Title: Vehicular Emissions Inventories
Description: Elaboration of vehicular emissions inventories,
consisting in four stages, pre-processing activity data, preparing
emissions factors, estimating the emissions and post-processing of emissions
in maps and databases. More details in Ibarra-Espinosa et al (2018) <doi:10.5194/gmd-11-2209-2018>.
Before using VEIN you need to know the vehicular composition of your study area, in other words,
the combination of of type of vehicles, size and fuel of the fleet. Then, it is recommended to
start with the project to download a template to create a structure of directories and scripts.
Author: Sergio Ibarra-Espinosa [aut, cre]
,
Joao Bazzo [ctb] ,
Mario Gavidia-Calderon [ctb]
Maintainer: Sergio Ibarra-Espinosa <zergioibarra@gmail.com>
Diff between vein versions 0.9.9 dated 2022-08-17 and 1.0.0 dated 2023-02-22
vein-0.9.9/vein/man/ef_ive.Rd |only vein-1.0.0/vein/DESCRIPTION | 15 vein-1.0.0/vein/MD5 | 72 +- vein-1.0.0/vein/NAMESPACE | 11 vein-1.0.0/vein/NEWS.md | 38 + vein-1.0.0/vein/R/ef_cetesb.R | 8 vein-1.0.0/vein/R/ef_china.R | 641 ++++++++++++++++++++- vein-1.0.0/vein/R/ef_hdv_speed.R | 1 vein-1.0.0/vein/R/ef_ive.R | 46 - vein-1.0.0/vein/R/ef_wear.R | 275 +++++++-- vein-1.0.0/vein/R/emis_chem.R | 14 vein-1.0.0/vein/R/emis_chem2.R | 39 - vein-1.0.0/vein/R/emis_grid.R | 9 vein-1.0.0/vein/R/emis_long.R |only vein-1.0.0/vein/R/get_project.R | 107 +-- vein-1.0.0/vein/R/speciate.R | 32 + vein-1.0.0/vein/R/sysdata.rda |binary vein-1.0.0/vein/R/temp_veh.R |only vein-1.0.0/vein/build/partial.rdb |binary vein-1.0.0/vein/inst/CITATION | 12 vein-1.0.0/vein/inst/doc/basics.html | 115 +-- vein-1.0.0/vein/man/ef_china.Rd | 22 vein-1.0.0/vein/man/ef_china_det.Rd |only vein-1.0.0/vein/man/ef_china_h.Rd |only vein-1.0.0/vein/man/ef_china_hu.Rd |only vein-1.0.0/vein/man/ef_china_long.Rd |only vein-1.0.0/vein/man/ef_china_s.Rd |only vein-1.0.0/vein/man/ef_china_speed.Rd |only vein-1.0.0/vein/man/ef_china_te.Rd |only vein-1.0.0/vein/man/ef_china_th.Rd |only vein-1.0.0/vein/man/ef_hdv_speed.Rd | 2 vein-1.0.0/vein/man/ef_wear.Rd | 42 + vein-1.0.0/vein/man/emis_chem.Rd | 12 vein-1.0.0/vein/man/emis_chem2.Rd | 4 vein-1.0.0/vein/man/emis_china.Rd |only vein-1.0.0/vein/man/emis_long.Rd |only vein-1.0.0/vein/man/figures/unnamed-chunk-10-1.png |binary vein-1.0.0/vein/man/figures/unnamed-chunk-3-1.png |binary vein-1.0.0/vein/man/get_project.Rd | 5 vein-1.0.0/vein/man/speciate.Rd | 32 + vein-1.0.0/vein/man/temp_veh.Rd |only vein-1.0.0/vein/man/vein-deprecated.Rd | 88 ++ vein-1.0.0/vein/man/vein-package.Rd | 3 vein-1.0.0/vein/tests/testthat/test-ef_ive.R | 44 - 44 files changed, 1389 insertions(+), 300 deletions(-)
Title: A Common API to Modeling and Analysis Functions
Description: A common interface is provided to allow users to specify a
model without having to remember the different argument names across
different functions or computational engines (e.g. 'R', 'Spark',
'Stan', 'H2O', etc).
Author: Max Kuhn [aut, cre],
Davis Vaughan [aut],
Emil Hvitfeldt [ctb],
Posit Software PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
Diff between parsnip versions 1.0.3 dated 2022-11-11 and 1.0.4 dated 2023-02-22
parsnip-1.0.3/parsnip/tests/testthat/helpers.R |only parsnip-1.0.4/parsnip/DESCRIPTION | 24 parsnip-1.0.4/parsnip/MD5 | 242 +++++----- parsnip-1.0.4/parsnip/NAMESPACE | 15 parsnip-1.0.4/parsnip/NEWS.md | 7 parsnip-1.0.4/parsnip/R/aaa_models.R | 5 parsnip-1.0.4/parsnip/R/censoring_probs.R |only parsnip-1.0.4/parsnip/R/fit.R | 8 parsnip-1.0.4/parsnip/R/fit_helpers.R | 2 parsnip-1.0.4/parsnip/R/glmnet.R |only parsnip-1.0.4/parsnip/R/linear_reg.R | 112 ---- parsnip-1.0.4/parsnip/R/logistic_reg.R | 149 +----- parsnip-1.0.4/parsnip/R/multinom_reg.R | 151 +----- parsnip-1.0.4/parsnip/R/parsnip-package.R | 2 parsnip-1.0.4/parsnip/R/poisson_reg.R | 1 parsnip-1.0.4/parsnip/R/predict.R | 115 ++-- parsnip-1.0.4/parsnip/R/tunable.R | 42 - parsnip-1.0.4/parsnip/R/tune_args.R | 6 parsnip-1.0.4/parsnip/R/zzz.R | 34 - parsnip-1.0.4/parsnip/README.md | 56 +- parsnip-1.0.4/parsnip/build/parsnip.pdf |binary parsnip-1.0.4/parsnip/build/vignette.rds |binary parsnip-1.0.4/parsnip/inst/doc/parsnip.html | 187 +++---- parsnip-1.0.4/parsnip/man/bart-internal.Rd | 6 parsnip-1.0.4/parsnip/man/details_C5_rules_C5.0.Rd | 9 parsnip-1.0.4/parsnip/man/details_auto_ml_h2o.Rd | 10 parsnip-1.0.4/parsnip/man/details_bag_mars_earth.Rd | 6 parsnip-1.0.4/parsnip/man/details_bag_mlp_nnet.Rd | 3 parsnip-1.0.4/parsnip/man/details_bag_tree_C5.0.Rd | 3 parsnip-1.0.4/parsnip/man/details_bag_tree_rpart.Rd | 3 parsnip-1.0.4/parsnip/man/details_bart_dbarts.Rd | 11 parsnip-1.0.4/parsnip/man/details_boost_tree_C5.0.Rd | 7 parsnip-1.0.4/parsnip/man/details_boost_tree_h2o.Rd | 9 parsnip-1.0.4/parsnip/man/details_boost_tree_lightgbm.Rd | 11 parsnip-1.0.4/parsnip/man/details_boost_tree_mboost.Rd | 3 parsnip-1.0.4/parsnip/man/details_boost_tree_spark.Rd | 15 parsnip-1.0.4/parsnip/man/details_boost_tree_xgboost.Rd | 20 parsnip-1.0.4/parsnip/man/details_cubist_rules_Cubist.Rd | 9 parsnip-1.0.4/parsnip/man/details_decision_tree_C5.0.Rd | 3 parsnip-1.0.4/parsnip/man/details_decision_tree_partykit.Rd | 3 parsnip-1.0.4/parsnip/man/details_decision_tree_rpart.Rd | 3 parsnip-1.0.4/parsnip/man/details_decision_tree_spark.Rd | 12 parsnip-1.0.4/parsnip/man/details_discrim_flexible_earth.Rd | 7 parsnip-1.0.4/parsnip/man/details_discrim_linear_MASS.Rd | 3 parsnip-1.0.4/parsnip/man/details_discrim_linear_sparsediscrim.Rd | 7 parsnip-1.0.4/parsnip/man/details_discrim_quad_MASS.Rd | 3 parsnip-1.0.4/parsnip/man/details_discrim_quad_sparsediscrim.Rd | 3 parsnip-1.0.4/parsnip/man/details_discrim_regularized_klaR.Rd | 11 parsnip-1.0.4/parsnip/man/details_gen_additive_mod_mgcv.Rd | 7 parsnip-1.0.4/parsnip/man/details_linear_reg_brulee.Rd | 7 parsnip-1.0.4/parsnip/man/details_linear_reg_glm.Rd | 3 parsnip-1.0.4/parsnip/man/details_linear_reg_glmer.Rd | 12 parsnip-1.0.4/parsnip/man/details_linear_reg_glmnet.Rd | 10 parsnip-1.0.4/parsnip/man/details_linear_reg_gls.Rd | 4 parsnip-1.0.4/parsnip/man/details_linear_reg_h2o.Rd | 3 parsnip-1.0.4/parsnip/man/details_linear_reg_keras.Rd | 4 parsnip-1.0.4/parsnip/man/details_linear_reg_lm.Rd | 3 parsnip-1.0.4/parsnip/man/details_linear_reg_lme.Rd | 12 parsnip-1.0.4/parsnip/man/details_linear_reg_lmer.Rd | 12 parsnip-1.0.4/parsnip/man/details_linear_reg_spark.Rd | 20 parsnip-1.0.4/parsnip/man/details_linear_reg_stan.Rd | 11 parsnip-1.0.4/parsnip/man/details_linear_reg_stan_glmer.Rd | 9 parsnip-1.0.4/parsnip/man/details_logistic_reg_LiblineaR.Rd | 10 parsnip-1.0.4/parsnip/man/details_logistic_reg_brulee.Rd | 7 parsnip-1.0.4/parsnip/man/details_logistic_reg_glm.Rd | 3 parsnip-1.0.4/parsnip/man/details_logistic_reg_glmer.Rd | 12 parsnip-1.0.4/parsnip/man/details_logistic_reg_glmnet.Rd | 14 parsnip-1.0.4/parsnip/man/details_logistic_reg_h2o.Rd | 3 parsnip-1.0.4/parsnip/man/details_logistic_reg_keras.Rd | 4 parsnip-1.0.4/parsnip/man/details_logistic_reg_spark.Rd | 20 parsnip-1.0.4/parsnip/man/details_logistic_reg_stan.Rd | 9 parsnip-1.0.4/parsnip/man/details_logistic_reg_stan_glmer.Rd | 9 parsnip-1.0.4/parsnip/man/details_mars_earth.Rd | 6 parsnip-1.0.4/parsnip/man/details_mlp_brulee.Rd | 7 parsnip-1.0.4/parsnip/man/details_mlp_h2o.Rd | 23 parsnip-1.0.4/parsnip/man/details_mlp_keras.Rd | 3 parsnip-1.0.4/parsnip/man/details_mlp_nnet.Rd | 3 parsnip-1.0.4/parsnip/man/details_multinom_reg_brulee.Rd | 7 parsnip-1.0.4/parsnip/man/details_multinom_reg_glmnet.Rd | 14 parsnip-1.0.4/parsnip/man/details_multinom_reg_h2o.Rd | 3 parsnip-1.0.4/parsnip/man/details_multinom_reg_keras.Rd | 4 parsnip-1.0.4/parsnip/man/details_multinom_reg_nnet.Rd | 7 parsnip-1.0.4/parsnip/man/details_multinom_reg_spark.Rd | 20 parsnip-1.0.4/parsnip/man/details_naive_Bayes_h2o.Rd | 8 parsnip-1.0.4/parsnip/man/details_naive_Bayes_klaR.Rd | 3 parsnip-1.0.4/parsnip/man/details_naive_Bayes_naivebayes.Rd | 3 parsnip-1.0.4/parsnip/man/details_nearest_neighbor_kknn.Rd | 7 parsnip-1.0.4/parsnip/man/details_pls_mixOmics.Rd | 7 parsnip-1.0.4/parsnip/man/details_poisson_reg_glmer.Rd | 12 parsnip-1.0.4/parsnip/man/details_poisson_reg_glmnet.Rd | 7 parsnip-1.0.4/parsnip/man/details_poisson_reg_h2o.Rd | 3 parsnip-1.0.4/parsnip/man/details_poisson_reg_stan.Rd | 8 parsnip-1.0.4/parsnip/man/details_poisson_reg_stan_glmer.Rd | 9 parsnip-1.0.4/parsnip/man/details_proportional_hazards_glmnet.Rd | 11 parsnip-1.0.4/parsnip/man/details_proportional_hazards_survival.Rd | 3 parsnip-1.0.4/parsnip/man/details_rand_forest_aorsf.Rd | 4 parsnip-1.0.4/parsnip/man/details_rand_forest_partykit.Rd | 3 parsnip-1.0.4/parsnip/man/details_rand_forest_randomForest.Rd | 3 parsnip-1.0.4/parsnip/man/details_rand_forest_ranger.Rd | 3 parsnip-1.0.4/parsnip/man/details_rand_forest_spark.Rd | 12 parsnip-1.0.4/parsnip/man/details_rule_fit_h2o.Rd | 8 parsnip-1.0.4/parsnip/man/details_rule_fit_xrf.Rd | 13 parsnip-1.0.4/parsnip/man/details_surv_reg_survival.Rd | 4 parsnip-1.0.4/parsnip/man/details_survival_reg_survival.Rd | 4 parsnip-1.0.4/parsnip/man/details_svm_linear_LiblineaR.Rd | 3 parsnip-1.0.4/parsnip/man/details_svm_linear_kernlab.Rd | 6 parsnip-1.0.4/parsnip/man/details_svm_poly_kernlab.Rd | 6 parsnip-1.0.4/parsnip/man/details_svm_rbf_kernlab.Rd | 6 parsnip-1.0.4/parsnip/man/fit.Rd | 6 parsnip-1.0.4/parsnip/man/other_predict.Rd | 29 - parsnip-1.0.4/parsnip/man/parsnip-package.Rd | 6 parsnip-1.0.4/parsnip/man/predict.model_fit.Rd | 88 +-- parsnip-1.0.4/parsnip/man/rmd/boost_tree_h2o.md | 4 parsnip-1.0.4/parsnip/man/rmd/boost_tree_lightgbm.md | 4 parsnip-1.0.4/parsnip/man/rmd/boost_tree_xgboost.md | 8 parsnip-1.0.4/parsnip/man/rmd/discrim_regularized_klaR.md | 2 parsnip-1.0.4/parsnip/man/rmd/mlp_h2o.md | 2 parsnip-1.0.4/parsnip/man/rmd/rule_fit_xrf.md | 4 parsnip-1.0.4/parsnip/man/rmd/template-mtry-prop.Rmd | 4 parsnip-1.0.4/parsnip/man/set_new_model.Rd | 8 parsnip-1.0.4/parsnip/tests/testthat/README.md |only parsnip-1.0.4/parsnip/tests/testthat/_snaps/poisson_reg.md |only parsnip-1.0.4/parsnip/tests/testthat/test-poisson_reg.R |only parsnip-1.0.4/parsnip/tests/testthat/test_extract.R | 7 parsnip-1.0.4/parsnip/vignettes/articles/Submodels.Rmd | 2 125 files changed, 820 insertions(+), 1153 deletions(-)
Title: Inference of Gene Regulatory Networks
Description: We present 'corto' (Correlation Tool), a simple package to infer
gene regulatory networks and visualize master regulators from gene expression
data using DPI (Data Processing Inequality) and bootstrapping to recover edges.
An initial step is performed to calculate all significant
edges between a list of source nodes (centroids) and target genes.
Then all triplets containing two centroids and one target are tested
in a DPI step which removes edges. A bootstrapping process then calculates
the robustness of the network, eventually re-adding edges previously removed by DPI.
The algorithm has been optimized to run outside a computing cluster, using a fast correlation
implementation. The package finally provides functions to calculate network enrichment
analysis from RNA-Seq and ATAC-Seq signatures as described in the article by
Giorgi lab (2020) <doi:10.1093/bioinformatics/btaa223>.
Author: Federico M. Giorgi [aut, cre],
Daniele Mercatelli [ctb],
Gonzalo Lopez-Garcia [ctb]
Maintainer: Federico M. Giorgi <federico.giorgi@gmail.com>
Diff between corto versions 1.1.11 dated 2022-05-23 and 1.2.0 dated 2023-02-22
corto-1.1.11/corto/README.md |only corto-1.2.0/corto/DESCRIPTION | 8 corto-1.2.0/corto/MD5 | 18 corto-1.2.0/corto/NAMESPACE | 6 corto-1.2.0/corto/R/functions.R | 115 ++++-- corto-1.2.0/corto/R/mra.R | 20 + corto-1.2.0/corto/build/vignette.rds |binary corto-1.2.0/corto/inst/CITATION | 23 - corto-1.2.0/corto/inst/doc/corto_vignette.html | 478 +++++++++++++++++++------ corto-1.2.0/corto/man/scatter.Rd | 6 corto-1.2.0/corto/man/scinot.Rd |only 11 files changed, 512 insertions(+), 162 deletions(-)
Title: R Client for the 'Civis Platform API'
Description: A convenient interface for making
requests directly to the 'Civis Platform API' <https://www.civisanalytics.com/platform/>.
Full documentation available 'here' <https://civisanalytics.github.io/civis-r/>.
Author: Peter Cooman [cre, ctb],
Patrick Miller [aut],
Keith Ingersoll [aut],
Bill Lattner [ctb],
Anh Le [ctb],
Michelangelo D'Agostino [ctb],
Sam Weiss [ctb],
Stephen Hoover [ctb],
Danning Chen [ctb],
Elizabeth Sander [ctb],
Madison Hobbs [ctb],
Anna Bladey [...truncated...]
Maintainer: Peter Cooman <pcooman@civisanalytics.com>
Diff between civis versions 3.0.0 dated 2020-06-22 and 3.1.0 dated 2023-02-22
civis-3.0.0/civis/man/apps_delete_instances_projects.Rd |only civis-3.0.0/civis/man/apps_delete_instances_shares_groups.Rd |only civis-3.0.0/civis/man/apps_delete_instances_shares_users.Rd |only civis-3.0.0/civis/man/apps_delete_releases_shares_groups.Rd |only civis-3.0.0/civis/man/apps_delete_releases_shares_users.Rd |only civis-3.0.0/civis/man/apps_get.Rd |only civis-3.0.0/civis/man/apps_get_instances.Rd |only civis-3.0.0/civis/man/apps_get_releases.Rd |only civis-3.0.0/civis/man/apps_list.Rd |only civis-3.0.0/civis/man/apps_list_instances.Rd |only civis-3.0.0/civis/man/apps_list_instances_projects.Rd |only civis-3.0.0/civis/man/apps_list_instances_shares.Rd |only civis-3.0.0/civis/man/apps_list_releases.Rd |only civis-3.0.0/civis/man/apps_list_releases_shares.Rd |only civis-3.0.0/civis/man/apps_patch_instances.Rd |only civis-3.0.0/civis/man/apps_patch_releases.Rd |only civis-3.0.0/civis/man/apps_post_instances.Rd |only civis-3.0.0/civis/man/apps_post_releases.Rd |only 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civis-3.1.0/civis/man/clusters_get_kubernetes_instance_configs.Rd | 4 civis-3.1.0/civis/man/clusters_get_kubernetes_partitions.Rd | 2 civis-3.1.0/civis/man/clusters_list_kubernetes.Rd | 13 civis-3.1.0/civis/man/clusters_list_kubernetes_deployments.Rd | 2 civis-3.1.0/civis/man/clusters_list_kubernetes_instance_configs_active_workloads.Rd |only civis-3.1.0/civis/man/clusters_list_kubernetes_partitions.Rd | 2 civis-3.1.0/civis/man/clusters_patch_kubernetes.Rd | 8 civis-3.1.0/civis/man/clusters_patch_kubernetes_partitions.Rd | 4 civis-3.1.0/civis/man/clusters_post_kubernetes.Rd | 7 civis-3.1.0/civis/man/clusters_post_kubernetes_partitions.Rd | 4 civis-3.1.0/civis/man/credentials_delete.Rd |only civis-3.1.0/civis/man/credentials_get.Rd | 11 civis-3.1.0/civis/man/credentials_list.Rd | 20 civis-3.1.0/civis/man/credentials_list_dependencies.Rd |only civis-3.1.0/civis/man/credentials_list_types.Rd |only civis-3.1.0/civis/man/credentials_patch.Rd |only civis-3.1.0/civis/man/credentials_post.Rd | 23 civis-3.1.0/civis/man/credentials_post_authenticate.Rd | 13 civis-3.1.0/civis/man/credentials_put.Rd | 23 civis-3.1.0/civis/man/credentials_put_transfer.Rd |only civis-3.1.0/civis/man/databases_get_schema_privileges.Rd |only civis-3.1.0/civis/man/databases_get_table_privilegesschema_name.Rd |only civis-3.1.0/civis/man/databases_list_schemas.Rd | 6 civis-3.1.0/civis/man/databases_list_tables.Rd | 5 civis-3.1.0/civis/man/databases_list_tables_search.Rd | 5 civis-3.1.0/civis/man/download_civis.Rd | 8 civis-3.1.0/civis/man/enhancements_get_cass_ncoa.Rd | 7 civis-3.1.0/civis/man/enhancements_get_cass_ncoa_runs.Rd | 5 civis-3.1.0/civis/man/enhancements_get_civis_data_match.Rd | 10 civis-3.1.0/civis/man/enhancements_get_civis_data_match_runs.Rd | 5 civis-3.1.0/civis/man/enhancements_get_geocode.Rd | 6 civis-3.1.0/civis/man/enhancements_get_geocode_runs.Rd | 5 civis-3.1.0/civis/man/enhancements_list.Rd | 2 civis-3.1.0/civis/man/enhancements_list_cass_ncoa_dependencies.Rd |only civis-3.1.0/civis/man/enhancements_list_cass_ncoa_runs.Rd | 5 civis-3.1.0/civis/man/enhancements_list_civis_data_match_dependencies.Rd |only civis-3.1.0/civis/man/enhancements_list_civis_data_match_runs.Rd | 5 civis-3.1.0/civis/man/enhancements_list_geocode_dependencies.Rd |only civis-3.1.0/civis/man/enhancements_list_geocode_runs.Rd | 5 civis-3.1.0/civis/man/enhancements_patch_cass_ncoa.Rd | 17 civis-3.1.0/civis/man/enhancements_patch_civis_data_match.Rd | 19 civis-3.1.0/civis/man/enhancements_patch_geocode.Rd | 11 civis-3.1.0/civis/man/enhancements_post_cass_ncoa.Rd | 17 civis-3.1.0/civis/man/enhancements_post_cass_ncoa_runs.Rd | 5 civis-3.1.0/civis/man/enhancements_post_civis_data_match.Rd | 19 civis-3.1.0/civis/man/enhancements_post_civis_data_match_clone.Rd | 10 civis-3.1.0/civis/man/enhancements_post_civis_data_match_runs.Rd | 5 civis-3.1.0/civis/man/enhancements_post_geocode.Rd | 11 civis-3.1.0/civis/man/enhancements_post_geocode_runs.Rd | 5 civis-3.1.0/civis/man/enhancements_put_cass_ncoa.Rd | 17 civis-3.1.0/civis/man/enhancements_put_cass_ncoa_archive.Rd | 7 civis-3.1.0/civis/man/enhancements_put_cass_ncoa_transfer.Rd |only civis-3.1.0/civis/man/enhancements_put_civis_data_match.Rd | 19 civis-3.1.0/civis/man/enhancements_put_civis_data_match_archive.Rd | 10 civis-3.1.0/civis/man/enhancements_put_civis_data_match_transfer.Rd |only civis-3.1.0/civis/man/enhancements_put_geocode.Rd | 11 civis-3.1.0/civis/man/enhancements_put_geocode_archive.Rd | 6 civis-3.1.0/civis/man/enhancements_put_geocode_transfer.Rd |only civis-3.1.0/civis/man/exports_delete_files_csv_runs.Rd |only civis-3.1.0/civis/man/exports_get_files_csv.Rd | 1 civis-3.1.0/civis/man/exports_get_files_csv_runs.Rd |only civis-3.1.0/civis/man/exports_list.Rd | 6 civis-3.1.0/civis/man/exports_list_files_csv_runs.Rd |only civis-3.1.0/civis/man/exports_list_files_csv_runs_logs.Rd |only civis-3.1.0/civis/man/exports_list_files_csv_runs_outputs.Rd |only civis-3.1.0/civis/man/exports_patch_files_csv.Rd | 1 civis-3.1.0/civis/man/exports_post_files_csv.Rd | 1 civis-3.1.0/civis/man/exports_post_files_csv_runs.Rd |only civis-3.1.0/civis/man/exports_put_files_csv.Rd | 1 civis-3.1.0/civis/man/exports_put_files_csv_archive.Rd | 1 civis-3.1.0/civis/man/feature_flags_delete_organizations.Rd |only civis-3.1.0/civis/man/feature_flags_delete_users.Rd | 2 civis-3.1.0/civis/man/feature_flags_get.Rd | 5 civis-3.1.0/civis/man/feature_flags_list.Rd | 6 civis-3.1.0/civis/man/feature_flags_put_groups.Rd | 6 civis-3.1.0/civis/man/feature_flags_put_organizations.Rd |only civis-3.1.0/civis/man/feature_flags_put_users.Rd | 8 civis-3.1.0/civis/man/fetch_output_file_ids.Rd | 4 civis-3.1.0/civis/man/files_get.Rd | 1 civis-3.1.0/civis/man/files_list_dependencies.Rd |only civis-3.1.0/civis/man/files_patch.Rd | 1 civis-3.1.0/civis/man/files_post.Rd | 1 civis-3.1.0/civis/man/files_put.Rd | 1 civis-3.1.0/civis/man/files_put_transfer.Rd |only civis-3.1.0/civis/man/git_repos_list_refs.Rd |only civis-3.1.0/civis/man/groups_get.Rd | 16 civis-3.1.0/civis/man/groups_list.Rd | 15 civis-3.1.0/civis/man/groups_list_child_groups.Rd |only civis-3.1.0/civis/man/groups_patch.Rd | 25 civis-3.1.0/civis/man/groups_post.Rd | 25 civis-3.1.0/civis/man/groups_put.Rd | 25 civis-3.1.0/civis/man/groups_put_members.Rd | 16 civis-3.1.0/civis/man/imports_delete_files_csv_runs.Rd |only civis-3.1.0/civis/man/imports_get.Rd | 6 civis-3.1.0/civis/man/imports_get_files_csv.Rd | 1 civis-3.1.0/civis/man/imports_get_files_csv_runs.Rd |only civis-3.1.0/civis/man/imports_get_files_runs.Rd | 5 civis-3.1.0/civis/man/imports_list.Rd | 11 civis-3.1.0/civis/man/imports_list_dependencies.Rd |only civis-3.1.0/civis/man/imports_list_files_csv_runs.Rd |only civis-3.1.0/civis/man/imports_list_files_csv_runs_logs.Rd |only civis-3.1.0/civis/man/imports_list_files_runs.Rd | 5 civis-3.1.0/civis/man/imports_patch_files_csv.Rd | 1 civis-3.1.0/civis/man/imports_post.Rd | 11 civis-3.1.0/civis/man/imports_post_files_csv.Rd | 1 civis-3.1.0/civis/man/imports_post_files_csv_runs.Rd |only civis-3.1.0/civis/man/imports_post_files_runs.Rd | 5 civis-3.1.0/civis/man/imports_post_syncs.Rd | 4 civis-3.1.0/civis/man/imports_put.Rd | 11 civis-3.1.0/civis/man/imports_put_archive.Rd | 6 civis-3.1.0/civis/man/imports_put_files_csv.Rd | 1 civis-3.1.0/civis/man/imports_put_files_csv_archive.Rd | 1 civis-3.1.0/civis/man/imports_put_syncs.Rd | 4 civis-3.1.0/civis/man/imports_put_syncs_archive.Rd | 2 civis-3.1.0/civis/man/imports_put_transfer.Rd |only civis-3.1.0/civis/man/jobs_get.Rd | 14 civis-3.1.0/civis/man/jobs_list.Rd | 16 civis-3.1.0/civis/man/jobs_list_dependencies.Rd |only civis-3.1.0/civis/man/jobs_list_parents.Rd | 14 civis-3.1.0/civis/man/jobs_list_workflows.Rd | 5 civis-3.1.0/civis/man/jobs_put_archive.Rd | 14 civis-3.1.0/civis/man/jobs_put_transfer.Rd |only civis-3.1.0/civis/man/json_values_list_dependencies.Rd |only civis-3.1.0/civis/man/json_values_put_transfer.Rd |only civis-3.1.0/civis/man/media_get_optimizations_runs.Rd | 5 civis-3.1.0/civis/man/media_list_optimizations_runs.Rd | 5 civis-3.1.0/civis/man/media_post_optimizations_runs.Rd | 5 civis-3.1.0/civis/man/models_get.Rd | 5 civis-3.1.0/civis/man/models_list.Rd | 11 civis-3.1.0/civis/man/models_list_dependencies.Rd |only civis-3.1.0/civis/man/models_list_schedules.Rd | 5 civis-3.1.0/civis/man/models_put_archive.Rd | 5 civis-3.1.0/civis/man/models_put_transfer.Rd |only civis-3.1.0/civis/man/multipart_upload.Rd | 2 civis-3.1.0/civis/man/notebooks_get.Rd | 9 civis-3.1.0/civis/man/notebooks_get_deployments.Rd | 7 civis-3.1.0/civis/man/notebooks_get_git_commits.Rd | 4 civis-3.1.0/civis/man/notebooks_list.Rd | 9 civis-3.1.0/civis/man/notebooks_list_dependencies.Rd |only civis-3.1.0/civis/man/notebooks_list_deployments.Rd | 7 civis-3.1.0/civis/man/notebooks_list_git.Rd | 5 civis-3.1.0/civis/man/notebooks_list_git_commits.Rd | 4 civis-3.1.0/civis/man/notebooks_patch.Rd | 12 civis-3.1.0/civis/man/notebooks_patch_git.Rd |only civis-3.1.0/civis/man/notebooks_post.Rd | 12 civis-3.1.0/civis/man/notebooks_post_clone.Rd | 9 civis-3.1.0/civis/man/notebooks_post_deployments.Rd | 11 civis-3.1.0/civis/man/notebooks_post_git_checkout.Rd |only civis-3.1.0/civis/man/notebooks_post_git_checkout_latest.Rd |only civis-3.1.0/civis/man/notebooks_put.Rd | 12 civis-3.1.0/civis/man/notebooks_put_archive.Rd | 9 civis-3.1.0/civis/man/notebooks_put_git.Rd | 8 civis-3.1.0/civis/man/notebooks_put_transfer.Rd |only civis-3.1.0/civis/man/permission_sets_delete_resources.Rd |only civis-3.1.0/civis/man/permission_sets_delete_resources_shares_groups.Rd |only civis-3.1.0/civis/man/permission_sets_delete_resources_shares_users.Rd |only civis-3.1.0/civis/man/permission_sets_delete_shares_groups.Rd |only civis-3.1.0/civis/man/permission_sets_delete_shares_users.Rd |only civis-3.1.0/civis/man/permission_sets_get.Rd |only civis-3.1.0/civis/man/permission_sets_get_resources.Rd |only civis-3.1.0/civis/man/permission_sets_list.Rd |only civis-3.1.0/civis/man/permission_sets_list_dependencies.Rd |only civis-3.1.0/civis/man/permission_sets_list_resources.Rd |only civis-3.1.0/civis/man/permission_sets_list_resources_shares.Rd |only civis-3.1.0/civis/man/permission_sets_list_shares.Rd |only civis-3.1.0/civis/man/permission_sets_list_users_permissions.Rd |only civis-3.1.0/civis/man/permission_sets_patch.Rd |only civis-3.1.0/civis/man/permission_sets_patch_resources.Rd |only civis-3.1.0/civis/man/permission_sets_post.Rd |only civis-3.1.0/civis/man/permission_sets_post_resources.Rd |only civis-3.1.0/civis/man/permission_sets_put.Rd |only civis-3.1.0/civis/man/permission_sets_put_archive.Rd |only civis-3.1.0/civis/man/permission_sets_put_resources_shares_groups.Rd |only civis-3.1.0/civis/man/permission_sets_put_resources_shares_users.Rd |only civis-3.1.0/civis/man/permission_sets_put_shares_groups.Rd |only civis-3.1.0/civis/man/permission_sets_put_shares_users.Rd |only civis-3.1.0/civis/man/permission_sets_put_transfer.Rd |only civis-3.1.0/civis/man/predictions_get.Rd | 5 civis-3.1.0/civis/man/predictions_list_schedules.Rd | 5 civis-3.1.0/civis/man/projects_get.Rd | 12 civis-3.1.0/civis/man/projects_list.Rd | 9 civis-3.1.0/civis/man/projects_list_dependencies.Rd |only civis-3.1.0/civis/man/projects_post.Rd | 16 civis-3.1.0/civis/man/projects_post_clone.Rd |only civis-3.1.0/civis/man/projects_put.Rd | 22 civis-3.1.0/civis/man/projects_put_archive.Rd | 12 civis-3.1.0/civis/man/projects_put_auto_share.Rd |only civis-3.1.0/civis/man/projects_put_transfer.Rd |only civis-3.1.0/civis/man/queries_delete.Rd |only civis-3.1.0/civis/man/queries_get.Rd | 5 civis-3.1.0/civis/man/queries_get_runs.Rd | 5 civis-3.1.0/civis/man/queries_list.Rd | 32 civis-3.1.0/civis/man/queries_list_runs.Rd | 5 civis-3.1.0/civis/man/queries_post.Rd | 6 civis-3.1.0/civis/man/queries_post_runs.Rd | 5 civis-3.1.0/civis/man/queries_put_scripts.Rd | 5 civis-3.1.0/civis/man/query_civis.Rd | 8 civis-3.1.0/civis/man/query_civis_file.Rd | 8 civis-3.1.0/civis/man/read_civis.Rd | 10 civis-3.1.0/civis/man/remote_hosts_delete_shares_groups.Rd |only civis-3.1.0/civis/man/remote_hosts_delete_shares_users.Rd |only civis-3.1.0/civis/man/remote_hosts_get.Rd |only civis-3.1.0/civis/man/remote_hosts_list.Rd | 12 civis-3.1.0/civis/man/remote_hosts_list_shares.Rd |only civis-3.1.0/civis/man/remote_hosts_patch.Rd |only civis-3.1.0/civis/man/remote_hosts_post.Rd | 26 civis-3.1.0/civis/man/remote_hosts_put.Rd |only civis-3.1.0/civis/man/remote_hosts_put_shares_groups.Rd |only civis-3.1.0/civis/man/remote_hosts_put_shares_users.Rd |only civis-3.1.0/civis/man/reports_get.Rd | 1 civis-3.1.0/civis/man/reports_get_git_commits.Rd | 4 civis-3.1.0/civis/man/reports_get_services.Rd | 2 civis-3.1.0/civis/man/reports_list.Rd | 6 civis-3.1.0/civis/man/reports_list_dependencies.Rd |only civis-3.1.0/civis/man/reports_list_git.Rd | 5 civis-3.1.0/civis/man/reports_list_git_commits.Rd | 4 civis-3.1.0/civis/man/reports_list_services_dependencies.Rd |only civis-3.1.0/civis/man/reports_patch.Rd | 1 civis-3.1.0/civis/man/reports_patch_git.Rd |only civis-3.1.0/civis/man/reports_patch_services.Rd | 2 civis-3.1.0/civis/man/reports_post.Rd | 1 civis-3.1.0/civis/man/reports_post_git_checkout.Rd |only civis-3.1.0/civis/man/reports_post_git_checkout_latest.Rd |only civis-3.1.0/civis/man/reports_post_grants.Rd | 1 civis-3.1.0/civis/man/reports_post_services.Rd | 2 civis-3.1.0/civis/man/reports_put_archive.Rd | 1 civis-3.1.0/civis/man/reports_put_git.Rd | 8 civis-3.1.0/civis/man/reports_put_services_archive.Rd |only civis-3.1.0/civis/man/reports_put_services_transfer.Rd |only civis-3.1.0/civis/man/reports_put_transfer.Rd |only civis-3.1.0/civis/man/roles_list.Rd |only civis-3.1.0/civis/man/scripts_get.Rd | 6 civis-3.1.0/civis/man/scripts_get_containers.Rd | 18 civis-3.1.0/civis/man/scripts_get_containers_runs.Rd | 7 civis-3.1.0/civis/man/scripts_get_custom.Rd | 20 civis-3.1.0/civis/man/scripts_get_custom_runs.Rd | 7 civis-3.1.0/civis/man/scripts_get_javascript.Rd | 7 civis-3.1.0/civis/man/scripts_get_javascript_git_commits.Rd | 4 civis-3.1.0/civis/man/scripts_get_javascript_runs.Rd | 5 civis-3.1.0/civis/man/scripts_get_python3.Rd | 8 civis-3.1.0/civis/man/scripts_get_python3_git_commits.Rd | 4 civis-3.1.0/civis/man/scripts_get_python3_runs.Rd | 7 civis-3.1.0/civis/man/scripts_get_r.Rd | 8 civis-3.1.0/civis/man/scripts_get_r_git_commits.Rd | 4 civis-3.1.0/civis/man/scripts_get_r_runs.Rd | 7 civis-3.1.0/civis/man/scripts_get_sql.Rd | 7 civis-3.1.0/civis/man/scripts_get_sql_git_commits.Rd | 4 civis-3.1.0/civis/man/scripts_get_sql_runs.Rd | 14 civis-3.1.0/civis/man/scripts_list.Rd | 2 civis-3.1.0/civis/man/scripts_list_containers_dependencies.Rd |only civis-3.1.0/civis/man/scripts_list_containers_runs.Rd | 7 civis-3.1.0/civis/man/scripts_list_custom.Rd | 2 civis-3.1.0/civis/man/scripts_list_custom_dependencies.Rd |only civis-3.1.0/civis/man/scripts_list_custom_runs.Rd | 7 civis-3.1.0/civis/man/scripts_list_javascript_dependencies.Rd |only civis-3.1.0/civis/man/scripts_list_javascript_git.Rd | 5 civis-3.1.0/civis/man/scripts_list_javascript_git_commits.Rd | 4 civis-3.1.0/civis/man/scripts_list_javascript_runs.Rd | 5 civis-3.1.0/civis/man/scripts_list_python3_dependencies.Rd |only civis-3.1.0/civis/man/scripts_list_python3_git.Rd | 5 civis-3.1.0/civis/man/scripts_list_python3_git_commits.Rd | 4 civis-3.1.0/civis/man/scripts_list_python3_runs.Rd | 7 civis-3.1.0/civis/man/scripts_list_r_dependencies.Rd |only civis-3.1.0/civis/man/scripts_list_r_git.Rd | 5 civis-3.1.0/civis/man/scripts_list_r_git_commits.Rd | 4 civis-3.1.0/civis/man/scripts_list_r_runs.Rd | 7 civis-3.1.0/civis/man/scripts_list_sql_dependencies.Rd |only civis-3.1.0/civis/man/scripts_list_sql_git.Rd | 5 civis-3.1.0/civis/man/scripts_list_sql_git_commits.Rd | 4 civis-3.1.0/civis/man/scripts_list_sql_runs.Rd | 14 civis-3.1.0/civis/man/scripts_patch.Rd | 16 civis-3.1.0/civis/man/scripts_patch_container_runs.Rd |only civis-3.1.0/civis/man/scripts_patch_containers.Rd | 36 civis-3.1.0/civis/man/scripts_patch_custom.Rd | 41 civis-3.1.0/civis/man/scripts_patch_javascript.Rd | 17 civis-3.1.0/civis/man/scripts_patch_javascript_git.Rd |only civis-3.1.0/civis/man/scripts_patch_javascript_runs.Rd |only civis-3.1.0/civis/man/scripts_patch_python3.Rd | 21 civis-3.1.0/civis/man/scripts_patch_python3_git.Rd |only civis-3.1.0/civis/man/scripts_patch_python3_runs.Rd |only civis-3.1.0/civis/man/scripts_patch_r.Rd | 21 civis-3.1.0/civis/man/scripts_patch_r_git.Rd |only civis-3.1.0/civis/man/scripts_patch_r_runs.Rd |only civis-3.1.0/civis/man/scripts_patch_sql.Rd | 17 civis-3.1.0/civis/man/scripts_patch_sql_git.Rd |only civis-3.1.0/civis/man/scripts_patch_sql_runs.Rd |only civis-3.1.0/civis/man/scripts_post.Rd | 6 civis-3.1.0/civis/man/scripts_post_containers.Rd | 36 civis-3.1.0/civis/man/scripts_post_containers_clone.Rd | 18 civis-3.1.0/civis/man/scripts_post_containers_runs.Rd | 7 civis-3.1.0/civis/man/scripts_post_custom.Rd | 41 civis-3.1.0/civis/man/scripts_post_custom_clone.Rd | 20 civis-3.1.0/civis/man/scripts_post_custom_runs.Rd | 7 civis-3.1.0/civis/man/scripts_post_javascript.Rd | 17 civis-3.1.0/civis/man/scripts_post_javascript_clone.Rd | 7 civis-3.1.0/civis/man/scripts_post_javascript_git_checkout.Rd |only civis-3.1.0/civis/man/scripts_post_javascript_git_checkout_latest.Rd |only civis-3.1.0/civis/man/scripts_post_javascript_runs.Rd | 5 civis-3.1.0/civis/man/scripts_post_python3.Rd | 21 civis-3.1.0/civis/man/scripts_post_python3_clone.Rd | 8 civis-3.1.0/civis/man/scripts_post_python3_git_checkout.Rd |only civis-3.1.0/civis/man/scripts_post_python3_git_checkout_latest.Rd |only civis-3.1.0/civis/man/scripts_post_python3_runs.Rd | 7 civis-3.1.0/civis/man/scripts_post_r.Rd | 21 civis-3.1.0/civis/man/scripts_post_r_clone.Rd | 8 civis-3.1.0/civis/man/scripts_post_r_git_checkout.Rd |only civis-3.1.0/civis/man/scripts_post_r_git_checkout_latest.Rd |only civis-3.1.0/civis/man/scripts_post_r_runs.Rd | 7 civis-3.1.0/civis/man/scripts_post_sql.Rd | 17 civis-3.1.0/civis/man/scripts_post_sql_clone.Rd | 7 civis-3.1.0/civis/man/scripts_post_sql_git_checkout.Rd |only civis-3.1.0/civis/man/scripts_post_sql_git_checkout_latest.Rd |only civis-3.1.0/civis/man/scripts_post_sql_runs.Rd | 14 civis-3.1.0/civis/man/scripts_put_containers.Rd | 36 civis-3.1.0/civis/man/scripts_put_containers_archive.Rd | 18 civis-3.1.0/civis/man/scripts_put_containers_transfer.Rd |only civis-3.1.0/civis/man/scripts_put_custom.Rd | 41 civis-3.1.0/civis/man/scripts_put_custom_archive.Rd | 20 civis-3.1.0/civis/man/scripts_put_custom_transfer.Rd |only civis-3.1.0/civis/man/scripts_put_javascript.Rd | 17 civis-3.1.0/civis/man/scripts_put_javascript_archive.Rd | 7 civis-3.1.0/civis/man/scripts_put_javascript_git.Rd | 8 civis-3.1.0/civis/man/scripts_put_javascript_transfer.Rd |only civis-3.1.0/civis/man/scripts_put_python3.Rd | 21 civis-3.1.0/civis/man/scripts_put_python3_archive.Rd | 8 civis-3.1.0/civis/man/scripts_put_python3_git.Rd | 8 civis-3.1.0/civis/man/scripts_put_python3_transfer.Rd |only civis-3.1.0/civis/man/scripts_put_r.Rd | 21 civis-3.1.0/civis/man/scripts_put_r_archive.Rd | 8 civis-3.1.0/civis/man/scripts_put_r_git.Rd | 8 civis-3.1.0/civis/man/scripts_put_r_transfer.Rd |only civis-3.1.0/civis/man/scripts_put_sql.Rd | 17 civis-3.1.0/civis/man/scripts_put_sql_archive.Rd | 7 civis-3.1.0/civis/man/scripts_put_sql_git.Rd | 8 civis-3.1.0/civis/man/scripts_put_sql_transfer.Rd |only civis-3.1.0/civis/man/search_list.Rd | 1 civis-3.1.0/civis/man/search_list_queries.Rd |only civis-3.1.0/civis/man/services_get.Rd | 30 civis-3.1.0/civis/man/services_get_deployments.Rd | 7 civis-3.1.0/civis/man/services_list.Rd | 27 civis-3.1.0/civis/man/services_list_dependencies.Rd |only civis-3.1.0/civis/man/services_list_deployments.Rd | 7 civis-3.1.0/civis/man/services_list_tokens.Rd | 1 civis-3.1.0/civis/man/services_patch.Rd | 38 civis-3.1.0/civis/man/services_post.Rd | 36 civis-3.1.0/civis/man/services_post_clone.Rd | 30 civis-3.1.0/civis/man/services_post_deployments.Rd | 11 civis-3.1.0/civis/man/services_post_redeploy.Rd | 11 civis-3.1.0/civis/man/services_post_tokens.Rd | 5 civis-3.1.0/civis/man/services_put.Rd | 38 civis-3.1.0/civis/man/services_put_archive.Rd | 30 civis-3.1.0/civis/man/services_put_transfer.Rd |only civis-3.1.0/civis/man/storage_hosts_list_dependencies.Rd |only civis-3.1.0/civis/man/storage_hosts_put_transfer.Rd |only civis-3.1.0/civis/man/table_tags_delete.Rd |only civis-3.1.0/civis/man/table_tags_get.Rd |only civis-3.1.0/civis/man/table_tags_list.Rd |only civis-3.1.0/civis/man/table_tags_post.Rd |only civis-3.1.0/civis/man/tables_delete_tags.Rd |only civis-3.1.0/civis/man/tables_get.Rd | 11 civis-3.1.0/civis/man/tables_get_enhancements_cass_ncoa.Rd | 1 civis-3.1.0/civis/man/tables_list.Rd | 13 civis-3.1.0/civis/man/tables_list_columns.Rd | 6 civis-3.1.0/civis/man/tables_patch.Rd | 5 civis-3.1.0/civis/man/tables_post_enhancements_cass_ncoa.Rd | 6 civis-3.1.0/civis/man/tables_post_refresh.Rd | 11 civis-3.1.0/civis/man/tables_put_tags.Rd |only civis-3.1.0/civis/man/templates_get_reports.Rd | 2 civis-3.1.0/civis/man/templates_get_scripts.Rd | 20 civis-3.1.0/civis/man/templates_list_reports.Rd | 5 civis-3.1.0/civis/man/templates_list_reports_dependencies.Rd |only civis-3.1.0/civis/man/templates_list_scripts.Rd | 11 civis-3.1.0/civis/man/templates_list_scripts_dependencies.Rd |only civis-3.1.0/civis/man/templates_patch_reports.Rd | 2 civis-3.1.0/civis/man/templates_patch_scripts.Rd | 20 civis-3.1.0/civis/man/templates_post_reports.Rd | 2 civis-3.1.0/civis/man/templates_post_reports_review.Rd | 2 civis-3.1.0/civis/man/templates_post_scripts.Rd | 20 civis-3.1.0/civis/man/templates_post_scripts_review.Rd | 20 civis-3.1.0/civis/man/templates_put_reports.Rd | 2 civis-3.1.0/civis/man/templates_put_reports_transfer.Rd |only civis-3.1.0/civis/man/templates_put_scripts.Rd | 20 civis-3.1.0/civis/man/templates_put_scripts_transfer.Rd |only civis-3.1.0/civis/man/users_delete_2fa.Rd |only civis-3.1.0/civis/man/users_delete_me_superadmin.Rd |only civis-3.1.0/civis/man/users_delete_sessions.Rd |only civis-3.1.0/civis/man/users_get.Rd | 15 civis-3.1.0/civis/man/users_get_me_themes.Rd |only civis-3.1.0/civis/man/users_list.Rd | 22 civis-3.1.0/civis/man/users_list_me.Rd | 8 civis-3.1.0/civis/man/users_list_me_themes.Rd |only civis-3.1.0/civis/man/users_list_me_ui.Rd | 4 civis-3.1.0/civis/man/users_patch.Rd | 26 civis-3.1.0/civis/man/users_patch_me.Rd | 25 civis-3.1.0/civis/man/users_post.Rd | 21 civis-3.1.0/civis/man/users_post_me_superadmin.Rd |only civis-3.1.0/civis/man/users_post_unsuspend.Rd |only civis-3.1.0/civis/man/workflows_get.Rd | 6 civis-3.1.0/civis/man/workflows_get_executions_tasks.Rd | 2 civis-3.1.0/civis/man/workflows_get_git_commits.Rd | 4 civis-3.1.0/civis/man/workflows_list.Rd | 7 civis-3.1.0/civis/man/workflows_list_dependencies.Rd |only civis-3.1.0/civis/man/workflows_list_git.Rd | 5 civis-3.1.0/civis/man/workflows_list_git_commits.Rd | 4 civis-3.1.0/civis/man/workflows_patch.Rd | 11 civis-3.1.0/civis/man/workflows_patch_git.Rd |only civis-3.1.0/civis/man/workflows_post.Rd | 11 civis-3.1.0/civis/man/workflows_post_clone.Rd | 6 civis-3.1.0/civis/man/workflows_post_executions.Rd | 2 civis-3.1.0/civis/man/workflows_post_git_checkout.Rd |only civis-3.1.0/civis/man/workflows_post_git_checkout_latest.Rd |only civis-3.1.0/civis/man/workflows_put.Rd | 11 civis-3.1.0/civis/man/workflows_put_archive.Rd | 6 civis-3.1.0/civis/man/workflows_put_git.Rd | 8 civis-3.1.0/civis/man/workflows_put_transfer.Rd |only civis-3.1.0/civis/man/write_civis.Rd | 8 civis-3.1.0/civis/man/write_civis_file.Rd | 8 civis-3.1.0/civis/vignettes/civis_ml.Rmd | 22 civis-3.1.0/civis/vignettes/quick_start.Rmd | 2 478 files changed, 10733 insertions(+), 4048 deletions(-)
Title: Risk Metrics to Evaluating R Packages
Description: Facilities for assessing R packages against a number of metrics to
help quantify their robustness.
Author: R Validation Hub [aut],
Doug Kelkhoff [aut],
Marly Gotti [aut],
Eli Miller [cre, aut],
Kevin K [aut],
Yilong Zhang [aut],
Eric Milliman [aut],
Juliane Manitz [aut],
Mark Padgham [ctb],
PSI special interest group Application and Implementation of
Meth [...truncated...]
Maintainer: Eli Miller <eli.miller@atorusresearch.com>
Diff between riskmetric versions 0.1.2 dated 2022-01-28 and 0.2.0 dated 2023-02-22
DESCRIPTION | 8 MD5 | 70 + NAMESPACE | 19 NEWS.md | 9 R/assess_dependencies.R |only R/assess_exported_namespace.R | 16 R/assess_has_bug_reports_url.R | 19 R/assess_r_cmd_check.R | 18 R/assess_remote_checks.R | 12 R/assess_reverse_dependencies.R |only R/assess_size_codebase.R |only R/metric_score.R | 3 R/pkg_assess.R | 28 R/pkg_ref_cache_archive_release_date.R | 2 R/pkg_ref_cache_bug_reports_url.R | 5 R/pkg_ref_cache_downloads.R | 5 R/pkg_ref_class.R | 1 README.md | 29 build/vignette.rds |binary inst/doc/extending-riskmetric.html | 553 +++++++++++--- inst/doc/riskmetric.Rmd | 2 inst/doc/riskmetric.html | 742 +++++++++++++++----- man/assess_dependencies.Rd |only man/assess_reverse_dependencies.Rd |only man/assess_size_codebase.Rd |only man/figures/hex-riskassessment-aspconfig.png |only man/figures/hex-riskmetric-aspconfig.png |only man/figures/rm-gauge.png |only man/firstS3method.Rd | 2 man/get_assessments.Rd |only man/get_package_dependencies.Rd |only man/get_pkg_ref_classes.Rd | 1 man/metric_score.pkg_metric_dependencies.Rd |only man/metric_score.pkg_metric_exported_namespace.Rd | 15 man/metric_score.pkg_metric_r_cmd_check.Rd | 4 man/metric_score.pkg_metric_reverse_dependencies.Rd |only man/metric_score.pkg_metric_size_codebase.Rd |only man/parse_dcf_dependencies.Rd |only man/pkg_assess.Rd | 21 man/pkg_ref_cache.downloads.Rd | 4 man/remove_base_packages.Rd |only tests/testthat/test_assess_dependencies.R |only tests/testthat/test_assess_has_bug_reports_url.R | 6 tests/testthat/test_metric_score_range.R |only vignettes/riskmetric.Rmd | 2 45 files changed, 1184 insertions(+), 412 deletions(-)
Title: Tools for Working with Posterior Distributions
Description: Provides useful tools for both users and developers of packages
for fitting Bayesian models or working with output from Bayesian models.
The primary goals of the package are to:
(a) Efficiently convert between many different useful formats of
draws (samples) from posterior or prior distributions.
(b) Provide consistent methods for operations commonly performed on draws,
for example, subsetting, binding, or mutating draws.
(c) Provide various summaries of draws in convenient formats.
(d) Provide lightweight implementations of state of the art posterior
inference diagnostics. References: Vehtari et al. (2021)
<doi:10.1214/20-BA1221>.
Author: Paul-Christian Buerkner [aut, cre],
Jonah Gabry [aut],
Matthew Kay [aut],
Aki Vehtari [aut],
Mans Magnusson [ctb],
Rok Česnovar [ctb],
Ben Lambert [ctb],
Ozan Adiguezel [ctb],
Jacob Socolar [ctb]
Maintainer: Paul-Christian Buerkner <paul.buerkner@gmail.com>
Diff between posterior versions 1.3.1 dated 2022-09-06 and 1.4.0 dated 2023-02-22
DESCRIPTION | 18 MD5 | 128 +++--- NAMESPACE | 85 ++++ NEWS.md | 34 + R/as_draws.R | 26 + R/as_draws_array.R | 7 R/as_draws_df.R | 22 - R/as_draws_list.R | 2 R/as_draws_matrix.R | 8 R/as_draws_rvars.R | 42 +- R/bind_draws.R | 7 R/convergence.R | 6 R/discrete-summaries.R |only R/for_each_draw.R | 20 R/posterior-package.R | 8 R/rvar-.R | 271 +++++++++++-- R/rvar-apply.R | 6 R/rvar-bind.R | 34 + R/rvar-cast.R | 326 +++++++++++++-- R/rvar-dist.R | 46 ++ R/rvar-factor.R |only R/rvar-math.R | 81 +++ R/rvar-print.R | 138 +++++- R/rvar-rfun.R | 18 R/rvar-summaries-over-draws.R | 68 ++- R/rvar-summaries-within-draws.R | 61 ++ R/summarise_draws.R | 18 R/zzz.R | 2 README.md | 123 +++-- build/partial.rdb |only build/vignette.rds |binary inst/doc/posterior.html | 395 +++++++++--------- inst/doc/rvar.R | 14 inst/doc/rvar.Rmd | 52 ++ inst/doc/rvar.html | 458 ++++++++++++---------- man/as_rvar.Rd | 15 man/as_rvar_factor.Rd |only man/dissent.Rd |only man/draws_summary.Rd | 15 man/entropy.Rd |only man/is_rvar_factor.Rd |only man/match.Rd |only man/modal_category.Rd |only man/posterior-package.Rd | 8 man/print.draws_array.Rd | 2 man/print.draws_df.Rd | 2 man/print.draws_list.Rd | 2 man/print.draws_matrix.Rd | 2 man/print.draws_rvars.Rd | 19 man/print.rvar.Rd | 39 + man/rvar-dist.Rd | 15 man/rvar-summaries-over-draws.Rd | 3 man/rvar.Rd | 10 man/rvar_factor.Rd |only tests/testthat/test-as_draws.R | 72 +++ tests/testthat/test-bind_draws.R | 15 tests/testthat/test-convergence.R | 7 tests/testthat/test-discrete-summaries.R |only tests/testthat/test-rvar-.R | 81 ++- tests/testthat/test-rvar-apply.R | 46 ++ tests/testthat/test-rvar-bind.R | 190 +++++++++ tests/testthat/test-rvar-cast.R | 175 ++++++++ tests/testthat/test-rvar-dist.R | 24 + tests/testthat/test-rvar-factor.R |only tests/testthat/test-rvar-math.R | 154 +++++++ tests/testthat/test-rvar-print.R | 129 +++++- tests/testthat/test-rvar-summaries-over-draws.R | 75 +++ tests/testthat/test-rvar-summaries-within-draws.R | 57 ++ tests/testthat/test-summarise_draws.R | 15 tests/testthat/test-weight_draws.R | 26 + vignettes/rvar.Rmd | 52 ++ 71 files changed, 2996 insertions(+), 778 deletions(-)
Title: Parallel Dynamic Web-Scraping Using 'RSelenium'
Description: A system to increase the efficiency of dynamic web-scraping with 'RSelenium'
by leveraging parallel processing. You provide a function wrapper for your 'RSelenium'
scraping routine with a set of inputs, and 'parsel' runs it in several browser instances.
Chunked input processing as well as error catching and logging ensures seamless
execution and minimal data loss, even when unforeseen 'RSelenium' errors occur. You can additionally
build safe scraping functions with minimal coding by utilizing constructor functions that act as wrappers
around 'RSelenium' methods.
Author: Till Tietz [cre, aut]
Maintainer: Till Tietz <ttietz2014@gmail.com>
Diff between parsel versions 0.2.1 dated 2022-08-15 and 0.3.0 dated 2023-02-22
DESCRIPTION | 12 LICENSE | 4 MD5 | 58 - NAMESPACE | 8 NEWS.md | 36 - R/close_rselenium.R | 26 R/constructors_build.R | 127 +++- R/constructors_elements.R | 756 ++++++++++++------------- R/constructors_navigation.R | 248 ++++---- R/constructors_pipe.R | 128 ++-- R/parscrape.R | 412 ++++++------- R/parsel-package.R | 18 README.md | 420 +++++++------ man/build_scraper.Rd |only man/click.Rd | 72 +- man/close_rselenium.Rd | 36 - man/gen_varname.Rd | 36 - man/get_element.Rd | 112 +-- man/go.Rd | 54 - man/goback.Rd | 50 - man/goforward.Rd | 50 - man/grapes-greater-than-greater-than-grapes.Rd | 56 - man/parscrape.Rd | 142 ++-- man/parsel-package.Rd | 46 - man/show.Rd | 52 - man/start_scraper.Rd |only man/type.Rd | 120 +-- tests/testthat.R | 8 tests/testthat/test_constructors.R | 134 ++-- tests/testthat/test_input_handling.R | 102 +-- tests/testthat/test_output.R | 118 +-- 31 files changed, 1792 insertions(+), 1649 deletions(-)
Title: Detect SDGs and Targets in Text
Description: Identify 17 Sustainable Development Goals and associated 169 targets in text.
Author: Yingjie Li [aut, cre] ,
Yongze Song [aut] ,
Veronica Frans [aut],
Meng Cai [aut],
Yuqian Zhang [aut],
Jianguo Liu [aut]
Maintainer: Yingjie Li <yingjieli.edu@gmail.com>
Diff between SDGdetector versions 2.7 dated 2023-01-10 and 2.7.1 dated 2023-02-22
DESCRIPTION | 38 ++++++++++++------------- MD5 | 57 ++++++++++++++++++++++++++++++++------ NAMESPACE | 7 ++++ NEWS.md |only R/SDG_keys.R |only R/SDGdetector.R | 3 +- R/add_sdg_pattern.R |only R/data.R | 44 +++++++++++++++++++++++++++++ R/helper_SDG_search_terms.R |only R/plot_sdg_bar.R | 5 ++- R/plot_sdg_map.R | 8 ++++- R/sdg_color.R |only R/sdg_icon.R |only README.md |only data/codelist_panel.rda |only data/list_of_un_goals_targets.rda |only data/sdg_icons.rda |only inst/CITATION | 21 +++++++------- inst/extdata |only man/SDG_keys.Rd | 23 ++++++++++++++- man/add_sdg_pattern.Rd |only man/codelist_panel.Rd |only man/func_AND_vector.Rd |only man/func_OR_vector.Rd |only man/list_of_un_goals_targets.Rd |only man/lookaround_nearby_n.Rd |only man/plot_sdg_map.Rd | 2 - man/sdg_color.Rd |only man/sdg_icon.Rd |only man/sdg_icons.Rd |only tests |only 31 files changed, 161 insertions(+), 47 deletions(-)
Title: 'GitHub' 'API'
Description: Minimal client to access the 'GitHub' 'API'.
Author: Gabor Csardi [cre, ctb],
Jennifer Bryan [aut],
Hadley Wickham [aut],
RStudio [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between gh versions 1.3.1 dated 2022-09-08 and 1.4.0 dated 2023-02-22
gh-1.3.1/gh/tests/testthat/test-errors.R |only gh-1.4.0/gh/DESCRIPTION | 11 - gh-1.4.0/gh/MD5 | 58 ++--- gh-1.4.0/gh/NAMESPACE | 14 - gh-1.4.0/gh/NEWS.md | 21 + gh-1.4.0/gh/R/gh-package.R | 5 gh-1.4.0/gh/R/gh.R | 150 +++++++++++--- gh-1.4.0/gh/R/gh_rate_limit.R | 33 ++- gh-1.4.0/gh/R/gh_request.R | 53 ++-- gh-1.4.0/gh/R/gh_response.R | 78 ++----- gh-1.4.0/gh/R/gh_token.R | 9 gh-1.4.0/gh/R/pagination.R | 10 gh-1.4.0/gh/R/print.R | 4 gh-1.4.0/gh/R/utils.R | 4 gh-1.4.0/gh/README.md | 58 ++--- gh-1.4.0/gh/build/vignette.rds |binary gh-1.4.0/gh/inst/WORDLIST | 1 gh-1.4.0/gh/inst/doc/managing-personal-access-tokens.html | 111 +++++----- gh-1.4.0/gh/man/gh.Rd | 10 gh-1.4.0/gh/man/gh_rate_limit.Rd | 11 - gh-1.4.0/gh/tests/testthat/_snaps/gh.md |only gh-1.4.0/gh/tests/testthat/_snaps/gh_response.md |only gh-1.4.0/gh/tests/testthat/_snaps/gh_whoami.md |only gh-1.4.0/gh/tests/testthat/_snaps/print.md |only gh-1.4.0/gh/tests/testthat/helper-offline.R | 22 +- gh-1.4.0/gh/tests/testthat/helper.R | 13 - gh-1.4.0/gh/tests/testthat/test-gh.R | 24 ++ gh-1.4.0/gh/tests/testthat/test-gh_rate_limit.R | 2 gh-1.4.0/gh/tests/testthat/test-gh_response.R |only gh-1.4.0/gh/tests/testthat/test-gh_token.R | 3 gh-1.4.0/gh/tests/testthat/test-gh_whoami.R | 41 +-- gh-1.4.0/gh/tests/testthat/test-mock-repos.R | 144 +------------ gh-1.4.0/gh/tests/testthat/test-pagination.R |only gh-1.4.0/gh/tests/testthat/test-print.R |only 34 files changed, 462 insertions(+), 428 deletions(-)
Title: Coarsened Variable Modeling
Description: Extends R's implementation of categorical variables (factors)
to handle coarsened observations; implements log-linear models for
coarsened categorical data, including latent-class models. Detailed
information and examples are provided in the package vignettes.
Author: Joseph L. Schafer <Joseph.L.Schafer@census.gov>
Maintainer: Joseph L. Schafer <Joseph.L.Schafer@census.gov>
Diff between cvam versions 0.9.2 dated 2021-10-18 and 0.9.3 dated 2023-02-22
cvam-0.9.2/cvam/R/cvamMlogit.R |only cvam-0.9.2/cvam/man/cvamlik.Rd |only cvam-0.9.3/cvam/ChangeLog | 25 cvam-0.9.3/cvam/DESCRIPTION | 8 cvam-0.9.3/cvam/MD5 | 76 cvam-0.9.3/cvam/NAMESPACE | 3 cvam-0.9.3/cvam/NEWS | 6 cvam-0.9.3/cvam/R/cvamLogitWide.R |only cvam-0.9.3/cvam/R/cvamModel.R | 8994 ++- cvam-0.9.3/cvam/R/miInference.R | 6 cvam-0.9.3/cvam/R/sysdata.rda |binary cvam-0.9.3/cvam/build/partial.rdb |binary cvam-0.9.3/cvam/build/vignette.rds |binary cvam-0.9.3/cvam/data/abortion2000.rda |binary cvam-0.9.3/cvam/data/cig2019.rda |binary cvam-0.9.3/cvam/data/crime.rda |binary cvam-0.9.3/cvam/data/hivtest.rda |binary cvam-0.9.3/cvam/data/microUCBAdmissions.rda |binary cvam-0.9.3/cvam/data/seatbelt.rda |binary cvam-0.9.3/cvam/data/strokePatients.rda |only cvam-0.9.3/cvam/inst/doc/FittingLogLinearModelsInCvam.Rnw | 4 cvam-0.9.3/cvam/inst/doc/FittingLogLinearModelsInCvam.pdf |binary cvam-0.9.3/cvam/inst/doc/UnderstandingCoarsenedFactorsInCvam.pdf |binary cvam-0.9.3/cvam/man/cvam.Rd | 4 cvam-0.9.3/cvam/man/cvamControl.Rd | 2 cvam-0.9.3/cvam/man/cvamImpute.Rd | 6 cvam-0.9.3/cvam/man/cvamLik.Rd |only cvam-0.9.3/cvam/man/strokePatients.Rd |only cvam-0.9.3/cvam/man/summary.cvam.Rd | 2 cvam-0.9.3/cvam/src/cvam.f90 | 178 cvam-0.9.3/cvam/src/cvam_engine.f90 |24502 +++++----- cvam-0.9.3/cvam/src/cvam_init.c | 12 cvam-0.9.3/cvam/src/error_handler.f90 | 4 cvam-0.9.3/cvam/src/icodes_2.h | 8 cvam-0.9.3/cvam/src/icodes_3.h | 35 cvam-0.9.3/cvam/tests/UCBAdmissionsTests.Rout.save | 4 cvam-0.9.3/cvam/tests/abortion2000Tests.Rout.save | 8 cvam-0.9.3/cvam/tests/crimeTests.Rout.save | 4 cvam-0.9.3/cvam/tests/hivtestTests.Rout.save | 2 cvam-0.9.3/cvam/tests/strZeroTests.R |only cvam-0.9.3/cvam/tests/strZeroTests.Rout.save |only cvam-0.9.3/cvam/vignettes/FittingLogLinearModelsInCvam.Rnw | 4 cvam-0.9.3/cvam/vignettes/cvamBibliography.bib | 10 43 files changed, 18426 insertions(+), 15481 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of
use. Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions. Various
matrix decompositions are provided through optional integration with
LAPACK and ATLAS libraries. The 'RcppArmadillo' package includes the
header files from the templated 'Armadillo' library. Thus users do
not need to install 'Armadillo' itself in order to use
'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is licensed
under Apache License 2; previous releases were under licensed as MPL
2.0 from version 3.800.0 onwards and LGPL-3 prior to that;
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed
under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Dirk Eddelbuettel, Romain Francois, Doug Bates, Binxiang Ni, and Conrad Sanderson
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.11.4.4.0 dated 2023-02-10 and 0.12.0.1.0 dated 2023-02-22
RcppArmadillo-0.11.4.4.0/RcppArmadillo/inst/include/armadillo_bits/config.hpp.cmake |only RcppArmadillo-0.11.4.4.0/RcppArmadillo/inst/include/armadillo_bits/def_hdf5.hpp |only RcppArmadillo-0.11.4.4.0/RcppArmadillo/inst/include/armadillo_bits/fft_engine.hpp |only RcppArmadillo-0.11.4.4.0/RcppArmadillo/inst/include/armadillo_bits/sympd_helper.hpp |only RcppArmadillo-0.12.0.1.0/RcppArmadillo/ChangeLog | 14 RcppArmadillo-0.12.0.1.0/RcppArmadillo/DESCRIPTION | 8 RcppArmadillo-0.12.0.1.0/RcppArmadillo/MD5 | 265 ++++---- RcppArmadillo-0.12.0.1.0/RcppArmadillo/configure | 18 RcppArmadillo-0.12.0.1.0/RcppArmadillo/configure.ac | 2 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/NEWS.Rd | 26 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/doc/RcppArmadillo-intro.pdf |binary RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/doc/RcppArmadillo-sparseMatrix.pdf |binary RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo | 25 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/BaseCube_bones.hpp | 27 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/BaseCube_meat.hpp | 37 - RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/Base_bones.hpp | 68 +- RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/Base_meat.hpp | 39 - RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/Col_bones.hpp | 56 - RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/Col_meat.hpp | 29 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/CubeToMatOp_bones.hpp | 6 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/CubeToMatOp_meat.hpp | 4 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/Cube_bones.hpp | 108 +-- RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/Cube_meat.hpp | 70 -- RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/MapMat_bones.hpp | 44 - RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/MapMat_meat.hpp | 17 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/Mat_bones.hpp | 248 ++++---- RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/Mat_meat.hpp | 177 +---- RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/OpCube_bones.hpp | 6 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/OpCube_meat.hpp | 13 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/Op_bones.hpp | 2 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/Op_meat.hpp | 13 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/Row_bones.hpp | 56 - RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/Row_meat.hpp | 29 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/SpBase_bones.hpp | 56 - RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/SpBase_meat.hpp | 37 - RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/SpCol_bones.hpp | 6 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/SpCol_meat.hpp | 3 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/SpMat_bones.hpp | 227 +++---- RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/SpMat_iterators_meat.hpp | 34 - RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/SpMat_meat.hpp | 101 --- RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/SpRow_bones.hpp | 6 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/SpRow_meat.hpp | 3 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/SpSubview_bones.hpp | 84 +- RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/SpSubview_iterators_meat.hpp | 34 - RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/SpSubview_meat.hpp | 17 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/arma_config.hpp | 6 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/arma_forward.hpp | 4 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/arma_ostream_meat.hpp | 11 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/arma_rng.hpp | 208 +----- RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/arma_version.hpp | 8 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/arrayops_meat.hpp | 32 - RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/auxlib_bones.hpp | 4 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/auxlib_meat.hpp | 15 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/compiler_setup.hpp | 62 +- RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/config.hpp | 74 +- RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/constants_old.hpp | 20 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/csv_name.hpp | 58 + RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/debug.hpp | 90 -- RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/def_fftw3.hpp |only RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/diskio_bones.hpp | 28 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/diskio_meat.hpp | 302 ++++++---- RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/eglue_core_meat.hpp | 10 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/eop_core_meat.hpp | 18 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/fft_engine_fftw3.hpp |only RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/fft_engine_kissfft.hpp |only RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/field_bones.hpp | 76 +- RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/field_meat.hpp | 52 - RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/fill.hpp | 14 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_log_det.hpp | 4 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_log_normpdf.hpp | 12 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_norm.hpp | 12 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_normcdf.hpp | 12 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_normpdf.hpp | 12 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_reshape.hpp | 30 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_shift.hpp | 32 - RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/glue_solve_bones.hpp | 57 - RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/glue_solve_meat.hpp | 2 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/glue_times_meat.hpp | 15 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/gmm_diag_meat.hpp | 2 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/gmm_misc_bones.hpp | 38 - RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/gmm_misc_meat.hpp | 1 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/hdf5_misc.hpp | 224 +++---- RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/hdf5_name.hpp | 31 - RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/include_hdf5.hpp | 46 - RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/injector_meat.hpp | 19 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/memory.hpp | 4 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/mul_herk.hpp | 2 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_col_as_mat_bones.hpp |only RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_col_as_mat_meat.hpp |only RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_cond_meat.hpp | 2 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_det_meat.hpp | 3 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_dot_meat.hpp | 15 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_expmat_meat.hpp | 35 - RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_fft_bones.hpp | 8 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_fft_meat.hpp | 264 +++----- RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_htrans_meat.hpp | 6 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_inv_gen_bones.hpp | 36 - RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_inv_gen_meat.hpp | 30 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_inv_spd_bones.hpp | 5 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_inv_spd_meat.hpp | 24 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_log_det_meat.hpp | 4 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_logmat_meat.hpp | 6 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_max_meat.hpp | 108 +-- RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_mean_meat.hpp | 2 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_min_meat.hpp | 112 +-- RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_norm_meat.hpp | 12 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_pinv_meat.hpp | 4 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_powmat_meat.hpp | 2 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_rank_meat.hpp | 4 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_rcond_meat.hpp | 2 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_reshape_bones.hpp | 15 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_reshape_meat.hpp | 83 -- RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_row_as_mat_bones.hpp |only RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_row_as_mat_meat.hpp |only RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_shift_bones.hpp | 6 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_shift_meat.hpp | 70 -- RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_sqrtmat_meat.hpp | 6 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_strans_meat.hpp | 5 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/op_sum_meat.hpp | 8 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/podarray_bones.hpp | 6 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/podarray_meat.hpp | 123 ---- RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/running_stat_vec_meat.hpp | 2 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/sp_auxlib_meat.hpp | 37 - RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/spglue_merge_meat.hpp | 4 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/spglue_minus_meat.hpp | 3 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/spglue_plus_meat.hpp | 3 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/spglue_schur_meat.hpp | 3 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/spglue_times_meat.hpp | 1 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/spop_sum_meat.hpp | 1 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/subview_bones.hpp | 146 ++-- RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/subview_cube_bones.hpp | 36 - RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/subview_cube_each_meat.hpp | 1 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/subview_cube_meat.hpp | 16 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/subview_each_meat.hpp | 1 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/subview_meat.hpp | 72 -- RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/sym_helper.hpp |only RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/translate_fftw3.hpp |only RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/typedef_elem.hpp | 5 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/wall_clock_bones.hpp | 4 RcppArmadillo-0.12.0.1.0/RcppArmadillo/src/Makevars.in | 3 140 files changed, 1955 insertions(+), 3051 deletions(-)
Title: Kalman Filter
Description: 'Rcpp' implementation of the multivariate Kalman filter for state space models that can handle missing values and exogenous data in the observation and state equations.
Kim, Chang-Jin and Charles R. Nelson (1999) "State-Space Models with Regime Switching: Classical and Gibbs-Sampling Approaches with Applications" <doi:10.7551/mitpress/6444.001.0001><http://econ.korea.ac.kr/~cjkim/>.
Author: Alex Hubbard [aut, cre]
Maintainer: Alex Hubbard <hubbard.alex@gmail.com>
Diff between kalmanfilter versions 2.0.0 dated 2022-09-21 and 2.0.1 dated 2023-02-22
DESCRIPTION | 8 +- MD5 | 14 ++-- NEWS.md | 6 + inst/doc/kalmanfilter_vignette.html | 115 +++++++++++++++++------------------- man/sw_dcf.Rd | 4 - src/Makevars | 2 src/Makevars.win | 2 src/kalmanfilter.cpp | 7 +- 8 files changed, 83 insertions(+), 75 deletions(-)
Title: ExifTool Functionality from R
Description: Reads, writes, and edits EXIF and other file metadata
using ExifTool <https://exiftool.org/>, returning read results as
a data frame. ExifTool supports many different metadata formats
including EXIF, GPS, IPTC, XMP, JFIF, GeoTIFF, ICC Profile,
Photoshop IRB, FlashPix, AFCP and ID3, Lyrics3, as well as the
maker notes of many digital cameras by Canon, Casio, DJI, FLIR,
FujiFilm, GE, GoPro, HP, JVC/Victor, Kodak, Leaf,
Minolta/Konica-Minolta, Motorola, Nikon, Nintendo, Olympus/Epson,
Panasonic/Leica, Pentax/Asahi, Phase One, Reconyx, Ricoh, Samsung,
Sanyo, Sigma/Foveon and Sony.
Author: Joshua O'Brien [aut, cre]
Maintainer: Joshua O'Brien <joshmobrien@gmail.com>
Diff between exiftoolr versions 0.2.0 dated 2022-10-04 and 0.2.2 dated 2023-02-22
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 6 ++++++ R/exif_read.R | 7 +++++-- R/utils.R | 1 + 5 files changed, 21 insertions(+), 11 deletions(-)
Title: dbGaP Checkup
Description: Contains functions that check for formatting of the Subject Phenotype data set and data dictionary as specified by the National Center for Biotechnology Information (NCBI) Database of Genotypes and Phenotypes (dbGaP) <https://www.ncbi.nlm.nih.gov/gap/docs/submissionguide/>.
Author: Lacey W. Heinsberg [aut, cre],
Daniel E. Weeks [aut],
University of Pittsburgh [cph]
Maintainer: Lacey W. Heinsberg <law145@pitt.edu>
Diff between dbGaPCheckup versions 1.0.1 dated 2022-12-22 and 1.0.2 dated 2023-02-22
dbGaPCheckup-1.0.1/dbGaPCheckup/inst/extdata/3b_SSM_DD_Example1.xlsx |only dbGaPCheckup-1.0.1/dbGaPCheckup/inst/extdata/3b_SSM_DD_Example1b.xlsx |only dbGaPCheckup-1.0.1/dbGaPCheckup/inst/extdata/3b_SSM_DD_Example2.xlsx |only dbGaPCheckup-1.0.1/dbGaPCheckup/inst/extdata/3b_SSM_DD_Example2b.xlsx |only dbGaPCheckup-1.0.1/dbGaPCheckup/inst/extdata/3b_SSM_DD_Example2c.xlsx |only dbGaPCheckup-1.0.1/dbGaPCheckup/inst/extdata/3b_SSM_DD_Example2d.xlsx |only dbGaPCheckup-1.0.1/dbGaPCheckup/inst/extdata/3b_SSM_DD_Example2e.xlsx |only dbGaPCheckup-1.0.1/dbGaPCheckup/inst/extdata/3b_SSM_DD_Example2f.xlsx |only dbGaPCheckup-1.0.1/dbGaPCheckup/inst/extdata/3b_SSM_DD_Example4.xlsx |only dbGaPCheckup-1.0.1/dbGaPCheckup/inst/extdata/3b_SSM_DD_Example5.xlsx |only dbGaPCheckup-1.0.2/dbGaPCheckup/DESCRIPTION | 8 dbGaPCheckup-1.0.2/dbGaPCheckup/MD5 | 88 dbGaPCheckup-1.0.2/dbGaPCheckup/NEWS.md | 8 dbGaPCheckup-1.0.2/dbGaPCheckup/R/complete_check.R | 2 dbGaPCheckup-1.0.2/dbGaPCheckup/R/id_check.R | 32 dbGaPCheckup-1.0.2/dbGaPCheckup/R/misc_format_check.R | 87 dbGaPCheckup-1.0.2/dbGaPCheckup/R/name_correct.R | 4 dbGaPCheckup-1.0.2/dbGaPCheckup/R/row_check.R | 68 dbGaPCheckup-1.0.2/dbGaPCheckup/README.md | 12 dbGaPCheckup-1.0.2/dbGaPCheckup/inst/doc/dbGaPCheckup.R | 2 dbGaPCheckup-1.0.2/dbGaPCheckup/inst/doc/dbGaPCheckup.Rmd | 7 dbGaPCheckup-1.0.2/dbGaPCheckup/inst/doc/dbGaPCheckup.html | 173 - dbGaPCheckup-1.0.2/dbGaPCheckup/inst/doc/dbGaPCheckup_vignette.R | 27 dbGaPCheckup-1.0.2/dbGaPCheckup/inst/doc/dbGaPCheckup_vignette.Rmd | 84 dbGaPCheckup-1.0.2/dbGaPCheckup/inst/doc/dbGaPCheckup_vignette.html | 1072 +++++----- dbGaPCheckup-1.0.2/dbGaPCheckup/inst/extdata/DD_Example1.xlsx |only dbGaPCheckup-1.0.2/dbGaPCheckup/inst/extdata/DD_Example1b.xlsx |only dbGaPCheckup-1.0.2/dbGaPCheckup/inst/extdata/DD_Example2.xlsx |only dbGaPCheckup-1.0.2/dbGaPCheckup/inst/extdata/DD_Example2b.xlsx |only dbGaPCheckup-1.0.2/dbGaPCheckup/inst/extdata/DD_Example2c.xlsx |only dbGaPCheckup-1.0.2/dbGaPCheckup/inst/extdata/DD_Example2d.xlsx |only dbGaPCheckup-1.0.2/dbGaPCheckup/inst/extdata/DD_Example2e.xlsx |only dbGaPCheckup-1.0.2/dbGaPCheckup/inst/extdata/DD_Example2f.xlsx |only dbGaPCheckup-1.0.2/dbGaPCheckup/inst/extdata/DD_Example4.xlsx |only dbGaPCheckup-1.0.2/dbGaPCheckup/inst/extdata/DD_Example5.xlsx |only dbGaPCheckup-1.0.2/dbGaPCheckup/inst/extdata/DS_Example.txt | 200 - dbGaPCheckup-1.0.2/dbGaPCheckup/inst/extdata/DS_Example1b.txt | 200 - dbGaPCheckup-1.0.2/dbGaPCheckup/inst/extdata/DS_Example2.txt | 200 - dbGaPCheckup-1.0.2/dbGaPCheckup/inst/extdata/DS_Example2b.txt | 206 - dbGaPCheckup-1.0.2/dbGaPCheckup/inst/extdata/DS_Example2c.txt | 200 - dbGaPCheckup-1.0.2/dbGaPCheckup/inst/extdata/DS_Example3.txt | 200 - dbGaPCheckup-1.0.2/dbGaPCheckup/inst/extdata/DS_Example3b.txt | 200 - dbGaPCheckup-1.0.2/dbGaPCheckup/inst/extdata/DS_Example3c.txt | 200 - dbGaPCheckup-1.0.2/dbGaPCheckup/inst/extdata/DS_Example3d.txt | 200 - dbGaPCheckup-1.0.2/dbGaPCheckup/inst/extdata/DS_Example3e.txt | 200 - dbGaPCheckup-1.0.2/dbGaPCheckup/inst/extdata/DS_Example5.txt | 200 - dbGaPCheckup-1.0.2/dbGaPCheckup/inst/extdata/ExampleSources.R | 30 dbGaPCheckup-1.0.2/dbGaPCheckup/inst/extdata/Functions.xlsx |binary dbGaPCheckup-1.0.2/dbGaPCheckup/man/id_check.Rd | 4 dbGaPCheckup-1.0.2/dbGaPCheckup/man/minmax_check.Rd | 2 dbGaPCheckup-1.0.2/dbGaPCheckup/man/misc_format_check.Rd | 2 dbGaPCheckup-1.0.2/dbGaPCheckup/man/name_correct.Rd | 4 dbGaPCheckup-1.0.2/dbGaPCheckup/man/row_check.Rd | 14 dbGaPCheckup-1.0.2/dbGaPCheckup/vignettes/dbGaPCheckup.Rmd | 7 dbGaPCheckup-1.0.2/dbGaPCheckup/vignettes/dbGaPCheckup_vignette.Rmd | 84 55 files changed, 2143 insertions(+), 1884 deletions(-)
Title: Response Surface Designs with Neighbour Effects (rsdNE)
Description: Response surface designs with neighbour effects are suitable for experimental situations
where it is expected that the treatment combination administered to one experimental unit
may affect the response on neighboring units as well as the response on the unit to which it is applied.
Integrating these effects in the response surface model improves the experiment's precision
(Jaggi, S., Sarika and Sharma, V.K. (2010)<http://krishi.icar.gov.in/jspui/handle/123456789/4364>;
Verma A., Jaggi S., Varghese, E.,Varghese, C.,Bhowmik, A., Datta, A. and Hemavathi M. (2021)<DOI: 10.1080/03610918.2021.1890123>).
This package includes sym(), asym1(), asym2() functions that generates response surface designs which are rotatable under a
polynomial model of a given order without interaction term incorporating neighbour effects.
Author: Ashutosh Dalal [aut, cre],
Seema Jaggi [aut, ctb],
Eldho Varghese [aut, ctb],
Subhasish Sarkar [aut],
Arpan Bhowmik [aut],
Cini Varghese [aut],
Anindita Datta [aut],
Soumen Pal [aut]
Maintainer: Ashutosh Dalal <ashutosh.dalal97@gmail.com>
Diff between rsdNE versions 1.0.0 dated 2022-01-05 and 1.1.0 dated 2023-02-22
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/rsdNE.R | 56 +++++++++++++++++++++++++++++--------------------------- 3 files changed, 35 insertions(+), 33 deletions(-)
Title: Kim Filter
Description: 'Rcpp' implementation of the multivariate Kim filter, which combines the Kalman and Hamilton filters for state probability inference.
The filter is designed for state space models and can handle missing values and exogenous data in the observation and state equations.
Kim, Chang-Jin and Charles R. Nelson (1999) "State-Space Models with Regime Switching: Classical and Gibbs-Sampling Approaches with Applications" <doi:10.7551/mitpress/6444.001.0001><http://econ.korea.ac.kr/~cjkim/>.
Author: Alex Hubbard [aut, cre]
Maintainer: Alex Hubbard <hubbard.alex@gmail.com>
Diff between kimfilter versions 1.0.0 dated 2022-09-14 and 1.0.1 dated 2023-02-22
DESCRIPTION | 8 +- MD5 | 18 +++--- NEWS.md | 6 ++ R/data.R | 2 inst/doc/kimfilter_vignette.html | 115 +++++++++++++++++++-------------------- man/sw_dcf.Rd | 2 src/Makevars | 2 src/Makevars.win | 2 src/RcppExports.cpp | 4 - src/kimfilter.cpp | 8 +- 10 files changed, 87 insertions(+), 80 deletions(-)
Title: Multi-Scale Geomorphometric Terrain Attributes
Description: Calculates multi-scale geomorphometric terrain attributes from regularly gridded digital terrain models using a variable focal windows size (Misiuk et al. (2021) <doi:10.1080/01490419.2021.1925789>; Wilson et al. (2007) <doi:10.1080/01490410701295962>; Wood (1996) <https://hdl.handle.net/2381/34503>).
Author: Alexander Ilich [aut, cre] ,
Vincent Lecours [aut],
Benjamin Misiuk [aut],
Steven Murawski [aut]
Maintainer: Alexander Ilich <ailich@usf.edu>
Diff between MultiscaleDTM versions 0.5.5 dated 2023-01-30 and 0.6.0 dated 2023-02-22
MultiscaleDTM-0.5.5/MultiscaleDTM/R/RDMV.R |only MultiscaleDTM-0.5.5/MultiscaleDTM/man/RDMV.Rd |only MultiscaleDTM-0.5.5/MultiscaleDTM/man/figures/BPI_Fig.png |only MultiscaleDTM-0.5.5/MultiscaleDTM/man/figures/adj_sd_orig.png |only MultiscaleDTM-0.6.0/MultiscaleDTM/DESCRIPTION | 6 MultiscaleDTM-0.6.0/MultiscaleDTM/MD5 | 40 +- MultiscaleDTM-0.6.0/MultiscaleDTM/NAMESPACE | 53 +-- MultiscaleDTM-0.6.0/MultiscaleDTM/R/BPI.R | 149 +--------- MultiscaleDTM-0.6.0/MultiscaleDTM/R/DMV.R |only MultiscaleDTM-0.6.0/MultiscaleDTM/R/RelPos.R |only MultiscaleDTM-0.6.0/MultiscaleDTM/R/TPI.R | 55 +-- MultiscaleDTM-0.6.0/MultiscaleDTM/README.md | 146 ++++++--- MultiscaleDTM-0.6.0/MultiscaleDTM/inst/CITATION | 2 MultiscaleDTM-0.6.0/MultiscaleDTM/man/BPI.Rd | 28 - MultiscaleDTM-0.6.0/MultiscaleDTM/man/DMV.Rd |only MultiscaleDTM-0.6.0/MultiscaleDTM/man/RelPos.Rd |only MultiscaleDTM-0.6.0/MultiscaleDTM/man/TPI.Rd | 33 +- MultiscaleDTM-0.6.0/MultiscaleDTM/man/annulus_window.Rd | 44 +- MultiscaleDTM-0.6.0/MultiscaleDTM/man/circle_window.Rd | 46 +-- MultiscaleDTM-0.6.0/MultiscaleDTM/man/figures/README-unnamed-chunk-18-1.png |binary MultiscaleDTM-0.6.0/MultiscaleDTM/man/figures/README-unnamed-chunk-20-1.png |binary MultiscaleDTM-0.6.0/MultiscaleDTM/man/figures/README-unnamed-chunk-22-1.png |binary MultiscaleDTM-0.6.0/MultiscaleDTM/man/figures/README-unnamed-chunk-24-1.png |only MultiscaleDTM-0.6.0/MultiscaleDTM/man/figures/README-unnamed-chunk-8-1.png |binary MultiscaleDTM-0.6.0/MultiscaleDTM/man/figures/WindowShapes.png |only MultiscaleDTM-0.6.0/MultiscaleDTM/man/figures/adj_sd.png |binary 26 files changed, 278 insertions(+), 324 deletions(-)
Title: Sample Size Estimation Functions for Cluster Randomized Trials
Description: Sample size estimation in cluster (group) randomized trials. Contains traditional power-based methods, empirical smoothing (Rotondi and Donner, 2009), and updated meta-analysis techniques (Rotondi and Donner, 2012).
Author: Michael A Rotondi <mrotondi@yorku.ca>
Maintainer: Michael A Rotondi <mrotondi@yorku.ca>
Diff between CRTSize versions 1.1 dated 2022-10-12 and 1.2 dated 2023-02-22
CRTSize-1.1/CRTSize/R/FixedmetaAnalMD.R |only CRTSize-1.1/CRTSize/R/FixedmetaAnalRROR.R |only CRTSize-1.1/CRTSize/man/fixedMetaAnalMD.Rd |only CRTSize-1.1/CRTSize/man/fixedMetaAnalRROR.Rd |only CRTSize-1.2/CRTSize/DESCRIPTION | 8 - CRTSize-1.2/CRTSize/MD5 | 16 +-- CRTSize-1.2/CRTSize/NAMESPACE | 4 CRTSize-1.2/CRTSize/R/n4meansMeta.R | 105 ++++++++++++++++++--- CRTSize-1.2/CRTSize/R/n4propsMeta.R | 132 +++++++++++++++++++++++---- CRTSize-1.2/CRTSize/man/n4meansMeta.Rd | 37 +++---- CRTSize-1.2/CRTSize/man/n4propsMeta.Rd | 45 ++++----- 11 files changed, 256 insertions(+), 91 deletions(-)
Title: Privacy-Preserving Distributed Algorithms
Description: A collection of privacy-preserving distributed algorithms for conducting multi-site data analyses. The regression analyses can be linear regression for continuous outcome, logistic regression for binary outcome, Cox proportional hazard regression for time-to event outcome, Poisson regression for count outcome, or multi-categorical regression for nominal or ordinal outcome. The PDA algorithm runs on a lead site and only requires summary statistics from collaborating sites, with one or few iterations. The package can be used together with the online system (<https://pda-ota.pdamethods.org/>) for safe and convenient collaboration. For more information, please visit our software websites: <https://github.com/Penncil/pda>, and <https://pdamethods.org/>.
Author: Chongliang Luo [aut],
Rui Duan [aut],
Mackenzie Edmondson [aut],
Jiayi Tong [aut],
Xiaokang Liu [aut],
Kenneth Locke [aut],
Jiajie Chen [cre],
Yong Chen [aut],
Penn Computing Inference Learning lab [cph]
Maintainer: Jiajie Chen <jiajie.chen@pennmedicine.upenn.edu>
Diff between pda versions 1.0-2 dated 2020-12-10 and 1.2.5 dated 2023-02-22
pda-1.0-2/pda/man/ODAC.derive_UWZ.Rd |only pda-1.2.5/pda/DESCRIPTION | 31 pda-1.2.5/pda/MD5 | 85 +- pda-1.2.5/pda/NAMESPACE | 3 pda-1.2.5/pda/R/ADAP.R |only pda-1.2.5/pda/R/DLM.R |only pda-1.2.5/pda/R/DPQL.R |only pda-1.2.5/pda/R/ODAC.R | 587 ++++++++-------- pda-1.2.5/pda/R/ODACAT.R |only pda-1.2.5/pda/R/ODAH.R | 8 pda-1.2.5/pda/R/ODAL.R | 27 pda-1.2.5/pda/R/ODAPB.R |only pda-1.2.5/pda/R/RcppExports.R | 62 - pda-1.2.5/pda/R/dGEM.R |only pda-1.2.5/pda/R/data.R |only pda-1.2.5/pda/R/dlmm.R |only pda-1.2.5/pda/R/odacat-misc.R |only pda-1.2.5/pda/R/pda.R | 1189 +++++++++++++++++++-------------- pda-1.2.5/pda/build/partial.rdb |only pda-1.2.5/pda/data |only pda-1.2.5/pda/demo/00Index | 6 pda-1.2.5/pda/demo/ADAP.R |only pda-1.2.5/pda/demo/DLM.R |only pda-1.2.5/pda/demo/DPQL.R |only pda-1.2.5/pda/demo/ODAC.R | 19 pda-1.2.5/pda/demo/ODACAT.R |only pda-1.2.5/pda/demo/ODACH.R |only pda-1.2.5/pda/demo/ODAH.R | 30 pda-1.2.5/pda/demo/ODAL.R | 16 pda-1.2.5/pda/demo/dGEM.R |only pda-1.2.5/pda/man/ADAP.derive.Rd |only pda-1.2.5/pda/man/ADAP.estimate.Rd |only pda-1.2.5/pda/man/ADAP.initialize.Rd |only pda-1.2.5/pda/man/ADAP_data.Rd |only pda-1.2.5/pda/man/DLM.estimate.Rd |only pda-1.2.5/pda/man/DLM.initialize.Rd |only pda-1.2.5/pda/man/DPQL.derive.Rd |only pda-1.2.5/pda/man/DPQL.estimate.Rd |only pda-1.2.5/pda/man/DPQL.initialize.Rd |only pda-1.2.5/pda/man/LOS.Rd |only pda-1.2.5/pda/man/ODAC.derive.Rd | 9 pda-1.2.5/pda/man/ODAC.deriveUWZ.Rd |only pda-1.2.5/pda/man/ODAC.initialize.Rd | 2 pda-1.2.5/pda/man/ODACAT.derive.Rd |only pda-1.2.5/pda/man/ODACAT.estimate.Rd |only pda-1.2.5/pda/man/ODACAT.initialize.Rd |only pda-1.2.5/pda/man/ODACAT_nominal.Rd |only pda-1.2.5/pda/man/ODACAT_ordinal.Rd |only pda-1.2.5/pda/man/ODAPB.derive.Rd |only pda-1.2.5/pda/man/ODAPB.estimate.Rd |only pda-1.2.5/pda/man/ODAPB.initialize.Rd |only pda-1.2.5/pda/man/covid.Rd |only pda-1.2.5/pda/man/cs.Rd |only pda-1.2.5/pda/man/dGEM.derive.Rd |only pda-1.2.5/pda/man/dGEM.estimate.Rd |only pda-1.2.5/pda/man/dGEM.initialize.Rd |only pda-1.2.5/pda/man/dGEM.synthesize.Rd |only pda-1.2.5/pda/man/lung2.Rd |only pda-1.2.5/pda/man/myglmmPQL.Rd |only pda-1.2.5/pda/man/pda.Rd | 23 pda-1.2.5/pda/src/Makevars | 3 pda-1.2.5/pda/src/Makevars.win | 3 pda-1.2.5/pda/src/RcppExports.cpp | 5 63 files changed, 1247 insertions(+), 861 deletions(-)
Title: Mixture and Composite Distributions
Description: A flexible computational framework for mixture distributions with the focus on the composite models.
Author: Lukas Sablica [aut, cre] ,
Kurt Hornik [aut]
Maintainer: Lukas Sablica <lsablica@wu.ac.at>
Diff between mistr versions 0.0.5 dated 2021-12-18 and 0.0.6 dated 2023-02-22
DESCRIPTION | 9 +++++---- MD5 | 14 +++++++------- NEWS.md | 6 ++++++ build/vignette.rds |binary inst/CITATION | 11 +++++++---- inst/doc/mistr-extensions.pdf |binary inst/doc/mistr-introduction.pdf |binary man/stocks.Rd | 6 ++++-- 8 files changed, 29 insertions(+), 17 deletions(-)
Title: 1d Water Level Interpolation along the Rivers Elbe and Rhine
Description: An S4 class and several functions which utilize internally stored
datasets and gauging data enable 1d water level interpolation. The S4 class
(WaterLevelDataFrame) structures the computation and visualisation
of 1d water level information along the German federal waterways Elbe and
Rhine. 'hyd1d' delivers 1d water level data - extracted from the 'FLYS'
database - and validated gauging data - extracted from the hydrological
database 'HyDaBa' - package-internally. For computations near real time
gauging data are queried externally from the 'PEGELONLINE REST API'
<https://pegelonline.wsv.de/webservice/dokuRestapi>.
Author: Arnd Weber [aut, cre] ,
Marcus Hatz [aut],
Wolfgang Stuermer [ctb],
Wilfried Wiechmann [ctb]
Maintainer: Arnd Weber <arnd.weber@bafg.de>
Diff between hyd1d versions 0.4.1 dated 2023-01-09 and 0.4.2 dated 2023-02-22
DESCRIPTION | 11 MD5 | 67 +-- NEWS.md |only R/Class-WaterLevelDataFrame.R | 8 R/data.R | 4 R/hyd1d.R | 11 R/waterLevel.R | 6 R/waterLevelFlood1.R | 4 R/waterLevelFlood2.R | 6 R/waterLevelFlys3.R | 4 R/waterLevelFlys3InterpolateX.R | 2 R/waterLevelFlys3InterpolateY.R | 4 R/zzz.R | 31 + README.md | 22 + build/partial.rdb |binary inst/CITATION | 40 +- inst/doc/hyd1d.R | 3 inst/doc/hyd1d.Rmd | 10 inst/doc/hyd1d.html | 656 ++++++++++++++++++------------------- inst/doc/vignette_DE.R | 3 inst/doc/vignette_DE.Rmd | 10 inst/doc/vignette_DE.html | 626 +++++++++++++++++------------------ man/WaterLevelDataFrame-class.Rd | 6 man/WaterLevelDataFrame.Rd | 2 man/df.flys.Rd | 4 man/figures/README-usage-1.png |only man/hyd1d.Rd | 11 man/waterLevel.Rd | 6 man/waterLevelFlood1.Rd | 4 man/waterLevelFlood2.Rd | 6 man/waterLevelFlys3.Rd | 4 man/waterLevelFlys3InterpolateX.Rd | 2 man/waterLevelFlys3InterpolateY.Rd | 4 vignettes/hyd1d.Rmd | 10 vignettes/paper_median_slope.R |only vignettes/vignette_DE.Rmd | 10 36 files changed, 830 insertions(+), 767 deletions(-)
Title: Simulation-Based Inference for Regression Models
Description: Performs simulation-based inference as an alternative to the delta method for obtaining valid confidence intervals and p-values for regression post-estimation quantities, such as average marginal effects and predictions at representative values. This framework for simulation-based inference is especially useful when the resulting quantity is not normally distributed and the delta method approximation fails. The methodology is described in King, Tomz, and Wittenberg (2000) <doi:10.2307/2669316>. 'clarify' is meant to replace some of the functionality of the archived package 'Zelig'; see the vignette "Translating Zelig to clarify" for replicating this functionality.
Author: Noah Greifer [aut, cre] ,
Steven Worthington [aut] ,
Stefano Iacus [aut] ,
Gary King [aut]
Maintainer: Noah Greifer <ngreifer@iq.harvard.edu>
Diff between clarify versions 0.1.1 dated 2023-02-03 and 0.1.2 dated 2023-02-22
DESCRIPTION | 10 +-- MD5 | 48 +++++++++--------- NEWS.md | 8 +++ R/plot.clarify_est.R | 100 ++++++++++++++++++++++++++++++++++++-- R/plot.clarify_setx.R | 30 +++++++---- R/sim.R | 5 + R/sim_adrf.R | 4 - R/sim_ame.R | 6 +- R/sim_setx.R | 4 - R/summary.clarify_est.R | 13 +++- R/utils.R | 17 ++++-- README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/Zelig.html | 8 +-- inst/doc/clarify.R | 29 ++++++----- inst/doc/clarify.Rmd | 35 +++++++------ inst/doc/clarify.html | 99 ++++++++++++------------------------- man/figures/README-example2-1.png |binary man/plot.clarify_setx.Rd | 12 ++++ man/sim.Rd | 5 + man/summary.clarify_est.Rd | 24 +++++++-- tests/testthat/test-sim.R | 3 - tests/testthat/test-sim_ame.R | 20 +++++++ vignettes/clarify.Rmd | 35 +++++++------ 25 files changed, 334 insertions(+), 183 deletions(-)
Title: Pivotal Methods for Bayesian Relabelling and k-Means Clustering
Description: Collection of pivotal algorithms
for: relabelling the MCMC chains in order to undo the label
switching problem in Bayesian mixture models;
fitting sparse finite mixtures;
initializing the centers of the classical k-means algorithm
in order to obtain a better clustering solution.
For further details see
Egidi, Pappadà, Pauli and Torelli (2018b)<ISBN:9788891910233>.
Author: Leonardo Egidi[aut, cre],
Roberta Pappada[aut],
Francesco Pauli[aut],
Nicola Torelli[aut]
Maintainer: Leonardo Egidi <legidi@units.it>
Diff between pivmet versions 0.4.0 dated 2021-04-30 and 0.5.0 dated 2023-02-22
DESCRIPTION | 19 MD5 | 30 NAMESPACE | 1 NEWS.md | 5 R/bayes_mcmc.R | 290 +++- R/plot.R | 39 build/vignette.rds |binary inst/doc/K-means_clustering_using_the_MUS_algorithm.html | 337 +--- inst/doc/Relabelling_in_Bayesian_mixtures_by_pivotal_units.R | 8 inst/doc/Relabelling_in_Bayesian_mixtures_by_pivotal_units.Rmd | 17 inst/doc/Relabelling_in_Bayesian_mixtures_by_pivotal_units.html | 677 ++++------ man/figures/README-kmeans_plots-1.png |binary man/figures/README-musk-1.png |binary man/piv_MCMC.Rd | 5 vignettes/Relabelling_in_Bayesian_mixtures_by_pivotal_units.Rmd | 17 vignettes/ref.bib | 165 +- 16 files changed, 825 insertions(+), 785 deletions(-)
Title: Functions to Replicate the Center for Disease Control and
Prevention's 'LTAS' Software in R
Description: A suite of functions for reading in a rate file in XML format,
stratify a cohort, and calculate 'SMRs' from the stratified cohort and rate file.
Author: Stephen Bertke [aut, cre]
Maintainer: Stephen Bertke <nioshltas@cdc.gov>
Diff between LTASR versions 0.1.0 dated 2022-10-21 and 0.1.1 dated 2023-02-22
DESCRIPTION | 10 +-- MD5 | 31 +++++---- NEWS.md | 5 + R/checkPerson.R | 23 ++++++- R/get_table_history.R | 2 R/get_table_history_est.R | 2 R/parseRate.R | 66 ++++++++++---------- R/zzz.R |only inst/doc/BasicStrata.html | 14 ++-- inst/doc/HistFile.html | 124 ++++++++++++++++++++------------------- inst/doc/SMRbyStrata.R | 11 +++ inst/doc/SMRbyStrata.Rmd | 11 +++ inst/doc/SMRbyStrata.html | 136 +++++++++++++++++++++++-------------------- man/get_table_history.Rd | 3 man/get_table_history_est.Rd | 3 man/parseRate.Rd | 4 - vignettes/SMRbyStrata.Rmd | 11 +++ 17 files changed, 261 insertions(+), 195 deletions(-)
Title: Non-Targeted Fluxomics on High-Resolution Mass-Spectrometry Data
Description: Identifying labeled compounds in a 13C-tracer experiment in
non-targeted fashion is a cumbersome process. This package facilitates
such type of analyses by providing high level quality control plots,
deconvoluting and evaluating spectra and performing a multitude of
tests in an automatic fashion. The main idea is to use changing
intensity ratios of ion pairs from peak list generated with 'xcms' as
candidates and evaluate those against base peak chromatograms and
spectra information within the raw measurement data automatically.
The functionality is described in Hoffmann et al. (2018)
<doi:10.1021/acs.analchem.8b00356>.
Author: Jan Lisec [aut, cre],
Friederike Hoffmann [aut]
Maintainer: Jan Lisec <jan.lisec@bam.de>
Diff between HiResTEC versions 0.59 dated 2019-06-18 and 0.62 dated 2023-02-22
HiResTEC-0.59/HiResTEC/R/CalcMID.R |only HiResTEC-0.59/HiResTEC/R/CalcTheoreticalMDV.R |only HiResTEC-0.59/HiResTEC/R/mz_shift_corrector-data.R |only HiResTEC-0.59/HiResTEC/R/res_list-data.R |only HiResTEC-0.59/HiResTEC/R/sam-data.R |only HiResTEC-0.59/HiResTEC/R/xcms_cand-data.R |only HiResTEC-0.59/HiResTEC/man/CalcEnrichment.Rd |only HiResTEC-0.59/HiResTEC/man/CalcMID.Rd |only HiResTEC-0.59/HiResTEC/man/CandidateBoxplot.Rd |only HiResTEC-0.59/HiResTEC/man/DetermineElementComposition.Rd |only HiResTEC-0.59/HiResTEC/man/EvaluateCandidate.Rd |only HiResTEC-0.59/HiResTEC/man/EvaluateMassTargetedForFlux.Rd |only HiResTEC-0.59/HiResTEC/man/EvaluateSpectrum.Rd |only HiResTEC-0.59/HiResTEC/man/ExportHeuristicsTable.Rd |only HiResTEC-0.59/HiResTEC/man/RankCandidateList.Rd |only HiResTEC-0.59/HiResTEC/man/groupval.Rd |only HiResTEC-0.62/HiResTEC/DESCRIPTION | 41 +- HiResTEC-0.62/HiResTEC/MD5 | 87 +--- HiResTEC-0.62/HiResTEC/NAMESPACE | 8 HiResTEC-0.62/HiResTEC/R/CalcEnrichment.R | 45 +- HiResTEC-0.62/HiResTEC/R/CandidateBoxplot.R | 84 ++-- HiResTEC-0.62/HiResTEC/R/CorMID_reexport.R |only HiResTEC-0.62/HiResTEC/R/DeconvoluteSpectrum.R | 186 +++++---- HiResTEC-0.62/HiResTEC/R/DetermineElementComposition.R | 44 +- HiResTEC-0.62/HiResTEC/R/EvaluateCandidate.R | 165 ++++---- HiResTEC-0.62/HiResTEC/R/EvaluateCandidateListAgainstRawData.R | 127 +++--- HiResTEC-0.62/HiResTEC/R/EvaluateMassTargetedForFlux.R | 87 ++-- HiResTEC-0.62/HiResTEC/R/EvaluatePairsFromXCMSSet.R | 168 ++++---- HiResTEC-0.62/HiResTEC/R/EvaluateSpectrum.R | 54 +- HiResTEC-0.62/HiResTEC/R/ExportHeuristicsTable.R | 167 +++++--- HiResTEC-0.62/HiResTEC/R/GenerateCandXLSX.R | 75 ++- HiResTEC-0.62/HiResTEC/R/GenerateQCPlots.R | 100 ++--- HiResTEC-0.62/HiResTEC/R/HiResTEC-data.R |only HiResTEC-0.62/HiResTEC/R/RankCandidateList.R | 50 +- HiResTEC-0.62/HiResTEC/R/getMultipleBPC.R | 125 +++--- HiResTEC-0.62/HiResTEC/R/groupval.R | 27 - HiResTEC-0.62/HiResTEC/R/plotBPC.R | 189 +++++----- HiResTEC-0.62/HiResTEC/R/plotMID.R | 167 +++++--- HiResTEC-0.62/HiResTEC/inst/CITATION | 24 - HiResTEC-0.62/HiResTEC/man/CalcTheoreticalMDV.Rd | 46 -- HiResTEC-0.62/HiResTEC/man/CorMID.Rd |only HiResTEC-0.62/HiResTEC/man/DeconvoluteSpectrum.Rd | 13 HiResTEC-0.62/HiResTEC/man/EvaluateCandidateListAgainstRawData.Rd | 18 HiResTEC-0.62/HiResTEC/man/EvaluatePairsFromXCMSSet.Rd | 26 + HiResTEC-0.62/HiResTEC/man/GenerateCandXLSX.Rd | 6 HiResTEC-0.62/HiResTEC/man/GenerateQCPlots.Rd | 12 HiResTEC-0.62/HiResTEC/man/getMultipleBPC.Rd | 28 + HiResTEC-0.62/HiResTEC/man/mz_shift_corrector.Rd | 14 HiResTEC-0.62/HiResTEC/man/plotBPC.Rd | 15 HiResTEC-0.62/HiResTEC/man/plotMID.Rd | 33 + HiResTEC-0.62/HiResTEC/man/res_list.Rd | 14 HiResTEC-0.62/HiResTEC/man/sam.Rd | 14 HiResTEC-0.62/HiResTEC/man/xcms_cand.Rd | 14 HiResTEC-0.62/HiResTEC/src/getBPC_C.c | 2 54 files changed, 1227 insertions(+), 1048 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-03-30 0.1.4
2021-10-24 0.1.3
Title: Observed Fisher Information Matrix for Finite Mixture Model
Description: Developed for the following tasks. 1- simulating realizations from the canonical,
restricted, and unrestricted finite mixture models. 2- Monte Carlo approximation for
density function of the finite mixture models. 3- Monte Carlo approximation for the
observed Fisher information matrix, asymptotic standard error, and the corresponding
confidence intervals for parameters of the mixture models sing the method proposed by
Basford et al. (1997) <https://espace.library.uq.edu.au/view/UQ:57525>.
Author: Mahdi Teimouri [aut, cre, cph, ctb]
Maintainer: Mahdi Teimouri <teimouri@aut.ac.ir>
Diff between mixbox versions 1.1.1 dated 2023-01-23 and 1.2.2 dated 2023-02-22
mixbox-1.1.1/mixbox/data/iris.txt.gz |only mixbox-1.1.1/mixbox/man/iris.Rd |only mixbox-1.2.2/mixbox/DESCRIPTION | 16 - mixbox-1.2.2/mixbox/MD5 | 50 ++-- mixbox-1.2.2/mixbox/R/arrange_lambda.R | 4 mixbox-1.2.2/mixbox/R/arrange_sigma.R | 4 mixbox-1.2.2/mixbox/R/configuration1.R | 9 mixbox-1.2.2/mixbox/R/configuration2.R | 6 mixbox-1.2.2/mixbox/R/dmix.R | 171 ++++++++-------- mixbox-1.2.2/mixbox/R/estep1.R | 288 +++++++++++++-------------- mixbox-1.2.2/mixbox/R/estep2.R | 311 +++++++++++++++--------------- mixbox-1.2.2/mixbox/R/ofim1.R | 38 +-- mixbox-1.2.2/mixbox/R/ofim2.R | 44 ++-- mixbox-1.2.2/mixbox/R/ofim_name.R |only mixbox-1.2.2/mixbox/R/rigaussian.R | 8 mixbox-1.2.2/mixbox/R/rmix.R | 10 mixbox-1.2.2/mixbox/R/sefm.R | 45 ++-- mixbox-1.2.2/mixbox/build/partial.rdb |binary mixbox-1.2.2/mixbox/man/configuration1.Rd | 10 mixbox-1.2.2/mixbox/man/configuration2.Rd | 13 - mixbox-1.2.2/mixbox/man/dmix.Rd | 25 +- mixbox-1.2.2/mixbox/man/estep1.Rd | 20 + mixbox-1.2.2/mixbox/man/estep2.Rd | 13 - mixbox-1.2.2/mixbox/man/ofim1.Rd | 16 - mixbox-1.2.2/mixbox/man/ofim2.Rd | 20 - mixbox-1.2.2/mixbox/man/ofim_name.Rd |only mixbox-1.2.2/mixbox/man/rmix.Rd | 26 +- mixbox-1.2.2/mixbox/man/sefm.Rd | 112 +++++----- 28 files changed, 652 insertions(+), 607 deletions(-)
Title: Statistical Methods for Anthropometric Data
Description: Statistical methodologies especially developed to analyze anthropometric data. These methods are aimed at providing effective solutions to some commons problems related to Ergonomics and Anthropometry. They are based on clustering, the statistical concept of data depth, statistical shape analysis and archetypal analysis. Please see Vinue (2017) <doi:10.18637/jss.v077.i06>.
Author: Guillermo Vinue, Irene Epifanio, Amelia Simo, M. Victoria Ibanez, Juan Domingo, Guillermo Ayala
Maintainer: Guillermo Vinue <Guillermo.Vinue@uv.es>
Diff between Anthropometry versions 1.18 dated 2023-01-13 and 1.19 dated 2023-02-22
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NAMESPACE | 2 +- NEWS | 5 +++++ R/preprocessing.R | 4 ++-- build/partial.rdb |binary inst/doc/Anthropometry.pdf |binary man/Anthropometry-package.Rd | 4 ++-- 8 files changed, 22 insertions(+), 17 deletions(-)
Title: Modeling Workflows
Description: Managing both a 'parsnip' model and a preprocessor, such as a
model formula or recipe from 'recipes', can often be challenging. The
goal of 'workflows' is to streamline this process by bundling the
model alongside the preprocessor, all within the same object.
Author: Davis Vaughan [aut],
Simon Couch [aut, cre] ,
RStudio [cph, fnd]
Maintainer: Simon Couch <simonpatrickcouch@gmail.com>
Diff between workflows versions 1.1.2 dated 2022-11-16 and 1.1.3 dated 2023-02-22
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NAMESPACE | 4 ++++ NEWS.md | 7 ++++++- R/generics.R | 8 ++++---- R/workflows-package.R | 2 ++ R/zzz.R | 38 -------------------------------------- build/vignette.rds |binary inst/doc/stages.html | 14 +++++++------- man/predict-workflow.Rd | 33 +++++++++++++++++---------------- tests/testthat/test-extract.R | 6 ------ 11 files changed, 54 insertions(+), 86 deletions(-)
Title: Easily Install and Load the 'Tidyverse'
Description: The 'tidyverse' is a set of packages that work in harmony
because they share common data representations and 'API' design. This
package is designed to make it easy to install and load multiple
'tidyverse' packages in a single step. Learn more about the
'tidyverse' at <https://www.tidyverse.org>.
Author: Hadley Wickham [aut, cre],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between tidyverse versions 1.3.2 dated 2022-07-18 and 2.0.0 dated 2023-02-22
DESCRIPTION | 33 ++++---- MD5 | 50 ++++++------ NAMESPACE | 21 ----- NEWS.md | 13 +++ R/attach.R | 62 ++++++++------- R/conflicts.R | 44 ++++++++-- R/logo.R | 8 - R/tidyverse.R | 51 ++++++------ R/update.R | 6 - R/utils.R | 23 +---- R/zzz.R | 20 ++-- README.md | 105 ++++++++++++++----------- build/vignette.rds |binary inst/doc/manifesto.Rmd | 2 inst/doc/manifesto.html | 21 ++--- inst/doc/paper.Rmd | 2 inst/doc/paper.html | 162 ++++++++++++++++++++-------------------- man/tidyverse_conflicts.Rd | 6 + man/tidyverse_logo.Rd | 4 tests/testthat.R | 8 + tests/testthat/_snaps |only tests/testthat/test-attach.R |only tests/testthat/test-conflicts.R |only tests/testthat/test-logo.R |only tests/testthat/test-utils.R | 2 vignettes/manifesto.Rmd | 2 vignettes/paper.Rmd | 2 27 files changed, 357 insertions(+), 290 deletions(-)
Title: Quick Serialization of R Objects
Description: Provides functions for quickly writing and reading any R object to and from disk.
Author: Travers Ching [aut, cre, cph],
Yann Collet [ctb, cph] ,
Facebook, Inc. [cph] ,
Reichardt Tino [ctb, cph] ,
Skibinski Przemyslaw [ctb, cph] ,
Mori Yuta [ctb, cph] ,
Romain Francois [ctb, cph] ,
Francesc Alted [ctb, cph] ,
Bryce Chamberlain [ctb] ,
Sal [...truncated...]
Maintainer: Travers Ching <traversc@gmail.com>
Diff between qs versions 0.25.4 dated 2022-08-09 and 0.25.5 dated 2023-02-22
ChangeLog | 10 DESCRIPTION | 9 MD5 | 54 +-- NAMESPACE | 2 R/RcppExports.R | 4 R/ascii_encoding.R | 14 R/qread_url.R |only R/zz_help_files.R | 56 +++ R/zzz.R | 2 build/vignette.rds |binary data/starnames.rda |binary inst/doc/vignette.html | 2 inst/extra_tests/benchmark_testing_between_versions.R | 70 ---- inst/extra_tests/correctness_testing_extended.R | 26 - inst/extra_tests/regression_testing.R | 212 ++++-------- inst/include/qs_RcppExports.h | 20 + man/base91_encode.Rd | 4 man/qattributes.Rd |only man/qread_url.Rd |only src/Makevars.in | 3 src/Makevars.win | 5 src/RcppExports.cpp | 39 ++ src/qs_deserialization.h | 34 + src/qs_deserialization_stream.h | 46 +- src/qs_deserialize_common.h | 308 +++++++++++++----- src/qs_functions.cpp | 103 ++++-- src/qs_mt_deserialization.h | 52 +-- tests/correctness_testing.R | 7 tests/qattributes_testing.R |only tests/qsavemload_testing.R | 36 +- 30 files changed, 717 insertions(+), 401 deletions(-)
Title: Alluvial Plots in 'ggplot2'
Description: Alluvial plots use variable-width ribbons and stacked bar plots to
represent multi-dimensional or repeated-measures data with categorical or
ordinal variables; see Riehmann, Hanfler, and Froehlich (2005)
<doi:10.1109/INFVIS.2005.1532152> and Rosvall and Bergstrom (2010)
<doi:10.1371/journal.pone.0008694>.
Alluvial plots are statistical graphics in the sense of Wilkinson (2006)
<doi:10.1007/0-387-28695-0>; they share elements with Sankey diagrams and
parallel sets plots but are uniquely determined from the data and a small
set of parameters. This package extends Wickham's (2010)
<doi:10.1198/jcgs.2009.07098> layered grammar of graphics to generate
alluvial plots from tidy data.
Author: Jason Cory Brunson [aut, cre],
Quentin D. Read [aut]
Maintainer: Jason Cory Brunson <cornelioid@gmail.com>
Diff between ggalluvial versions 0.12.4 dated 2023-02-03 and 0.12.5 dated 2023-02-22
DESCRIPTION | 6 ++--- MD5 | 30 +++++++++++++------------- NEWS.md | 4 +++ R/alluvial-data.r | 10 +++++--- R/stat-alluvium.r | 2 - R/stat-flow.r | 2 - R/stat-stratum.r | 45 ++++++++++++++++++--------------------- R/stat-utils.r | 12 +++++++++- R/utils.r | 2 - inst/doc/ggalluvial.html | 12 +++++----- inst/doc/labels.html | 18 +++++++-------- inst/doc/order-rectangles.html | 14 ++++++------ inst/doc/shiny.html | 4 +-- man/stat_alluvium.Rd | 35 +++++++++++++----------------- man/stat_flow.Rd | 35 +++++++++++++----------------- man/stat_stratum.Rd | 47 +++++++++++++++++++---------------------- 16 files changed, 140 insertions(+), 138 deletions(-)
Title: Interface to the California Data Exchange Center (CDEC)
Description: Connect to the California Data Exchange Center (CDEC)
Web Service <http://cdec.water.ca.gov/>. 'CDEC' provides a centralized
database to store, process, and exchange real-time hydrologic information
gathered by various cooperators throughout California. The 'CDEC' Web Service
<http://cdec.water.ca.gov/dynamicapp/wsSensorData> provides a data download
service for accessing historical records.
Author: Michael Koohafkan [aut, cre]
Maintainer: Michael Koohafkan <michael.koohafkan@gmail.com>
Diff between cder versions 0.3-0 dated 2023-02-12 and 0.3-1 dated 2023-02-22
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 16 +++++++++++----- tests/testthat/test-list.R | 2 +- tests/testthat/test-query.R | 4 +++- tests/testthat/test-urls.R | 2 +- 6 files changed, 24 insertions(+), 16 deletions(-)
Title: Extend 'tinytest' with 'diffobj'
Description: The 'tinytest' package offers a light-weight zero-dependency unit-testing
framework to which this package adds support of the 'diffobj' package for 'diff'-style
comparison of R objects.
Author: Dirk Eddelbuettel and Alton Barbehenn
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between ttdo versions 0.0.8 dated 2021-07-17 and 0.0.9 dated 2023-02-22
ChangeLog | 14 ++++++++++++++ DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ R/expectations_xl.R | 2 ++ README.md | 1 - inst/NEWS.Rd | 8 ++++++++ man/ttdo_boolean_and_message_tests.Rd | 5 +++++ 7 files changed, 40 insertions(+), 12 deletions(-)
Title: Predictions, Comparisons, Slopes, Marginal Means, and Hypothesis
Tests
Description: Compute and plot predictions, slopes, marginal means, and comparisons (contrasts, risk ratios, odds, etc.) for over 70 classes of statistical models in R. Conduct linear and non-linear hypothesis tests, or equivalence tests. Calculate uncertainty estimates using the delta method, bootstrapping, or simulation-based inference.
Author: Vincent Arel-Bundock [aut, cre, cph]
,
Marcio Augusto Diniz [ctb] ,
Noah Greifer [ctb] ,
Etienne Bacher [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between marginaleffects versions 0.9.0 dated 2023-02-01 and 0.10.0 dated 2023-02-22
marginaleffects-0.10.0/marginaleffects/DESCRIPTION | 56 - marginaleffects-0.10.0/marginaleffects/MD5 | 455 +++++----- marginaleffects-0.10.0/marginaleffects/NAMESPACE | 11 marginaleffects-0.10.0/marginaleffects/NEWS.md | 50 + marginaleffects-0.10.0/marginaleffects/R/bootstrap_boot.R | 2 marginaleffects-0.10.0/marginaleffects/R/bootstrap_fwb.R | 2 marginaleffects-0.10.0/marginaleffects/R/bootstrap_rsample.R | 2 marginaleffects-0.10.0/marginaleffects/R/broom.R | 10 marginaleffects-0.10.0/marginaleffects/R/by.R | 2 marginaleffects-0.10.0/marginaleffects/R/ci.R | 21 marginaleffects-0.10.0/marginaleffects/R/comparisons.R | 184 ++-- marginaleffects-0.10.0/marginaleffects/R/complete_levels.R | 11 marginaleffects-0.10.0/marginaleffects/R/datagrid.R | 52 - marginaleffects-0.10.0/marginaleffects/R/equivalence.R | 7 marginaleffects-0.10.0/marginaleffects/R/get_contrast_data.R | 42 marginaleffects-0.10.0/marginaleffects/R/get_contrast_data_character.R | 7 marginaleffects-0.10.0/marginaleffects/R/get_contrast_data_factor.R | 30 marginaleffects-0.10.0/marginaleffects/R/get_contrast_data_numeric.R | 21 marginaleffects-0.10.0/marginaleffects/R/get_contrasts.R | 94 +- marginaleffects-0.10.0/marginaleffects/R/get_hypothesis.R | 15 marginaleffects-0.10.0/marginaleffects/R/get_jacobian.R | 67 + marginaleffects-0.10.0/marginaleffects/R/get_modeldata.R | 36 marginaleffects-0.10.0/marginaleffects/R/get_predict.R | 114 -- marginaleffects-0.10.0/marginaleffects/R/get_se_delta.R | 12 marginaleffects-0.10.0/marginaleffects/R/hypotheses.R | 48 - marginaleffects-0.10.0/marginaleffects/R/imputation.R |only marginaleffects-0.10.0/marginaleffects/R/inferences.R | 25 marginaleffects-0.10.0/marginaleffects/R/marginal_means.R |only marginaleffects-0.10.0/marginaleffects/R/methods_MASS.R | 9 marginaleffects-0.10.0/marginaleffects/R/methods_MCMCglmm.R |only marginaleffects-0.10.0/marginaleffects/R/methods_Rchoice.R |only marginaleffects-0.10.0/marginaleffects/R/methods_aod.R | 4 marginaleffects-0.10.0/marginaleffects/R/methods_bife.R | 4 marginaleffects-0.10.0/marginaleffects/R/methods_biglm.R | 2 marginaleffects-0.10.0/marginaleffects/R/methods_brms.R | 10 marginaleffects-0.10.0/marginaleffects/R/methods_crch.R | 5 marginaleffects-0.10.0/marginaleffects/R/methods_fixest.R | 111 -- marginaleffects-0.10.0/marginaleffects/R/methods_gamlss.R | 4 marginaleffects-0.10.0/marginaleffects/R/methods_glmmTMB.R | 9 marginaleffects-0.10.0/marginaleffects/R/methods_inferences_simulation.R | 4 marginaleffects-0.10.0/marginaleffects/R/methods_lme4.R | 4 marginaleffects-0.10.0/marginaleffects/R/methods_mclogit.R | 8 marginaleffects-0.10.0/marginaleffects/R/methods_mhurdle.R | 2 marginaleffects-0.10.0/marginaleffects/R/methods_nnet.R | 2 marginaleffects-0.10.0/marginaleffects/R/methods_ordinal.R | 4 marginaleffects-0.10.0/marginaleffects/R/methods_quantreg.R | 2 marginaleffects-0.10.0/marginaleffects/R/methods_rms.R | 25 marginaleffects-0.10.0/marginaleffects/R/methods_robustlmm.R | 6 marginaleffects-0.10.0/marginaleffects/R/methods_survival.R | 2 marginaleffects-0.10.0/marginaleffects/R/methods_tobit1.R | 2 marginaleffects-0.10.0/marginaleffects/R/package.R | 9 marginaleffects-0.10.0/marginaleffects/R/plot.R | 84 - marginaleffects-0.10.0/marginaleffects/R/plot_build.R |only marginaleffects-0.10.0/marginaleffects/R/plot_comparisons.R | 295 +----- marginaleffects-0.10.0/marginaleffects/R/plot_predictions.R | 384 ++------ marginaleffects-0.10.0/marginaleffects/R/plot_slopes.R | 90 + marginaleffects-0.10.0/marginaleffects/R/posterior_draws.R | 2 marginaleffects-0.10.0/marginaleffects/R/predictions.R | 269 +++-- marginaleffects-0.10.0/marginaleffects/R/print.R | 95 +- marginaleffects-0.10.0/marginaleffects/R/recall.R | 5 marginaleffects-0.10.0/marginaleffects/R/sanitize_condition.R |only marginaleffects-0.10.0/marginaleffects/R/sanitize_newdata.R | 54 - marginaleffects-0.10.0/marginaleffects/R/sanitize_type.R | 60 - marginaleffects-0.10.0/marginaleffects/R/sanitize_variables.R | 387 ++++---- marginaleffects-0.10.0/marginaleffects/R/sanity_by.R | 5 marginaleffects-0.10.0/marginaleffects/R/sanity_dots.R | 12 marginaleffects-0.10.0/marginaleffects/R/sanity_model.R | 5 marginaleffects-0.10.0/marginaleffects/R/slopes.R | 128 +- marginaleffects-0.10.0/marginaleffects/R/summary.R | 3 marginaleffects-0.10.0/marginaleffects/R/type_dictionary.R | 245 ++--- marginaleffects-0.10.0/marginaleffects/R/utils.R | 52 + marginaleffects-0.10.0/marginaleffects/README.md | 320 +------ marginaleffects-0.10.0/marginaleffects/inst/WORDLIST | 10 marginaleffects-0.10.0/marginaleffects/inst/tinytest/_tinyviztest/df-t.txt |only marginaleffects-0.10.0/marginaleffects/inst/tinytest/_tinyviztest/df-z.txt |only marginaleffects-0.10.0/marginaleffects/inst/tinytest/_tinyviztest/equivalence-avg_comparisons.txt | 10 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More information about marginaleffects at CRAN
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Title: Tools for Analyzing Lactate Thresholds
Description: Set of tools for analyzing lactate thresholds from a step incremental test to exhaustion. Easily analyze
the methods Log-log, Onset of Blood Lactate Accumulation (OBLA), Baseline plus (Bsln+), Dmax, Lactate Turning Point (LTP),
and Lactate / Intensity ratio (LTratio) in cycling, running, or swimming.
Beaver WL, Wasserman K, Whipp BJ (1985) <doi:10.1152/jappl.1985.59.6.1936>.
Heck H, Mader A, Hess G, Mücke S, Müller R, Hollmann W (1985) <doi:10.1055/s-2008-1025824>.
Kindermann W, Simon G, Keul J (1979) <doi:10.1007/BF00421101>.
Skinner JS, Mclellan TH (1980) <doi:10.1080/02701367.1980.10609285>.
Berg A, Jakob E, Lehmann M, Dickhuth HH, Huber G, Keul J (1990) <PMID:2408033>.
Zoladz JA, Rademaker AC, Sargeant AJ (1995) <doi:10.1113/jphysiol.1995.sp020959>.
Cheng B, Kuipers H, Snyder A, Keizer H, Jeukendrup A, Hesselink M (1992) <doi:10.1055/s-2007-1021309>.
Bishop D, Jenkins DG, Mackinnon LT (1998) <doi:10.1097/00005768-199808000-00014>.
Hug [...truncated...]
Author: Felipe Mattioni Maturana [aut, cre]
Maintainer: Felipe Mattioni Maturana <felipe.mattioni@med.uni-tuebingen.de>
Diff between lactater versions 0.1.1 dated 2022-09-08 and 0.1.2 dated 2023-02-22
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/method-loglog.R | 7 ++++++- R/plot.R | 30 ++++++++++++++++++++++++++---- README.md | 18 +++++++++--------- build/partial.rdb |binary 7 files changed, 54 insertions(+), 23 deletions(-)
Title: Diversity-Dependent Diversification
Description: Implements maximum likelihood and bootstrap methods based on
the diversity-dependent birth-death process to test whether
speciation or extinction are diversity-dependent, under various
models including various types of key innovations.
See Etienne et al. 2012, Proc. Roy. Soc. B 279: 1300-1309,
<DOI:10.1098/rspb.2011.1439>,
Etienne & Haegeman 2012, Am. Nat. 180: E75-E89,
<DOI:10.1086/667574>,
Etienne et al. 2016. Meth. Ecol. Evol. 7: 1092-1099,
<DOI:10.1111/2041-210X.12565> and
Laudanno et al. 2021. Syst. Biol. 70: 389–407,
<DOI:10.1093/sysbio/syaa048>.
Also contains functions to simulate the diversity-dependent
process.
Author: Rampal S. Etienne [aut, cre] ,
Bart Haegeman [aut] ,
Hanno Hildenbrandt [ctb] ,
Giovanni Laudanno [ctb]
Maintainer: Rampal S. Etienne <r.s.etienne@rug.nl>
Diff between DDD versions 5.0 dated 2021-07-19 and 5.2.1 dated 2023-02-22
DESCRIPTION | 54 +++++++++++++++++++------ MD5 | 37 +++++++++-------- NAMESPACE | 1 R/DDD-package.R |only R/dd_KI_sim.R | 15 ++++--- R/dd_utils.R | 59 ++++++++++++++++++---------- build |only man/DDD-package.Rd |only man/dd_SR_ML.Rd | 4 - src/RcppExports.cpp | 6 ++ src/config.h |only src/dd_integrate_bw_odeint.cpp | 1 src/dd_integrate_odeint.cpp | 1 src/dd_integrate_td_odeint.cpp | 1 src/dd_logliknorm_odeint.cpp | 1 src/odeint_helper.h | 5 -- tests/testthat.R | 12 +++-- tests/testthat/test-ddd_sample2.R | 2 tests/testthat/test-optimizer.R | 2 tests/testthat/test-rng_respecting_sample.R | 2 tests/testthat/test_DDD.R | 10 ---- tests/testthat/test_pars_dd_loglik.R |only 22 files changed, 137 insertions(+), 76 deletions(-)
Title: Scalable Bayesian Disease Mapping Models for High-Dimensional
Data
Description: Implements several spatial and spatio-temporal scalable disease mapping models for high-dimensional count data using the INLA technique for approximate Bayesian inference in latent Gaussian models (Orozco-Acosta et al., 2021 <doi:10.1016/j.spasta.2021.100496>; Orozco-Acosta et al., 2023 <doi:10.1016/j.cmpb.2023.107403> and Vicente et al., 2022 <arXiv:2210.14849>). The creation and develpment of this package has been supported by Project MTM2017-82553-R (AEI/FEDER, UE) and Project PID2020-113125RB-I00/MCIN/AEI/10.13039/501100011033. It has also been partially funded by the Public University of Navarra (project PJUPNA2001).
Author: Aritz Adin [aut, cre] ,
Erick Orozco-Acosta [aut] ,
Maria Dolores Ugarte [aut]
Maintainer: Aritz Adin <aritz.adin@unavarra.es>
Diff between bigDM versions 0.5.0 dated 2022-10-28 and 0.5.1 dated 2023-02-22
DESCRIPTION | 10 +- MD5 | 36 +++++----- NEWS | 5 + R/CAR_INLA.R | 43 ++++++++--- R/MCAR_INLA.R | 169 +++++++++++++++++++++++++---------------------- R/STCAR_INLA.R | 76 +++++++++++++-------- R/clustering_partition.R | 2 R/connect_subgraphs.R | 4 - R/data.R | 1 R/mergeINLA.R | 125 +++++++++++++++++----------------- README.md | 9 +- build/partial.rdb |binary data/Data_LungCancer.rda |binary inst/CITATION | 106 ++++++++++++++--------------- inst/REFERENCES.bib | 28 ++++++- man/CAR_INLA.Rd | 12 +++ man/Data_LungCancer.Rd | 1 man/MCAR_INLA.Rd | 16 +++- man/STCAR_INLA.Rd | 16 ++++ 19 files changed, 389 insertions(+), 270 deletions(-)
Title: Active Set and Generalized PAVA for Isotone Optimization
Description: Contains two main functions: one for
solving general isotone regression problems using the
pool-adjacent-violators algorithm (PAVA); another one provides
a framework for active set methods for isotone optimization
problems with arbitrary order restrictions. Various types of
loss functions are prespecified.
Author: Patrick Mair [aut, cre],
Jan De Leeuw [aut],
Kurt Hornik [aut]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between isotone versions 1.1-0 dated 2015-07-24 and 1.1-1 dated 2023-02-22
DESCRIPTION | 14 ++++++++------ MD5 | 8 ++++---- build/vignette.rds |binary inst/CITATION | 22 ++++++++++------------ inst/doc/isotone.pdf |binary 5 files changed, 22 insertions(+), 22 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-15 0.1.2
2020-05-30 0.1.1
2020-05-29 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-02-08 0.1.15