Title: Species Distribution Modeling and Ecological Niche Modeling
Description: Implements species distribution modeling and ecological niche
modeling, including: bias correction, spatial cross-validation, model
evaluation, raster interpolation, biotic "velocity" (speed and
direction of movement of a "mass" represented by a raster), interpolating
across a time series of rasters, and use of spatially imprecise records.
The heart of the package is a set of "training" functions which
automatically optimize model complexity based number of available
occurrences. These algorithms include MaxEnt, MaxNet, boosted regression
trees/gradient boosting machines, generalized additive models,
generalized linear models, natural splines, and random forests. To enhance
interoperability with other modeling packages, no new classes are created.
The package works with 'PROJ6' geodetic objects and coordinate reference
systems.
Author: Adam B. Smith [cre, aut]
Maintainer: Adam B. Smith <adam.smith@mobot.org>
Diff between enmSdmX versions 1.0.0 dated 2022-12-12 and 1.0.1 dated 2023-01-25
enmSdmX-1.0.0/enmSdmX/man/examples/pointGeoFold_examples.r |only enmSdmX-1.0.1/enmSdmX/DESCRIPTION | 10 - enmSdmX-1.0.1/enmSdmX/MD5 | 70 +++++----- enmSdmX-1.0.1/enmSdmX/NEWS.md | 7 + enmSdmX-1.0.1/enmSdmX/R/geoFold.r | 2 enmSdmX-1.0.1/enmSdmX/R/getCRS.r | 3 enmSdmX-1.0.1/enmSdmX/R/mad0.r | 5 enmSdmX-1.0.1/enmSdmX/R/mad1.r | 5 enmSdmX-1.0.1/enmSdmX/R/predictEnmSdm.r | 6 enmSdmX-1.0.1/enmSdmX/R/predictMaxNet.r | 3 enmSdmX-1.0.1/enmSdmX/R/summaryByCrossValid.r | 24 ++- enmSdmX-1.0.1/enmSdmX/R/trainByCrossValid.r | 8 - enmSdmX-1.0.1/enmSdmX/README.md | 20 +- enmSdmX-1.0.1/enmSdmX/man/bioticVelocity.Rd | 11 + enmSdmX-1.0.1/enmSdmX/man/examples/bioticVelocity_examples.r | 11 + enmSdmX-1.0.1/enmSdmX/man/examples/geoFold_examples.r |only enmSdmX-1.0.1/enmSdmX/man/examples/nearestEnvPoints_example.r | 19 ++ enmSdmX-1.0.1/enmSdmX/man/examples/nearestGeogPoints_example.r | 25 ++- enmSdmX-1.0.1/enmSdmX/man/examples/trainByCrossValid_examples.r | 11 - enmSdmX-1.0.1/enmSdmX/man/examples/trainXYZ_examples.r | 31 ++-- enmSdmX-1.0.1/enmSdmX/man/getCRS.Rd | 2 enmSdmX-1.0.1/enmSdmX/man/mad0.Rd | 5 enmSdmX-1.0.1/enmSdmX/man/mad1.Rd | 5 enmSdmX-1.0.1/enmSdmX/man/nearestEnvPoints.Rd | 19 ++ enmSdmX-1.0.1/enmSdmX/man/nearestGeogPoints.Rd | 25 ++- enmSdmX-1.0.1/enmSdmX/man/predictEnmSdm.Rd | 31 ++-- enmSdmX-1.0.1/enmSdmX/man/predictMaxEnt.Rd | 31 ++-- enmSdmX-1.0.1/enmSdmX/man/predictMaxNet.Rd | 31 ++-- enmSdmX-1.0.1/enmSdmX/man/summaryByCrossValid.Rd | 11 - enmSdmX-1.0.1/enmSdmX/man/trainBRT.Rd | 31 ++-- enmSdmX-1.0.1/enmSdmX/man/trainByCrossValid.Rd | 11 - enmSdmX-1.0.1/enmSdmX/man/trainGAM.Rd | 31 ++-- enmSdmX-1.0.1/enmSdmX/man/trainGLM.Rd | 31 ++-- enmSdmX-1.0.1/enmSdmX/man/trainMaxEnt.Rd | 31 ++-- enmSdmX-1.0.1/enmSdmX/man/trainMaxNet.Rd | 31 ++-- enmSdmX-1.0.1/enmSdmX/man/trainNS.Rd | 31 ++-- enmSdmX-1.0.1/enmSdmX/man/trainRF.Rd | 31 ++-- 37 files changed, 425 insertions(+), 234 deletions(-)
Title: Interface to 'Kusto'/'Azure Data Explorer'
Description: An interface to 'Azure Data Explorer', also known as 'Kusto', a fast, highly scalable data exploration service from Microsoft: <https://azure.microsoft.com/en-us/products/data-explorer/>. Includes 'DBI' and 'dplyr' interfaces, with the latter modelled after the 'dbplyr' package, whereby queries are translated from R into the native 'KQL' query language and executed lazily. On the admin side, the package extends the object framework provided by 'AzureRMR' to support creation and deletion of databases, and management of database principals. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut],
Alex Kyllo [aut, cre],
dbplyr development team [cph] ,
Microsoft [cph]
Maintainer: Alex Kyllo <jekyllo@microsoft.com>
Diff between AzureKusto versions 1.1.0 dated 2022-12-21 and 1.1.1 dated 2023-01-25
DESCRIPTION | 6 MD5 | 12 NEWS.md | 5 R/translate-kql.R | 22 - inst/doc/AzureKusto.html | 525 ++++++++++++---------------------------- man/base_scalar.Rd | 2 tests/testthat/test_translate.r | 71 +++++ 7 files changed, 257 insertions(+), 386 deletions(-)
Title: Read and Write 'Matlab' Files
Description: Read and write 'Matlab' MAT files from R. The 'rmatio'
package supports reading MAT version 4, MAT version 5 and MAT
compressed version 5. The 'rmatio' package can write version 5 MAT
files and version 5 files with variable compression.
Author: Stefan Widgren [aut, cre] ,
Christopher Hulbert [aut]
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>
Diff between rmatio versions 0.16.0 dated 2021-10-27 and 0.17.0 dated 2023-01-25
DESCRIPTION | 8 MD5 | 16 NEWS.md | 7 R/rmatio.R | 2 configure | 4361 +++++++++++++++++++++++++++-------------------------- configure.ac | 4 man/rmatio.Rd | 2 src/matio/config.h | 2 tools |only 9 files changed, 2265 insertions(+), 2137 deletions(-)
Title: Hidden Markov Cognitive Diagnosis Models for Learning
Description: Fitting hidden Markov models of learning under the cognitive diagnosis framework.
The estimation of the hidden Markov diagnostic classification model,
the first order hidden Markov model, the reduced-reparameterized unified learning model,
and the joint learning model for responses and response times.
Chen, Y., Culpepper, S. A., Wang, S., & Douglas, J. (2018) <doi:10.1177/0146621617721250>.
Wang, S., Yang, Y., Culpepper, S. A., & Douglas, J. A. (2018) <doi:10.3102/1076998617719727>.
Wang, S., Zhang, S., Douglas, J., & Culpepper, S. (2018) <doi:10.1080/15366367.2018.1435105>.
Zhang, S., Douglas, J. A., Wang, S. & Culpepper, S. A. (2019) <doi:10.1007/978-3-030-05584-4_24>.
Author: Susu Zhang [aut],
Shiyu Wang [aut],
Yinghan Chen [aut],
Sunbeom Kwon [aut, cre]
Maintainer: Sunbeom Kwon <sunbeom2@illinois.edu>
Diff between hmcdm versions 2.0.0 dated 2022-08-29 and 2.1.0 dated 2023-01-25
hmcdm-2.0.0/hmcdm/man/Q_list.Rd |only hmcdm-2.0.0/hmcdm/man/simDINA.Rd |only hmcdm-2.0.0/hmcdm/man/simNIDA.Rd |only hmcdm-2.0.0/hmcdm/man/simrRUM.Rd |only hmcdm-2.0.0/hmcdm/man/simulate_alphas_FOHM.Rd |only hmcdm-2.0.0/hmcdm/man/simulate_alphas_HO_joint.Rd |only hmcdm-2.0.0/hmcdm/man/simulate_alphas_HO_sep.Rd |only hmcdm-2.0.0/hmcdm/man/simulate_alphas_indept.Rd |only hmcdm-2.1.0/hmcdm/DESCRIPTION | 8 hmcdm-2.1.0/hmcdm/MD5 | 115 - hmcdm-2.1.0/hmcdm/NAMESPACE | 11 hmcdm-2.1.0/hmcdm/NEWS.md | 6 hmcdm-2.1.0/hmcdm/R/RcppExports.R | 523 +++---- hmcdm-2.1.0/hmcdm/R/Spatial_rotation_data.R | 14 hmcdm-2.1.0/hmcdm/R/pp_check.R | 53 hmcdm-2.1.0/hmcdm/R/summary.R | 332 ++-- hmcdm-2.1.0/hmcdm/build/partial.rdb |binary hmcdm-2.1.0/hmcdm/build/vignette.rds |binary hmcdm-2.1.0/hmcdm/data/Design_array.rda |only hmcdm-2.1.0/hmcdm/inst/doc/DINA_FOHM.R | 12 hmcdm-2.1.0/hmcdm/inst/doc/DINA_FOHM.Rmd | 12 hmcdm-2.1.0/hmcdm/inst/doc/DINA_FOHM.html | 301 +--- hmcdm-2.1.0/hmcdm/inst/doc/DINA_HO_RT_joint.R | 31 hmcdm-2.1.0/hmcdm/inst/doc/DINA_HO_RT_joint.Rmd | 31 hmcdm-2.1.0/hmcdm/inst/doc/DINA_HO_RT_joint.html | 516 +++---- hmcdm-2.1.0/hmcdm/inst/doc/DINA_HO_RT_sep.R | 36 hmcdm-2.1.0/hmcdm/inst/doc/DINA_HO_RT_sep.Rmd | 36 hmcdm-2.1.0/hmcdm/inst/doc/DINA_HO_RT_sep.html | 436 ++---- hmcdm-2.1.0/hmcdm/inst/doc/HMDCM.R | 49 hmcdm-2.1.0/hmcdm/inst/doc/HMDCM.Rmd | 54 hmcdm-2.1.0/hmcdm/inst/doc/HMDCM.html | 1325 ++++-------------- hmcdm-2.1.0/hmcdm/inst/doc/NIDA_indept.R | 29 hmcdm-2.1.0/hmcdm/inst/doc/NIDA_indept.Rmd | 29 hmcdm-2.1.0/hmcdm/inst/doc/NIDA_indept.html | 346 ++-- hmcdm-2.1.0/hmcdm/inst/doc/rRUM_indept.R | 22 hmcdm-2.1.0/hmcdm/inst/doc/rRUM_indept.Rmd | 22 hmcdm-2.1.0/hmcdm/inst/doc/rRUM_indept.html | 373 ++--- hmcdm-2.1.0/hmcdm/man/Design_array.Rd |only hmcdm-2.1.0/hmcdm/man/OddsRatio.Rd | 5 hmcdm-2.1.0/hmcdm/man/Q_list_g.Rd |only hmcdm-2.1.0/hmcdm/man/hmcdm.Rd | 22 hmcdm-2.1.0/hmcdm/man/pp_check.hmcdm.Rd | 2 hmcdm-2.1.0/hmcdm/man/sim_RT.Rd | 47 hmcdm-2.1.0/hmcdm/man/sim_alphas.Rd |only hmcdm-2.1.0/hmcdm/man/sim_hmcdm.Rd |only hmcdm-2.1.0/hmcdm/man/summary.hmcdm.Rd | 14 hmcdm-2.1.0/hmcdm/src/RcppExports.cpp | 486 +++--- hmcdm-2.1.0/hmcdm/src/basic_functions.cpp | 59 hmcdm-2.1.0/hmcdm/src/basic_functions.h | 4 hmcdm-2.1.0/hmcdm/src/extract_functions.cpp | 553 ++++--- hmcdm-2.1.0/hmcdm/src/extract_functions.h | 17 hmcdm-2.1.0/hmcdm/src/mcmc_functions.cpp | 1591 ++++++++++------------ hmcdm-2.1.0/hmcdm/src/mcmc_functions.h | 136 - hmcdm-2.1.0/hmcdm/src/resp_functions.cpp | 293 +--- hmcdm-2.1.0/hmcdm/src/resp_functions.h | 25 hmcdm-2.1.0/hmcdm/src/rt_functions.cpp | 123 - hmcdm-2.1.0/hmcdm/src/rt_functions.h | 14 hmcdm-2.1.0/hmcdm/src/trans_functions.cpp | 444 ++++-- hmcdm-2.1.0/hmcdm/src/trans_functions.h | 41 hmcdm-2.1.0/hmcdm/vignettes/DINA_FOHM.Rmd | 12 hmcdm-2.1.0/hmcdm/vignettes/DINA_HO_RT_joint.Rmd | 31 hmcdm-2.1.0/hmcdm/vignettes/DINA_HO_RT_sep.Rmd | 36 hmcdm-2.1.0/hmcdm/vignettes/HMDCM.Rmd | 54 hmcdm-2.1.0/hmcdm/vignettes/NIDA_indept.Rmd | 29 hmcdm-2.1.0/hmcdm/vignettes/rRUM_indept.Rmd | 22 65 files changed, 4051 insertions(+), 4731 deletions(-)
Title: Quantile-Quantile Plot Extensions for 'ggplot2'
Description: Extensions of 'ggplot2' Q-Q plot functionalities.
Author: Alexandre Almeida [aut],
Adam Loy [aut, cre],
Heike Hofmann [aut]
Maintainer: Adam Loy <loyad01@gmail.com>
Diff between qqplotr versions 0.0.5 dated 2021-04-23 and 0.0.6 dated 2023-01-25
DESCRIPTION | 10 MD5 | 52 ++-- NAMESPACE | 2 NEWS.md | 9 R/data.R | 2 R/geom_qq_band.R | 2 R/stat_pp_band.R | 43 +++ R/stat_pp_line.R | 2 R/stat_pp_point.R | 23 + R/stat_qq_band.R | 48 +++- R/stat_qq_line.R | 5 R/stat_qq_point.R | 23 + build/vignette.rds |binary inst/doc/introduction.Rmd | 2 inst/doc/introduction.html | 529 ++++++++++++++++++++++++++++++++++----------- man/StatPpBand.Rd | 2 man/StatPpLine.Rd | 2 man/StatQqBand.Rd | 2 man/StatQqLine.Rd | 2 man/longjump.Rd | 2 man/stat_pp_band.Rd | 42 ++- man/stat_pp_line.Rd | 20 + man/stat_pp_point.Rd | 28 +- man/stat_qq_band.Rd | 45 ++- man/stat_qq_line.Rd | 23 + man/stat_qq_point.Rd | 28 +- vignettes/introduction.Rmd | 2 27 files changed, 704 insertions(+), 246 deletions(-)
Title: Easily Work with 'Font Awesome' Icons
Description: Easily and flexibly insert 'Font Awesome' icons into 'R Markdown'
documents and 'Shiny' apps. These icons can be inserted into HTML content
through inline 'SVG' tags or 'i' tags. There is also a utility function for
exporting 'Font Awesome' icons as 'PNG' images for those situations where
raster graphics are needed.
Author: Richard Iannone [aut, cre] ,
Christophe Dervieux [ctb] ,
Winston Chang [ctb],
Dave Gandy [ctb, cph] ,
Posit Software, PBC [cph, fnd]
Maintainer: Richard Iannone <rich@rstudio.com>
Diff between fontawesome versions 0.4.0 dated 2022-10-25 and 0.5.0 dated 2023-01-25
DESCRIPTION | 14 ++++---- MD5 | 36 +++++++++++---------- NEWS.md | 8 ++++ R/fa.R | 34 +++++++++++-------- R/fa_brands.R | 2 - R/fa_version.R | 2 - R/sysdata.rda |binary inst/fontawesome/css/all.css | 17 +++++++-- inst/fontawesome/css/all.min.css | 4 +- inst/fontawesome/css/v4-shims.css | 2 - inst/fontawesome/css/v4-shims.min.css | 2 - inst/fontawesome/webfonts/fa-brands-400.ttf |binary inst/fontawesome/webfonts/fa-brands-400.woff2 |binary inst/fontawesome/webfonts/fa-regular-400.ttf |binary inst/fontawesome/webfonts/fa-regular-400.woff2 |binary inst/fontawesome/webfonts/fa-solid-900.ttf |binary inst/fontawesome/webfonts/fa-solid-900.woff2 |binary inst/fontawesome/webfonts/fa-v4compatibility.ttf |only inst/fontawesome/webfonts/fa-v4compatibility.woff2 |only man/fa.Rd | 4 ++ 20 files changed, 76 insertions(+), 49 deletions(-)
Title: Memory-Efficient Storage of Large Data on Disk and Fast Access
Functions
Description: The ff package provides data structures that are stored on
disk but behave (almost) as if they were in RAM by transparently
mapping only a section (pagesize) in main memory - the effective
virtual memory consumption per ff object. ff supports R's standard
atomic data types 'double', 'logical', 'raw' and 'integer' and
non-standard atomic types boolean (1 bit), quad (2 bit unsigned),
nibble (4 bit unsigned), byte (1 byte signed with NAs), ubyte (1 byte
unsigned), short (2 byte signed with NAs), ushort (2 byte unsigned),
single (4 byte float with NAs). For example 'quad' allows efficient
storage of genomic data as an 'A','T','G','C' factor. The unsigned
types support 'circular' arithmetic. There is also support for
close-to-atomic types 'factor', 'ordered', 'POSIXct', 'Date' and
custom close-to-atomic types.
ff not only has native C-support for vectors, matrices and arrays
with flexible dimorder (major column-order, major row-order and
generalizations for arrays). There is also a ffdf cla [...truncated...]
Author: Daniel Adler [aut],
Christian Glaeser [aut],
Oleg Nenadic [aut],
Jens Oehlschlaegel [aut, cre],
Martijn Schuemie [aut],
Walter Zucchini [aut]
Maintainer: Jens Oehlschlaegel <Jens.Oehlschlaegel@truecluster.com>
Diff between ff versions 4.0.7 dated 2022-05-06 and 4.0.9 dated 2023-01-25
ff-4.0.7/ff/inst |only ff-4.0.9/ff/DESCRIPTION | 8 ff-4.0.9/ff/MD5 | 35 ff-4.0.9/ff/NEWS | 19 ff-4.0.9/ff/R/ffsave.R | 6 ff-4.0.9/ff/configure | 6341 +++++++++++++++-------------------------- ff-4.0.9/ff/configure.ac | 15 ff-4.0.9/ff/man/dimnames.ff.rd | 2 ff-4.0.9/ff/man/ff.rd | 2 ff-4.0.9/ff/man/ffinfo.rd | 2 ff-4.0.9/ff/man/ffload.rd | 2 ff-4.0.9/ff/man/ffsave.rd | 2 ff-4.0.9/ff/man/names.ff.rd | 2 ff-4.0.9/ff/src/Makevars | 4 ff-4.0.9/ff/src/ff.h | 2 ff-4.0.9/ff/src/r_ff.c | 6 ff-4.0.9/ff/src/r_ff.h | 6 17 files changed, 2497 insertions(+), 3957 deletions(-)
Title: Gravitational and Magnetic Attraction of 3-D Vertical
Rectangular Prisms
Description: Computes the gravitational and magnetic anomalies generated by
3-D vertical rectangular prisms at specific observation points using the
method of Plouff (1976) <doi:10.1190/1.1440645>.
Author: C. Cronkite-Ratcliff [aut, cre]
,
G. Phelps [aut] ,
D. Scheirer [aut]
Maintainer: C. Cronkite-Ratcliff <ccronkite-ratcliff@usgs.gov>
Diff between gravmagsubs versions 1.0.0 dated 2023-01-13 and 1.0.1 dated 2023-01-25
DESCRIPTION | 7 ++++--- MD5 | 13 +++++++------ README.md |only inst/CITATION | 4 ++-- inst/doc/demo_vignette.Rmd | 3 +-- inst/doc/demo_vignette.html | 9 +++++---- man/references/references.bib | 19 ++++++++++++++++--- vignettes/demo_vignette.Rmd | 3 +-- 8 files changed, 36 insertions(+), 22 deletions(-)
Title: Handy File and String Manipulation
Description: This started out as a package for file and string
manipulation. Since then, the 'fs' and 'strex' packages emerged,
offering functionality previously given by this package (but it's done
better in these new ones). Those packages have hence almost pushed
'filesstrings' into extinction. However, it still has a small number
of unique, handy file manipulation functions which can be seen in the
vignette. One example is a function to remove spaces from all file
names in a directory.
Author: Rory Nolan [aut, cre, cph] ,
Sergi Padilla-Parra [ths]
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between filesstrings versions 3.2.3 dated 2022-08-09 and 3.2.4 dated 2023-01-25
DESCRIPTION | 14 ++--- MD5 | 6 +- NEWS.md | 6 ++ inst/doc/files.html | 128 +++++++++++++++++++++++++++------------------------- 4 files changed, 83 insertions(+), 71 deletions(-)
Title: Tools for the Analysis of Air Pollution Data
Description: Tools to analyse, interpret and understand air pollution data. Data are typically regular time series and air quality measurement, meteorological data and dispersion model output can be analysed. The package is described in Carslaw and Ropkins (2012, <doi:10.1016/j.envsoft.2011.09.008>) and subsequent papers.
Author: David Carslaw [aut, cre],
Jack Davison [aut],
Karl Ropkins [aut]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>
Diff between openair versions 2.13 dated 2023-01-06 and 2.14 dated 2023-01-25
openair-2.13/openair/NEWS |only openair-2.14/openair/DESCRIPTION | 8 - openair-2.14/openair/MD5 | 44 +++--- openair-2.14/openair/NEWS.md |only openair-2.14/openair/R/getMeta.R | 38 ++++- openair-2.14/openair/R/importAURN.R | 76 ++++++----- openair-2.14/openair/R/importUKAQ.R | 27 +++- openair-2.14/openair/R/percentileRose.R | 37 ++++- openair-2.14/openair/R/polarAnnulus.R | 195 ++++++++++++++++------------- openair-2.14/openair/R/polarDiff.R | 24 ++- openair-2.14/openair/R/polarFreq.R | 2 openair-2.14/openair/R/polarPlot.R | 49 +++++-- openair-2.14/openair/R/smoothTrend.R | 2 openair-2.14/openair/R/windRose.R | 77 ++++++++--- openair-2.14/openair/R/zzz.R | 3 openair-2.14/openair/man/importAURN.Rd | 72 +++++----- openair-2.14/openair/man/importMeta.Rd | 13 + openair-2.14/openair/man/percentileRose.Rd | 6 openair-2.14/openair/man/polarAnnulus.Rd | 6 openair-2.14/openair/man/polarDiff.Rd | 16 +- openair-2.14/openair/man/polarFreq.Rd | 6 openair-2.14/openair/man/polarPlot.Rd | 12 - openair-2.14/openair/man/pollutionRose.Rd | 6 openair-2.14/openair/man/windRose.Rd | 6 24 files changed, 472 insertions(+), 253 deletions(-)
Title: Model Selection with Bayesian Methods and Information Criteria
Description: Model selection and averaging for regression and mixtures, inclusing Bayesian model selection and information criteria (BIC, EBIC, AIC, GIC).
Author: David Rossell, John D. Cook, Donatello Telesca, P. Roebuck, Oriol Abril, Miquel Torrens
Maintainer: David Rossell <rosselldavid@gmail.com>
Diff between mombf versions 3.2.0 dated 2022-11-03 and 3.3.0 dated 2023-01-25
ChangeLog | 5 +++ DESCRIPTION | 13 ++++------ MD5 | 33 +++++++++++++------------ NAMESPACE | 5 ++- R/AllGenerics.R | 8 ++++++ R/infocriteria.R | 61 +++++++++++++++++++++++++++++++++++++++++++---- R/modelSelection.R | 3 +- R/modelSelectionGLM.R | 6 ++-- R/msPriorSpec.R | 15 ++++++++++- inst/doc/mombf.R | 5 +++ inst/doc/mombf.Rnw | 16 ++++++++---- inst/doc/mombf.pdf |binary man/bestBIC.Rd |only man/getBIC.Rd | 35 +++++++++++++++++++++++--- man/msPriorSpec-class.Rd | 7 +++++ src/modelSel.cpp | 15 +++++++---- src/modelSel.h | 2 - vignettes/mombf.Rnw | 16 ++++++++---- 18 files changed, 190 insertions(+), 55 deletions(-)
Title: 'IP' Address 'Lookup'
Description: A micro-package for getting your 'IP' address, either the
local/internal or the public/external one. Currently only 'IPv4' addresses
are supported.
Author: Drew Schmidt [aut, cre],
Wei-Chen Chen [aut]
Maintainer: Drew Schmidt <wrathematics@gmail.com>
Diff between getip versions 0.1-2 dated 2022-11-02 and 0.1-3 dated 2023-01-25
ChangeLog | 3 DESCRIPTION | 6 MD5 | 10 README.md | 2 configure | 2445 +++++++++++++++++++++++++++++------------------------------ configure.ac | 10 6 files changed, 1261 insertions(+), 1215 deletions(-)
Title: Working with 'Sapfluxnet' Project Data
Description: Access, modify, aggregate and plot data from the 'Sapfluxnet' project
(<http://sapfluxnet.creaf.cat>), the first global database of sap flow measurements.
Author: Victor Granda [aut, cre] ,
Rafael Poyatos [aut] ,
Victor Flo [aut] ,
Jacob Nelson [ctb] ,
Sapfluxnet Core Team [cph]
Maintainer: Victor Granda <victorgrandagarcia@gmail.com>
Diff between sapfluxnetr versions 0.1.3 dated 2021-11-19 and 0.1.4 dated 2023-01-25
DESCRIPTION | 10 MD5 | 44 - NEWS.md | 6 R/helpers.R | 4 R/metrics.R | 6 R/sfn_data_methods.R | 20 R/visualizations.R | 40 - README.md | 5 build/vignette.rds |binary inst/doc/custom-aggregation.html | 641 ++++++++++++------ inst/doc/data-flags.html | 259 ++++++- inst/doc/memory-and-parallelization.html | 353 ++++++++-- inst/doc/metadata-and-data-units.html | 416 +++++++++-- inst/doc/sapfluxnetr-quick-guide.html | 936 ++++++++++++++++++-------- inst/doc/sfn-data-classes.Rmd | 2 inst/doc/sfn-data-classes.html | 1092 +++++++++++++++++++------------ man/sfn_replacement_methods.Rd | 2 man/time_at_events.Rd | 6 tests/testthat/test-metrics.R | 18 tests/testthat/test-sfn_data_classes.R | 8 tests/testthat/test-sfn_dplyr_methods.R | 30 tests/testthat/test-visualizations.R | 26 vignettes/sfn-data-classes.Rmd | 2 23 files changed, 2755 insertions(+), 1171 deletions(-)
Title: An Simplified Implementation of the 'network' Package
Functionality
Description: An implementation of some of the core 'network' package functionality based on a
simplified data structure that is faster in many research applications. This package is designed
for back-end use in the 'statnet' family of packages, including 'EpiModel'. Support is provided for
binary and weighted, directed and undirected, bipartite and unipartite networks; no current
support for multigraphs, hypergraphs, or loops.
Author: Samuel Jenness [cre, aut],
Steven M. Goodreau [aut],
Martina Morris [aut],
Adrien Le Guillou [aut],
Chad Klumb [aut],
Skye Bender-deMoll [ctb]
Maintainer: Samuel Jenness <samuel.m.jenness@emory.edu>
Diff between networkLite versions 1.0.0 dated 2023-01-24 and 1.0.1 dated 2023-01-25
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ R/networkLite-package.R | 4 ++-- R/utils.R | 2 +- man/atomize.Rd | 2 +- man/networkLite-package.Rd | 4 ++-- tests/testthat/test-networkLite.R | 9 ++++++++- 7 files changed, 26 insertions(+), 19 deletions(-)
Title: Harmonizing CN8 and PC8 Product Codes
Description: Several functions are provided to harmonize CN8 (Combined Nomenclature
8 digits) and PC8 (Production Communautaire 8 digits) product codes over
time and the classification systems HS6 and BEC. Harmonization of CN8
codes are possible by default from 1995 to 2022 and of PC8 from 2001 to
2021, respectively.
Author: Christoph Baumgartner [cre, aut]
,
Stjepan Srhoj [aut] ,
Janette Walde [aut]
Maintainer: Christoph Baumgartner <Christoph.Baumgartner@uibk.ac.at>
Diff between harmonizer versions 0.3.1 dated 2022-11-23 and 0.3.2 dated 2023-01-25
DESCRIPTION | 10 - MD5 | 41 ++--- NEWS.md | 8 + R/get_data_directory.R | 12 - R/harmonize_cn8.R | 326 +++++++++++++++++++++++++++---------------- R/harmonize_pc8.R | 343 ++++++++++++++++++++++++++++------------------ R/history_matrix_cn8.R | 288 +++++++++++++++++++++++++++++++++++--- R/history_matrix_pc8.R | 285 +++++++++++++++++++++++++++++++++++--- R/utilize_cn8.R | 4 R/utilize_pc8.R | 4 inst/doc/harmonizer.Rmd | 36 ++-- inst/doc/harmonizer.html | 145 ++++++++++--------- inst/extdata/runtime |only man/cn8_to_bec.Rd | 2 man/harmonize_cn8.Rd | 8 - man/harmonize_pc8.Rd | 8 - man/history_martix_cn8.Rd | 6 man/history_martix_pc8.Rd | 6 man/pc8_to_bec.Rd | 2 man/utilize_cn8.Rd | 7 man/utilize_pc8.Rd | 7 vignettes/harmonizer.Rmd | 36 ++-- 22 files changed, 1122 insertions(+), 462 deletions(-)
Title: Scrubbing and Other Data Cleaning Routines for fMRI
Description: Data-driven fMRI denoising with projection scrubbing (Pham et al
(2022) <arXiv:2108.00319>). Also includes routines for DVARS (Derivatives
VARianceS) (Afyouni and Nichols (2018)
<doi:10.1016/j.neuroimage.2017.12.098>), motion scrubbing (Power et al
(2012) <doi:10.1016/j.neuroimage.2011.10.018>), aCompCor (anatomical
Components Correction) (Muschelli et al (2014)
<doi:10.1016/j.neuroimage.2014.03.028>), detrending, and nuisance
regression. Projection scrubbing is also applicable to other
outlier detection tasks involving high-dimensional data.
Author: Amanda Mejia [aut, cre],
John Muschelli [aut] ,
Damon Pham [aut] ,
Daniel McDonald [ctb]
Maintainer: Amanda Mejia <mandy.mejia@gmail.com>
Diff between fMRIscrub versions 0.11.2 dated 2022-07-08 and 0.12.1 dated 2023-01-25
fMRIscrub-0.11.2/fMRIscrub/R/CompCor.R |only fMRIscrub-0.11.2/fMRIscrub/R/CompCor_HCP.R |only fMRIscrub-0.11.2/fMRIscrub/R/DCT_FFT_detrending.R |only fMRIscrub-0.11.2/fMRIscrub/R/bandstop_filter.R |only fMRIscrub-0.11.2/fMRIscrub/R/carpetplot.R |only fMRIscrub-0.11.2/fMRIscrub/R/format_data.R |only fMRIscrub-0.11.2/fMRIscrub/R/fsl_bptf.R |only fMRIscrub-0.11.2/fMRIscrub/R/nuisance_regression.R |only fMRIscrub-0.11.2/fMRIscrub/R/utils.R |only fMRIscrub-0.11.2/fMRIscrub/man/CompCor.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/CompCor.noise_comps.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/CompCor_HCP.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/Mode.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/as.matrix2.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/bandstop_filter.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/carpetplot.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/carpetplot_stack.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/check_design_matrix.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/dct_bases.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/dct_convert.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/detrend.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/erode_vol.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/fft_detrend.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/format_data.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/fsl_bptf.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/get_NIFTI_ROI_masks.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/hat_matrix.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/infer_BOLD_format.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/is_constant.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/is_integer.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/neighbor_counts.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/nuisance_regression.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/pct_sig.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/read_nifti.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/scale_med.Rd |only fMRIscrub-0.11.2/fMRIscrub/man/unmask_vol.Rd |only fMRIscrub-0.12.1/fMRIscrub/DESCRIPTION | 16 - fMRIscrub-0.12.1/fMRIscrub/MD5 | 78 +----- fMRIscrub-0.12.1/fMRIscrub/NAMESPACE | 26 -- fMRIscrub-0.12.1/fMRIscrub/NEWS.md | 18 - fMRIscrub-0.12.1/fMRIscrub/R/DVARS.R | 57 ----- fMRIscrub-0.12.1/fMRIscrub/R/FD.R | 1 fMRIscrub-0.12.1/fMRIscrub/R/artifact_images.R | 61 ----- fMRIscrub-0.12.1/fMRIscrub/R/leverage.R | 1 fMRIscrub-0.12.1/fMRIscrub/R/pscrub.R | 27 +- fMRIscrub-0.12.1/fMRIscrub/R/pscrub_from_multi.R | 26 +- fMRIscrub-0.12.1/fMRIscrub/R/pscrub_multi.R | 112 +++++----- fMRIscrub-0.12.1/fMRIscrub/R/rob_stabilize.R | 8 fMRIscrub-0.12.1/fMRIscrub/R/rox_args_docs.R | 6 fMRIscrub-0.12.1/fMRIscrub/README.md | 7 fMRIscrub-0.12.1/fMRIscrub/man/DVARS.Rd | 2 fMRIscrub-0.12.1/fMRIscrub/man/data_CompCor_Params.Rd | 4 fMRIscrub-0.12.1/fMRIscrub/man/pscrub.Rd | 14 - fMRIscrub-0.12.1/fMRIscrub/man/pscrub_Params.Rd | 2 fMRIscrub-0.12.1/fMRIscrub/man/pscrub_multi.Rd | 2 fMRIscrub-0.12.1/fMRIscrub/tests/testthat.R | 20 - fMRIscrub-0.12.1/fMRIscrub/tests/testthat/test-test_all_methods.R | 8 fMRIscrub-0.12.1/fMRIscrub/tests/testthat/test-test_scrubbing.R | 18 - 58 files changed, 190 insertions(+), 324 deletions(-)
Title: Computing Sensitivity at a Fix Value of Specificity and Vice
Versa as Well as Bootstrap Metrics for ROC Curves
Description: For a binary classification the adjusted sensitivity and specificity
are measured for a given fixed threshold. If the threshold for either
sensitivity or specificity is not given, the crossing point between
the sensitivity and specificity curves are returned. For bootstrap
procedures, mean and CI bootstrap values of sensitivity, specificity,
crossing point between specificity and specificity as well as AUC
and AUCPR can be evaluated.
Author: E. F. Haghish
Maintainer: E. F. Haghish <haghish@uio.no>
Diff between adjROC versions 0.2.0 dated 2022-03-25 and 0.3 dated 2023-01-25
DESCRIPTION | 20 +++++++++++++------- MD5 | 20 ++++++++++++++++---- NAMESPACE | 6 ++++++ R/adjroc.R | 2 +- R/boot.adjroc.R |only R/boot.roc.R |only README.md | 12 +++++++++++- man/boot.adjroc.Rd |only man/boot.roc.Rd |only man/figures |only 10 files changed, 47 insertions(+), 13 deletions(-)
Title: Sequential Permutation Testing of Random Forest Variable
Importance Measures
Description: Sequential permutation testing for statistical
significance of predictors in random forests. The main function
of the package is rfvimptest(), which allows to test for the
statistical significance of predictors in random forests using different
(sequential) permutation test strategies. The advantage of
sequential over conventional permutation tests is that they
are computationally considerably less intensive, as the sequential
procedure is stopped as soon as there is sufficient evidence
for either the null or the alternative hypothesis.
Author: Alexander Hapfelmeier [aut],
Roman Hornung [aut, cre]
Maintainer: Roman Hornung <hornung@ibe.med.uni-muenchen.de>
Diff between rfvimptest versions 0.1.2 dated 2022-06-07 and 0.1.3 dated 2023-01-25
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/allinone.R | 5 +++++ R/rfvimptest.R | 5 +++++ build/partial.rdb |binary 5 files changed, 18 insertions(+), 8 deletions(-)
Title: 'Rcpp' Bindings to Parser for "Tom's Obvious Markup Language"
Description: The configuration format defined by 'TOML' (which expands to
"Tom's Obvious Markup Language") specifies an excellent format
(described at <https://toml.io/en/>) suitable for both human editing
as well as the common uses of a machine-readable format. This package
uses 'Rcpp' to connect to the 'toml++' parser written by Mark Gillard
to R.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppTOML versions 0.2.0 dated 2023-01-10 and 0.2.1 dated 2023-01-25
ChangeLog | 13 ++++++ DESCRIPTION | 14 +++--- MD5 | 12 ++--- README.md | 27 +++++++++---- inst/NEWS.Rd | 7 +++ inst/include/toml++/impl/preprocessor.h | 65 -------------------------------- src/Makevars | 2 7 files changed, 53 insertions(+), 87 deletions(-)
Title: Version-Control for CRAN, GitHub, and GitLab Packages
Description: Make R scripts reproducible, by ensuring that
every time a given script is run, the same version of the used packages are
loaded (instead of whichever version the user running the script happens to
have installed). This is achieved by using the command
groundhog.library() instead of the base command library(), and including a
date in the call. The date is used to call on the same version of the
package every time (the most recent version available at that date).
Load packages from CRAN, GitHub, or Gitlab.
=======================================
Note: groundhog relied on Microsoft's MRAN archive which is being discontinued.
This version of groundhog is transitioning away from MRAN, relying on it only for
dates prior to Jan 31, 2023. A future release of groundhog, v2.3.0,
expected by May 2023, will discontinue relying on MRAN entirely.
Author: Uri Simonsohn [aut, cre] ,
Hugo Gruson [ctb, aut]
Maintainer: Uri Simonsohn <urisohn@gmail.com>
Diff between groundhog versions 2.1.0 dated 2022-10-02 and 2.2.0 dated 2023-01-25
DESCRIPTION | 15 ++++++++++----- MD5 | 12 ++++++------ R/get.date.for.install.binary.R | 7 ++++++- R/r.version.check.R | 1 - inst/cran.times.rds |binary inst/cran.toc.rds |binary inst/missing.mran.dates.rds |binary 7 files changed, 22 insertions(+), 13 deletions(-)
Title: Fishery Science Methods and Models
Description: Functions for applying a wide range of fisheries stock assessment methods.
Author: Gary A. Nelson <gary.nelson@mass.gov>
Maintainer: Gary A. Nelson <gary.nelson@mass.gov>
Diff between fishmethods versions 1.11-3 dated 2022-01-05 and 1.12-0 dated 2023-01-25
DESCRIPTION | 16 MD5 | 36 + NAMESPACE | 4 R/clus.vb.fit.R | 5 R/ep_growth.R |only R/grotagplus.R | 5 R/growhamp.R | 2 R/growth.R | 652 +++++++++++++++--------------- R/irm_cr.R | 1149 +++++++++++++++++++++++++++--------------------------- R/irm_h.R | 14 R/remp.R | 5 R/tag_model_avg.R | 29 - R/vbfr.R | 107 ++--- data/ep.data.rda |only man/ep.data.Rd |only man/ep_growth.Rd |only man/grotagplus.Rd | 2 man/irm_cr.Rd | 2 src |only 19 files changed, 1022 insertions(+), 1006 deletions(-)
Title: Create Tidy Data Frames of Marginal Effects for 'ggplot' from
Model Outputs
Description: Compute marginal effects and adjusted predictions from statistical
models and returns the result as tidy data frames. These data frames are
ready to use with the 'ggplot2'-package. Effects and predictions can be
calculated for many different models. Interaction terms, splines and
polynomial terms are also supported. The main functions are ggpredict(),
ggemmeans() and ggeffect(). There is a generic plot()-method to plot the
results using 'ggplot2'.
Author: Daniel Luedecke [aut, cre] ,
Frederik Aust [ctb] ,
Sam Crawley [ctb] ,
Mattan S. Ben-Shachar [ctb]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between ggeffects versions 1.1.4 dated 2022-10-23 and 1.1.5 dated 2023-01-25
DESCRIPTION | 10 +- MD5 | 90 +++++++++++------------ NEWS.md | 9 ++ R/collapse_re_data.R | 2 R/emmeans_prediction_data.R | 4 - R/get_predictions_MCMCglmm.R | 2 R/get_predictions_MixMod.R | 2 R/get_predictions_clmm.R | 2 R/get_predictions_gee.R | 2 R/get_predictions_glmmTMB.R | 2 R/get_predictions_logistf.R | 2 R/get_predictions_mlogit.R | 2 R/get_predictions_stan.R | 2 R/get_predictions_zeroinfl.R | 2 R/ggeffect.R | 2 R/ggemmeans.R | 5 - R/ggpredict.R | 16 ++-- R/new_data.R | 2 R/plot.R | 2 R/predict_zero_inflation.R | 2 R/simulate_predictions.R | 2 R/standard_error_predictions.R | 2 R/utils_ggpredict.R | 6 - R/utils_is_empty.R | 42 +++++------ R/vcov.R | 2 build/vignette.rds |binary inst/doc/content.Rmd | 92 ++++++++++++------------ inst/doc/content.html | 18 ++-- man/collapse_by_group.Rd | 90 +++++++++++------------ man/efc.Rd | 42 +++++------ man/fish.Rd | 20 ++--- man/ggpredict.Rd | 10 +- man/lung2.Rd | 24 +++--- man/new_data.Rd | 104 +++++++++++++-------------- man/pool_predictions.Rd | 78 ++++++++++---------- man/vcov.Rd | 132 +++++++++++++++++------------------ tests/testthat/test-brms-categ-cum.R | 16 ++-- tests/testthat/test-condition.R | 10 +- tests/testthat/test-glm.R | 13 ++- tests/testthat/test-glmer.R | 2 tests/testthat/test-glmmTMB.R | 4 - tests/testthat/test-glmrob_base.R | 3 tests/testthat/test-lrm.R | 3 tests/testthat/test-plot.R | 34 ++++----- tests/testthat/test-rstanarm.R | 8 +- vignettes/content.Rmd | 92 ++++++++++++------------ 46 files changed, 520 insertions(+), 491 deletions(-)
Title: Graphics in the Context of Analyzing High-Throughput Data
Description: Additional options for making graphics in the context of analyzing high-throughput data are available here.
This includes automatic segmenting of the current device (eg window) to accommodate multiple new plots,
automatic checking for optimal location of legends in plots, small histograms to insert as legends,
histograms re-transforming axis labels to linear when plotting log2-transformed data,
a violin-plot <doi:10.1080/00031305.1998.10480559> function for a wide variety of input-formats,
principal components analysis (PCA) <doi:10.1080/14786440109462720> with bag-plots <doi:10.1080/00031305.1999.10474494> to highlight and compare the center areas for groups of samples,
generic MA-plots (differential- versus average-value plots) <doi:10.1093/nar/30.4.e15>,
staggered count plots and generation of mouse-over interactive html pages.
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@gmail.com>
Diff between wrGraph versions 1.3.1 dated 2022-03-31 and 1.3.2 dated 2023-01-25
DESCRIPTION | 8 MD5 | 44 +- NAMESPACE | 1 R/MAplotW.R | 9 R/VolcanoPlotW.R | 354 ++++++++++------- R/addBagPlot.R | 65 +-- R/cumFrqPlot.R | 6 R/histW.R | 13 R/partitionPlot.R | 14 R/plotPCAw.R | 389 ++++++++++--------- R/vioplotW.R | 371 +++++++++++++++--- build/vignette.rds |binary inst/doc/wrGraphVignette1.R | 4 inst/doc/wrGraphVignette1.Rmd | 5 inst/doc/wrGraphVignette1.html | 821 +++++++++++++++++++++++++++++++---------- man/MAplotW.Rd | 3 man/VolcanoPlotW.Rd | 18 man/addBagPlot.Rd | 13 man/cumFrqPlot.Rd | 3 man/partitionPlot.Rd | 6 man/plotPCAw.Rd | 38 + man/vioplotW.Rd | 15 vignettes/wrGraphVignette1.Rmd | 5 23 files changed, 1528 insertions(+), 677 deletions(-)
Title: Machine Learning and Inference for Topological Data Analysis
Description: Topological data analysis is a powerful tool for finding non-linear global structure
in whole datasets. 'TDApplied' aims to bridge topological data analysis with data, statistical
and machine learning practitioners so that more analyses may benefit from the
power of topological data analysis. The main tool of topological data analysis is
persistent homology, which computes a shape descriptor of a dataset, called
a persistence diagram. There are five goals of this package: (1) deliver a fast implementation
of persistent homology via a python interface, (2) convert persistence diagrams
computed using the two main R packages for topological data analysis into a data frame,
(3) implement fast versions of both distance and kernel calculations
for pairs of persistence diagrams, (4) contribute tools for the interpretation of
persistence diagrams, and (5) provide parallelized methods for machine learning
and inference for persistence diagrams.
Author: Shael Brown [aut, cre],
Dr. Reza Farivar [aut, fnd]
Maintainer: Shael Brown <shaelebrown@gmail.com>
Diff between TDApplied versions 2.0.3 dated 2023-01-15 and 2.0.4 dated 2023-01-25
DESCRIPTION | 6 MD5 | 80 ++++----- NEWS.md | 3 R/bootstrap.R | 15 + R/convert.R | 23 +- R/distance_calculations.R | 54 +++--- R/inference.R | 32 ++- R/kernel_calculations.R | 46 +++-- R/machine_learning.R | 263 +++++++++++++++++--------------- R/plot.R | 34 ++-- build/partial.rdb |binary inst/doc/ML_and_Inference.R | 6 inst/doc/ML_and_Inference.Rmd | 10 - inst/doc/ML_and_Inference.html | 6 man/TDApplied.Rd | 21 +- man/bootstrap_persistence_thresholds.Rd | 15 + man/diagram_distance.Rd | 25 +-- man/diagram_kernel.Rd | 21 +- man/diagram_kkmeans.Rd | 19 +- man/diagram_kpca.Rd | 35 ++-- man/diagram_ksvm.Rd | 35 ++-- man/diagram_mds.Rd | 19 +- man/diagram_to_df.Rd | 23 +- man/distance_matrix.Rd | 29 +-- man/gram_matrix.Rd | 25 +-- man/independence_test.Rd | 23 +- man/permutation_test.Rd | 9 - man/plot_diagram.Rd | 39 ++-- man/predict_diagram_kkmeans.Rd | 35 ++-- man/predict_diagram_kpca.Rd | 51 +++--- man/predict_diagram_ksvm.Rd | 51 +++--- tests/testthat/test-MDS.R | 3 tests/testthat/test-bootstrap.R | 5 tests/testthat/test-convert.R | 2 tests/testthat/test-distance.R | 2 tests/testthat/test-inference.R | 7 tests/testthat/test-kernel.R | 2 tests/testthat/test-kmeans.R | 4 tests/testthat/test-pca.R | 5 tests/testthat/test-svm.R | 4 vignettes/ML_and_Inference.Rmd | 10 - 41 files changed, 616 insertions(+), 481 deletions(-)
Title: Traveling Salesperson Problem (TSP)
Description: Basic infrastructure and some algorithms for the traveling
salesperson problem (also traveling salesman problem; TSP).
The package provides some simple algorithms and
an interface to the Concorde TSP solver and its implementation of the
Chained-Lin-Kernighan heuristic. The code for Concorde
itself is not included in the package and has to be obtained separately.
Hahsler and Hornik (2007) <doi:10.18637/jss.v023.i02>.
Author: Michael Hahsler [aut, cre, cph]
,
Kurt Hornik [aut, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between TSP versions 1.2-1 dated 2022-07-14 and 1.2-2 dated 2023-01-25
DESCRIPTION | 8 ++++---- MD5 | 31 ++++++++++++++++--------------- NEWS.md | 21 +++++++++++++-------- R/solve_TSP.R | 1 + R/tsp_concorde.R | 13 ++++++------- README.md | 2 +- build/partial.rdb |binary build/vignette.rds |binary data/USCA312.rda |binary data/USCA312_GPS.rda |binary data/USCA50.rda |binary inst/doc/TSP.pdf |binary man/figures |only src/tour_length.c | 3 +-- tests/testthat/test-TSPLIB.R | 2 +- tests/testthat/test-concorde.R | 22 ++++++++++++---------- tests/testthat/test-insert_cut_etc.R | 4 +++- 17 files changed, 58 insertions(+), 49 deletions(-)
Title: Random Generation Functionality for the 'spatstat' Family
Description: Functionality for random generation of spatial data in the 'spatstat' family of packages.
Generates random spatial patterns of points according to many simple rules (complete spatial randomness,
Poisson, binomial, random grid, systematic, cell), randomised alteration of patterns
(thinning, random shift, jittering), simulated realisations of random point processes including
simple sequential inhibition, Matern inhibition models, Neyman-Scott cluster processes
(using direct, Brix-Kendall, or hybrid algorithms),
log-Gaussian Cox processes, product shot noise cluster processes
and Gibbs point processes (using Metropolis-Hastings birth-death-shift algorithm,
alternating Gibbs sampler, or coupling-from-the-past perfect simulation).
Also generates random spatial patterns of line segments,
random tessellations, and random images (random noise, random mosaics).
Excludes random generation on a linear network,
which is covered by the separate package 'spatstat.linnet'.
Author: Adrian Baddeley [aut, cre] ,
Rolf Turner [aut] ,
Ege Rubak [aut] ,
Kasper Klitgaard Berthelsen [ctb],
Ya-Mei Chang [ctb],
Tilman Davies [ctb],
Ute Hahn [ctb],
Abdollah Jalilian [ctb],
Dominic Schuhmacher [ctb],
Rasmus Plenge Waagepetersen [ctb]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.random versions 3.1-2 dated 2023-01-24 and 3.1-3 dated 2023-01-25
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- NEWS | 8 ++++++++ R/clusterinfo.R | 16 ++++++++++------ R/rcauchy.R | 10 +++++----- R/rthomas.R | 8 ++++---- R/truncpois.R | 8 ++++---- inst/doc/packagesizes.txt | 2 +- man/rtemper.Rd | 2 +- man/spatstat.random-internal.Rd | 6 ++++-- src/init.c | 8 ++++---- src/proto.h | 6 +++--- src/rcauchy.h | 17 +++++++++-------- src/rmatclus.h | 11 ++++++----- src/rthomas.h | 19 ++++++++++--------- src/rtruncpois.c | 18 +++++++++++------- 16 files changed, 99 insertions(+), 78 deletions(-)
More information about spatstat.random at CRAN
Permanent link
Title: A General-Purpose Package for Dynamic Report Generation in R
Description: Provides a general-purpose tool for dynamic report generation in R
using Literate Programming techniques.
Author: Yihui Xie [aut, cre] ,
Abhraneel Sarma [ctb],
Adam Vogt [ctb],
Alastair Andrew [ctb],
Alex Zvoleff [ctb],
Amar Al-Zubaidi [ctb],
Andre Simon [ctb] ,
Aron Atkins [ctb],
Aaron Wolen [ctb],
Ashley Manton [ctb],
Atsushi Yasumoto [ctb] ,
Ben Baumer [ctb], [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between knitr versions 1.41 dated 2022-11-18 and 1.42 dated 2023-01-25
DESCRIPTION | 15 ++++--- MD5 | 66 ++++++++++++++++++----------------- NAMESPACE | 1 R/block.R | 42 ++++++++++++---------- R/citation.R | 2 - R/concordance.R | 14 +++++-- R/engine.R | 7 ++- R/header.R | 10 ++--- R/hooks-extra.R | 2 - R/hooks.R | 4 -- R/output.R | 23 ++++++------ R/package.R | 2 - R/parser.R | 61 +++++++++++++------------------- R/pattern.R | 2 - R/plot.R | 11 +---- R/spin.R | 4 +- R/table.R | 9 +--- R/template.R | 12 +++--- R/utils-conversion.R | 13 +++++- R/utils-rd2html.R | 2 - R/utils-string.R |only R/utils-upload.R | 3 - R/utils.R | 53 ++++++++++++++++++++++++---- inst/CITATION | 1 inst/doc/datatables.html | 22 +++++++++++ inst/doc/knit_expand.html | 26 ++++++++++++- inst/doc/knit_print.html | 12 +++--- inst/doc/knitr-intro.html | 10 ++--- inst/doc/knitr-markdown.html | 24 ++++++++++++ inst/doc/knitr-refcard.pdf |binary inst/examples/child/knitr-child2.Rmd |only inst/examples/child/knitr-main.Rmd | 12 ++++++ man/convert_chunk_header.Rd | 2 - man/imgur_upload.Rd | 3 - tests/testit/test-block.R | 13 ++++++ 35 files changed, 303 insertions(+), 180 deletions(-)
Title: Advanced and Fast Data Transformation
Description: A C/C++ based package for advanced data transformation and
statistical computing in R that is extremely fast, class-agnostic,
and programmer friendly through a flexible and robust API. Core functionality
includes a rich set of S3 generic grouped and weighted statistical functions
for vectors, matrices and data frames, which provide efficient low-level
vectorizations, OpenMP multithreading, and skip missing values by default.
These are integrated with fast grouping and ordering algorithms (also callable
from C), and efficient data manipulation functions. The package also provides
a flexible and rigorous approach to time series and panel data in R. It further
includes fast functions for common statistical procedures, detailed (grouped,
weighted) summary statistics, powerful tools to work with nested data, fast
data object conversions, functions for memory efficient R programming, and
helpers to effectively deal with variable labels, attributes, and missing data.
It is well integrated wit [...truncated...]
Author: Sebastian Krantz [aut, cre],
Matt Dowle [ctb],
Arun Srinivasan [ctb],
Morgan Jacob [ctb],
Dirk Eddelbuettel [ctb],
Laurent Berge [ctb],
Kevin Tappe [ctb],
R Core Team and contributors worldwide [ctb],
Martyn Plummer [cph],
1999-2016 The R Core Team [ [...truncated...]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>
Diff between collapse versions 1.9.0 dated 2023-01-15 and 1.9.2 dated 2023-01-25
DESCRIPTION | 21 +++--- MD5 | 116 +++++++++++++++++------------------ NAMESPACE | 6 + NEWS.md | 25 ++++++- R/GRP.R | 2 R/descr.R | 18 ++--- R/fFtest.R | 2 R/fbetween_fwithin.R | 48 +++++++------- R/fcumsum.R | 12 +-- R/ffirst.R | 8 +- R/fhdbetween_fhdwithin.R | 40 ++++++------ R/flast.R | 8 +- R/fmean.R | 10 +-- R/fmin_fmax.R | 16 ++-- R/fmode.R | 10 +-- R/fndistinct.R | 8 +- R/fnth_fmedian.R | 14 ++-- R/fprod.R | 8 +- R/fscale.R | 24 +++---- R/fsum.R | 10 +-- R/fvar_fsd.R | 16 ++-- R/global_macros.R | 35 ++++++---- R/my_RcppExports.R | 6 + R/qsu.R | 42 ++++++++++++ R/small_helper.R | 5 - R/zzz.R | 8 +- inst/doc/collapse_documentation.Rmd | 2 inst/doc/collapse_documentation.html | 8 +- man/collap.Rd | 2 man/collapse-documentation.Rd | 14 ---- man/collapse-options.Rd | 50 +++++++++++++-- man/collapse-package.Rd | 2 man/fbetween_fwithin.Rd | 54 ++++++++-------- man/fcumsum.Rd | 13 ++- man/fdist.Rd | 2 man/ffirst_flast.Rd | 16 ++-- man/fhdbetween_fhdwithin.Rd | 44 ++++++------- man/fmean.Rd | 16 ++-- man/fmin_fmax.Rd | 16 ++-- man/fmode.Rd | 16 ++-- man/fndistinct.Rd | 16 ++-- man/fnth_fmedian.Rd | 20 +++--- man/fprod.Rd | 8 +- man/fquantile.Rd | 8 +- man/fscale.Rd | 24 +++---- man/fsum.Rd | 16 ++-- man/fvar_fsd.Rd | 16 ++-- man/qsu.Rd | 11 ++- man/summary-statistics.Rd | 4 - src/fmean.c | 40 ++++++++++-- src/fmode.c | 13 +++ src/fndistinct.c | 2 src/fnth_fmedian_fquantile.c | 10 +-- src/fsum.c | 43 +++++++++++- src/programming.c | 22 +++--- src/seqid_groupid.cpp | 4 - tests/testthat.R | 2 tests/testthat/test-misc.R | 13 +++ vignettes/collapse_documentation.Rmd | 2 59 files changed, 627 insertions(+), 420 deletions(-)
Title: Modelling Multivariate Data with Additive Bayesian Networks
Description: Bayesian network analysis is a form of probabilistic graphical models which derives from empirical data a directed acyclic graph, DAG, describing the dependency structure between random variables.
An additive Bayesian network model consists of a form of a DAG where each node comprises a generalized linear model, GLM. Additive Bayesian network models are equivalent to Bayesian multivariate regression using graphical modeling; they generalises the usual multivariable regression, GLM, to multiple dependent variables.
'abn' provides routines to help determine optimal Bayesian network models for a given data set, where these models are used to identify statistical dependencies in messy, complex data. The additive formulation of these models is equivalent to multivariate generalized linear modeling (including mixed models with iid random effects).
The usual term to describe this model selection process is structure discovery.
The core functionality is concerned with model selection - determi [...truncated...]
Author: Reinhard Furrer [cre, aut] ,
Gilles Kratzer [aut] ,
Fraser Iain Lewis [aut] ,
Marta Pittavino [ctb] ,
Kalina Cherneva [ctr]
Maintainer: Reinhard Furrer <reinhard.furrer@math.uzh.ch>
Diff between abn versions 2.7-1 dated 2022-04-25 and 2.7-3 dated 2023-01-25
abn-2.7-1/abn/tests/testthat/Rplots.pdf |only abn-2.7-1/abn/tests/testthat/testthat-problems.rds |only abn-2.7-3/abn/ChangeLog | 15 +++ abn-2.7-3/abn/DESCRIPTION | 16 ++-- abn-2.7-3/abn/MD5 | 33 ++++---- abn-2.7-3/abn/R/abn-internal.R | 1 abn-2.7-3/abn/R/build_score_cache_mle.R | 44 +++++++---- abn-2.7-3/abn/R/fitabn_mle.R | 12 ++- abn-2.7-3/abn/build/partial.rdb |only abn-2.7-3/abn/build/vignette.rds |binary abn-2.7-3/abn/configure.ac | 2 abn-2.7-3/abn/inst/CITATION | 62 +++++++-------- abn-2.7-3/abn/man/abn-package.Rd | 13 +-- abn-2.7-3/abn/man/adg-dataset.Rd | 6 + abn-2.7-3/abn/man/build_score_cache.Rd | 5 - abn-2.7-3/abn/man/fitabn.Rd | 5 - abn-2.7-3/abn/src/irls_binomial_fast_br.cpp | 40 ++++++---- abn-2.7-3/abn/tests/Examples/abn-Ex.Rout.save | 82 +++++++-------------- abn-2.7-3/abn/tests/testthat.Rout.save | 6 - 19 files changed, 179 insertions(+), 163 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-21 0.2
2021-01-18 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-09-11 1.1.1
2019-09-07 1.1.0
Title: Analyze Experimental High-Throughput (Omics) Data
Description: The efficient treatment and convenient analysis of experimental high-throughput (omics) data gets facilitated through this collection of diverse functions.
Several functions address advanced object-conversions, like manipulating lists of lists or lists of arrays, reorganizing lists to arrays or into separate vectors, merging of multiple entries, etc.
Another set of functions provides speed-optimized calculation of standard deviation (sd), coefficient of variance (CV) or standard error of the mean (SEM)
for data in matrixes or means per line with respect to additional grouping (eg n groups of replicates).
Other functions facilitate dealing with non-redundant information, by indexing unique, adding counters to redundant or eliminating lines with respect redundancy in a given reference-column, etc.
Help is provided to identify very closely matching numeric values to generate (partial) distance matrixes for very big data in a memory efficient manner or to reduce the complexity of large dat [...truncated...]
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@gmail.com>
Diff between wrMisc versions 1.11.0 dated 2023-01-06 and 1.11.1 dated 2023-01-25
DESCRIPTION | 6 MD5 | 62 +- NAMESPACE | 1 R/asSepList.R | 108 +++ R/closeMatchMatrix.R | 30 - R/combineOverlapInfo.R | 19 R/exponNormalize.R | 36 - R/filterLiColDeList.R | 9 R/findSimilFrom2sets.R | 38 - R/makeNRedMatr.R | 12 R/mergeMatrices.R | 41 - R/packageDownloadStat.R | 3 R/partUnlist.R | 19 R/renameColumns.R | 17 R/replicateStructure.R | 4 R/searchLinesAtGivenSlope.R | 18 R/test2factLimma.R | 2 R/writeCsv.R | 10 inst/doc/wrMiscVignette1.Rmd | 2 inst/doc/wrMiscVignette1.html | 1150 +++++++++++++++++++++--------------------- man/asSepList.Rd | 19 man/combineOverlapInfo.Rd | 2 man/exponNormalize.Rd | 4 man/filterLiColDeList.Rd | 7 man/findSimilFrom2sets.Rd | 4 man/makeNRedMatr.Rd | 2 man/mergeMatrices.Rd | 3 man/mergeMatrixList.Rd | 3 man/packageDownloadStat.Rd | 5 man/partUnlist.Rd | 12 man/renameColumns.Rd | 6 vignettes/wrMiscVignette1.Rmd | 2 32 files changed, 882 insertions(+), 774 deletions(-)
Title: Predicting Environmental Concentration and Risk
Description: A Shiny Web Application to predict and visualize concentrations of pharmaceuticals in the aqueous environment.
Jagadeesan K., Barden R. and Kasprzyk-Hordern B. (2022) <https://www.ssrn.com/abstract=4306129>.
Author: Kishore Kumar Jagadeesan [cre, aut, cph]
Maintainer: Kishore Kumar Jagadeesan <jkkishore85@gmail.com>
Diff between PERK versions 0.0.9.1 dated 2023-01-24 and 0.0.9.2 dated 2023-01-25
DESCRIPTION | 6 - MD5 | 14 ++-- NEWS.md | 8 ++ README.md | 4 - inst/doc/PERK-Walkthrough.R | 55 ++++++++++++++++ inst/doc/PERK-Walkthrough.Rmd | 108 +++++++++++++++++++++------------ inst/doc/PERK-Walkthrough.html | 134 +++++++++++++++++++++++++---------------- vignettes/PERK-Walkthrough.Rmd | 108 +++++++++++++++++++++------------ 8 files changed, 297 insertions(+), 140 deletions(-)
Title: Excursion Sets and Contour Credibility Regions for Random Fields
Description: Functions that compute probabilistic excursion sets, contour credibility regions, contour avoiding regions, and simultaneous confidence bands for latent Gaussian random processes and fields. The package also contains functions that calculate these quantities for models estimated with the INLA package. The main references for excursions are Bolin and Lindgren (2015) <doi:10.1111/rssb.12055>, Bolin and Lindgren (2017) <doi:10.1080/10618600.2016.1228537>, and Bolin and Lindgren (2018) <doi:10.18637/jss.v086.i05>. These can be generated by the citation function in R.
Author: David Bolin [cre, aut],
Finn Lindgren [aut]
Maintainer: David Bolin <davidbolin@gmail.com>
Diff between excursions versions 2.5.4 dated 2022-10-14 and 2.5.5 dated 2023-01-25
excursions-2.5.4/excursions/R/geometry_obsolete.R |only excursions-2.5.5/excursions/DESCRIPTION | 10 excursions-2.5.5/excursions/MD5 | 27 excursions-2.5.5/excursions/NEWS.md | 5 excursions-2.5.5/excursions/R/contourmap.inla.R | 317 ++- excursions-2.5.5/excursions/R/excursions.inla.R | 264 +-- excursions-2.5.5/excursions/R/geometry.R | 9 excursions-2.5.5/excursions/R/inlautils.R | 92 - excursions-2.5.5/excursions/configure | 808 +++++++++- excursions-2.5.5/excursions/configure.ac | 29 excursions-2.5.5/excursions/man/contourmap.inla.Rd | 135 + excursions-2.5.5/excursions/man/excursions.inla.Rd | 127 - excursions-2.5.5/excursions/tests/testthat/helper-data.R | 5 excursions-2.5.5/excursions/tests/testthat/test-contourmap_inla.R | 115 + excursions-2.5.5/excursions/tests/testthat/test-excursions_inla.R | 63 15 files changed, 1510 insertions(+), 496 deletions(-)
Title: Multivariate Dependence with Copulas
Description: Classes (S4) of commonly used elliptical, Archimedean,
extreme-value and other copula families, as well as their rotations,
mixtures and asymmetrizations. Nested Archimedean copulas, related
tools and special functions. Methods for density, distribution, random
number generation, bivariate dependence measures, Rosenblatt transform,
Kendall distribution function, perspective and contour plots. Fitting of
copula models with potentially partly fixed parameters, including
standard errors. Serial independence tests, copula specification tests
(independence, exchangeability, radial symmetry, extreme-value
dependence, goodness-of-fit) and model selection based on
cross-validation. Empirical copula, smoothed versions, and
non-parametric estimators of the Pickands dependence function.
Author: Marius Hofert [aut] ,
Ivan Kojadinovic [aut] ,
Martin Maechler [aut, cre] ,
Jun Yan [aut] ,
Johanna G. Neslehova [ctb] ,
<https://orcid.org/0000-0001-9634-4796>),
Rebecca Morger [ctb] : code for free mixCopula weight
parameters)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between copula versions 1.1-1 dated 2022-11-17 and 1.1-2 dated 2023-01-25
DESCRIPTION | 10 +-- MD5 | 64 +++++++++++----------- R/cop_objects.R | 2 build/partial.rdb |binary inst/NEWS.Rd | 13 ++++ inst/doc/AC_Liouville.html | 10 +-- inst/doc/AR_Clayton.html | 6 +- inst/doc/Frank-Rmpfr.pdf |binary inst/doc/GIG.html | 24 ++++---- inst/doc/HAXC.html | 28 +++++----- inst/doc/NALC.html | 20 +++---- inst/doc/copula_GARCH.html | 10 +-- inst/doc/dNAC.html | 8 +- inst/doc/empiricial_copulas.html | 8 +- inst/doc/logL_visualization.html | 109 +++++++++++++++++++-------------------- inst/doc/nacopula-pkg.R | 14 +---- inst/doc/nacopula-pkg.Rnw | 12 ---- inst/doc/nacopula-pkg.pdf |binary inst/doc/qrng.html | 16 ++--- inst/doc/rhoAMH-dilog.R | 14 +---- inst/doc/rhoAMH-dilog.Rnw | 15 +---- inst/doc/rhoAMH-dilog.pdf |binary inst/doc/wild_animals.html | 70 ++++++++++++------------- src/ecIndepTest.c | 4 - src/evtest.c | 4 - src/indepTest_utils.c | 2 src/multIndepTest.c | 4 - src/multSerialIndepTest.c | 4 - src/rF01Joe.c | 7 +- src/serialIndepTest.c | 4 - src/set_utils.c | 6 +- vignettes/nacopula-pkg.Rnw | 12 ---- vignettes/rhoAMH-dilog.Rnw | 15 +---- 33 files changed, 240 insertions(+), 275 deletions(-)
Title: Composite Indicators Functions
Description: A collection of functions to calculate Composite Indicators methods, focusing, in particular, on the normalisation and weighting-aggregation steps, as described in OECD Handbook on constructing composite indicators: methodology and user guide <https://www.oecd.org/els/soc/handbookonconstructingcompositeindicatorsmethodologyanduserguide.htm>, 'Vidoli' and 'Fusco' and 'Mazziotta' <doi:10.1007/s11205-014-0710-y>, 'Mazziotta' and 'Pareto' (2016) <doi:10.1007/s11205-015-0998-2>, 'Van Puyenbroeck and 'Rogge' <doi:10.1016/j.ejor.2016.07.038> and other authors.
Author: Francesco Vidoli, Elisa Fusco
Maintainer: Francesco Vidoli <fvidoli@gmail.com>
Diff between Compind versions 2.7 dated 2023-01-22 and 2.7.1 dated 2023-01-25
DESCRIPTION | 8 ++-- MD5 | 10 ++--- NEWS | 6 +++ R/ci_mpi.R | 4 -- inst/doc/Compind_vignette.pdf |binary man/ci_mpi.Rd | 79 +++++++++++++++++++++--------------------- 6 files changed, 57 insertions(+), 50 deletions(-)
Title: 'Rcpp' Bindings for the 'Corpus Workbench' ('CWB')
Description: 'Rcpp' Bindings for the C code of the 'Corpus Workbench' ('CWB'), an indexing and query
engine to efficiently analyze large corpora (<https://cwb.sourceforge.io>). 'RcppCWB' is licensed
under the GNU GPL-3, in line with the GPL-3 license of the 'CWB' (<https://www.r-project.org/Licenses/GPL-3>).
The 'CWB' relies on 'pcre' (BSD license, see <http://www.pcre.org/licence.txt>)
and 'GLib' (LGPL license, see <https://www.gnu.org/licenses/lgpl-3.0.en.html>).
See the file LICENSE.note for further information. The package includes modified code of the
'rcqp' package (GPL-2, see <https://cran.r-project.org/package=rcqp>). The original work of the authors
of the 'rcqp' package is acknowledged with great respect, and they are listed as authors of this
package. To achieve cross-platform portability (including Windows), using 'Rcpp' for wrapper code
is the approach used by 'RcppCWB'.
Author: Andreas Blaette [aut, cre],
Bernard Desgraupes [aut],
Sylvain Loiseau [aut],
Oliver Christ [ctb],
Bruno Maximilian Schulze [ctb],
Stefanie Evert [ctb],
Arne Fitschen [ctb],
Jeroen Ooms [ctb],
Marius Bertram [ctb],
Tomas Kalibera [ctb]
Maintainer: Andreas Blaette <andreas.blaette@uni-due.de>
Diff between RcppCWB versions 0.5.4 dated 2022-08-30 and 0.5.5 dated 2023-01-25
DESCRIPTION | 16 ++++----- MD5 | 31 +++++++++-------- NAMESPACE | 1 NEWS.md | 10 +++++ R/RcppExports.R | 4 ++ R/cl.R | 20 ++++++++++- README.md | 22 +++++------- inst/include/RcppCWB_RcppExports.h | 21 +++++++++++ man/p_attr_default.Rd |only man/registry_info.Rd | 6 ++- src/Makevars.ucrt | 4 +- src/RcppExports.cpp | 36 ++++++++++++++++++++ src/cl.cpp | 64 ++++++++++++++++++++++++------------ src/cqp.cpp | 2 - src/cwb/cl/cl.h | 1 src/cwb/cl/globals.c | 10 +++++ tests/testthat/test_registry_info.R | 14 +++++++ 17 files changed, 199 insertions(+), 63 deletions(-)
Title: Data Sets Useful for Modeling Examples
Description: Data sets used for demonstrating or testing model-related
packages are contained in this package.
Author: Max Kuhn [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
Diff between modeldata versions 1.0.1 dated 2022-09-06 and 1.1.0 dated 2023-01-25
DESCRIPTION | 18 +- MD5 | 16 - NAMESPACE | 2 NEWS.md | 10 + R/modeldata-package.R | 5 R/simulations.R | 341 +++++++++++++++++++++++++++++++------- README.md | 33 +-- man/sim_classification.Rd | 178 ++++++++++++++++--- tests/testthat/test-simulations.R | 49 +++++ 9 files changed, 533 insertions(+), 119 deletions(-)
Title: Fit Repeated Linear Regressions
Description: When fitting a set of linear regressions which have some same variables, we can separate the matrix and reduce the computation cost. This package aims to fit a set of repeated linear regressions faster. More details can be found in this blog Lijun Wang (2017) <https://stats.hohoweiya.xyz/regression/2017/09/26/An-R-Package-Fit-Repeated-Linear-Regressions/>.
Author: Lijun Wang [aut, cre, cph]
Maintainer: Lijun Wang <szcfweiya@gmail.com>
Diff between fRLR versions 1.2.1 dated 2021-07-29 and 1.2.2 dated 2023-01-25
DESCRIPTION | 12 MD5 | 12 build/vignette.rds |binary configure | 196 --------------- configure.ac | 1 inst/doc/fRLR.R | 12 inst/doc/fRLR.html | 666 +++++++++++++++++++++++++++++------------------------ 7 files changed, 394 insertions(+), 505 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-01-10 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-01-15 0.2.1
Title: Transfer of Hydrograph from Gauged to Ungauged Catchments
Description: A geomorphology-based hydrological modelling for transferring
streamflow measurements from gauged to ungauged catchments. Inverse
modelling enables to estimate net rainfall from streamflow measurements
following Boudhraâ et al. (2018) <doi:10.1080/02626667.2018.1425801>.
Resulting net rainfall is then estimated on the ungauged catchments
by spatial interpolation in order to finally simulate streamflow
following de Lavenne et al. (2016) <doi:10.1002/2016WR018716>.
Author: Alban de Lavenne [aut, cre] ,
Christophe Cudennec [ths] ,
Tom Loree [ctb],
Herve Squividant [ctb]
Maintainer: Alban de Lavenne <alban.delavenne@inrae.fr>
Diff between transfR versions 1.0.6 dated 2023-01-22 and 1.0.7 dated 2023-01-25
DESCRIPTION | 8 MD5 | 16 - build/partial.rdb |binary inst/doc/V01_get_started.html | 6 inst/doc/V02_inputs_preparation_stars.html | 10 inst/doc/V03_inputs_preparation_whitebox.R | 228 +++++++++++++++--- inst/doc/V03_inputs_preparation_whitebox.Rmd | 90 ++++--- inst/doc/V03_inputs_preparation_whitebox.html | 313 +++++++++++++------------- vignettes/V03_inputs_preparation_whitebox.Rmd | 90 ++++--- 9 files changed, 476 insertions(+), 285 deletions(-)
Title: Power Calculations for SNP Studies with Censored Outcomes
Description: Conduct asymptotic and empirical power and sample size calculations for Single-Nucleotide Polymorphism (SNP) association studies with right censored time to event outcomes.
Author: Kouros Owzar, Zhiguo Li, Nancy Cox, Sin-Ho Jung and Chanhee Yi
Maintainer: Alexander Sibley <dcibioinformatics@duke.edu>
Diff between survSNP versions 0.25 dated 2021-10-13 and 0.26 dated 2023-01-25
DESCRIPTION | 8 MD5 | 28 NEWS | 5 build/vignette.rds |binary configure | 1576 ++++++++++-------------------------------- configure.ac | 19 inst/doc/survSNP.pdf |binary man/asypow.Rd | 2 man/censbnd.Rd | 2 man/hwe.Rd | 2 man/sim.snp.expsurv.power.Rd | 2 man/sim.snp.expsurv.sctest.Rd | 2 man/surv.exp.gt.model.Rd | 2 man/survSNP-package.Rd | 6 man/survSNP.power.table.Rd | 2 15 files changed, 427 insertions(+), 1229 deletions(-)
Title: Convert Statistical Objects into Tidy Tibbles
Description: Summarizes key information about statistical
objects in tidy tibbles. This makes it easy to report results, create
plots and consistently work with large numbers of models at once.
Broom provides three verbs that each provide different types of
information about a model. tidy() summarizes information about model
components such as coefficients of a regression. glance() reports
information about an entire model, such as goodness of fit measures
like AIC and BIC. augment() adds information about individual
observations to a dataset, such as fitted values or influence
measures.
Author: David Robinson [aut],
Alex Hayes [aut] ,
Simon Couch [aut, cre] ,
RStudio [cph, fnd],
Indrajeet Patil [ctb] ,
Derek Chiu [ctb],
Matthieu Gomez [ctb],
Boris Demeshev [ctb],
Dieter Menne [ctb],
Benjamin Nutter [ctb],
Luke Johnston [ctb],
Ben Bolker [ct [...truncated...]
Maintainer: Simon Couch <simonpatrickcouch@gmail.com>
Diff between broom versions 1.0.2 dated 2022-12-15 and 1.0.3 dated 2023-01-25
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NEWS.md | 5 +++++ R/btergm-tidiers.R | 2 +- R/nnet-tidiers.R | 2 +- inst/doc/adding-tidiers.html | 4 ++-- inst/doc/available-methods.html | 4 ++-- inst/doc/bootstrapping.html | 4 ++-- inst/doc/broom.html | 4 ++-- inst/doc/broom_and_dplyr.html | 4 ++-- man/tidy.btergm.Rd | 2 +- tests/testthat/test-epiR.R | 2 +- tests/testthat/test-stats-lm.R | 20 +++++++++++--------- 13 files changed, 45 insertions(+), 38 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-08 0.1.6
2016-12-29 0.1.5
2016-03-02 0.1.4
2016-03-01 0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-28 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-24 0.2.6
2022-11-14 0.2.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-23 0.1.7
2021-05-26 0.1.5
2021-03-03 0.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-30 0.2.0
2018-11-14 0.1.3
2017-10-21 0.1.2
2017-05-02 0.1.1
2017-03-22 0.1.0