated 2022-12-06 and 0.5.4 dated 2023-01-11
DESCRIPTION | 12 ++-- MD5 | 10 ++- NEWS.md | 3 + R/signer_query.R |only R/signer_v4.R | 54 +++++++++----------- R/util.R | 98 +++++++++++++++++++++++++++++++++++++ tests/testthat/test_signer_query.R |only 7 files changed, 139 insertions(+), 38 deletions(-)
Title: Generate Publication Ready Visualizations of Single Cell
Transcriptomics Data
Description: A system that provides a streamlined way of generating publication ready plots for known Single-Cell transcriptomics data in a “publication ready” format. This is, the goal is to automatically generate plots with the highest quality possible, that can be used right away or with minimal modifications for a research article.
Author: Enrique Blanco-Carmona [cre, aut]
Maintainer: Enrique Blanco-Carmona <scpubr@gmail.com>
Diff between SCpubr versions 1.0.4 dated 2022-11-07 and 1.1.0 dated 2023-01-11
DESCRIPTION | 16 MD5 | 148 +- NAMESPACE | 5 NEWS.md | 70 + R/do_AlluvialPlot.R |only R/do_AzimuthAnalysisPlot.R |only R/do_BarPlot.R | 54 - R/do_BeeSwarmPlot.R | 99 + R/do_BoxPlot.R | 2 R/do_CellularStatesPlot.R | 25 R/do_ColorPalette.R | 2 R/do_CopyNumberVariantPlot.R | 37 R/do_CorrelationPlot.R | 14 R/do_DimPlot.R | 182 +-- R/do_DotPlot.R | 4 R/do_EnrichmentHeatmap.R | 337 ++++-- R/do_ExpressionHeatmap.R |only R/do_FeaturePlot.R | 72 + R/do_FunctionalAnnotationPlot.R |only R/do_GeyserPlot.R | 35 R/do_GroupedGOTermPlot.R |only R/do_GroupwiseDEPlot.R | 14 R/do_NebulosaPlot.R | 4 R/do_PathwayActivityPlot.R | 23 R/do_RidgePlot.R | 42 R/do_TFActivityPlot.R | 23 R/do_TermEnrichmentPlot.R | 4 R/do_ViolinPlot.R | 70 - R/do_VolcanoPlot.R | 12 R/globals.R | 6 R/utils.R | 1012 +++++++++++++++++++- R/zzz.R | 1 README.md | 5 inst/extdata/seurat_dataset_example.rds |binary man/do_AlluvialPlot.Rd |only man/do_AzimuthAnalysisPlot.Rd |only man/do_BarPlot.Rd | 15 man/do_BeeSwarmPlot.Rd | 30 man/do_BoxPlot.Rd | 2 man/do_CellularStatesPlot.Rd | 4 man/do_CopyNumberVariantPlot.Rd | 4 man/do_CorrelationPlot.Rd | 9 man/do_DimPlot.Rd | 16 man/do_DotPlot.Rd | 4 man/do_EnrichmentHeatmap.Rd | 52 - man/do_ExpressionHeatmap.Rd |only man/do_FeaturePlot.Rd | 15 man/do_FunctionalAnnotationPlot.Rd |only man/do_GeyserPlot.Rd | 8 man/do_GroupedGOTermPlot.Rd |only man/do_GroupwiseDEPlot.Rd | 2 man/do_NebulosaPlot.Rd | 4 man/do_PathwayActivityPlot.Rd | 10 man/do_RidgePlot.Rd | 13 man/do_TFActivityPlot.Rd | 10 man/do_TermEnrichmentPlot.Rd | 4 man/do_ViolinPlot.Rd | 10 man/do_VolcanoPlot.Rd | 2 man/doc_function.Rd | 29 man/examples/examples_do_AlluvialPlot.R |only man/examples/examples_do_AzimuthAnalysisPlot.R |only man/examples/examples_do_ExpressionHeatmap.R |only man/examples/examples_do_FunctionalAnnotationPlot.R |only man/examples/examples_do_GroupedGOTermPlot.R |only tests/testthat/setup.R | 37 tests/testthat/test-do_AlluvialPlot.R |only tests/testthat/test-do_AzimuthAnalysisPlot.R |only tests/testthat/test-do_BarPlot.R | 107 ++ tests/testthat/test-do_BeeSwarmPlot.R | 98 + tests/testthat/test-do_CellularStatesPlot.R | 20 tests/testthat/test-do_CopyNumberVariantPlot.R | 12 tests/testthat/test-do_DimPlot.R | 164 +++ tests/testthat/test-do_EnrichmentHeatmap.R | 242 ++++ tests/testthat/test-do_ExpressionHeatmap.R |only tests/testthat/test-do_FeaturePlot.R | 138 ++ tests/testthat/test-do_FunctionalAnnotationPlot.R |only tests/testthat/test-do_GeyserPlot.R | 108 ++ tests/testthat/test-do_GroupedGOTermPlot.R |only tests/testthat/test-do_GroupwiseDEPlot.R | 64 + tests/testthat/test-do_PathwayActivityPlot.R | 118 ++ tests/testthat/test-do_RidgePlot.R | 15 tests/testthat/test-do_TFActivityPlot.R | 132 ++ tests/testthat/test-do_ViolinPlot.R | 74 + tests/testthat/test-do_VolcanoPlot.R | 2 tests/testthat/test-utils.R | 53 - 85 files changed, 3360 insertions(+), 585 deletions(-)
Title: R Bindings to the Calendaring Functionality of 'QuantLib'
Description: 'QuantLib' bindings are provided for R using 'Rcpp' via an evolved version
of the initial header-only 'Quantuccia' project offering an subset of 'QuantLib' (now
maintained separately just for the calendaring subset). See the included file 'AUTHORS'
for a full list of contributors to 'QuantLib' (and hence also 'Quantuccia').
Author: Dirk Eddelbuettel; the authors and contributors of QuantLib
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between qlcal versions 0.0.3 dated 2022-10-19 and 0.0.4 dated 2023-01-11
ChangeLog | 43 +++++++++++++++++++++++++++++++ DESCRIPTION | 8 ++--- MD5 | 42 +++++++++++++++--------------- R/RcppExports.R | 15 +++++++++- build/partial.rdb |binary inst/NEWS.Rd | 9 ++++++ inst/include/qlcal_RcppExports.h | 9 +++--- inst/include/qlcal_declarations.h | 2 + man/advanceDate.Rd | 19 +++++++++++++ src/RcppExports.cpp | 19 ++++++++----- src/dates.cpp | 18 +++++++++++-- src/ql/time/calendars/argentina.cpp | 1 src/ql/time/calendars/australia.cpp | 4 ++ src/ql/time/calendars/australia.hpp | 1 src/ql/time/calendars/china.cpp | 20 ++++++++++++-- src/ql/time/calendars/southafrica.cpp | 2 + src/ql/time/calendars/southafrica.hpp | 3 ++ src/ql/time/calendars/unitedkingdom.cpp | 2 + src/ql/time/calendars/unitedkingdom.hpp | 3 ++ src/ql/time/calendars/unitedstates.hpp | 7 ----- src/utils.cpp | 44 ++++++++++++++++++++++++++++++-- tests/calendars.R | 4 ++ 22 files changed, 220 insertions(+), 55 deletions(-)
Title: Synthesizing Causal Evidence in a Distributed Research Network
Description: Routines for combining causal effect estimates and study diagnostics across multiple data sites in a distributed study, without sharing patient-level data.
Allows for normal and non-normal approximations of the data-site likelihood of the effect parameter.
Author: Martijn Schuemie [aut, cre],
Marc A. Suchard [aut],
Observational Health Data Science and Informatics [cph]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between EvidenceSynthesis versions 0.3.0 dated 2022-09-09 and 0.4.0 dated 2023-01-11
DESCRIPTION | 10 MD5 | 86 ++--- NAMESPACE | 1 NEWS.md | 10 R/BayesianMetaAnalysis.R | 155 +-------- R/BayesianSynthesis.R | 2 R/CohortMethod.R | 2 R/EmpiricalCalibration.R | 2 R/EvidenceSynthesis.R | 2 R/FixedEffectMetaAnalysis.R | 119 ++++--- R/LikelihoodApproximation.R | 176 ++++++++++- R/MetaAnalysis.R | 145 ++++++--- R/Plots.R | 125 +++---- R/Simulation.R | 2 R/Utilities.R | 13 README.md | 2 build/vignette.rds |binary inst/doc/NonNormalEffectSynthesis.R | 32 +- inst/doc/NonNormalEffectSynthesis.Rmd | 47 +- inst/doc/NonNormalEffectSynthesis.pdf |binary java/org/ohdsi/data/CoxData.java | 2 java/org/ohdsi/data/SortedCoxData.java | 2 java/org/ohdsi/likelihood/CoxPartialLikelihood.java | 2 java/org/ohdsi/mcmc/Analysis.java | 2 java/org/ohdsi/mcmc/Runner.java | 2 java/org/ohdsi/metaAnalysis/CoxDataModel.java | 2 java/org/ohdsi/metaAnalysis/DataModel.java | 2 java/org/ohdsi/metaAnalysis/EmpiricalDataModel.java | 2 java/org/ohdsi/metaAnalysis/ExtendingEmpiricalDataModel.java | 2 java/org/ohdsi/metaAnalysis/GammaOnPrecisionPrior.java | 2 java/org/ohdsi/metaAnalysis/HalfCauchyOnStdDevPrior.java | 2 java/org/ohdsi/metaAnalysis/HalfNormalOnStdDevPrior.java | 2 java/org/ohdsi/metaAnalysis/JointAnalysis.java | 2 java/org/ohdsi/metaAnalysis/MetaAnalysis.java | 2 java/org/ohdsi/metaAnalysis/NormalDataModel.java | 2 java/org/ohdsi/metaAnalysis/ParametricDataModel.java | 2 java/org/ohdsi/metaAnalysis/RobustMetaAnalysis.java | 2 java/org/ohdsi/metaAnalysis/ScalePrior.java | 2 java/org/ohdsi/metaAnalysis/SkewNormalDataModel.java | 2 man/detectApproximationType.Rd |only man/plotMetaAnalysisForest.Rd | 3 tests/testthat/Rplots.pdf |only tests/testthat/test-nonNormalMetaAnalysis.R | 21 + tests/testthat/test-plots.R | 8 vignettes/NonNormalEffectSynthesis.Rmd | 47 +- 45 files changed, 632 insertions(+), 416 deletions(-)
More information about EvidenceSynthesis at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-19 1.0.0
Title: Taxonomic Name Resolution Service
Description: Provides access to the Taxonomic Name Resolution Service <https://github.com/ojalaquellueva/tnrsapi> through R. The user supplies plant taxonomic names and the package returns resolved taxonomic names along with information on decisions. Optionally, the package can also be used to parse taxonomic names.
Author: Brian Maitner [aut, cre] ,
Brad Boyle [aut],
Paul Efren [ctb]
Maintainer: Brian Maitner <bmaitner@gmail.com>
Diff between TNRS versions 0.3.2 dated 2023-01-09 and 0.3.3 dated 2023-01-11
DESCRIPTION | 6 ++--- MD5 | 12 +++++----- NEWS | 20 +++++++++++++++++ R/TNRS_citations.R | 12 +++++----- R/TNRS_metadata.R | 47 ++++++++++++++++++++++++++-------------- inst/doc/TNRS_vignette.html | 4 +-- inst/doc/TNRS_vignette_spa.html | 4 +-- 7 files changed, 71 insertions(+), 34 deletions(-)
Title: Access and Analyze eBird Status and Trends Data
Description: Tools to download, load, plot, and analyze eBird Status and
Trends Data Products
(<https://science.ebird.org/en/status-and-trends>). eBird
(<https://ebird.org/home>) is a global database of bird observations
collected by member of the public. eBird Status and Trends uses these
data to model global bird abundances, range boundaries, and habitat
associations at a high spatial and temporal resolution.
Author: Matthew Strimas-Mackey [aut, cre]
,
Shawn Ligocki [aut],
Tom Auer [aut] ,
Daniel Fink [aut] ,
Cornell Lab of Ornithology [cph]
Maintainer: Matthew Strimas-Mackey <mes335@cornell.edu>
Diff between ebirdst versions 1.2021.2 dated 2023-01-06 and 1.2021.3 dated 2023-01-11
DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ NEWS.md | 4 ++++ R/download.R | 2 +- R/load.R | 16 ++++++++++++---- inst/doc/ebirdst.html | 4 ++-- inst/doc/rasters.html | 4 ++-- tests/testthat/test_download.R |only 8 files changed, 31 insertions(+), 18 deletions(-)
Title: Single Trial Analysis (STA) of Field Trials
Description: Phenotypic analysis of field trials using mixed models with and
without spatial components. One of a series of statistical genetic packages
for streamlining the analysis of typical plant breeding experiments developed
by Biometris.
Some functions have been created to be used in conjunction with the R
package 'asreml' for the 'ASReml' software, which can be obtained upon
purchase from 'VSN' international (<https://vsni.co.uk/software/asreml-r>).
Author: Bart-Jan van Rossum [aut, cre]
,
Fred van Eeuwijk [ctb] ,
Martin Boer [ctb] ,
Marcos Malosetti [ctb] ,
Daniela Bustos-Korts [ctb] ,
Emilie J. Millet [ctb] ,
Joao Paulo [ctb] ,
Maikel Verouden [ctb] ,
Willem Kruijer [ctb] ,
Ron Wehrens [ctb] ,
Choazhi [...truncated...]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>
Diff between statgenSTA versions 1.0.10 dated 2022-12-01 and 1.0.11 dated 2023-01-11
statgenSTA-1.0.10/statgenSTA/R/createExtract.R |only statgenSTA-1.0.10/statgenSTA/R/extract.R |only statgenSTA-1.0.10/statgenSTA/man/as.data.frame.extract.Rd |only statgenSTA-1.0.10/statgenSTA/man/extract.Rd |only statgenSTA-1.0.11/statgenSTA/DESCRIPTION | 14 +- statgenSTA-1.0.11/statgenSTA/MD5 | 48 +++----- statgenSTA-1.0.11/statgenSTA/NAMESPACE | 3 statgenSTA-1.0.11/statgenSTA/NEWS.md | 6 + statgenSTA-1.0.11/statgenSTA/R/boxPlot.R | 5 statgenSTA-1.0.11/statgenSTA/R/corPlot.R | 7 - statgenSTA-1.0.11/statgenSTA/R/createSTA.R | 20 +-- statgenSTA-1.0.11/statgenSTA/R/extractSTA.R | 2 statgenSTA-1.0.11/statgenSTA/R/layoutPlot.R | 57 +++++----- statgenSTA-1.0.11/statgenSTA/R/mapPlot.R | 13 +- statgenSTA-1.0.11/statgenSTA/R/scatterPlot.R | 21 +-- statgenSTA-1.0.11/statgenSTA/R/statgenSTA.R | 6 + statgenSTA-1.0.11/statgenSTA/R/sysdata.rda |binary statgenSTA-1.0.11/statgenSTA/README.md | 8 - statgenSTA-1.0.11/statgenSTA/data/TDHeat05.rda |binary statgenSTA-1.0.11/statgenSTA/data/TDMaize.rda |binary statgenSTA-1.0.11/statgenSTA/inst/data-raw/extractOptions.csv | 2 statgenSTA-1.0.11/statgenSTA/inst/doc/statgenSTA.html | 44 +++---- statgenSTA-1.0.11/statgenSTA/man/figures/README-layoutPlot-1.png |binary statgenSTA-1.0.11/statgenSTA/man/figures/README-mapPlot-1.png |binary statgenSTA-1.0.11/statgenSTA/tests/testthat/Rplots.pdf |binary statgenSTA-1.0.11/statgenSTA/tests/testthat/test-boxPlot.R | 5 statgenSTA-1.0.11/statgenSTA/tests/testthat/test-layoutPlot.R | 6 - 27 files changed, 140 insertions(+), 127 deletions(-)
Title: Processing of Model Parameters
Description: Utilities for processing the parameters of various
statistical models. Beyond computing p values, CIs, and other indices
for a wide variety of models (see list of supported models using the
function 'insight::supported_models()'), this package implements
features like bootstrapping or simulating of parameters and models,
feature reduction (feature extraction and variable selection) as well
as functions to describe data and variable characteristics (e.g.
skewness, kurtosis, smoothness or distribution).
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Soeren Hoejsgaard [aut],
Brenton M. Wiernik [aut] ,
Zen J. Lau [ctb],
Vincent Arel-Bundock [ctb] ,
Jeffrey Girard [ctb] ,
Christina Maimone [re [...truncated...]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between parameters versions 0.20.0 dated 2022-11-21 and 0.20.1 dated 2023-01-11
parameters-0.20.0/parameters/tests/testthat/_snaps/glmmTMB.md |only parameters-0.20.0/parameters/tests/testthat/helper-requiet.R |only parameters-0.20.1/parameters/DESCRIPTION | 24 parameters-0.20.1/parameters/MD5 | 389 ++-- parameters-0.20.1/parameters/NAMESPACE | 31 parameters-0.20.1/parameters/NEWS.md | 22 parameters-0.20.1/parameters/R/5_simulate_model.R | 9 parameters-0.20.1/parameters/R/bootstrap_model.R | 2 parameters-0.20.1/parameters/R/bootstrap_parameters.R | 2 parameters-0.20.1/parameters/R/ci_kenward.R | 2 parameters-0.20.1/parameters/R/ci_profile_boot.R | 4 parameters-0.20.1/parameters/R/cluster_analysis.R | 14 parameters-0.20.1/parameters/R/cluster_meta.R | 2 parameters-0.20.1/parameters/R/compare_parameters.R | 26 parameters-0.20.1/parameters/R/convert_efa_to_cfa.R | 6 parameters-0.20.1/parameters/R/display.R | 10 parameters-0.20.1/parameters/R/dominance_analysis.R | 7 parameters-0.20.1/parameters/R/equivalence_test.R | 17 parameters-0.20.1/parameters/R/extract_parameters.R | 41 parameters-0.20.1/parameters/R/extract_parameters_anova.R | 22 parameters-0.20.1/parameters/R/extract_random_parameters.R | 1 parameters-0.20.1/parameters/R/extract_random_variances.R | 11 parameters-0.20.1/parameters/R/format.R | 175 -- parameters-0.20.1/parameters/R/format_order.R | 27 parameters-0.20.1/parameters/R/format_p_adjust.R | 2 parameters-0.20.1/parameters/R/format_parameters.R | 16 parameters-0.20.1/parameters/R/methods_BBMM.R | 1 parameters-0.20.1/parameters/R/methods_DirichletReg.R | 1 parameters-0.20.1/parameters/R/methods_aov.R | 108 - parameters-0.20.1/parameters/R/methods_bamlss.R | 2 parameters-0.20.1/parameters/R/methods_base.R | 4 parameters-0.20.1/parameters/R/methods_bife.R | 1 parameters-0.20.1/parameters/R/methods_biglm.R | 1 parameters-0.20.1/parameters/R/methods_brms.R | 4 parameters-0.20.1/parameters/R/methods_censReg.R | 1 parameters-0.20.1/parameters/R/methods_coxme.R | 1 parameters-0.20.1/parameters/R/methods_coxrobust.R | 1 parameters-0.20.1/parameters/R/methods_crch.R | 1 parameters-0.20.1/parameters/R/methods_flexsurvreg.R | 1 parameters-0.20.1/parameters/R/methods_gamm4.R | 1 parameters-0.20.1/parameters/R/methods_gee.R | 1 parameters-0.20.1/parameters/R/methods_gmnl.R | 1 parameters-0.20.1/parameters/R/methods_ivfixed.R | 1 parameters-0.20.1/parameters/R/methods_ivprobit.R | 1 parameters-0.20.1/parameters/R/methods_logistf.R | 41 parameters-0.20.1/parameters/R/methods_metafor.R | 2 parameters-0.20.1/parameters/R/methods_mixmod.R | 1 parameters-0.20.1/parameters/R/methods_mixor.R | 1 parameters-0.20.1/parameters/R/methods_mlm.R | 15 parameters-0.20.1/parameters/R/methods_mmrm.R |only parameters-0.20.1/parameters/R/methods_multgee.R | 1 parameters-0.20.1/parameters/R/methods_panelr.R | 18 parameters-0.20.1/parameters/R/methods_posterior.R | 4 parameters-0.20.1/parameters/R/methods_robmixglm.R | 1 parameters-0.20.1/parameters/R/methods_rstan.R | 6 parameters-0.20.1/parameters/R/methods_rstanarm.R | 3 parameters-0.20.1/parameters/R/methods_scam.R | 1 parameters-0.20.1/parameters/R/methods_selection.R | 5 parameters-0.20.1/parameters/R/methods_sem.R | 5 parameters-0.20.1/parameters/R/methods_spaMM.R | 1 parameters-0.20.1/parameters/R/methods_speedglm.R | 9 parameters-0.20.1/parameters/R/methods_stats4.R | 1 parameters-0.20.1/parameters/R/methods_systemfit.R | 2 parameters-0.20.1/parameters/R/n_clusters.R | 20 parameters-0.20.1/parameters/R/n_clusters_easystats.R | 19 parameters-0.20.1/parameters/R/n_factors.R | 137 - parameters-0.20.1/parameters/R/parameters_type.R | 8 parameters-0.20.1/parameters/R/plot.R | 7 parameters-0.20.1/parameters/R/pool_parameters.R | 8 parameters-0.20.1/parameters/R/principal_components.R | 79 parameters-0.20.1/parameters/R/print.parameters_model.R | 14 parameters-0.20.1/parameters/R/print_html.R | 20 parameters-0.20.1/parameters/R/print_md.R | 3 parameters-0.20.1/parameters/R/random_parameters.R | 9 parameters-0.20.1/parameters/R/reduce_parameters.R | 10 parameters-0.20.1/parameters/R/select_parameters.R | 36 parameters-0.20.1/parameters/R/standardize_info.R | 14 parameters-0.20.1/parameters/R/standardize_parameters.R | 99 - parameters-0.20.1/parameters/R/utils.R | 2 parameters-0.20.1/parameters/R/utils_cleaners.R | 2 parameters-0.20.1/parameters/R/utils_clustering.R | 4 parameters-0.20.1/parameters/R/utils_format.R | 89 - parameters-0.20.1/parameters/R/utils_model_parameters.R | 10 parameters-0.20.1/parameters/R/utils_pca_efa.R | 8 parameters-0.20.1/parameters/man/convert_efa_to_cfa.Rd | 4 parameters-0.20.1/parameters/man/display.parameters_model.Rd | 7 parameters-0.20.1/parameters/man/dominance_analysis.Rd | 2 parameters-0.20.1/parameters/man/equivalence_test.lm.Rd | 6 parameters-0.20.1/parameters/man/model_parameters.aov.Rd | 91 - parameters-0.20.1/parameters/man/n_clusters.Rd | 17 parameters-0.20.1/parameters/man/n_factors.Rd | 32 parameters-0.20.1/parameters/man/principal_components.Rd | 60 parameters-0.20.1/parameters/man/standardize_parameters.Rd | 25 parameters-0.20.1/parameters/tests/testthat.R | 2 parameters-0.20.1/parameters/tests/testthat/_snaps/pool_parameters.md |only parameters-0.20.1/parameters/tests/testthat/_snaps/printing-stan.md |only parameters-0.20.1/parameters/tests/testthat/_snaps/printing.md | 486 ++--- parameters-0.20.1/parameters/tests/testthat/_snaps/printing2.md | 34 parameters-0.20.1/parameters/tests/testthat/helper.R |only parameters-0.20.1/parameters/tests/testthat/test-GLMMadaptive.R | 15 parameters-0.20.1/parameters/tests/testthat/test-MCMCglmm.R | 5 parameters-0.20.1/parameters/tests/testthat/test-PMCMRplus.R | 2 parameters-0.20.1/parameters/tests/testthat/test-backticks.R | 216 +- parameters-0.20.1/parameters/tests/testthat/test-base.R | 4 parameters-0.20.1/parameters/tests/testthat/test-betareg.R | 2 parameters-0.20.1/parameters/tests/testthat/test-bootstrap_emmeans.R | 10 parameters-0.20.1/parameters/tests/testthat/test-bracl.R | 15 parameters-0.20.1/parameters/tests/testthat/test-car.R | 6 parameters-0.20.1/parameters/tests/testthat/test-cluster_analysis.R | 2 parameters-0.20.1/parameters/tests/testthat/test-compare_parameters.R | 207 +- parameters-0.20.1/parameters/tests/testthat/test-coxph.R | 2 parameters-0.20.1/parameters/tests/testthat/test-dominance_analysis.R | 2 parameters-0.20.1/parameters/tests/testthat/test-emmGrid-df_colname.R | 6 parameters-0.20.1/parameters/tests/testthat/test-equivalence_test.R | 16 parameters-0.20.1/parameters/tests/testthat/test-format.R | 14 parameters-0.20.1/parameters/tests/testthat/test-format_model_parameters.R | 2 parameters-0.20.1/parameters/tests/testthat/test-format_p_adjust.R | 10 parameters-0.20.1/parameters/tests/testthat/test-format_parameters.R | 2 parameters-0.20.1/parameters/tests/testthat/test-gam.R | 4 parameters-0.20.1/parameters/tests/testthat/test-gamm.R | 4 parameters-0.20.1/parameters/tests/testthat/test-gee.R | 4 parameters-0.20.1/parameters/tests/testthat/test-geeglm.R | 2 parameters-0.20.1/parameters/tests/testthat/test-get_scores.R | 2 parameters-0.20.1/parameters/tests/testthat/test-glmer.R | 5 parameters-0.20.1/parameters/tests/testthat/test-glmmTMB-2.R | 2 parameters-0.20.1/parameters/tests/testthat/test-glmmTMB.R | 70 parameters-0.20.1/parameters/tests/testthat/test-gls.R | 4 parameters-0.20.1/parameters/tests/testthat/test-ivreg.R | 4 parameters-0.20.1/parameters/tests/testthat/test-lavaan.R | 2 parameters-0.20.1/parameters/tests/testthat/test-lmerTest.R | 2 parameters-0.20.1/parameters/tests/testthat/test-marginaleffects.R | 1 parameters-0.20.1/parameters/tests/testthat/test-mira.R | 4 parameters-0.20.1/parameters/tests/testthat/test-mlm.R | 148 - parameters-0.20.1/parameters/tests/testthat/test-mmrm.R |only parameters-0.20.1/parameters/tests/testthat/test-model_parameters.BFBayesFactor.R | 10 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.MASS.R | 2 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.afex_aov.R | 4 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.anova.R | 6 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.aov.R | 3 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.aov_es_ci.R | 2 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.blmerMod.R | 2 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.cgam.R | 6 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.cpglmm.R | 2 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.efa_cfa.R | 10 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.fixest.R | 4 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.gam.R | 6 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.glht.R | 2 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.glm.R | 2 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.htest.R | 6 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.hurdle.R | 2 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.lme.R | 2 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.lqmm.R | 2 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.maov.R | 32 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.mediate.R | 2 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.metaBMA.R | 6 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.metafor.R | 2 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.mfx.R | 2 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.mixed.R | 4 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.mle2.R | 2 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.pairwise.htest.R | 58 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.truncreg.R | 2 parameters-0.20.1/parameters/tests/testthat/test-model_parameters.vgam.R | 2 parameters-0.20.1/parameters/tests/testthat/test-model_parameters_df.R | 2 parameters-0.20.1/parameters/tests/testthat/test-model_parameters_df_method.R | 6 parameters-0.20.1/parameters/tests/testthat/test-model_parameters_labels.R | 11 parameters-0.20.1/parameters/tests/testthat/test-model_parameters_mixed_coeforder.R | 2 parameters-0.20.1/parameters/tests/testthat/test-model_parameters_ordinal.R | 5 parameters-0.20.1/parameters/tests/testthat/test-model_parameters_random_pars.R | 5 parameters-0.20.1/parameters/tests/testthat/test-model_parameters_robust.R | 15 parameters-0.20.1/parameters/tests/testthat/test-model_parameters_std.R | 70 parameters-0.20.1/parameters/tests/testthat/test-n_factors.R | 4 parameters-0.20.1/parameters/tests/testthat/test-p_adjust.R | 2 parameters-0.20.1/parameters/tests/testthat/test-p_value.R | 31 parameters-0.20.1/parameters/tests/testthat/test-panelr.R | 4 parameters-0.20.1/parameters/tests/testthat/test-parameters_selection.R | 22 parameters-0.20.1/parameters/tests/testthat/test-parameters_table.R | 2 parameters-0.20.1/parameters/tests/testthat/test-parameters_type-2.R | 159 - parameters-0.20.1/parameters/tests/testthat/test-parameters_type.R | 30 parameters-0.20.1/parameters/tests/testthat/test-pca.R | 2 parameters-0.20.1/parameters/tests/testthat/test-plm.R | 8 parameters-0.20.1/parameters/tests/testthat/test-pool_parameters.R |only parameters-0.20.1/parameters/tests/testthat/test-posterior.R | 20 parameters-0.20.1/parameters/tests/testthat/test-printing-stan.r |only parameters-0.20.1/parameters/tests/testthat/test-printing.r | 1 parameters-0.20.1/parameters/tests/testthat/test-printing2.r | 28 parameters-0.20.1/parameters/tests/testthat/test-quantreg.R | 6 parameters-0.20.1/parameters/tests/testthat/test-random_effects_ci-glmmTMB.R | 28 parameters-0.20.1/parameters/tests/testthat/test-random_effects_ci.R | 37 parameters-0.20.1/parameters/tests/testthat/test-rank_deficienty.R | 28 parameters-0.20.1/parameters/tests/testthat/test-robust.R | 4 parameters-0.20.1/parameters/tests/testthat/test-rstanarm.R | 4 parameters-0.20.1/parameters/tests/testthat/test-simulate_model.R | 16 parameters-0.20.1/parameters/tests/testthat/test-simulate_parameters.R | 2 parameters-0.20.1/parameters/tests/testthat/test-sort_parameters.R | 1 parameters-0.20.1/parameters/tests/testthat/test-standardize_info.R | 2 parameters-0.20.1/parameters/tests/testthat/test-standardize_parameters.R | 844 ++++------ parameters-0.20.1/parameters/tests/testthat/test-svytable.R | 5 parameters-0.20.1/parameters/tests/testthat/test-tobit.R | 4 parameters-0.20.1/parameters/tests/testthat/test-wrs2.R | 2 parameters-0.20.1/parameters/tests/testthat/test-zeroinfl.R | 4 200 files changed, 2482 insertions(+), 2390 deletions(-)
Title: Functions to Support the ICES Transparent Assessment Framework
Description: Functions to support the ICES Transparent Assessment Framework
<https://taf.ices.dk> to organize data, methods, and results used in ICES
assessments. ICES is an organization facilitating international collaboration
in marine science.
Author: Colin Millar [aut, cre],
Arni Magnusson [aut],
Alexandros Kokkalis [ctb],
Iago Mosqueira [ctb],
Ibrahim Umar [ctb],
Hjalte Parner [ctb]
Maintainer: Colin Millar <colin.millar@ices.dk>
Diff between icesTAF versions 4.0.0 dated 2022-09-07 and 4.0.2 dated 2023-01-11
DESCRIPTION | 15 ++-- MD5 | 20 ++++-- NAMESPACE | 149 +++++++++++++++++++++++++++++++++++++++++++++ NEWS.md | 7 ++ R/TAF.R |only R/download.analysis.R |only R/install.deps.R | 2 R/run.analysis.R |only R/taf.roxygenise.R | 3 R/taf.skeleton.sa.org.R |only man/download.analysis.Rd |only man/run.analysis.Rd |only man/taf-reexports.Rd |only man/taf.roxygenise.Rd | 2 man/taf.skeleton.sa.org.Rd |only 15 files changed, 179 insertions(+), 19 deletions(-)
Title: Collection of Codes with Labels
Description: Includes several classifications such as International Statistical Classification of Diseases and Related Health Problems 10th Revision (ICD10), Anatomical Therapeutic Chemical (ATC) Classification, The International Classification of Diseases for Oncology (ICD-O-3), and International Classification of Primary Care (ICPC). Includes function that adds descriptive label to code value. Depending on classification following languages are available: English, Finnish, Swedish, and Latin.
Author: Jari Haukka [aut, cre]
Maintainer: Jari Haukka <jari.haukka@helsinki.fi>
Diff between codeCollection versions 0.1.2 dated 2021-03-31 and 0.1.3 dated 2023-01-11
DESCRIPTION | 8 ++++---- MD5 | 9 ++++++--- NEWS.md |only R/codeCollection.R | 13 ++++++++++++- data/ATCKooditV2022.rda |only man/ATCKooditV2022.Rd |only man/tpksaKoodit.Rd | 2 +- 7 files changed, 23 insertions(+), 9 deletions(-)
More information about codeCollection at CRAN
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More information about timeLineGraphics at CRAN
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Title: Fast and Portable Character String Processing Facilities
Description: A collection of character string/text/natural language
processing tools for pattern searching (e.g., with 'Java'-like regular
expressions or the 'Unicode' collation algorithm), random string generation,
case mapping, string transliteration, concatenation, sorting, padding,
wrapping, Unicode normalisation, date-time formatting and parsing,
and many more. They are fast, consistent, convenient, and -
thanks to 'ICU' (International Components for Unicode) -
portable across all locales and platforms. Documentation about 'stringi' is
provided via its website at <https://stringi.gagolewski.com/> and
the paper by Gagolewski (2022, <doi:10.18637/jss.v103.i02>).
Author: Marek Gagolewski [aut, cre, cph] ,
Bartek Tartanus [ctb], and others ;
Unicode, Inc. and others
Maintainer: Marek Gagolewski <marek@gagolewski.com>
Diff between stringi versions 1.7.8 dated 2022-07-11 and 1.7.12 dated 2023-01-11
DESCRIPTION | 16 INSTALL | 9 LICENSE | 2 MD5 | 68 NEWS | 11 R/install.R | 2 R/search.R | 8 R/search_locate_4.R | 7 R/search_locate_bound.R | 6 R/sort.R | 12 R/stringi-package.R | 4 R/trans_normalization.R | 4 R/trans_transliterate.R | 4 build/partial.rdb |binary configure | 3337 ++++++++++++++++++++---------------- configure.ac | 4 configure.win | 2 man/about_search_charclass.Rd | 2 man/about_search_coll.Rd | 2 man/about_search_regex.Rd | 2 man/about_stringi.Rd | 2 man/stri_sort.Rd | 2 man/stri_trans_general.Rd | 2 man/stri_trans_nf.Rd | 2 src/icu69/common/putil.cpp | 2 src/icu69/common/uassert.h | 13 src/icu69/common/ubiditransform.cpp | 4 src/icu69/i18n/calendar.cpp | 10 src/icu69/i18n/choicfmt.cpp | 54 src/icu69/i18n/number_skeletons.cpp | 3 src/icu69/i18n/plurrule.cpp | 2 src/icu69/i18n/uspoof_impl.cpp | 16 src/install.libs.R.in | 2 src/stri_prepare_arg.cpp | 4 src/stri_time_format.cpp | 3 35 files changed, 2013 insertions(+), 1610 deletions(-)
More information about spectralAnalysis at CRAN
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Title: Tools for Reading SDMX Data and Metadata
Description: Set of classes and methods to read data and metadata documents
exchanged through the Statistical Data and Metadata Exchange (SDMX) framework,
currently focusing on the SDMX XML standard format (SDMX-ML).
Author: Emmanuel Blondel [aut, cre] ,
Matthieu Stigler [ctb] ,
Eric Persson [ctb]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between rsdmx versions 0.6 dated 2021-02-06 and 0.6-1 dated 2023-01-11
DESCRIPTION | 8 MD5 | 32 +- R/SDMX-methods.R | 2 R/SDMXCompactData-methods.R | 8 R/SDMXGenericData-methods.R | 2 R/SDMXServiceProvider-methods.R | 200 +++++++++--------- R/SDMXServiceProviders-methods.R | 2 R/readSDMX.R | 52 +++- README.md | 53 +--- build/vignette.rds |binary inst/doc/quickstart.R | 33 +-- inst/doc/quickstart.Rmd | 17 - inst/doc/quickstart.html | 17 - tests/test-all.R | 1 tests/testthat/test_Data.R | 52 ++-- tests/testthat/test_Main_Helpers.R | 399 +++++++++++++------------------------ vignettes/quickstart.Rmd | 17 - 17 files changed, 379 insertions(+), 516 deletions(-)
Title: Preprocessing and Feature Engineering Steps for Modeling
Description: A recipe prepares your data for modeling. We provide an
extensible framework for pipeable sequences of feature engineering
steps provides preprocessing tools to be applied to data. Statistical
parameters for the steps can be estimated from an initial data set and
then applied to other data sets. The resulting processed output can
then be used as inputs for statistical or machine learning models.
Author: Max Kuhn [aut, cre],
Hadley Wickham [aut],
Posit Software PBC [cph]
Maintainer: Max Kuhn <max@posit.co>
Diff between recipes versions 1.0.3 dated 2022-11-09 and 1.0.4 dated 2023-01-11
DESCRIPTION | 18 - MD5 | 361 ++++++++++++------------- NAMESPACE | 4 NEWS.md | 12 R/0_imports.R | 2 R/BoxCox.R | 3 R/YeoJohnson.R | 13 R/bin2factor.R | 2 R/bs.R | 2 R/center.R | 2 R/classdist.R | 5 R/corr.R | 2 R/count.R | 4 R/cut.R | 3 R/date.R | 11 R/depth.R | 5 R/discretize.R | 2 R/dummy.R | 6 R/dummy_multi_choice.R | 8 R/extension_check.R |only R/extract.R | 5 R/factor2string.R | 31 -- R/geodist.R | 12 R/get_types_recipes.R | 39 ++ R/harmonic.R | 19 - R/holiday.R | 11 R/hyperbolic.R | 2 R/ica.R | 2 R/impute_linear.R | 8 R/impute_lower.R | 2 R/impute_mean.R | 2 R/impute_median.R | 2 R/impute_mode.R | 7 R/impute_roll.R | 6 R/integer.R | 5 R/intercept.R | 14 R/inverse.R | 3 R/invlogit.R | 2 R/isomap.R | 3 R/kpca.R | 2 R/kpca_poly.R | 3 R/kpca_rbf.R | 2 R/lag.R | 13 R/lincombo.R | 3 R/log.R | 3 R/logit.R | 3 R/misc.R | 103 ++++--- R/naindicate.R | 2 R/naomit.R | 4 R/nnmf.R | 3 R/nnmf_sparse.R | 3 R/normalize.R | 2 R/novel.R | 2 R/ns.R | 3 R/num2factor.R | 3 R/ordinalscore.R | 15 - R/other.R | 7 R/pca.R | 4 R/percentile.R | 1 R/pkg_check.R | 22 - R/pls.R | 3 R/poly.R | 3 R/poly_bernstein.R | 2 R/profile.R | 3 R/range.R | 2 R/ratio.R | 6 R/recipe.R | 45 ++- R/regex.R | 4 R/relevel.R | 10 R/relu.R | 2 R/scale.R | 2 R/selections.R | 14 R/spatialsign.R | 2 R/spline_b.R | 2 R/spline_convex.R | 2 R/spline_monotone.R | 2 R/spline_natural.R | 2 R/spline_nonnegative.R | 2 R/sqrt.R | 2 R/string2factor.R | 15 - R/time.R | 10 R/unknown.R | 2 R/unorder.R | 18 - R/update.R | 2 R/window.R | 2 man/check_type.Rd | 15 - man/get_data_types.Rd | 19 + man/juice.Rd | 26 - man/recipes-internal.Rd | 8 man/recipes_eval_select.Rd | 8 man/recipes_extension_check.Rd |only man/selections.Rd | 3 man/step_factor2string.Rd | 20 - man/step_intercept.Rd | 5 man/step_lag.Rd | 5 man/step_profile.Rd | 3 man/tidy.recipe.Rd | 30 +- man/update.step.Rd | 2 tests/testthat/_snaps/R4.2/discretized.md |only tests/testthat/_snaps/R4.2/selections.md | 2 tests/testthat/_snaps/YeoJohnson.md | 3 tests/testthat/_snaps/basics.md | 8 tests/testthat/_snaps/bin2factor.md | 5 tests/testthat/_snaps/count.md | 5 tests/testthat/_snaps/cut.md | 10 tests/testthat/_snaps/discretized.md | 14 tests/testthat/_snaps/dummies.md | 22 - tests/testthat/_snaps/dummies_extract.md | 3 tests/testthat/_snaps/dummy_multi_choice.md | 5 tests/testthat/_snaps/extension_check.md |only tests/testthat/_snaps/factors2strings.md | 5 tests/testthat/_snaps/filter.md | 3 tests/testthat/_snaps/geodist.md | 18 - tests/testthat/_snaps/harmonic.md | 14 tests/testthat/_snaps/impute_linear.md | 6 tests/testthat/_snaps/impute_lower.md | 3 tests/testthat/_snaps/impute_mean.md | 5 tests/testthat/_snaps/impute_median.md | 5 tests/testthat/_snaps/impute_mode.md | 3 tests/testthat/_snaps/impute_roll.md | 10 tests/testthat/_snaps/isomap.md | 3 tests/testthat/_snaps/lag.md | 3 tests/testthat/_snaps/logit.md | 3 tests/testthat/_snaps/missing.md | 18 - tests/testthat/_snaps/mutate.md | 3 tests/testthat/_snaps/novel.md | 8 tests/testthat/_snaps/num2factor.md | 5 tests/testthat/_snaps/ordinalscore.md | 5 tests/testthat/_snaps/other.md | 3 tests/testthat/_snaps/pkg_check.md |only tests/testthat/_snaps/pls_new.md | 6 tests/testthat/_snaps/profile.md | 6 tests/testthat/_snaps/ratio.md | 15 - tests/testthat/_snaps/regex.md | 5 tests/testthat/_snaps/relevel.md | 10 tests/testthat/_snaps/relu.md | 5 tests/testthat/_snaps/rename.md | 3 tests/testthat/_snaps/rm.md | 6 tests/testthat/_snaps/roll.md | 8 tests/testthat/_snaps/select.md | 3 tests/testthat/_snaps/selections.md | 2 tests/testthat/_snaps/slice.md | 3 tests/testthat/_snaps/string2factor.md | 5 tests/testthat/_snaps/unknown.md | 8 tests/testthat/_snaps/unorder.md | 10 tests/testthat/test-extension_check.R |only tests/testthat/test-pkg_check.R |only tests/testthat/test-update-role-requirements.R | 6 tests/testthat/test_arrange.R | 6 tests/testthat/test_bake.R | 5 tests/testthat/test_basics.R | 4 tests/testthat/test_bin2factor.R | 19 + tests/testthat/test_column_order.R | 16 - tests/testthat/test_discretized.R | 4 tests/testthat/test_dummies.R | 5 tests/testthat/test_factors2strings.R | 2 tests/testthat/test_filter.R | 10 tests/testthat/test_geodist.R | 8 tests/testthat/test_ica.R | 4 tests/testthat/test_impute_linear.R | 6 tests/testthat/test_impute_lower.R | 2 tests/testthat/test_impute_roll.R | 4 tests/testthat/test_integer.R | 16 - tests/testthat/test_interact.R | 4 tests/testthat/test_isomap.R | 2 tests/testthat/test_kpca.R | 2 tests/testthat/test_kpca_poly.R | 2 tests/testthat/test_kpca_rbf.R | 2 tests/testthat/test_mutate.R | 14 tests/testthat/test_naindicate.R | 6 tests/testthat/test_naomit.R | 6 tests/testthat/test_num2factor.R | 4 tests/testthat/test_pca.R | 2 tests/testthat/test_pls_new.R | 14 tests/testthat/test_pls_old.R | 2 tests/testthat/test_poly.R | 2 tests/testthat/test_profile.R | 8 tests/testthat/test_relevel.R | 2 tests/testthat/test_rename.R | 8 tests/testthat/test_rm.R | 12 tests/testthat/test_roles.R | 6 tests/testthat/test_sample.R | 14 tests/testthat/test_slice.R | 19 - tests/testthat/test_string2factor.R | 6 tests/testthat/test_unknown.R | 4 185 files changed, 934 insertions(+), 765 deletions(-)
Title: Perform Pharmacokinetic Non-Compartmental Analysis
Description: Compute standard Non-Compartmental Analysis (NCA) parameters for
typical pharmacokinetic analyses and summarize them.
Author: Bill Denney [aut, cre] ,
Clare Buckeridge [aut],
Sridhar Duvvuri [ctb]
Maintainer: Bill Denney <wdenney@humanpredictions.com>
Diff between PKNCA versions 0.10.0 dated 2022-10-15 and 0.10.1 dated 2023-01-11
PKNCA-0.10.0/PKNCA/R/parseFormula.R |only PKNCA-0.10.0/PKNCA/man/formula.parseFormula.Rd |only PKNCA-0.10.0/PKNCA/man/parseFormula.Rd |only PKNCA-0.10.0/PKNCA/tests/testthat/test-parseFormula.R |only PKNCA-0.10.1/PKNCA/DESCRIPTION | 14 PKNCA-0.10.1/PKNCA/MD5 | 89 +- PKNCA-0.10.1/PKNCA/NAMESPACE | 5 PKNCA-0.10.1/PKNCA/NEWS.md | 9 PKNCA-0.10.1/PKNCA/R/auc.R | 3 PKNCA-0.10.1/PKNCA/R/class-PKNCAconc.R | 82 +- PKNCA-0.10.1/PKNCA/R/class-PKNCAdata.R | 2 PKNCA-0.10.1/PKNCA/R/class-PKNCAdose.R | 70 +- PKNCA-0.10.1/PKNCA/R/class-PKNCAresults.R | 8 PKNCA-0.10.1/PKNCA/R/exclude.R | 18 PKNCA-0.10.1/PKNCA/R/parse_formula_to_cols.R |only PKNCA-0.10.1/PKNCA/R/pk.calc.simple.R | 97 ++ PKNCA-0.10.1/PKNCA/R/prepare_data.R | 30 PKNCA-0.10.1/PKNCA/R/unit-support.R | 3 PKNCA-0.10.1/PKNCA/README.md | 2 PKNCA-0.10.1/PKNCA/inst/WORDLIST | 8 PKNCA-0.10.1/PKNCA/inst/doc/v01-introduction-and-usage.html | 334 +++++----- PKNCA-0.10.1/PKNCA/inst/doc/v02-example-theophylline.html | 285 +++++--- PKNCA-0.10.1/PKNCA/inst/doc/v03-selection-of-calculation-intervals.html | 142 ++-- PKNCA-0.10.1/PKNCA/inst/doc/v04-sparse.html | 4 PKNCA-0.10.1/PKNCA/inst/doc/v07-unit-conversion.html | 18 PKNCA-0.10.1/PKNCA/inst/doc/v08-data-imputation.html | 4 PKNCA-0.10.1/PKNCA/inst/doc/v22-time-to-steady-state.html | 12 PKNCA-0.10.1/PKNCA/inst/doc/v30-training-session.html | 158 ++-- PKNCA-0.10.1/PKNCA/inst/doc/v40-options-for-controlling-PKNCA.html | 16 PKNCA-0.10.1/PKNCA/inst/doc/v60-PKNCA-validation.html | 48 - PKNCA-0.10.1/PKNCA/man/findOperator.Rd | 5 PKNCA-0.10.1/PKNCA/man/parse_formula_to_cols.Rd |only PKNCA-0.10.1/PKNCA/man/pk.calc.aucabove.Rd |only PKNCA-0.10.1/PKNCA/man/pk.calc.clast.obs.Rd | 7 PKNCA-0.10.1/PKNCA/man/pk.calc.cmax.Rd | 12 PKNCA-0.10.1/PKNCA/man/pk.calc.cstart.Rd |only PKNCA-0.10.1/PKNCA/man/pk.calc.ctrough.Rd | 11 PKNCA-0.10.1/PKNCA/man/summary.PKNCAresults.Rd | 2 PKNCA-0.10.1/PKNCA/tests/spelling.R | 8 PKNCA-0.10.1/PKNCA/tests/testthat.R | 8 PKNCA-0.10.1/PKNCA/tests/testthat/test-check.intervals.R | 6 PKNCA-0.10.1/PKNCA/tests/testthat/test-class-PKNCAconc.R | 324 ++++++--- PKNCA-0.10.1/PKNCA/tests/testthat/test-class-PKNCAdose.R | 186 +++-- PKNCA-0.10.1/PKNCA/tests/testthat/test-class-PKNCAresults.R | 52 - PKNCA-0.10.1/PKNCA/tests/testthat/test-dplyr.R | 38 - PKNCA-0.10.1/PKNCA/tests/testthat/test-exclude.R | 110 +-- PKNCA-0.10.1/PKNCA/tests/testthat/test-parse_formula_to_cols.R |only PKNCA-0.10.1/PKNCA/tests/testthat/test-pk.calc.all.R | 41 - PKNCA-0.10.1/PKNCA/tests/testthat/test-pk.calc.simple.R | 40 + PKNCA-0.10.1/PKNCA/tests/testthat/test-unit-support.R | 12 50 files changed, 1442 insertions(+), 881 deletions(-)
Title: Practical Multilevel Modeling
Description: Convenience functions and datasets to be used with Practical Multilevel Modeling using R. The package includes functions for calculating group means, group mean centered variables, and displaying some basic missing data information. A function for computing robust standard errors for linear mixed models based on Liang and Zeger (1986) <doi:10.1093/biomet/73.1.13> and Bell and 'McCaffrey' (2002) <https://www150.statcan.gc.ca/n1/en/pub/12-001-x/2002002/article/9058-eng.pdf?st=NxMjN1YZ> is included as well as a function for checking for level-one homoskedasticity (Raudenbush & Bryk, 2002, ISBN:076191904X).
Author: Francis Huang [aut, cre]
Maintainer: Francis Huang <flhuang2000@yahoo.com>
Diff between MLMusingR versions 0.2.0 dated 2022-05-10 and 0.3.0 dated 2023-01-11
DESCRIPTION | 13 +++++++------ MD5 | 13 +++++++++---- NAMESPACE | 15 +++++++++++++++ R/globals.R | 2 +- R/robust_mixed.R | 4 ++++ R/tidy_CR2.R |only R/utils-pipe.R |only man/glance.CR2.Rd |only man/pipe.Rd |only man/tidy.CR2.Rd |only 10 files changed, 36 insertions(+), 11 deletions(-)
Title: Sample Size Calculations for Longitudinal Data
Description: Compute power and sample size for linear models of longitudinal
data. Supported models include mixed-effects models and models fit by
generalized least squares and generalized estimating equations. The package
is described in Iddi and Donohue (2022) <DOI:10.32614/RJ-2022-022>. Relevant
formulas are derived by Liu and Liang (1997) <DOI:10.2307/2533554>,
Diggle et al (2002) <ISBN:9780199676750>, and Lu, Luo, and Chen (2008)
<DOI:10.2202/1557-4679.1098>.
Author: Michael C. Donohue [aut, cre],
Steve D. Edland [ctb],
Nan Hu [ctb]
Maintainer: Michael C. Donohue <mdonohue@usc.edu>
Diff between longpower versions 1.0.23 dated 2021-04-20 and 1.0.24 dated 2023-01-11
DESCRIPTION | 24 - MD5 | 22 - NAMESPACE | 1 R/edland.linear.power.R | 6 R/hu.mackey.thomas.linear.power.R |only R/lmmpower.R | 73 +++- build/vignette.rds |binary inst/CITATION | 39 +- inst/doc/longpower.html | 550 ++++++++++++++++++++++++++++------- man/edland.linear.power.Rd | 6 man/hu.mackey.thomas.linear.power.Rd |only man/lmmpower.Rd | 22 + tests/testthat/tests.R | 312 +++++++++++++++++++ 13 files changed, 893 insertions(+), 162 deletions(-)
More information about connectwidgets at CRAN
Permanent link
Title: Statistical Methods for Psychologists
Description: Implements confidence interval and sample size methods that are especially useful in psychological research. The methods can be applied in 1-group, 2-group, paired-samples, and multiple-group designs and to a variety of parameters including means, medians, proportions, slopes, standardized mean differences, standardized linear contrasts of means, plus several measures of correlation and association. The confidence intervals and sample size functions are applicable to single parameters as well as differences, ratios, and linear contrasts of parameters. The sample size functions can be used to approximate the sample size needed to estimate a parameter or function of parameters with desired confidence interval precision or to perform a variety of hypothesis tests (directional two-sided, equivalence, superiority, noninferiority) with desired power. For details see: Statistical Methods for Psychologists, Volumes 1 – 4, <https://dgbonett.sites.ucsc.edu/>.
Author: Douglas G. Bonett [aut, cre],
Robert J. Calin-Jageman [ctb]
Maintainer: Douglas G. Bonett <dgbonett@ucsc.edu>
Diff between statpsych versions 1.2.0 dated 2022-08-19 and 1.3.0 dated 2023-01-11
DESCRIPTION | 6 MD5 | 134 ++--- NAMESPACE | 6 NEWS.md | 29 + R/statpsych1.R | 966 ++++++++++++++++++++++++++++++++------- R/statpsych2.R | 140 ++++- R/statpsych3.R | 77 +-- build/partial.rdb |binary inst/REFERENCES.bib | 6 man/ci.cod1.Rd | 11 man/ci.cod2.Rd | 3 man/ci.cramer.Rd | 94 +-- man/ci.indirect.Rd | 2 man/ci.lc.mean.bs.Rd | 4 man/ci.lc.median.bs.Rd | 2 man/ci.lc.reg.Rd | 5 man/ci.lc.stdmean.bs.Rd | 17 man/ci.lc.stdmean.ws.Rd | 17 man/ci.mad1.Rd | 6 man/ci.mann.Rd | 15 man/ci.mape.Rd | 18 man/ci.mean2.Rd | 7 man/ci.median.ps.Rd | 4 man/ci.median1.Rd | 6 man/ci.median2.Rd | 4 man/ci.oddsratio.Rd | 2 man/ci.phi.Rd | 4 man/ci.random.anova1.Rd | 4 man/ci.slope.prop.bs.Rd | 2 man/ci.spear.Rd | 2 man/ci.theil.Rd |only man/ci.tukey.Rd | 6 man/pi.score.ps.Rd |only man/pi.score2.Rd | 2 man/random.y.Rd | 3 man/random.yx.Rd | 3 man/sim.ci.cor.Rd | 112 ++-- man/sim.ci.mean.ps.Rd | 116 ++-- man/sim.ci.mean2.Rd | 114 ++-- man/sim.ci.median.ps.Rd |only man/sim.ci.median1.Rd | 96 +-- man/sim.ci.median2.Rd |only man/sim.ci.spear.Rd | 110 ++-- man/sim.ci.stdmean.ps.Rd |only man/sim.ci.stdmean2.Rd |only man/size.ci.lc.stdmean.bs.Rd | 23 man/size.ci.lc.stdmean.ws.Rd | 22 man/size.ci.mean.ps.Rd | 2 man/size.ci.rsqr.Rd | 2 man/size.ci.stdmean.ps.Rd | 20 man/size.ci.stdmean2.Rd | 18 man/size.equiv.mean.ps.Rd | 10 man/size.equiv.prop.ps.Rd | 25 - man/size.supinf.mean.ps.Rd | 9 man/size.test.cor.Rd | 4 man/size.test.lc.prop.bs.Rd | 6 man/size.test.mean.ps.Rd | 8 man/size.test.mean2.Rd | 2 man/size.test.prop.ps.Rd | 10 man/size.test.prop1.Rd | 4 man/size.test.prop2.Rd | 4 man/test.anova1.bs.Rd | 9 man/test.kurtosis.Rd | 4 man/test.mono.mean.bs.Rd | 12 man/test.mono.prop.bs.Rd | 2 man/test.prop.bs.Rd | 8 man/test.prop.ps.Rd | 8 man/test.prop2.Rd | 2 man/test.skew.Rd | 2 tests/testthat/test_statpsych1.R | 52 +- tests/testthat/test_statpsych2.R | 19 71 files changed, 1631 insertions(+), 811 deletions(-)
Title: Fatty Acid Metabolic Analysis
Description: Fatty acid metabolic analysis aimed to the estimation of FA import (I), de novo synthesis (S), fractional contribution of the 13C-tracers (D0, D1, D2), elongation (E) and desaturation (Des) based on mass isotopologue data.
Author: Maribel Alcoriza-Balaguer [aut, cre],
Juan Carlos Garcia-Canaveras [ctb],
Agustin Lahoz [ths]
Maintainer: Maribel Alcoriza-Balaguer <maribel_alcoriza@iislafe.es>
Diff between FAMetA versions 0.1.4 dated 2022-03-01 and 0.1.5 dated 2023-01-11
DESCRIPTION | 8 MD5 | 21 +- R/FAMetA.R | 2 build/vignette.rds |binary data/desaturationsdb.rda |binary data/parameters.rda |binary inst/doc/vignette.html | 432 ++++++++++++++++++++++++++++++++++++++--------- inst/extdata |only man/desaturationsdb.Rd | 2 man/parameters.Rd | 2 10 files changed, 371 insertions(+), 96 deletions(-)
Title: Bayesian Additive Regression Trees
Description: An advanced implementation of Bayesian Additive Regression Trees with expanded features for data analysis and visualization.
Author: Adam Kapelner and Justin Bleich
Maintainer: Adam Kapelner <kapelner@qc.cuny.edu>
Diff between bartMachine versions 1.3.2 dated 2022-10-25 and 1.3.3 dated 2023-01-11
CHANGELOG | 4 ++ DESCRIPTION | 8 ++--- MD5 | 28 +++++++++--------- R/bartMachine.R | 2 - build/vignette.rds |binary inst/doc/bartMachine.pdf |binary inst/java/bart_java.jar |binary java/bartMachine/StatToolbox.java | 16 ++-------- java/bartMachine/Tools.java | 16 ---------- java/bartMachine/bartMachineRegressionMultThread.java | 18 +++++------ java/bartMachine/bartMachineTreeNode.java | 25 +++++++--------- java/bartMachine/bartMachine_b_hyperparams.java | 12 +++---- java/bartMachine/bartMachine_f_gibbs_internal.java | 6 +-- java/bartMachine/bartMachine_i_prior_cov_spec.java | 10 +++--- man/bartMachine.Rd | 2 - 15 files changed, 64 insertions(+), 83 deletions(-)
Title: Analysis of NCES Education Survey and Assessment Data
Description: Read in and analyze functions for education survey and assessment data from the National Center for Education Statistics (NCES) <https://nces.ed.gov/>, including National Assessment of Educational Progress (NAEP) data <https://nces.ed.gov/nationsreportcard/> and data from the International Assessment Database: Organisation for Economic Co-operation and Development (OECD) <https://www.oecd.org/>, including Programme for International Student Assessment (PISA), Teaching and Learning International Survey (TALIS), Programme for the International Assessment of Adult Competencies (PIAAC), and International Association for the Evaluation of Educational Achievement (IEA) <https://www.iea.nl/>, including Trends in International Mathematics and Science Study (TIMSS), TIMSS Advanced, Progress in International Reading Literacy Study (PIRLS), International Civic and Citizenship Study (ICCS), International Computer and Information Literacy Study (ICILS), and Civic Education S [...truncated...]
Author: Paul Bailey [aut, cre],
Ahmad Emad [aut],
Huade Huo [aut],
Michael Lee [aut],
Yuqi Liao [aut],
Alex Lishinski [aut],
Trang Nguyen [aut],
Qingshu Xie [aut],
Jiao Yu [aut],
Ting Zhang [aut],
Eric Buehler [aut],
person,
person),
Jeppe Bundsgaard [ctb],
[...truncated...]
Maintainer: Paul Bailey <pbailey@air.org>
Diff between EdSurvey versions 3.0.1 dated 2022-10-06 and 3.0.2 dated 2023-01-11
EdSurvey-3.0.1/EdSurvey/tests/testthat/test-27-SSOCS.R |only EdSurvey-3.0.2/EdSurvey/DESCRIPTION | 8 EdSurvey-3.0.2/EdSurvey/MD5 | 61 + EdSurvey-3.0.2/EdSurvey/NAMESPACE | 1 EdSurvey-3.0.2/EdSurvey/R/achievementLevels.R | 18 EdSurvey-3.0.2/EdSurvey/R/cor.sdf.R | 4 EdSurvey-3.0.2/EdSurvey/R/downloadICCS.R | 2 EdSurvey-3.0.2/EdSurvey/R/downloadICILS.R | 10 EdSurvey-3.0.2/EdSurvey/R/edsurvey.data.frame.R | 2 EdSurvey-3.0.2/EdSurvey/R/edsurvey.data.frame.list.R | 18 EdSurvey-3.0.2/EdSurvey/R/edsurveyTable.R | 10 EdSurvey-3.0.2/EdSurvey/R/gap.R | 98 +-- EdSurvey-3.0.2/EdSurvey/R/glm.sdf.R | 18 EdSurvey-3.0.2/EdSurvey/R/lm.sdf.R | 21 EdSurvey-3.0.2/EdSurvey/R/mixed.sdf.R | 1 EdSurvey-3.0.2/EdSurvey/R/mml.scoreNAEP.R | 14 EdSurvey-3.0.2/EdSurvey/R/mml.sdf.R | 12 EdSurvey-3.0.2/EdSurvey/R/percentile.R | 32 - EdSurvey-3.0.2/EdSurvey/R/readNAEP.r | 21 EdSurvey-3.0.2/EdSurvey/R/rq.sdf.R | 19 EdSurvey-3.0.2/EdSurvey/R/utilities.R | 21 EdSurvey-3.0.2/EdSurvey/build/vignette.rds |binary EdSurvey-3.0.2/EdSurvey/inst/NEWS.Rd | 25 EdSurvey-3.0.2/EdSurvey/inst/doc/introduction.Rmd | 2 EdSurvey-3.0.2/EdSurvey/inst/doc/introduction.html | 21 EdSurvey-3.0.2/EdSurvey/man/downloadICILS.Rd | 2 EdSurvey-3.0.2/EdSurvey/man/examples/setNAEPScoreCard.R |only EdSurvey-3.0.2/EdSurvey/man/lm.sdf.Rd | 496 ++++++++-------- EdSurvey-3.0.2/EdSurvey/man/setNAEPScoreCard.Rd | 22 EdSurvey-3.0.2/EdSurvey/tests/testthat/REF-0-main.R | 16 EdSurvey-3.0.2/EdSurvey/tests/testthat/test-10-main.R | 4 EdSurvey-3.0.2/EdSurvey/tests/testthat/test-65-SSOCS.R |only EdSurvey-3.0.2/EdSurvey/vignettes/introduction.Rmd | 2 33 files changed, 522 insertions(+), 459 deletions(-)
Title: Exploratory Factor Analysis Functions for Assessing
Dimensionality
Description: Functions for eleven procedures for determining the number of
factors, including functions for parallel analysis and the minimum average partial
test. There are also functions for conducting principal components analysis, principal
axis factor analysis, maximum likelihood factor analysis, image factor analysis,
and extension factor analysis, all of which can take raw data or correlation matrices
as input and with options for conducting the analyses using Pearson correlations,
Kendall correlations, Spearman correlations, gamma correlations, or polychoric
correlations. Varimax rotation, promax rotation, and Procrustes rotations can be
performed. Additional functions focus on the factorability of a correlation matrix,
the congruences between factors from different datasets, the assessment of local
independence, the assessment of factor solution complexity, and internal consistency.
Auerswald & Moshagen (2019, <doi:10.1037/met0000200>);
Fabrigar & Wegener (2012, ISBN:978-0-19 [...truncated...]
Author: Brian P. O'Connor [aut, cre]
Maintainer: Brian P. O'Connor <brian.oconnor@ubc.ca>
Diff between EFA.dimensions versions 0.1.7.4 dated 2022-02-06 and 0.1.7.6 dated 2023-01-11
DESCRIPTION | 26 ++++++++------- MD5 | 15 ++++---- NAMESPACE | 4 +- R/EXTENSION_FA.R | 42 ++++++++++++------------ R/INTERNAL.CONSISTENCY.R | 76 +++++++++++++++++++++++++++++++++++++------- R/POLYCHORIC_R.R | 18 ++++++---- R/onAttach.R |only man/EXTENSION_FA.Rd | 2 - man/INTERNAL.CONSISTENCY.Rd | 38 +++++++++++++++++----- 9 files changed, 153 insertions(+), 68 deletions(-)
More information about EFA.dimensions at CRAN
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Title: A Parametric Method for Generating Synthetic Data
Description: Generates synthetic data distributions to enable testing various modelling techniques in ways that real data does not allow. Noise can be added in a controlled manner such that the data seems real. This methodology is generic and therefore benefits both the academic and industrial research.
Author: Sidharth Macherla [aut, cre]
Maintainer: Sidharth Macherla <msidharthrasik@gmail.com>
Diff between conjurer versions 1.5.0 dated 2022-05-01 and 1.6.0 dated 2023-01-11
DESCRIPTION | 12 LICENSE | 2 MD5 | 23 - NAMESPACE | 1 NEWS.md | 2 R/buildModelData.R | 32 + R/genIndepDepJson.R | 37 + R/genMatrix.R | 1 inst/CITATION |only inst/doc/introduction_to_conjurer.html | 635 ++++++++++++++++++++++++--------- man/buildModelData.Rd | 4 man/genIndepDepJson.Rd | 7 man/genMatrix.Rd | 1 13 files changed, 554 insertions(+), 203 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-12-13 22.12.1.0.7
More information about datetimeoffset at CRAN
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