Sun, 29 Jan 2023

Package readabs updated to version 0.4.13 with previous version 0.4.12 dated 2022-04-15

Title: Download and Tidy Time Series Data from the Australian Bureau of Statistics
Description: Downloads, imports, and tidies time series data from the Australian Bureau of Statistics <https://www.abs.gov.au/>.
Author: Matt Cowgill [aut, cre] , Zoe Meers [aut], Jaron Lee [aut], David Diviny [aut], Hugh Parsonage [ctb]
Maintainer: Matt Cowgill <mattcowgill@gmail.com>

Diff between readabs versions 0.4.12 dated 2022-04-15 and 0.4.13 dated 2023-01-29

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Package GVARX updated to version 1.4 with previous version 1.3 dated 2020-02-17

Title: Perform Global Vector Autoregression Estimation and Inference
Description: Light procedures for learning Global Vector Autoregression model (GVAR) of Pesaran, Schuermann and Weiner (2004) <DOI:10.1198/073500104000000019> and Dees, di Mauro, Pesaran and Smith (2007) <DOI:10.1002/jae.932>.
Author: Ho Tsung-wu
Maintainer: Ho Tsung-wu <tsungwu@ntnu.edu.tw>

Diff between GVARX versions 1.3 dated 2020-02-17 and 1.4 dated 2023-01-29

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Package protolite updated to version 2.2.0 with previous version 2.1.3 dated 2022-10-25

Title: Highly Optimized Protocol Buffer Serializers
Description: Pure C++ implementations for reading and writing several common data formats based on Google protocol-buffers. Currently supports 'rexp.proto' for serialized R objects, 'geobuf.proto' for binary geojson, and 'mvt.proto' for vector tiles. This package uses the auto-generated C++ code by protobuf-compiler, hence the entire serialization is optimized at compile time. The 'RProtoBuf' package on the other hand uses the protobuf runtime library to provide a general- purpose toolkit for reading and writing arbitrary protocol-buffer data in R.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

Diff between protolite versions 2.1.3 dated 2022-10-25 and 2.2.0 dated 2023-01-29

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Package ggpath updated to version 1.0.1 with previous version 1.0.0 dated 2022-09-06

Title: Robust Image Rendering Support for 'ggplot2'
Description: A 'ggplot2' extension that enables robust image grobs in panels and theme elements.
Author: Sebastian Carl [aut, cre, cph]
Maintainer: Sebastian Carl <mrcaseb@gmail.com>

Diff between ggpath versions 1.0.0 dated 2022-09-06 and 1.0.1 dated 2023-01-29

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Package forcats updated to version 1.0.0 with previous version 0.5.2 dated 2022-08-19

Title: Tools for Working with Categorical Variables (Factors)
Description: Helpers for reordering factor levels (including moving specified levels to front, ordering by first appearance, reversing, and randomly shuffling), and tools for modifying factor levels (including collapsing rare levels into other, 'anonymising', and manually 'recoding').
Author: Hadley Wickham [aut, cre], RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>

Diff between forcats versions 0.5.2 dated 2022-08-19 and 1.0.0 dated 2023-01-29

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Package flextable updated to version 0.8.5 with previous version 0.8.4 dated 2023-01-20

Title: Functions for Tabular Reporting
Description: Create pretty tables for 'HTML', 'PDF', 'Microsoft Word', 'Microsoft PowerPoint' documents from 'R Markdown' and as 'Grid Graphics' objects. Functions are provided to let users create tables, modify and format their content. It also extends package 'officer' that does not contain any feature for customized tabular reporting.
Author: David Gohel [aut, cre], ArData [cph], Clementine Jager [ctb], Panagiotis Skintzos [aut], Quentin Fazilleau [ctb], Maxim Nazarov [ctb] , Titouan Robert [ctb], Michael Barrowman [ctb] , Atsushi Yasumoto [ctb] , Paul Julian [ctb] , Sean Browning [ctb] , [...truncated...]
Maintainer: David Gohel <david.gohel@ardata.fr>

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 182 files changed, 187 insertions(+), 944 deletions(-)

More information about flextable at CRAN
Permanent link

Package dplyr updated to version 1.1.0 with previous version 1.0.10 dated 2022-09-01

Title: A Grammar of Data Manipulation
Description: A fast, consistent tool for working with data frame like objects, both in memory and out of memory.
Author: Hadley Wickham [aut, cre] , Romain Francois [aut] , Lionel Henry [aut], Kirill Mueller [aut] , Davis Vaughan [aut] , Posit, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>

Diff between dplyr versions 1.0.10 dated 2022-09-01 and 1.1.0 dated 2023-01-29

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Package cld3 updated to version 1.5.0 with previous version 1.4.4 dated 2022-10-22

Title: Google's Compact Language Detector 3
Description: Google's Compact Language Detector 3 is a neural network model for language identification and the successor of 'cld2' (available from CRAN). The algorithm is still experimental and takes a novel approach to language detection with different properties and outcomes. It can be useful to combine this with the Bayesian classifier results from 'cld2'. See <https://github.com/google/cld3#readme> for more information.
Author: Jeroen Ooms [aut, cre] , Google Inc [cph]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

Diff between cld3 versions 1.4.4 dated 2022-10-22 and 1.5.0 dated 2023-01-29

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Package brif updated to version 1.4.1 with previous version 1.4.0 dated 2023-01-13

Title: A Tree and Forest Tool for Classification and Regression
Description: Build decision trees and random forests for classification and regression. The implementation strikes a balance between minimizing computing efforts and maximizing the expected predictive accuracy, thus scales well to large data sets. Multi-threading is available through 'OpenMP' <https://gcc.gnu.org/wiki/openmp>.
Author: Yanchao Liu [aut, cre]
Maintainer: Yanchao Liu <yanchaoliu@wayne.edu>

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Package RcppTOML updated to version 0.2.2 with previous version 0.2.1 dated 2023-01-25

Title: 'Rcpp' Bindings to Parser for "Tom's Obvious Markup Language"
Description: The configuration format defined by 'TOML' (which expands to "Tom's Obvious Markup Language") specifies an excellent format (described at <https://toml.io/en/>) suitable for both human editing as well as the common uses of a machine-readable format. This package uses 'Rcpp' to connect to the 'toml++' parser written by Mark Gillard to R.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>

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Package fastverse updated to version 0.3.1 with previous version 0.3.0 dated 2022-11-15

Title: A Suite of High-Performance Packages for Statistics and Data Manipulation
Description: Easy installation, loading and management, of high-performance packages for statistical computing and data manipulation in R. The core 'fastverse' consists of 4 packages: 'data.table', 'collapse', 'kit' and 'magrittr', that jointly only depend on 'Rcpp'. The 'fastverse' can be freely and permanently extended with additional packages, both globally or for individual projects. Separate package verses can also be created. Fast packages for many common tasks such as time series, dates and times, strings, spatial data, statistics, data serialization, larger-than-memory processing, and compilation of R code are listed in the README file: <https://github.com/fastverse/fastverse#suggested-extensions>.
Author: Sebastian Krantz [aut, cre], Hadley Wickham [ctb]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>

Diff between fastverse versions 0.3.0 dated 2022-11-15 and 0.3.1 dated 2023-01-29

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Package extrafrail updated to version 1.3 with previous version 1.2 dated 2022-09-26

Title: Estimation and Additional Tools for Alternative Shared Frailty Models
Description: Provide estimation and data generation tools for some new multivariate frailty models. This version includes the gamma, inverse Gaussian, weighted Lindley and Birnbaum-Saunders as the distribution for the frailty terms. For the basal model, it is considered a parametric approach based on the Weibull distribution and a semiparametric approach. For details, see Gallardo and Bourguignon (2022) <arXiv:2206.12973>.
Author: Diego Gallardo [aut, cre], Marcelo Bourguignon [aut]
Maintainer: Diego Gallardo <diego.gallardo@uda.cl>

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Package EnrichIntersect updated to version 0.5 with previous version 0.4 dated 2022-09-23

Title: Enrichment Analysis and Intersecting Sankey Diagram
Description: A flexible tool for enrichment analysis based on user-defined sets. It allows users to perform over-representation analysis of the custom sets among any specified ranked feature list, hence making enrichment analysis applicable to various types of data from different scientific fields. 'EnrichIntersect' also enables an interactive means to visualize identified associations based on, for example, the mix-lasso model (Zhao et al., iScience, 2022 <doi:10.1016/j.isci.2022.104767>) or similar methods.
Author: Zhi Zhao [aut, cre], Manuela Zucknick [aut], Tero Aittokallio [ctb]
Maintainer: Zhi Zhao <zhi.zhao@medisin.uio.no>

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Package alone updated to version 0.1.1 with previous version 0.1.0 dated 2023-01-20

Title: Datasets from the Survival TV Series Alone
Description: A collection of datasets on the Alone survival TV series in tidy format. Included in the package are 4 datasets detailing the survivors, their loadouts, episode details and season information.
Author: Daniel Oehm [aut, cre]
Maintainer: Daniel Oehm <danieloehm@gmail.com>

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Package parseRPDR updated to version 0.2.4 with previous version 0.2.3 dated 2022-06-07

Title: Parse and Manipulate Research Patient Data Registry ('RPDR') Text Queries
Description: Functions to load Research Patient Data Registry ('RPDR') text queries from Partners Healthcare institutions into R. The package also provides helper functions to manipulate data and execute common procedures such as finding the closest radiological exams considering a given timepoint, or creating a DICOM header database from the downloaded images. 'parseRPDR' currently supports txt sources: "mrn", "con", "dem", "enc", "rdt", "lab", "med", "dia", "rfv", "prc", "phy", "lno", "car", "dis", "end", "hnp", "opn", "pat", "prg", "pul", "rad" and "vis". All functionalities are parallelized for fast and efficient analyses.
Author: Marton Kolossvary [aut, cre]
Maintainer: Marton Kolossvary <mkolossvary@mgh.harvard.edu>

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Package mmap updated to version 0.6-21 with previous version 0.6-19 dated 2020-01-14

Title: Map Pages of Memory
Description: R interface to POSIX mmap and Window's MapViewOfFile.
Author: Jeffrey A. Ryan
Maintainer: Jeffrey A. Ryan <jeff.a.ryan@gmail.com>

Diff between mmap versions 0.6-19 dated 2020-01-14 and 0.6-21 dated 2023-01-29

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Package simplevis updated to version 7.0.0 with previous version 6.4.0 dated 2022-08-05

Title: Wrappers to Simplify 'leaflet' Visualisation
Description: Wrapper functions around the amazing 'leaflet' package that aims to simplify 'leaflet' visualisation. See the 'ggblanket' package for 'ggplot2' wrappers.
Author: David Hodge [aut, cre] , Kate Lee [ctb] , Xavier Miles [ctb] , Statistics New Zealand [cph]
Maintainer: David Hodge <davidhodge931@gmail.com>

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Package vcdExtra updated to version 0.8-2 with previous version 0.8-0 dated 2022-04-21

Title: 'vcd' Extensions and Additions
Description: Provides additional data sets, methods and documentation to complement the 'vcd' package for Visualizing Categorical Data and the 'gnm' package for Generalized Nonlinear Models. In particular, 'vcdExtra' extends mosaic, assoc and sieve plots from 'vcd' to handle 'glm()' and 'gnm()' models and adds a 3D version in 'mosaic3d'. Additionally, methods are provided for comparing and visualizing lists of 'glm' and 'loglm' objects. This package is now a support package for the book, "Discrete Data Analysis with R" by Michael Friendly and David Meyer.
Author: Michael Friendly [aut, cre] , Heather Turner [ctb], David Meyer [ctb], Achim Zeileis [ctb], Duncan Murdoch [ctb], David Firth [ctb], Matt Kumar [ctb], Shuguang Sun [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>

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Package dracor updated to version 0.2.6 with previous version 0.2.5 dated 2023-01-19

Title: Decode Draco Format 3D Mesh Data
Description: Decodes meshes and point cloud data encoded by the Draco mesh compression library from Google. Note that this is only designed for basic decoding and not intended as a full scale wrapping of the Draco library.
Author: Gregory Jefferis [aut, cre] , Google Inc [aut, cph]
Maintainer: Gregory Jefferis <jefferis@gmail.com>

Diff between dracor versions 0.2.5 dated 2023-01-19 and 0.2.6 dated 2023-01-29

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Package uavRmp updated to version 0.6.2 with previous version 0.6.0 dated 2022-05-31

Title: UAV Mission Planner
Description: The Unmanned Aerial Vehicle Mission Planner provides an easy to use work flow for planning autonomous obstacle avoiding surveys of (almost) ready to fly unmanned aerial vehicles to retrieve aerial or spot related data. It creates either intermediate flight control files for the DJI-Litchi supported series or ready to upload control files for the pixhawk-based flight controller as used in the 3DR-Solo. Additionally it contains some useful tools for digitizing and data manipulation.
Author: Chris Reudenbach [cre, aut], Marvin Ludwig [ctb], Sebastian Richter [ctb], Florian Detsch [ctb], Hanna Meyer [ctb]
Maintainer: Chris Reudenbach <reudenbach@uni-marburg.de>

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Permanent link

Package scrypt updated to version 0.1.6 with previous version 0.1.5 dated 2023-01-17

Title: Key Derivation Functions for R Based on Scrypt
Description: Functions for working with the scrypt key derivation functions originally described by Colin Percival <https://www.tarsnap.com/scrypt/scrypt.pdf> and in Percival and Josefsson (2016) <doi:10.17487/RFC7914>. Scrypt is a password-based key derivation function created by Colin Percival. The algorithm was specifically designed to make it costly to perform large-scale custom hardware attacks by requiring large amounts of memory.
Author: Bob Jansen [ctb, cre], Andy Kipp [aut], Colin Percival [aut, cph], RStudio [cph]
Maintainer: Bob Jansen <bobjansen@gmail.com>

Diff between scrypt versions 0.1.5 dated 2023-01-17 and 0.1.6 dated 2023-01-29

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More information about scrypt at CRAN
Permanent link

Package openxlsx2 updated to version 0.5 with previous version 0.4.1 dated 2022-12-18

Title: Read, Write and Edit 'xlsx' Files
Description: Simplifies the creation of 'xlsx' files by providing a high level interface to writing, styling and editing worksheets.
Author: Jordan Mark Barbone [aut] , Jan Marvin Garbuszus [aut, cre], openxlsx authors [cph] , Arseny Kapoulkine [ctb, cph]
Maintainer: Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>

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 openxlsx2-0.5/openxlsx2/NEWS.md                                       |   47 
 openxlsx2-0.5/openxlsx2/R/RcppExports.R                               |   20 
 openxlsx2-0.5/openxlsx2/R/asserts.R                                   |   18 
 openxlsx2-0.5/openxlsx2/R/baseXML.R                                   |    6 
 openxlsx2-0.5/openxlsx2/R/class-chart-sheet.R                         |   12 
 openxlsx2-0.5/openxlsx2/R/class-color.R                               |   34 
 openxlsx2-0.5/openxlsx2/R/class-comment.R                             |    6 
 openxlsx2-0.5/openxlsx2/R/class-style_mgr.R                           |    4 
 openxlsx2-0.5/openxlsx2/R/class-workbook-utils.R                      |    2 
 openxlsx2-0.5/openxlsx2/R/class-workbook-wrappers.R                   |  285 +++-
 openxlsx2-0.5/openxlsx2/R/class-workbook.R                            |  679 +++++++---
 openxlsx2-0.5/openxlsx2/R/class-worksheet.R                           |   12 
 openxlsx2-0.5/openxlsx2/R/conditional_formatting.R                    |  163 ++
 openxlsx2-0.5/openxlsx2/R/helperFunctions.R                           |  606 ++++++++
 openxlsx2-0.5/openxlsx2/R/openxlsx2.R                                 |   11 
 openxlsx2-0.5/openxlsx2/R/wb_functions.R                              |    3 
 openxlsx2-0.5/openxlsx2/R/wb_load.R                                   |   97 -
 openxlsx2-0.5/openxlsx2/R/wb_styles.R                                 |   40 
 openxlsx2-0.5/openxlsx2/R/write.R                                     |  197 +-
 openxlsx2-0.5/openxlsx2/R/write_xlsx.R                                |   22 
 openxlsx2-0.5/openxlsx2/README.md                                     |    2 
 openxlsx2-0.5/openxlsx2/inst/WORDLIST                                 |   17 
 openxlsx2-0.5/openxlsx2/inst/doc/Update-from-openxlsx.R               |    4 
 openxlsx2-0.5/openxlsx2/inst/doc/Update-from-openxlsx.Rmd             |    6 
 openxlsx2-0.5/openxlsx2/inst/doc/Update-from-openxlsx.html            |  118 -
 openxlsx2-0.5/openxlsx2/inst/doc/conditional-formatting.R             |   10 
 openxlsx2-0.5/openxlsx2/inst/doc/conditional-formatting.Rmd           |   10 
 openxlsx2-0.5/openxlsx2/inst/doc/conditional-formatting.html          |  552 ++++----
 openxlsx2-0.5/openxlsx2/inst/doc/openxlsx2_basic_manual.html          |  332 ++--
 openxlsx2-0.5/openxlsx2/inst/doc/openxlsx2_charts_manual.html         |  226 +--
 openxlsx2-0.5/openxlsx2/inst/doc/openxlsx2_style_manual.R             |   16 
 openxlsx2-0.5/openxlsx2/inst/doc/openxlsx2_style_manual.Rmd           |   18 
 openxlsx2-0.5/openxlsx2/inst/doc/openxlsx2_style_manual.html          |  550 ++++----
 openxlsx2-0.5/openxlsx2/man/comment.Rd                                |    4 
 openxlsx2-0.5/openxlsx2/man/create_border.Rd                          |    5 
 openxlsx2-0.5/openxlsx2/man/create_dxfs_style.Rd                      |   19 
 openxlsx2-0.5/openxlsx2/man/create_fill.Rd                            |    5 
 openxlsx2-0.5/openxlsx2/man/create_font.Rd                            |    7 
 openxlsx2-0.5/openxlsx2/man/create_sparklines.Rd                      |   16 
 openxlsx2-0.5/openxlsx2/man/openxlsx2.Rd                              |    3 
 openxlsx2-0.5/openxlsx2/man/style_mgr.Rd                              |    4 
 openxlsx2-0.5/openxlsx2/man/wbChartSheet.Rd                           |    4 
 openxlsx2-0.5/openxlsx2/man/wbColour.Rd                               |    9 
 openxlsx2-0.5/openxlsx2/man/wbWorkbook.Rd                             |  179 ++
 openxlsx2-0.5/openxlsx2/man/wbWorksheet.Rd                            |    4 
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 openxlsx2-0.5/openxlsx2/man/wb_add_chart_xml.Rd                       |    6 
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 openxlsx2-0.5/openxlsx2/man/wb_add_conditional_formatting.Rd          |   19 
 openxlsx2-0.5/openxlsx2/man/wb_add_data_table.Rd                      |   11 
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 openxlsx2-0.5/openxlsx2/man/wb_add_pivot_table.Rd                     |only
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 openxlsx2-0.5/openxlsx2/man/wb_add_worksheet.Rd                       |   17 
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 openxlsx2-0.5/openxlsx2/man/wb_freeze_pane.Rd                         |    2 
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 openxlsx2-0.5/openxlsx2/man/wb_set_col_widths.Rd                      |    2 
 openxlsx2-0.5/openxlsx2/man/wb_set_last_modified_by.Rd                |    2 
 openxlsx2-0.5/openxlsx2/man/wb_set_row_heights.Rd                     |    2 
 openxlsx2-0.5/openxlsx2/man/wb_workbook.Rd                            |    2 
 openxlsx2-0.5/openxlsx2/man/workbook_grouping.Rd                      |   24 
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 openxlsx2-0.5/openxlsx2/man/ws_cell_merge.Rd                          |    2 
 openxlsx2-0.5/openxlsx2/src/RcppExports.cpp                           |   63 
 openxlsx2-0.5/openxlsx2/src/helper_functions.cpp                      |  161 +-
 openxlsx2-0.5/openxlsx2/src/openxlsx2.h                               |    1 
 openxlsx2-0.5/openxlsx2/src/openxlsx2_types.h                         |    3 
 openxlsx2-0.5/openxlsx2/src/strings_xml.cpp                           |   84 -
 openxlsx2-0.5/openxlsx2/tests/testthat/test-base_font.R               |    4 
 openxlsx2-0.5/openxlsx2/tests/testthat/test-class-color.R             |   43 
 openxlsx2-0.5/openxlsx2/tests/testthat/test-class-comment.R           |    2 
 openxlsx2-0.5/openxlsx2/tests/testthat/test-class-workbook-wrappers.R |   12 
 openxlsx2-0.5/openxlsx2/tests/testthat/test-cloneWorksheet.R          |   45 
 openxlsx2-0.5/openxlsx2/tests/testthat/test-conditional_formatting.R  |   86 +
 openxlsx2-0.5/openxlsx2/tests/testthat/test-loading_workbook.R        |   14 
 openxlsx2-0.5/openxlsx2/tests/testthat/test-outlines.R                |only
 openxlsx2-0.5/openxlsx2/tests/testthat/test-read_from_created_wb.R    |    8 
 openxlsx2-0.5/openxlsx2/tests/testthat/test-read_sources.R            |   59 
 openxlsx2-0.5/openxlsx2/tests/testthat/test-strings_xml.R             |    2 
 openxlsx2-0.5/openxlsx2/tests/testthat/test-write.R                   |  184 ++
 openxlsx2-0.5/openxlsx2/vignettes/Update-from-openxlsx.Rmd            |    6 
 openxlsx2-0.5/openxlsx2/vignettes/conditional-formatting.Rmd          |   10 
 openxlsx2-0.5/openxlsx2/vignettes/openxlsx2_style_manual.Rmd          |   18 
 98 files changed, 3858 insertions(+), 1736 deletions(-)

More information about openxlsx2 at CRAN
Permanent link

Package cheatsheet updated to version 0.1.1 with previous version 0.1.0 dated 2021-04-13

Title: Download R Cheat Sheets Locally
Description: A simple package to grab cheat sheets and save them to your local computer.
Author: Brad Lindblad [aut, cre], Posit [cph]
Maintainer: Brad Lindblad <me@bradlindblad.com>

Diff between cheatsheet versions 0.1.0 dated 2021-04-13 and 0.1.1 dated 2023-01-29

 DESCRIPTION             |   14 ++++++--------
 MD5                     |    9 +++++----
 NEWS.md                 |only
 R/get_all_cheatsheets.R |    1 +
 README.md               |   47 ++++++++++++++++++++++++-----------------------
 man/cheatsheet.Rd       |    5 +++++
 6 files changed, 41 insertions(+), 35 deletions(-)

More information about cheatsheet at CRAN
Permanent link

Package SAMtool updated to version 1.5.0 with previous version 1.4.1 dated 2022-11-16

Title: Stock Assessment Methods Toolkit
Description: Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform data-rich fisheries. 'SAMtool' provides a conditioning model, assessment models of varying complexity with standardized reporting, model-based management procedures, and diagnostic tools for evaluating assessments inside closed-loop simulation.
Author: Quang Huynh [aut, cre], Tom Carruthers [aut], Adrian Hordyk [aut]
Maintainer: Quang Huynh <quang@bluematterscience.com>

Diff between SAMtool versions 1.4.1 dated 2022-11-16 and 1.5.0 dated 2023-01-29

 DESCRIPTION                        |   16 -
 MD5                                |  117 +++++-----
 NAMESPACE                          |   10 
 NEWS.md                            |    8 
 R/HCRs.R                           |  102 ++++-----
 R/Misc_fun.R                       |  253 ++++++++++++++--------
 R/RCM2MOM.R                        |    6 
 R/RCM_assess.R                     |   40 +--
 R/RCM_data.R                       |  404 ++++++++++++++++++------------------
 R/RCM_est.R                        |  410 ++++++++++++++++++++-----------------
 R/RCM_int.R                        |  394 ++++++++++++++++++-----------------
 R/RCM_rmd.R                        |  178 ++++++++--------
 R/assess_DD.R                      |  126 +++++------
 R/assess_SCA.R                     |  282 ++++++++++++-------------
 R/assess_SP.R                      |  191 +++++++++--------
 R/assess_SSS.R                     |   59 ++---
 R/assess_VPA.R                     |  132 +++++------
 R/assess_cDD.R                     |  106 ++++-----
 R/assess_shortcut.R                |   52 ++--
 R/define_S4_class_RCModel.R        |  146 ++++++-------
 R/define_S4_class_assess_RCMdata.R |   12 -
 R/define_S4_class_profile.R        |   36 +--
 R/define_S4_class_project.R        |  143 ++++++------
 R/define_S4_class_retro.R          |   20 -
 R/define_S4_generic_RCM.R          |  177 ++++++++-------
 R/define_S4_generic_posterior.R    |   63 +++--
 R/define_S4_generic_simulate.R     |only
 R/diagnostic.R                     |  147 +++++++------
 R/interim_MP.R                     |   60 ++---
 R/report_DD_TMB.R                  |   63 ++---
 R/report_SCA.R                     |  110 +++++----
 R/report_SP.R                      |   69 ++----
 R/report_SSS.R                     |    2 
 R/report_VPA.R                     |   18 -
 R/report_auxiliary.R               |  192 ++++++++---------
 R/report_cDD.R                     |  100 ++++-----
 R/report_spict.R                   |   10 
 R/retrospective_AM.R               |  216 ++++++++++++-------
 R/rmd_report.R                     |  106 ++++-----
 R/z_MPs.R                          |   14 -
 R/zzz.R                            |    1 
 build/partial.rdb                  |binary
 inst/include/DD.hpp                |   33 ++
 inst/include/RCM.hpp               |  164 ++++++++++++--
 inst/include/SCA.hpp               |   87 +++++++
 inst/include/SP.hpp                |   41 +++
 inst/include/VPA.hpp               |    7 
 inst/include/cDD.hpp               |   38 +++
 inst/include/functions.hpp         |   29 ++
 man/RCM.Rd                         |   60 +++--
 man/SCA_CAL.Rd                     |    2 
 man/SCA_DDM.Rd                     |    2 
 man/SCA_RWM.Rd                     |    2 
 man/SP.Rd                          |   54 ++--
 man/SSS.Rd                         |    3 
 man/posterior.Rd                   |    6 
 man/profile.Rd                     |   13 -
 man/retrospective.Rd               |    2 
 man/retrospective_AM.Rd            |    6 
 man/sim-class.Rd                   |only
 man/simulate.Rd                    |only
 61 files changed, 2904 insertions(+), 2236 deletions(-)

More information about SAMtool at CRAN
Permanent link


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