Wed, 22 Feb 2023

Package vein updated to version 1.0.0 with previous version 0.9.9 dated 2022-08-17

Title: Vehicular Emissions Inventories
Description: Elaboration of vehicular emissions inventories, consisting in four stages, pre-processing activity data, preparing emissions factors, estimating the emissions and post-processing of emissions in maps and databases. More details in Ibarra-Espinosa et al (2018) <doi:10.5194/gmd-11-2209-2018>. Before using VEIN you need to know the vehicular composition of your study area, in other words, the combination of of type of vehicles, size and fuel of the fleet. Then, it is recommended to start with the project to download a template to create a structure of directories and scripts.
Author: Sergio Ibarra-Espinosa [aut, cre] , Joao Bazzo [ctb] , Mario Gavidia-Calderon [ctb]
Maintainer: Sergio Ibarra-Espinosa <zergioibarra@gmail.com>

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Package parsnip updated to version 1.0.4 with previous version 1.0.3 dated 2022-11-11

Title: A Common API to Modeling and Analysis Functions
Description: A common interface is provided to allow users to specify a model without having to remember the different argument names across different functions or computational engines (e.g. 'R', 'Spark', 'Stan', 'H2O', etc).
Author: Max Kuhn [aut, cre], Davis Vaughan [aut], Emil Hvitfeldt [ctb], Posit Software PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>

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Package corto updated to version 1.2.0 with previous version 1.1.11 dated 2022-05-23

Title: Inference of Gene Regulatory Networks
Description: We present 'corto' (Correlation Tool), a simple package to infer gene regulatory networks and visualize master regulators from gene expression data using DPI (Data Processing Inequality) and bootstrapping to recover edges. An initial step is performed to calculate all significant edges between a list of source nodes (centroids) and target genes. Then all triplets containing two centroids and one target are tested in a DPI step which removes edges. A bootstrapping process then calculates the robustness of the network, eventually re-adding edges previously removed by DPI. The algorithm has been optimized to run outside a computing cluster, using a fast correlation implementation. The package finally provides functions to calculate network enrichment analysis from RNA-Seq and ATAC-Seq signatures as described in the article by Giorgi lab (2020) <doi:10.1093/bioinformatics/btaa223>.
Author: Federico M. Giorgi [aut, cre], Daniele Mercatelli [ctb], Gonzalo Lopez-Garcia [ctb]
Maintainer: Federico M. Giorgi <federico.giorgi@gmail.com>

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Package civis updated to version 3.1.0 with previous version 3.0.0 dated 2020-06-22

Title: R Client for the 'Civis Platform API'
Description: A convenient interface for making requests directly to the 'Civis Platform API' <https://www.civisanalytics.com/platform/>. Full documentation available 'here' <https://civisanalytics.github.io/civis-r/>.
Author: Peter Cooman [cre, ctb], Patrick Miller [aut], Keith Ingersoll [aut], Bill Lattner [ctb], Anh Le [ctb], Michelangelo D'Agostino [ctb], Sam Weiss [ctb], Stephen Hoover [ctb], Danning Chen [ctb], Elizabeth Sander [ctb], Madison Hobbs [ctb], Anna Bladey [...truncated...]
Maintainer: Peter Cooman <pcooman@civisanalytics.com>

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 civis-3.1.0/civis/DESCRIPTION                                                       |   29 
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 civis-3.1.0/civis/R/civis_ml.R                                                      |   27 
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 civis-3.1.0/civis/R/io.R                                                            |    2 
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 civis-3.1.0/civis/R/scripts.R                                                       |    1 
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 civis-3.1.0/civis/man/await.Rd                                                      |    4 
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 civis-3.1.0/civis/man/clusters_get_kubernetes.Rd                                    |    4 
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 civis-3.1.0/civis/man/clusters_get_kubernetes_partitions.Rd                         |    2 
 civis-3.1.0/civis/man/clusters_list_kubernetes.Rd                                   |   13 
 civis-3.1.0/civis/man/clusters_list_kubernetes_deployments.Rd                       |    2 
 civis-3.1.0/civis/man/clusters_list_kubernetes_instance_configs_active_workloads.Rd |only
 civis-3.1.0/civis/man/clusters_list_kubernetes_partitions.Rd                        |    2 
 civis-3.1.0/civis/man/clusters_patch_kubernetes.Rd                                  |    8 
 civis-3.1.0/civis/man/clusters_patch_kubernetes_partitions.Rd                       |    4 
 civis-3.1.0/civis/man/clusters_post_kubernetes.Rd                                   |    7 
 civis-3.1.0/civis/man/clusters_post_kubernetes_partitions.Rd                        |    4 
 civis-3.1.0/civis/man/credentials_delete.Rd                                         |only
 civis-3.1.0/civis/man/credentials_get.Rd                                            |   11 
 civis-3.1.0/civis/man/credentials_list.Rd                                           |   20 
 civis-3.1.0/civis/man/credentials_list_dependencies.Rd                              |only
 civis-3.1.0/civis/man/credentials_list_types.Rd                                     |only
 civis-3.1.0/civis/man/credentials_patch.Rd                                          |only
 civis-3.1.0/civis/man/credentials_post.Rd                                           |   23 
 civis-3.1.0/civis/man/credentials_post_authenticate.Rd                              |   13 
 civis-3.1.0/civis/man/credentials_put.Rd                                            |   23 
 civis-3.1.0/civis/man/credentials_put_transfer.Rd                                   |only
 civis-3.1.0/civis/man/databases_get_schema_privileges.Rd                            |only
 civis-3.1.0/civis/man/databases_get_table_privilegesschema_name.Rd                  |only
 civis-3.1.0/civis/man/databases_list_schemas.Rd                                     |    6 
 civis-3.1.0/civis/man/databases_list_tables.Rd                                      |    5 
 civis-3.1.0/civis/man/databases_list_tables_search.Rd                               |    5 
 civis-3.1.0/civis/man/download_civis.Rd                                             |    8 
 civis-3.1.0/civis/man/enhancements_get_cass_ncoa.Rd                                 |    7 
 civis-3.1.0/civis/man/enhancements_get_cass_ncoa_runs.Rd                            |    5 
 civis-3.1.0/civis/man/enhancements_get_civis_data_match.Rd                          |   10 
 civis-3.1.0/civis/man/enhancements_get_civis_data_match_runs.Rd                     |    5 
 civis-3.1.0/civis/man/enhancements_get_geocode.Rd                                   |    6 
 civis-3.1.0/civis/man/enhancements_get_geocode_runs.Rd                              |    5 
 civis-3.1.0/civis/man/enhancements_list.Rd                                          |    2 
 civis-3.1.0/civis/man/enhancements_list_cass_ncoa_dependencies.Rd                   |only
 civis-3.1.0/civis/man/enhancements_list_cass_ncoa_runs.Rd                           |    5 
 civis-3.1.0/civis/man/enhancements_list_civis_data_match_dependencies.Rd            |only
 civis-3.1.0/civis/man/enhancements_list_civis_data_match_runs.Rd                    |    5 
 civis-3.1.0/civis/man/enhancements_list_geocode_dependencies.Rd                     |only
 civis-3.1.0/civis/man/enhancements_list_geocode_runs.Rd                             |    5 
 civis-3.1.0/civis/man/enhancements_patch_cass_ncoa.Rd                               |   17 
 civis-3.1.0/civis/man/enhancements_patch_civis_data_match.Rd                        |   19 
 civis-3.1.0/civis/man/enhancements_patch_geocode.Rd                                 |   11 
 civis-3.1.0/civis/man/enhancements_post_cass_ncoa.Rd                                |   17 
 civis-3.1.0/civis/man/enhancements_post_cass_ncoa_runs.Rd                           |    5 
 civis-3.1.0/civis/man/enhancements_post_civis_data_match.Rd                         |   19 
 civis-3.1.0/civis/man/enhancements_post_civis_data_match_clone.Rd                   |   10 
 civis-3.1.0/civis/man/enhancements_post_civis_data_match_runs.Rd                    |    5 
 civis-3.1.0/civis/man/enhancements_post_geocode.Rd                                  |   11 
 civis-3.1.0/civis/man/enhancements_post_geocode_runs.Rd                             |    5 
 civis-3.1.0/civis/man/enhancements_put_cass_ncoa.Rd                                 |   17 
 civis-3.1.0/civis/man/enhancements_put_cass_ncoa_archive.Rd                         |    7 
 civis-3.1.0/civis/man/enhancements_put_cass_ncoa_transfer.Rd                        |only
 civis-3.1.0/civis/man/enhancements_put_civis_data_match.Rd                          |   19 
 civis-3.1.0/civis/man/enhancements_put_civis_data_match_archive.Rd                  |   10 
 civis-3.1.0/civis/man/enhancements_put_civis_data_match_transfer.Rd                 |only
 civis-3.1.0/civis/man/enhancements_put_geocode.Rd                                   |   11 
 civis-3.1.0/civis/man/enhancements_put_geocode_archive.Rd                           |    6 
 civis-3.1.0/civis/man/enhancements_put_geocode_transfer.Rd                          |only
 civis-3.1.0/civis/man/exports_delete_files_csv_runs.Rd                              |only
 civis-3.1.0/civis/man/exports_get_files_csv.Rd                                      |    1 
 civis-3.1.0/civis/man/exports_get_files_csv_runs.Rd                                 |only
 civis-3.1.0/civis/man/exports_list.Rd                                               |    6 
 civis-3.1.0/civis/man/exports_list_files_csv_runs.Rd                                |only
 civis-3.1.0/civis/man/exports_list_files_csv_runs_logs.Rd                           |only
 civis-3.1.0/civis/man/exports_list_files_csv_runs_outputs.Rd                        |only
 civis-3.1.0/civis/man/exports_patch_files_csv.Rd                                    |    1 
 civis-3.1.0/civis/man/exports_post_files_csv.Rd                                     |    1 
 civis-3.1.0/civis/man/exports_post_files_csv_runs.Rd                                |only
 civis-3.1.0/civis/man/exports_put_files_csv.Rd                                      |    1 
 civis-3.1.0/civis/man/exports_put_files_csv_archive.Rd                              |    1 
 civis-3.1.0/civis/man/feature_flags_delete_organizations.Rd                         |only
 civis-3.1.0/civis/man/feature_flags_delete_users.Rd                                 |    2 
 civis-3.1.0/civis/man/feature_flags_get.Rd                                          |    5 
 civis-3.1.0/civis/man/feature_flags_list.Rd                                         |    6 
 civis-3.1.0/civis/man/feature_flags_put_groups.Rd                                   |    6 
 civis-3.1.0/civis/man/feature_flags_put_organizations.Rd                            |only
 civis-3.1.0/civis/man/feature_flags_put_users.Rd                                    |    8 
 civis-3.1.0/civis/man/fetch_output_file_ids.Rd                                      |    4 
 civis-3.1.0/civis/man/files_get.Rd                                                  |    1 
 civis-3.1.0/civis/man/files_list_dependencies.Rd                                    |only
 civis-3.1.0/civis/man/files_patch.Rd                                                |    1 
 civis-3.1.0/civis/man/files_post.Rd                                                 |    1 
 civis-3.1.0/civis/man/files_put.Rd                                                  |    1 
 civis-3.1.0/civis/man/files_put_transfer.Rd                                         |only
 civis-3.1.0/civis/man/git_repos_list_refs.Rd                                        |only
 civis-3.1.0/civis/man/groups_get.Rd                                                 |   16 
 civis-3.1.0/civis/man/groups_list.Rd                                                |   15 
 civis-3.1.0/civis/man/groups_list_child_groups.Rd                                   |only
 civis-3.1.0/civis/man/groups_patch.Rd                                               |   25 
 civis-3.1.0/civis/man/groups_post.Rd                                                |   25 
 civis-3.1.0/civis/man/groups_put.Rd                                                 |   25 
 civis-3.1.0/civis/man/groups_put_members.Rd                                         |   16 
 civis-3.1.0/civis/man/imports_delete_files_csv_runs.Rd                              |only
 civis-3.1.0/civis/man/imports_get.Rd                                                |    6 
 civis-3.1.0/civis/man/imports_get_files_csv.Rd                                      |    1 
 civis-3.1.0/civis/man/imports_get_files_csv_runs.Rd                                 |only
 civis-3.1.0/civis/man/imports_get_files_runs.Rd                                     |    5 
 civis-3.1.0/civis/man/imports_list.Rd                                               |   11 
 civis-3.1.0/civis/man/imports_list_dependencies.Rd                                  |only
 civis-3.1.0/civis/man/imports_list_files_csv_runs.Rd                                |only
 civis-3.1.0/civis/man/imports_list_files_csv_runs_logs.Rd                           |only
 civis-3.1.0/civis/man/imports_list_files_runs.Rd                                    |    5 
 civis-3.1.0/civis/man/imports_patch_files_csv.Rd                                    |    1 
 civis-3.1.0/civis/man/imports_post.Rd                                               |   11 
 civis-3.1.0/civis/man/imports_post_files_csv.Rd                                     |    1 
 civis-3.1.0/civis/man/imports_post_files_csv_runs.Rd                                |only
 civis-3.1.0/civis/man/imports_post_files_runs.Rd                                    |    5 
 civis-3.1.0/civis/man/imports_post_syncs.Rd                                         |    4 
 civis-3.1.0/civis/man/imports_put.Rd                                                |   11 
 civis-3.1.0/civis/man/imports_put_archive.Rd                                        |    6 
 civis-3.1.0/civis/man/imports_put_files_csv.Rd                                      |    1 
 civis-3.1.0/civis/man/imports_put_files_csv_archive.Rd                              |    1 
 civis-3.1.0/civis/man/imports_put_syncs.Rd                                          |    4 
 civis-3.1.0/civis/man/imports_put_syncs_archive.Rd                                  |    2 
 civis-3.1.0/civis/man/imports_put_transfer.Rd                                       |only
 civis-3.1.0/civis/man/jobs_get.Rd                                                   |   14 
 civis-3.1.0/civis/man/jobs_list.Rd                                                  |   16 
 civis-3.1.0/civis/man/jobs_list_dependencies.Rd                                     |only
 civis-3.1.0/civis/man/jobs_list_parents.Rd                                          |   14 
 civis-3.1.0/civis/man/jobs_list_workflows.Rd                                        |    5 
 civis-3.1.0/civis/man/jobs_put_archive.Rd                                           |   14 
 civis-3.1.0/civis/man/jobs_put_transfer.Rd                                          |only
 civis-3.1.0/civis/man/json_values_list_dependencies.Rd                              |only
 civis-3.1.0/civis/man/json_values_put_transfer.Rd                                   |only
 civis-3.1.0/civis/man/media_get_optimizations_runs.Rd                               |    5 
 civis-3.1.0/civis/man/media_list_optimizations_runs.Rd                              |    5 
 civis-3.1.0/civis/man/media_post_optimizations_runs.Rd                              |    5 
 civis-3.1.0/civis/man/models_get.Rd                                                 |    5 
 civis-3.1.0/civis/man/models_list.Rd                                                |   11 
 civis-3.1.0/civis/man/models_list_dependencies.Rd                                   |only
 civis-3.1.0/civis/man/models_list_schedules.Rd                                      |    5 
 civis-3.1.0/civis/man/models_put_archive.Rd                                         |    5 
 civis-3.1.0/civis/man/models_put_transfer.Rd                                        |only
 civis-3.1.0/civis/man/multipart_upload.Rd                                           |    2 
 civis-3.1.0/civis/man/notebooks_get.Rd                                              |    9 
 civis-3.1.0/civis/man/notebooks_get_deployments.Rd                                  |    7 
 civis-3.1.0/civis/man/notebooks_get_git_commits.Rd                                  |    4 
 civis-3.1.0/civis/man/notebooks_list.Rd                                             |    9 
 civis-3.1.0/civis/man/notebooks_list_dependencies.Rd                                |only
 civis-3.1.0/civis/man/notebooks_list_deployments.Rd                                 |    7 
 civis-3.1.0/civis/man/notebooks_list_git.Rd                                         |    5 
 civis-3.1.0/civis/man/notebooks_list_git_commits.Rd                                 |    4 
 civis-3.1.0/civis/man/notebooks_patch.Rd                                            |   12 
 civis-3.1.0/civis/man/notebooks_patch_git.Rd                                        |only
 civis-3.1.0/civis/man/notebooks_post.Rd                                             |   12 
 civis-3.1.0/civis/man/notebooks_post_clone.Rd                                       |    9 
 civis-3.1.0/civis/man/notebooks_post_deployments.Rd                                 |   11 
 civis-3.1.0/civis/man/notebooks_post_git_checkout.Rd                                |only
 civis-3.1.0/civis/man/notebooks_post_git_checkout_latest.Rd                         |only
 civis-3.1.0/civis/man/notebooks_put.Rd                                              |   12 
 civis-3.1.0/civis/man/notebooks_put_archive.Rd                                      |    9 
 civis-3.1.0/civis/man/notebooks_put_git.Rd                                          |    8 
 civis-3.1.0/civis/man/notebooks_put_transfer.Rd                                     |only
 civis-3.1.0/civis/man/permission_sets_delete_resources.Rd                           |only
 civis-3.1.0/civis/man/permission_sets_delete_resources_shares_groups.Rd             |only
 civis-3.1.0/civis/man/permission_sets_delete_resources_shares_users.Rd              |only
 civis-3.1.0/civis/man/permission_sets_delete_shares_groups.Rd                       |only
 civis-3.1.0/civis/man/permission_sets_delete_shares_users.Rd                        |only
 civis-3.1.0/civis/man/permission_sets_get.Rd                                        |only
 civis-3.1.0/civis/man/permission_sets_get_resources.Rd                              |only
 civis-3.1.0/civis/man/permission_sets_list.Rd                                       |only
 civis-3.1.0/civis/man/permission_sets_list_dependencies.Rd                          |only
 civis-3.1.0/civis/man/permission_sets_list_resources.Rd                             |only
 civis-3.1.0/civis/man/permission_sets_list_resources_shares.Rd                      |only
 civis-3.1.0/civis/man/permission_sets_list_shares.Rd                                |only
 civis-3.1.0/civis/man/permission_sets_list_users_permissions.Rd                     |only
 civis-3.1.0/civis/man/permission_sets_patch.Rd                                      |only
 civis-3.1.0/civis/man/permission_sets_patch_resources.Rd                            |only
 civis-3.1.0/civis/man/permission_sets_post.Rd                                       |only
 civis-3.1.0/civis/man/permission_sets_post_resources.Rd                             |only
 civis-3.1.0/civis/man/permission_sets_put.Rd                                        |only
 civis-3.1.0/civis/man/permission_sets_put_archive.Rd                                |only
 civis-3.1.0/civis/man/permission_sets_put_resources_shares_groups.Rd                |only
 civis-3.1.0/civis/man/permission_sets_put_resources_shares_users.Rd                 |only
 civis-3.1.0/civis/man/permission_sets_put_shares_groups.Rd                          |only
 civis-3.1.0/civis/man/permission_sets_put_shares_users.Rd                           |only
 civis-3.1.0/civis/man/permission_sets_put_transfer.Rd                               |only
 civis-3.1.0/civis/man/predictions_get.Rd                                            |    5 
 civis-3.1.0/civis/man/predictions_list_schedules.Rd                                 |    5 
 civis-3.1.0/civis/man/projects_get.Rd                                               |   12 
 civis-3.1.0/civis/man/projects_list.Rd                                              |    9 
 civis-3.1.0/civis/man/projects_list_dependencies.Rd                                 |only
 civis-3.1.0/civis/man/projects_post.Rd                                              |   16 
 civis-3.1.0/civis/man/projects_post_clone.Rd                                        |only
 civis-3.1.0/civis/man/projects_put.Rd                                               |   22 
 civis-3.1.0/civis/man/projects_put_archive.Rd                                       |   12 
 civis-3.1.0/civis/man/projects_put_auto_share.Rd                                    |only
 civis-3.1.0/civis/man/projects_put_transfer.Rd                                      |only
 civis-3.1.0/civis/man/queries_delete.Rd                                             |only
 civis-3.1.0/civis/man/queries_get.Rd                                                |    5 
 civis-3.1.0/civis/man/queries_get_runs.Rd                                           |    5 
 civis-3.1.0/civis/man/queries_list.Rd                                               |   32 
 civis-3.1.0/civis/man/queries_list_runs.Rd                                          |    5 
 civis-3.1.0/civis/man/queries_post.Rd                                               |    6 
 civis-3.1.0/civis/man/queries_post_runs.Rd                                          |    5 
 civis-3.1.0/civis/man/queries_put_scripts.Rd                                        |    5 
 civis-3.1.0/civis/man/query_civis.Rd                                                |    8 
 civis-3.1.0/civis/man/query_civis_file.Rd                                           |    8 
 civis-3.1.0/civis/man/read_civis.Rd                                                 |   10 
 civis-3.1.0/civis/man/remote_hosts_delete_shares_groups.Rd                          |only
 civis-3.1.0/civis/man/remote_hosts_delete_shares_users.Rd                           |only
 civis-3.1.0/civis/man/remote_hosts_get.Rd                                           |only
 civis-3.1.0/civis/man/remote_hosts_list.Rd                                          |   12 
 civis-3.1.0/civis/man/remote_hosts_list_shares.Rd                                   |only
 civis-3.1.0/civis/man/remote_hosts_patch.Rd                                         |only
 civis-3.1.0/civis/man/remote_hosts_post.Rd                                          |   26 
 civis-3.1.0/civis/man/remote_hosts_put.Rd                                           |only
 civis-3.1.0/civis/man/remote_hosts_put_shares_groups.Rd                             |only
 civis-3.1.0/civis/man/remote_hosts_put_shares_users.Rd                              |only
 civis-3.1.0/civis/man/reports_get.Rd                                                |    1 
 civis-3.1.0/civis/man/reports_get_git_commits.Rd                                    |    4 
 civis-3.1.0/civis/man/reports_get_services.Rd                                       |    2 
 civis-3.1.0/civis/man/reports_list.Rd                                               |    6 
 civis-3.1.0/civis/man/reports_list_dependencies.Rd                                  |only
 civis-3.1.0/civis/man/reports_list_git.Rd                                           |    5 
 civis-3.1.0/civis/man/reports_list_git_commits.Rd                                   |    4 
 civis-3.1.0/civis/man/reports_list_services_dependencies.Rd                         |only
 civis-3.1.0/civis/man/reports_patch.Rd                                              |    1 
 civis-3.1.0/civis/man/reports_patch_git.Rd                                          |only
 civis-3.1.0/civis/man/reports_patch_services.Rd                                     |    2 
 civis-3.1.0/civis/man/reports_post.Rd                                               |    1 
 civis-3.1.0/civis/man/reports_post_git_checkout.Rd                                  |only
 civis-3.1.0/civis/man/reports_post_git_checkout_latest.Rd                           |only
 civis-3.1.0/civis/man/reports_post_grants.Rd                                        |    1 
 civis-3.1.0/civis/man/reports_post_services.Rd                                      |    2 
 civis-3.1.0/civis/man/reports_put_archive.Rd                                        |    1 
 civis-3.1.0/civis/man/reports_put_git.Rd                                            |    8 
 civis-3.1.0/civis/man/reports_put_services_archive.Rd                               |only
 civis-3.1.0/civis/man/reports_put_services_transfer.Rd                              |only
 civis-3.1.0/civis/man/reports_put_transfer.Rd                                       |only
 civis-3.1.0/civis/man/roles_list.Rd                                                 |only
 civis-3.1.0/civis/man/scripts_get.Rd                                                |    6 
 civis-3.1.0/civis/man/scripts_get_containers.Rd                                     |   18 
 civis-3.1.0/civis/man/scripts_get_containers_runs.Rd                                |    7 
 civis-3.1.0/civis/man/scripts_get_custom.Rd                                         |   20 
 civis-3.1.0/civis/man/scripts_get_custom_runs.Rd                                    |    7 
 civis-3.1.0/civis/man/scripts_get_javascript.Rd                                     |    7 
 civis-3.1.0/civis/man/scripts_get_javascript_git_commits.Rd                         |    4 
 civis-3.1.0/civis/man/scripts_get_javascript_runs.Rd                                |    5 
 civis-3.1.0/civis/man/scripts_get_python3.Rd                                        |    8 
 civis-3.1.0/civis/man/scripts_get_python3_git_commits.Rd                            |    4 
 civis-3.1.0/civis/man/scripts_get_python3_runs.Rd                                   |    7 
 civis-3.1.0/civis/man/scripts_get_r.Rd                                              |    8 
 civis-3.1.0/civis/man/scripts_get_r_git_commits.Rd                                  |    4 
 civis-3.1.0/civis/man/scripts_get_r_runs.Rd                                         |    7 
 civis-3.1.0/civis/man/scripts_get_sql.Rd                                            |    7 
 civis-3.1.0/civis/man/scripts_get_sql_git_commits.Rd                                |    4 
 civis-3.1.0/civis/man/scripts_get_sql_runs.Rd                                       |   14 
 civis-3.1.0/civis/man/scripts_list.Rd                                               |    2 
 civis-3.1.0/civis/man/scripts_list_containers_dependencies.Rd                       |only
 civis-3.1.0/civis/man/scripts_list_containers_runs.Rd                               |    7 
 civis-3.1.0/civis/man/scripts_list_custom.Rd                                        |    2 
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More information about civis at CRAN
Permanent link

Package riskmetric updated to version 0.2.0 with previous version 0.1.2 dated 2022-01-28

Title: Risk Metrics to Evaluating R Packages
Description: Facilities for assessing R packages against a number of metrics to help quantify their robustness.
Author: R Validation Hub [aut], Doug Kelkhoff [aut], Marly Gotti [aut], Eli Miller [cre, aut], Kevin K [aut], Yilong Zhang [aut], Eric Milliman [aut], Juliane Manitz [aut], Mark Padgham [ctb], PSI special interest group Application and Implementation of Meth [...truncated...]
Maintainer: Eli Miller <eli.miller@atorusresearch.com>

Diff between riskmetric versions 0.1.2 dated 2022-01-28 and 0.2.0 dated 2023-02-22

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More information about riskmetric at CRAN
Permanent link

Package posterior updated to version 1.4.0 with previous version 1.3.1 dated 2022-09-06

Title: Tools for Working with Posterior Distributions
Description: Provides useful tools for both users and developers of packages for fitting Bayesian models or working with output from Bayesian models. The primary goals of the package are to: (a) Efficiently convert between many different useful formats of draws (samples) from posterior or prior distributions. (b) Provide consistent methods for operations commonly performed on draws, for example, subsetting, binding, or mutating draws. (c) Provide various summaries of draws in convenient formats. (d) Provide lightweight implementations of state of the art posterior inference diagnostics. References: Vehtari et al. (2021) <doi:10.1214/20-BA1221>.
Author: Paul-Christian Buerkner [aut, cre], Jonah Gabry [aut], Matthew Kay [aut], Aki Vehtari [aut], Mans Magnusson [ctb], Rok Česnovar [ctb], Ben Lambert [ctb], Ozan Adiguezel [ctb], Jacob Socolar [ctb]
Maintainer: Paul-Christian Buerkner <paul.buerkner@gmail.com>

Diff between posterior versions 1.3.1 dated 2022-09-06 and 1.4.0 dated 2023-02-22

 DESCRIPTION                                       |   18 
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 71 files changed, 2996 insertions(+), 778 deletions(-)

More information about posterior at CRAN
Permanent link

Package parsel updated to version 0.3.0 with previous version 0.2.1 dated 2022-08-15

Title: Parallel Dynamic Web-Scraping Using 'RSelenium'
Description: A system to increase the efficiency of dynamic web-scraping with 'RSelenium' by leveraging parallel processing. You provide a function wrapper for your 'RSelenium' scraping routine with a set of inputs, and 'parsel' runs it in several browser instances. Chunked input processing as well as error catching and logging ensures seamless execution and minimal data loss, even when unforeseen 'RSelenium' errors occur. You can additionally build safe scraping functions with minimal coding by utilizing constructor functions that act as wrappers around 'RSelenium' methods.
Author: Till Tietz [cre, aut]
Maintainer: Till Tietz <ttietz2014@gmail.com>

Diff between parsel versions 0.2.1 dated 2022-08-15 and 0.3.0 dated 2023-02-22

 DESCRIPTION                                    |   12 
 LICENSE                                        |    4 
 MD5                                            |   58 -
 NAMESPACE                                      |    8 
 NEWS.md                                        |   36 -
 R/close_rselenium.R                            |   26 
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More information about parsel at CRAN
Permanent link

Package SDGdetector updated to version 2.7.1 with previous version 2.7 dated 2023-01-10

Title: Detect SDGs and Targets in Text
Description: Identify 17 Sustainable Development Goals and associated 169 targets in text.
Author: Yingjie Li [aut, cre] , Yongze Song [aut] , Veronica Frans [aut], Meng Cai [aut], Yuqian Zhang [aut], Jianguo Liu [aut]
Maintainer: Yingjie Li <yingjieli.edu@gmail.com>

Diff between SDGdetector versions 2.7 dated 2023-01-10 and 2.7.1 dated 2023-02-22

 DESCRIPTION                       |   38 ++++++++++++-------------
 MD5                               |   57 ++++++++++++++++++++++++++++++++------
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Permanent link

Package gh updated to version 1.4.0 with previous version 1.3.1 dated 2022-09-08

Title: 'GitHub' 'API'
Description: Minimal client to access the 'GitHub' 'API'.
Author: Gabor Csardi [cre, ctb], Jennifer Bryan [aut], Hadley Wickham [aut], RStudio [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>

Diff between gh versions 1.3.1 dated 2022-09-08 and 1.4.0 dated 2023-02-22

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 gh-1.4.0/gh/NAMESPACE                                     |   14 -
 gh-1.4.0/gh/NEWS.md                                       |   21 +
 gh-1.4.0/gh/R/gh-package.R                                |    5 
 gh-1.4.0/gh/R/gh.R                                        |  150 +++++++++++---
 gh-1.4.0/gh/R/gh_rate_limit.R                             |   33 ++-
 gh-1.4.0/gh/R/gh_request.R                                |   53 ++--
 gh-1.4.0/gh/R/gh_response.R                               |   78 ++-----
 gh-1.4.0/gh/R/gh_token.R                                  |    9 
 gh-1.4.0/gh/R/pagination.R                                |   10 
 gh-1.4.0/gh/R/print.R                                     |    4 
 gh-1.4.0/gh/R/utils.R                                     |    4 
 gh-1.4.0/gh/README.md                                     |   58 ++---
 gh-1.4.0/gh/build/vignette.rds                            |binary
 gh-1.4.0/gh/inst/WORDLIST                                 |    1 
 gh-1.4.0/gh/inst/doc/managing-personal-access-tokens.html |  111 +++++-----
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More information about gh at CRAN
Permanent link

Package cvam updated to version 0.9.3 with previous version 0.9.2 dated 2021-10-18

Title: Coarsened Variable Modeling
Description: Extends R's implementation of categorical variables (factors) to handle coarsened observations; implements log-linear models for coarsened categorical data, including latent-class models. Detailed information and examples are provided in the package vignettes.
Author: Joseph L. Schafer <Joseph.L.Schafer@census.gov>
Maintainer: Joseph L. Schafer <Joseph.L.Schafer@census.gov>

Diff between cvam versions 0.9.2 dated 2021-10-18 and 0.9.3 dated 2023-02-22

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 43 files changed, 18426 insertions(+), 15481 deletions(-)

More information about cvam at CRAN
Permanent link

Package RcppArmadillo updated to version 0.12.0.1.0 with previous version 0.11.4.4.0 dated 2023-02-10

Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad Sanderson) that aims towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries. The 'RcppArmadillo' package includes the header files from the templated 'Armadillo' library. Thus users do not need to install 'Armadillo' itself in order to use 'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is licensed under Apache License 2; previous releases were under licensed as MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that; 'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Dirk Eddelbuettel, Romain Francois, Doug Bates, Binxiang Ni, and Conrad Sanderson
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RcppArmadillo versions 0.11.4.4.0 dated 2023-02-10 and 0.12.0.1.0 dated 2023-02-22

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 RcppArmadillo-0.12.0.1.0/RcppArmadillo/configure                                                |   18 
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 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/Base_bones.hpp               |   68 +-
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 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/CubeToMatOp_meat.hpp         |    4 
 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/Cube_bones.hpp               |  108 +--
 RcppArmadillo-0.12.0.1.0/RcppArmadillo/inst/include/armadillo_bits/Cube_meat.hpp                |   70 --
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More information about RcppArmadillo at CRAN
Permanent link

Package kalmanfilter updated to version 2.0.1 with previous version 2.0.0 dated 2022-09-21

Title: Kalman Filter
Description: 'Rcpp' implementation of the multivariate Kalman filter for state space models that can handle missing values and exogenous data in the observation and state equations. Kim, Chang-Jin and Charles R. Nelson (1999) "State-Space Models with Regime Switching: Classical and Gibbs-Sampling Approaches with Applications" <doi:10.7551/mitpress/6444.001.0001><http://econ.korea.ac.kr/~cjkim/>.
Author: Alex Hubbard [aut, cre]
Maintainer: Alex Hubbard <hubbard.alex@gmail.com>

Diff between kalmanfilter versions 2.0.0 dated 2022-09-21 and 2.0.1 dated 2023-02-22

 DESCRIPTION                         |    8 +-
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More information about kalmanfilter at CRAN
Permanent link

Package exiftoolr updated to version 0.2.2 with previous version 0.2.0 dated 2022-10-04

Title: ExifTool Functionality from R
Description: Reads, writes, and edits EXIF and other file metadata using ExifTool <https://exiftool.org/>, returning read results as a data frame. ExifTool supports many different metadata formats including EXIF, GPS, IPTC, XMP, JFIF, GeoTIFF, ICC Profile, Photoshop IRB, FlashPix, AFCP and ID3, Lyrics3, as well as the maker notes of many digital cameras by Canon, Casio, DJI, FLIR, FujiFilm, GE, GoPro, HP, JVC/Victor, Kodak, Leaf, Minolta/Konica-Minolta, Motorola, Nikon, Nintendo, Olympus/Epson, Panasonic/Leica, Pentax/Asahi, Phase One, Reconyx, Ricoh, Samsung, Sanyo, Sigma/Foveon and Sony.
Author: Joshua O'Brien [aut, cre]
Maintainer: Joshua O'Brien <joshmobrien@gmail.com>

Diff between exiftoolr versions 0.2.0 dated 2022-10-04 and 0.2.2 dated 2023-02-22

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More information about exiftoolr at CRAN
Permanent link

Package dbGaPCheckup updated to version 1.0.2 with previous version 1.0.1 dated 2022-12-22

Title: dbGaP Checkup
Description: Contains functions that check for formatting of the Subject Phenotype data set and data dictionary as specified by the National Center for Biotechnology Information (NCBI) Database of Genotypes and Phenotypes (dbGaP) <https://www.ncbi.nlm.nih.gov/gap/docs/submissionguide/>.
Author: Lacey W. Heinsberg [aut, cre], Daniel E. Weeks [aut], University of Pittsburgh [cph]
Maintainer: Lacey W. Heinsberg <law145@pitt.edu>

Diff between dbGaPCheckup versions 1.0.1 dated 2022-12-22 and 1.0.2 dated 2023-02-22

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Package rsdNE updated to version 1.1.0 with previous version 1.0.0 dated 2022-01-05

Title: Response Surface Designs with Neighbour Effects (rsdNE)
Description: Response surface designs with neighbour effects are suitable for experimental situations where it is expected that the treatment combination administered to one experimental unit may affect the response on neighboring units as well as the response on the unit to which it is applied. Integrating these effects in the response surface model improves the experiment's precision (Jaggi, S., Sarika and Sharma, V.K. (2010)<http://krishi.icar.gov.in/jspui/handle/123456789/4364>; Verma A., Jaggi S., Varghese, E.,Varghese, C.,Bhowmik, A., Datta, A. and Hemavathi M. (2021)<DOI: 10.1080/03610918.2021.1890123>). This package includes sym(), asym1(), asym2() functions that generates response surface designs which are rotatable under a polynomial model of a given order without interaction term incorporating neighbour effects.
Author: Ashutosh Dalal [aut, cre], Seema Jaggi [aut, ctb], Eldho Varghese [aut, ctb], Subhasish Sarkar [aut], Arpan Bhowmik [aut], Cini Varghese [aut], Anindita Datta [aut], Soumen Pal [aut]
Maintainer: Ashutosh Dalal <ashutosh.dalal97@gmail.com>

Diff between rsdNE versions 1.0.0 dated 2022-01-05 and 1.1.0 dated 2023-02-22

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Package kimfilter updated to version 1.0.1 with previous version 1.0.0 dated 2022-09-14

Title: Kim Filter
Description: 'Rcpp' implementation of the multivariate Kim filter, which combines the Kalman and Hamilton filters for state probability inference. The filter is designed for state space models and can handle missing values and exogenous data in the observation and state equations. Kim, Chang-Jin and Charles R. Nelson (1999) "State-Space Models with Regime Switching: Classical and Gibbs-Sampling Approaches with Applications" <doi:10.7551/mitpress/6444.001.0001><http://econ.korea.ac.kr/~cjkim/>.
Author: Alex Hubbard [aut, cre]
Maintainer: Alex Hubbard <hubbard.alex@gmail.com>

Diff between kimfilter versions 1.0.0 dated 2022-09-14 and 1.0.1 dated 2023-02-22

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More information about kimfilter at CRAN
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Package MultiscaleDTM updated to version 0.6.0 with previous version 0.5.5 dated 2023-01-30

Title: Multi-Scale Geomorphometric Terrain Attributes
Description: Calculates multi-scale geomorphometric terrain attributes from regularly gridded digital terrain models using a variable focal windows size (Misiuk et al. (2021) <doi:10.1080/01490419.2021.1925789>; Wilson et al. (2007) <doi:10.1080/01490410701295962>; Wood (1996) <https://hdl.handle.net/2381/34503>).
Author: Alexander Ilich [aut, cre] , Vincent Lecours [aut], Benjamin Misiuk [aut], Steven Murawski [aut]
Maintainer: Alexander Ilich <ailich@usf.edu>

Diff between MultiscaleDTM versions 0.5.5 dated 2023-01-30 and 0.6.0 dated 2023-02-22

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More information about MultiscaleDTM at CRAN
Permanent link

New package mully with initial version 2.1.38
Package: mully
Title: Create, Modify and Visualize Multi-Layered Networks
Version: 2.1.38
Maintainer: Zaynab Hammoud <zaynabhassanhammoud@gmail.com>
Description: Allows the user to create graphs with multiple layers. The user can also modify the layers, the nodes, and the edges. The graph can also be visualized. Zaynab Hammoud and Frank Kramer (2018) <doi:10.3390/genes9110519>. More about multilayered graphs and their usage can be found in our review paper: Zaynab Hammoud and Frank Kramer (2020) <doi:10.1186/s41044-020-00046-0>.
URL: https://github.com/frankkramer-lab/mully
BugReports: https://github.com/frankkramer-lab/mully/issues
License: GPL (>= 2)
Encoding: UTF-8
Imports: igraph (>= 1.3.5.9097), rgl (>= 1.0.0), randomcoloR, graphics, stats
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2023-02-22 11:20:52 UTC; Administrator
Author: Zaynab Hammoud [aut, cre]
Repository: CRAN
Date/Publication: 2023-02-22 17:00:03 UTC

More information about mully at CRAN
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Package CRTSize updated to version 1.2 with previous version 1.1 dated 2022-10-12

Title: Sample Size Estimation Functions for Cluster Randomized Trials
Description: Sample size estimation in cluster (group) randomized trials. Contains traditional power-based methods, empirical smoothing (Rotondi and Donner, 2009), and updated meta-analysis techniques (Rotondi and Donner, 2012).
Author: Michael A Rotondi <mrotondi@yorku.ca>
Maintainer: Michael A Rotondi <mrotondi@yorku.ca>

Diff between CRTSize versions 1.1 dated 2022-10-12 and 1.2 dated 2023-02-22

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New package simdd with initial version 1.1-1
Package: simdd
Title: Simulation of Fisher Bingham and Related Directional Distributions
Version: 1.1-1
Date: 2023-02-19
Description: Simulation methods for the Fisher Bingham distribution on the unit sphere, the matrix Bingham distribution on a Grassmann manifold, the matrix Fisher distribution on SO(3), and the bivariate von Mises sine model on the torus. The methods use the first ever general purpose acceptance/rejection simulation algorithm for the Bingham distribution and are described fully by Kent, Ganeiber and Mardia (2018) <doi:10.1080/10618600.2017.1390468>. These methods superseded earlier MCMC simulation methods and are more general than earlier simulation methods. The methods can be slower in specific situations where there are existing non-MCMC simulation methods (see Section 8 of Kent, Ganeiber and Mardia (2018) <doi:10.1080/10618600.2017.1390468> for further details).
License: GPL-2
Suggests: CircStats
NeedsCompilation: no
Packaged: 2023-02-21 22:27:50 UTC; kassel
Author: John Kent [aut, cph], Kassel Liam Hingee [cre]
Maintainer: Kassel Liam Hingee <kassel.hingee@anu.edu.au>
Repository: CRAN
Date/Publication: 2023-02-22 15:10:02 UTC

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New package setartree with initial version 0.1.0
Package: setartree
Title: SETAR-Tree: A Novel and Accurate Tree Algorithm for Global Time Series Forecasting
Version: 0.1.0
Maintainer: Rakshitha Godahewa <rakshithagw@gmail.com>
Description: The implementation of a forecasting-specific tree-based model that is in particular suitable for global time series forecasting, as proposed in Godahewa et al. (2022) <arXiv:2211.08661v1>. The model uses the concept of Self Exciting Threshold Autoregressive (SETAR) models to define the node splits and thus, the model is named SETAR-Tree. The SETAR-Tree uses some time-series-specific splitting and stopping procedures. It trains global pooled regression models in the leaves allowing the models to learn cross-series information. The depth of the tree is controlled by conducting a statistical linearity test as well as measuring the error reduction percentage at each node split. Thus, the SETAR-Tree requires minimal external hyperparameter tuning and provides competitive results under its default configuration. A forest is developed by extending the SETAR-Tree. The SETAR-Forest combines the forecasts provided by a collection of diverse SETAR-Trees during the forecasting process.
License: MIT + file LICENSE
URL: https://github.com/rakshitha123/SETAR_Trees
BugReports: https://github.com/rakshitha123/SETAR_Trees/issues
Depends: R (>= 3.5.0)
Imports: stats, utils, methods, generics (>= 0.1.2)
Suggests: forecast
Encoding: UTF-8
LazyData: true
NeedsCompilation: no
Packaged: 2023-02-22 02:30:39 UTC; raks0002
Author: Rakshitha Godahewa [cre, aut, cph], Christoph Bergmeir [aut], Daniel Schmidt [aut], Geoffrey Webb [ctb]
Repository: CRAN
Date/Publication: 2023-02-22 15:10:05 UTC

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Package pda updated to version 1.2.5 with previous version 1.0-2 dated 2020-12-10

Title: Privacy-Preserving Distributed Algorithms
Description: A collection of privacy-preserving distributed algorithms for conducting multi-site data analyses. The regression analyses can be linear regression for continuous outcome, logistic regression for binary outcome, Cox proportional hazard regression for time-to event outcome, Poisson regression for count outcome, or multi-categorical regression for nominal or ordinal outcome. The PDA algorithm runs on a lead site and only requires summary statistics from collaborating sites, with one or few iterations. The package can be used together with the online system (<https://pda-ota.pdamethods.org/>) for safe and convenient collaboration. For more information, please visit our software websites: <https://github.com/Penncil/pda>, and <https://pdamethods.org/>.
Author: Chongliang Luo [aut], Rui Duan [aut], Mackenzie Edmondson [aut], Jiayi Tong [aut], Xiaokang Liu [aut], Kenneth Locke [aut], Jiajie Chen [cre], Yong Chen [aut], Penn Computing Inference Learning lab [cph]
Maintainer: Jiajie Chen <jiajie.chen@pennmedicine.upenn.edu>

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Package mistr updated to version 0.0.6 with previous version 0.0.5 dated 2021-12-18

Title: Mixture and Composite Distributions
Description: A flexible computational framework for mixture distributions with the focus on the composite models.
Author: Lukas Sablica [aut, cre] , Kurt Hornik [aut]
Maintainer: Lukas Sablica <lsablica@wu.ac.at>

Diff between mistr versions 0.0.5 dated 2021-12-18 and 0.0.6 dated 2023-02-22

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Package hyd1d updated to version 0.4.2 with previous version 0.4.1 dated 2023-01-09

Title: 1d Water Level Interpolation along the Rivers Elbe and Rhine
Description: An S4 class and several functions which utilize internally stored datasets and gauging data enable 1d water level interpolation. The S4 class (WaterLevelDataFrame) structures the computation and visualisation of 1d water level information along the German federal waterways Elbe and Rhine. 'hyd1d' delivers 1d water level data - extracted from the 'FLYS' database - and validated gauging data - extracted from the hydrological database 'HyDaBa' - package-internally. For computations near real time gauging data are queried externally from the 'PEGELONLINE REST API' <https://pegelonline.wsv.de/webservice/dokuRestapi>.
Author: Arnd Weber [aut, cre] , Marcus Hatz [aut], Wolfgang Stuermer [ctb], Wilfried Wiechmann [ctb]
Maintainer: Arnd Weber <arnd.weber@bafg.de>

Diff between hyd1d versions 0.4.1 dated 2023-01-09 and 0.4.2 dated 2023-02-22

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New package GRelevance with initial version 1.0
Package: GRelevance
Title: Graph-Based k-Sample Comparisons and Relevance Analysis in High Dimensions
Version: 1.0
Imports: mvtnorm,MASS,philentropy
Description: We propose two distribution-free test statistics based on between-sample edge counts and measure the degree of relevance by standardized counts. Users can set edge costs in the graph to compare the parameters of the distributions. Methods for comparing distributions are as described in: Xiaoping Shi (2021) <arXiv:2107.00728>.
Encoding: UTF-8
Depends: R (>= 2.10)
License: MIT + file LICENSE
NeedsCompilation: no
Packaged: 2023-02-22 03:27:49 UTC; xshi
Author: Xiaoping Shi [aut, cre]
Maintainer: Xiaoping Shi <xiaoping.shi@ubc.ca>
Repository: CRAN
Date/Publication: 2023-02-22 15:10:12 UTC

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New package expowo with initial version 1.0
Package: expowo
Title: Data Mining of Plant Diversity and Distribution for R
Version: 1.0
Maintainer: Debora Zuanny <deborazuanny@gmail.com>
Description: Produces diversity estimates and species lists with associated global distribution for any angiosperm family and genus from 'Plants of the World Online' database <https://powo.science.kew.org/>, by interacting with the source code of each plant taxon page, and creates global maps of species richness.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5.0)
Imports: RColorBrewer, dplyr, magrittr, data.table, ggplot2, rnaturalearth, sp, sf, utils
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
URL: https://dboslab.github.io/expowo/, https://github.com/dboslab/expowo
BugReports: https://github.com/DBOSlab/expowo/issues
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2023-02-22 02:06:06 UTC; Domingos
Author: Debora Zuanny [aut, cre, cph] , Domingos Cardoso [aut, ctb, cph]
Repository: CRAN
Date/Publication: 2023-02-22 15:10:08 UTC

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Package clarify updated to version 0.1.2 with previous version 0.1.1 dated 2023-02-03

Title: Simulation-Based Inference for Regression Models
Description: Performs simulation-based inference as an alternative to the delta method for obtaining valid confidence intervals and p-values for regression post-estimation quantities, such as average marginal effects and predictions at representative values. This framework for simulation-based inference is especially useful when the resulting quantity is not normally distributed and the delta method approximation fails. The methodology is described in King, Tomz, and Wittenberg (2000) <doi:10.2307/2669316>. 'clarify' is meant to replace some of the functionality of the archived package 'Zelig'; see the vignette "Translating Zelig to clarify" for replicating this functionality.
Author: Noah Greifer [aut, cre] , Steven Worthington [aut] , Stefano Iacus [aut] , Gary King [aut]
Maintainer: Noah Greifer <ngreifer@iq.harvard.edu>

Diff between clarify versions 0.1.1 dated 2023-02-03 and 0.1.2 dated 2023-02-22

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New package xmpdf with initial version 0.1.1
Encoding: UTF-8
Package: xmpdf
Title: Edit 'XMP' Metadata and 'PDF' Bookmarks and Documentation Info
Version: 0.1.1
Description: Edit 'XMP' metadata <https://en.wikipedia.org/wiki/Extensible_Metadata_Platform> in a variety of media file formats as well as edit bookmarks (aka outline aka table of contents) and documentation info entries in 'pdf' files. Can detect and use a variety of command-line tools to perform these operations such as 'exiftool' <https://exiftool.org/>, 'ghostscript' <https://www.ghostscript.com/>, and/or 'pdftk' <https://gitlab.com/pdftk-java/pdftk>.
License: GPL (>= 3)
URL: https://trevorldavis.com/R/xmpdf/dev/
BugReports: https://github.com/trevorld/r-xmpdf/issues
LazyData: true
LazyLoad: yes
Imports: datetimeoffset (>= 0.2.1), grDevices, jsonlite, purrr, R6, rlang, tools, utils
Suggests: exiftoolr, grid, knitr, qpdf, pdftools, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr, rmarkdown
SystemRequirements: 'ghostscript' or 'pdftk' for editing pdf bookmarks and/or documentation info entries. 'exiftool' for editing pdf documentation info entries and/or xmp metadata.
NeedsCompilation: no
Packaged: 2023-02-21 01:45:36 UTC; trevorld
Author: Trevor L Davis [aut, cre] , W. Trevor King Some pdf code adapted from 'pdf-merge.py' [ctb], Linux Foundation [dtc]
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>
Depends: R (>= 2.10)
Repository: CRAN
Date/Publication: 2023-02-22 14:40:02 UTC

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New package tseriesTARMA with initial version 0.3-1
Package: tseriesTARMA
Title: Analysis of Nonlinear Time Series Through TARMA Models
Version: 0.3-1
Depends: R (>= 3.5.0)
Suggests: knitr, rmarkdown
LazyData: yes
LazyLoad: yes
Encoding: UTF-8
NeedsCompilation: yes
Imports: methods, stats, Rsolnp, lbfgsb3c, Matrix, Rdpack, mathjaxr, rugarch
Description: Routines for nonlinear time series analysis based on Threshold Autoregressive Moving Average models. It provides functions and methods for: TARMA model fitting and forecasting, tests for threshold effects, unit-root tests based on TARMA models.
Maintainer: Simone Giannerini <simone.giannerini@unibo.it>
License: GPL (>= 2)
Packaged: 2023-02-20 20:02:46 UTC; Simone
Author: Simone Giannerini [aut, cre] , Greta Goracci [aut]
Repository: CRAN
Date/Publication: 2023-02-22 14:30:02 UTC

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New package SLCARE with initial version 1.0.0
Package: SLCARE
Title: Semiparametric Latent Class Analysis for Recurrent Event
Version: 1.0.0
Maintainer: Qi Yu <qi.yu2@emory.edu>
Description: An easy-to-use tool for latent class analysis for recurrent events. The modeling framework is based on the semiparametric multiplicative modeling in Zhao et al. (2022) <doi:10.1111/rssb.12499>. Our package provides an alternative method to define initial values in the estimation algorithm based on a joint frailty scale-change model described in Wang et al. (2001) <doi:10.1198/016214501753209031> and K-means. Users are also allowed to specify different initial values by themselves. Our package also provides an alternative algorithm to solving the estimating equation for unobservable latent class membership by fitting a "pseudo" weighted multinomial regression which speeds up the rate of convergence.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
URL: https://github.com/qyxxx/SLCARE, http://www.metaknight.us/SLCARE/
BugReports: https://github.com/qyxxx/SLCARE/issues
Imports: dplyr, tidyr, ggplot2, reReg, nnet
Suggests: knitr, rmarkdown
NeedsCompilation: no
Packaged: 2023-02-20 19:47:41 UTC; qiyu
Author: Qi Yu [aut, cre], Limin Peng [aut]
Depends: R (>= 3.5.0)
Repository: CRAN
Date/Publication: 2023-02-22 14:20:12 UTC

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New package SIPETool with initial version 0.1.0
Package: SIPETool
Title: SIFT-MS and CPET Data Processor
Version: 0.1.0
Author: Federico Vivaldi; Tommaso Lomonaco
Maintainer: Federico Vivaldi <federico-vivaldi@virgilio.it>
Description: Processor for selected ion flow tube mass spectrometer (SIFT-MS) output file from breath analysis. It allows the filtering of the SIFT output file (i.e., variation over time of the target analyte concentration) and the following analysis for the determination of: maximum, average, and standard deviation value of target concentration measured at each exhalation, and the respiratory rate over the measurement. Additionally, it is possible to align the SIFT-MS data with other on-line techniques such as cardio pulmonary exercise test (CPET) for a comprehensive characterization of breath samples.
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: Convolutioner
NeedsCompilation: no
Packaged: 2023-02-21 14:13:47 UTC; federico
Depends: R (>= 3.5.0)
Repository: CRAN
Date/Publication: 2023-02-22 14:50:07 UTC

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New package Ricrt with initial version 0.1.0
Package: Ricrt
Title: Randomization Inference of Clustered Randomized Trials
Version: 0.1.0
Description: Methods for randomization inference in group-randomized trials. Specifically, it can be used to analyze the treatment effect of stratified data with multiple clusters in each stratum with treatment given on cluster level. User may also input as many covariates as they want to fit the data. Methods are described by Dylan S Small et al., (2012) <doi:10.1198/016214507000000897>.
License: MIT + file LICENSE
Imports: dplyr, randomForest, tidyverse, stats, SuperLearner, glmnet, rlang, Rdpack
Encoding: UTF-8
LazyData: true
Depends: R (>= 2.10)
NeedsCompilation: no
Packaged: 2023-02-21 04:21:35 UTC; flankado
Author: Yang Dong [aut, cph, cre], Bingkai Wang [aut, cph], Dylan Small [aut, cph]
Maintainer: Yang Dong <flankado@sas.upenn.edu>
Repository: CRAN
Date/Publication: 2023-02-22 14:40:09 UTC

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Package pivmet updated to version 0.5.0 with previous version 0.4.0 dated 2021-04-30

Title: Pivotal Methods for Bayesian Relabelling and k-Means Clustering
Description: Collection of pivotal algorithms for: relabelling the MCMC chains in order to undo the label switching problem in Bayesian mixture models; fitting sparse finite mixtures; initializing the centers of the classical k-means algorithm in order to obtain a better clustering solution. For further details see Egidi, Pappadà, Pauli and Torelli (2018b)<ISBN:9788891910233>.
Author: Leonardo Egidi[aut, cre], Roberta Pappada[aut], Francesco Pauli[aut], Nicola Torelli[aut]
Maintainer: Leonardo Egidi <legidi@units.it>

Diff between pivmet versions 0.4.0 dated 2021-04-30 and 0.5.0 dated 2023-02-22

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New package ohsome with initial version 0.2.1
Package: ohsome
Title: An 'ohsome API' Client
Version: 0.2.1
Description: A client that grants access to the power of the 'ohsome API' from R. It lets you analyze the rich data source of the 'OpenStreetMap (OSM)' history. You can retrieve the geometry of 'OSM' data at specific points in time, and you can get aggregated statistics on the evolution of 'OSM' elements and specify your own temporal, spatial and/or thematic filters.
License: LGPL (>= 3)
URL: https://github.com/GIScience/ohsome-r,https://docs.ohsome.org/ohsome-api/stable/
BugReports: https://github.com/GIScience/ohsome-r/issues
Depends: R (>= 2.10)
Imports: geojsonsf, httr, jsonlite, readr, sf, utils
Suggests: dplyr, ggplot2, httptest, janitor, knitr, mapview, nominatimlite, osmdata, rmarkdown, spelling, testthat (>= 3.0.0), tmaptools, tidyr
VignetteBuilder: knitr
Encoding: UTF-8
Language: en-US
LazyData: true
NeedsCompilation: no
Packaged: 2023-02-21 13:46:07 UTC; ofritz
Author: Heidelberg Institute for Geoinformation Technology gGmbH [cph], Oliver Fritz [aut, cre]
Maintainer: Oliver Fritz <oliver.fritz@heigit.org>
Repository: CRAN
Date/Publication: 2023-02-22 14:50:02 UTC

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Package LTASR updated to version 0.1.1 with previous version 0.1.0 dated 2022-10-21

Title: Functions to Replicate the Center for Disease Control and Prevention's 'LTAS' Software in R
Description: A suite of functions for reading in a rate file in XML format, stratify a cohort, and calculate 'SMRs' from the stratified cohort and rate file.
Author: Stephen Bertke [aut, cre]
Maintainer: Stephen Bertke <nioshltas@cdc.gov>

Diff between LTASR versions 0.1.0 dated 2022-10-21 and 0.1.1 dated 2023-02-22

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New package intendo with initial version 0.1
Package: intendo
Title: A Group of Fun Datasets of Various Sizes and Differing Levels of Quality
Version: 0.1
Description: Four datasets are provided here from the 'Intendo' game 'Super Jetroid'. It is data from the 2015 year of operation and it comprises a revenue table ('all_revenue'), a daily users table ('users_daily'), a user summary table ('user_summary'), and a table with data on all user sessions ('all_sessions'). These core datasets come in different sizes, and, each of them has a variant that was intentionally made faulty (totally riddled with errors and inconsistencies). This suite of tables is useful for testing with packages that focus on data validation and data documentation.
License: MIT + file LICENSE
Encoding: UTF-8
Suggests: DBI (>= 1.1.3), dplyr (>= 1.1.0), duckdb (>= 0.7.0), pointblank (>= 0.11.3), testthat, tibble (>= 3.1.8)
Depends: R (>= 3.5)
NeedsCompilation: no
Packaged: 2023-02-20 15:54:48 UTC; rich
Author: Richard Iannone [aut, cre]
Maintainer: Richard Iannone <riannone@me.com>
Repository: CRAN
Date/Publication: 2023-02-22 14:20:06 UTC

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Package HiResTEC updated to version 0.62 with previous version 0.59 dated 2019-06-18

Title: Non-Targeted Fluxomics on High-Resolution Mass-Spectrometry Data
Description: Identifying labeled compounds in a 13C-tracer experiment in non-targeted fashion is a cumbersome process. This package facilitates such type of analyses by providing high level quality control plots, deconvoluting and evaluating spectra and performing a multitude of tests in an automatic fashion. The main idea is to use changing intensity ratios of ion pairs from peak list generated with 'xcms' as candidates and evaluate those against base peak chromatograms and spectra information within the raw measurement data automatically. The functionality is described in Hoffmann et al. (2018) <doi:10.1021/acs.analchem.8b00356>.
Author: Jan Lisec [aut, cre], Friederike Hoffmann [aut]
Maintainer: Jan Lisec <jan.lisec@bam.de>

Diff between HiResTEC versions 0.59 dated 2019-06-18 and 0.62 dated 2023-02-22

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 54 files changed, 1227 insertions(+), 1048 deletions(-)

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New package gto with initial version 0.1.0
Package: gto
Title: Insert 'gt' Tables into Word Documents
Version: 0.1.0
Description: Insert tables created by the 'gt' R package into 'Microsoft Word' documents. This gives users the ability to add to their existing word documents the tables made in 'gt' using the familiar 'officer' package and syntax from the 'officeverse'.
License: Apache License (>= 2)
Encoding: UTF-8
Imports: gt (>= 0.8.0), magrittr, officer, rlang, xml2
Suggests: testthat (>= 3.0.0), dplyr, tibble, covr
NeedsCompilation: no
Packaged: 2023-02-20 17:00:14 UTC; ehh82309
Author: Ellis Hughes [aut, cre] , GlaxoSmithKline Research & Development Limited [cph, fnd]
Maintainer: Ellis Hughes <ellis.h.hughes@gsk.com>
Repository: CRAN
Date/Publication: 2023-02-22 14:20:09 UTC

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New package finbipartite with initial version 0.1.0
Package: finbipartite
Title: Learning Bipartite Graphs: Heavy Tails and Multiple Components
Version: 0.1.0
Date: 2023-02-02
Description: Learning bipartite and k-component bipartite graphs from financial datasets. This package contains implementations of the algorithms described in the paper: Cardoso JVM, Ying J, and Palomar DP (2022). <https://openreview.net/pdf?id=WNSyF9qZaMd> "Learning bipartite graphs: heavy tails and multiple components, Advances in Neural Informations Processing Systems" (NeurIPS).
URL: https://github.com/convexfi/bipartite/
BugReports: https://github.com/convexfi/bipartite/issues
License: GPL-3
Encoding: UTF-8
Depends: spectralGraphTopology, quadprog
Imports: MASS, stats, progress, mvtnorm, CVXR
Suggests: testthat, igraph,
NeedsCompilation: no
Packaged: 2023-02-21 03:43:22 UTC; mirca
Author: Ze Vinicius [cre, aut]
Maintainer: Ze Vinicius <jvmirca@gmail.com>
Repository: CRAN
Date/Publication: 2023-02-22 14:40:06 UTC

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New package DTRKernSmooth with initial version 0.1.0
Package: DTRKernSmooth
Title: Estimate and Make Inference About Optimal Treatment Regimes via Smoothed Methods
Version: 0.1.0
Description: Methods to estimate the optimal treatment regime among all linear regimes via smoothed estimation methods, and construct element-wise confidence intervals for the optimal linear treatment regime vector, as well as the confidence interval for the optimal value via wild bootstrap procedures, if the population follows treatments recommended by the optimal linear regime. See more details in: Wu, Y. and Wang, L. (2021), "Resampling-based Confidence Intervals for Model-free Robust Inference on Optimal Treatment Regimes", Biometrics, 77: 465– 476, <doi:10.1111/biom.13337>.
License: GPL (>= 2)
Encoding: UTF-8
Imports: Rcpp (>= 1.0.9)
LinkingTo: Rcpp,RcppArmadillo,RcppEigen
NeedsCompilation: yes
Packaged: 2023-02-21 14:07:25 UTC; WindyWu
Author: Yunan Wu [aut, cre, cph], Lan Wang [aut]
Maintainer: Yunan Wu <yunan.wu@utdallas.edu>
Repository: CRAN
Date/Publication: 2023-02-22 14:50:10 UTC

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New package dataMojo with initial version 1.0.0
Package: dataMojo
Title: Reshape Data Table
Version: 1.0.0
Description: A grammar of data manipulation with 'data.table', providing a consistent a series of utility functions that help you solve the most common data manipulation challenges.
Suggests: knitr, rmarkdown, testthat, dplyr
VignetteBuilder: knitr
License: MIT + file LICENSE
Imports: data.table
Encoding: UTF-8
LazyData: true
NeedsCompilation: no
Packaged: 2023-02-21 18:19:50 UTC; jienamclellan
Author: Jiena McLellan [aut, cre] , Michael Condouris [ctb] , Brittney Zykan [ctb], Sai Im [ctb]
Maintainer: Jiena McLellan <jienagu90@gmail.com>
Depends: R (>= 3.5.0)
Repository: CRAN
Date/Publication: 2023-02-22 15:00:02 UTC

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Package covid19br (with last version 0.1.4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2022-03-30 0.1.4
2021-10-24 0.1.3

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Package mixbox updated to version 1.2.2 with previous version 1.1.1 dated 2023-01-23

Title: Observed Fisher Information Matrix for Finite Mixture Model
Description: Developed for the following tasks. 1- simulating realizations from the canonical, restricted, and unrestricted finite mixture models. 2- Monte Carlo approximation for density function of the finite mixture models. 3- Monte Carlo approximation for the observed Fisher information matrix, asymptotic standard error, and the corresponding confidence intervals for parameters of the mixture models sing the method proposed by Basford et al. (1997) <https://espace.library.uq.edu.au/view/UQ:57525>.
Author: Mahdi Teimouri [aut, cre, cph, ctb]
Maintainer: Mahdi Teimouri <teimouri@aut.ac.ir>

Diff between mixbox versions 1.1.1 dated 2023-01-23 and 1.2.2 dated 2023-02-22

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Package Anthropometry updated to version 1.19 with previous version 1.18 dated 2023-01-13

Title: Statistical Methods for Anthropometric Data
Description: Statistical methodologies especially developed to analyze anthropometric data. These methods are aimed at providing effective solutions to some commons problems related to Ergonomics and Anthropometry. They are based on clustering, the statistical concept of data depth, statistical shape analysis and archetypal analysis. Please see Vinue (2017) <doi:10.18637/jss.v077.i06>.
Author: Guillermo Vinue, Irene Epifanio, Amelia Simo, M. Victoria Ibanez, Juan Domingo, Guillermo Ayala
Maintainer: Guillermo Vinue <Guillermo.Vinue@uv.es>

Diff between Anthropometry versions 1.18 dated 2023-01-13 and 1.19 dated 2023-02-22

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Package workflows updated to version 1.1.3 with previous version 1.1.2 dated 2022-11-16

Title: Modeling Workflows
Description: Managing both a 'parsnip' model and a preprocessor, such as a model formula or recipe from 'recipes', can often be challenging. The goal of 'workflows' is to streamline this process by bundling the model alongside the preprocessor, all within the same object.
Author: Davis Vaughan [aut], Simon Couch [aut, cre] , RStudio [cph, fnd]
Maintainer: Simon Couch <simonpatrickcouch@gmail.com>

Diff between workflows versions 1.1.2 dated 2022-11-16 and 1.1.3 dated 2023-02-22

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Package tidyverse updated to version 2.0.0 with previous version 1.3.2 dated 2022-07-18

Title: Easily Install and Load the 'Tidyverse'
Description: The 'tidyverse' is a set of packages that work in harmony because they share common data representations and 'API' design. This package is designed to make it easy to install and load multiple 'tidyverse' packages in a single step. Learn more about the 'tidyverse' at <https://www.tidyverse.org>.
Author: Hadley Wickham [aut, cre], RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>

Diff between tidyverse versions 1.3.2 dated 2022-07-18 and 2.0.0 dated 2023-02-22

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Package qs updated to version 0.25.5 with previous version 0.25.4 dated 2022-08-09

Title: Quick Serialization of R Objects
Description: Provides functions for quickly writing and reading any R object to and from disk.
Author: Travers Ching [aut, cre, cph], Yann Collet [ctb, cph] , Facebook, Inc. [cph] , Reichardt Tino [ctb, cph] , Skibinski Przemyslaw [ctb, cph] , Mori Yuta [ctb, cph] , Romain Francois [ctb, cph] , Francesc Alted [ctb, cph] , Bryce Chamberlain [ctb] , Sal [...truncated...]
Maintainer: Travers Ching <traversc@gmail.com>

Diff between qs versions 0.25.4 dated 2022-08-09 and 0.25.5 dated 2023-02-22

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Package ggalluvial updated to version 0.12.5 with previous version 0.12.4 dated 2023-02-03

Title: Alluvial Plots in 'ggplot2'
Description: Alluvial plots use variable-width ribbons and stacked bar plots to represent multi-dimensional or repeated-measures data with categorical or ordinal variables; see Riehmann, Hanfler, and Froehlich (2005) <doi:10.1109/INFVIS.2005.1532152> and Rosvall and Bergstrom (2010) <doi:10.1371/journal.pone.0008694>. Alluvial plots are statistical graphics in the sense of Wilkinson (2006) <doi:10.1007/0-387-28695-0>; they share elements with Sankey diagrams and parallel sets plots but are uniquely determined from the data and a small set of parameters. This package extends Wickham's (2010) <doi:10.1198/jcgs.2009.07098> layered grammar of graphics to generate alluvial plots from tidy data.
Author: Jason Cory Brunson [aut, cre], Quentin D. Read [aut]
Maintainer: Jason Cory Brunson <cornelioid@gmail.com>

Diff between ggalluvial versions 0.12.4 dated 2023-02-03 and 0.12.5 dated 2023-02-22

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Package cder updated to version 0.3-1 with previous version 0.3-0 dated 2023-02-12

Title: Interface to the California Data Exchange Center (CDEC)
Description: Connect to the California Data Exchange Center (CDEC) Web Service <http://cdec.water.ca.gov/>. 'CDEC' provides a centralized database to store, process, and exchange real-time hydrologic information gathered by various cooperators throughout California. The 'CDEC' Web Service <http://cdec.water.ca.gov/dynamicapp/wsSensorData> provides a data download service for accessing historical records.
Author: Michael Koohafkan [aut, cre]
Maintainer: Michael Koohafkan <michael.koohafkan@gmail.com>

Diff between cder versions 0.3-0 dated 2023-02-12 and 0.3-1 dated 2023-02-22

 DESCRIPTION                 |    6 +++---
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 6 files changed, 24 insertions(+), 16 deletions(-)

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Package ttdo updated to version 0.0.9 with previous version 0.0.8 dated 2021-07-17

Title: Extend 'tinytest' with 'diffobj'
Description: The 'tinytest' package offers a light-weight zero-dependency unit-testing framework to which this package adds support of the 'diffobj' package for 'diff'-style comparison of R objects.
Author: Dirk Eddelbuettel and Alton Barbehenn
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between ttdo versions 0.0.8 dated 2021-07-17 and 0.0.9 dated 2023-02-22

 ChangeLog                             |   14 ++++++++++++++
 DESCRIPTION                           |   10 +++++-----
 MD5                                   |   12 ++++++------
 R/expectations_xl.R                   |    2 ++
 README.md                             |    1 -
 inst/NEWS.Rd                          |    8 ++++++++
 man/ttdo_boolean_and_message_tests.Rd |    5 +++++
 7 files changed, 40 insertions(+), 12 deletions(-)

More information about ttdo at CRAN
Permanent link

New package MortalityLaws with initial version 1.9.9
Package: MortalityLaws
Title: Parametric Mortality Models, Life Tables and HMD
Version: 1.9.9
Maintainer: Marius D. Pascariu <mpascariu@outlook.com>
Description: Fit the most popular human mortality 'laws', and construct full and abridge life tables given various input indices. A mortality law is a parametric function that describes the dying-out process of individuals in a population during a significant portion of their life spans. For a comprehensive review of the most important mortality laws see Tabeau (2001) <doi:10.1007/0-306-47562-6_1>. Practical functions for downloading data from various human mortality databases are provided as well.
License: MIT + file LICENSE
LazyData: TRUE
Depends: R (>= 3.0.0)
Imports: minpack.lm (>= 1.2), RCurl (>= 1.95), pbapply (>= 1.3-4), tidyr (>= 0.8.1)
Suggests: testthat, knitr, rmarkdown
URL: https://github.com/mpascariu/MortalityLaws
BugReports: https://github.com/mpascariu/MortalityLaws/issues
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2023-02-21 17:29:43 UTC; mpascariu
Author: Marius D. Pascariu [aut, cre, cph] , Vladimir Canudas-Romo [ctb]
Repository: CRAN
Date/Publication: 2023-02-22 09:00:11 UTC

More information about MortalityLaws at CRAN
Permanent link

Package marginaleffects updated to version 0.10.0 with previous version 0.9.0 dated 2023-02-01

Title: Predictions, Comparisons, Slopes, Marginal Means, and Hypothesis Tests
Description: Compute and plot predictions, slopes, marginal means, and comparisons (contrasts, risk ratios, odds, etc.) for over 70 classes of statistical models in R. Conduct linear and non-linear hypothesis tests, or equivalence tests. Calculate uncertainty estimates using the delta method, bootstrapping, or simulation-based inference.
Author: Vincent Arel-Bundock [aut, cre, cph] , Marcio Augusto Diniz [ctb] , Noah Greifer [ctb] , Etienne Bacher [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>

Diff between marginaleffects versions 0.9.0 dated 2023-02-01 and 0.10.0 dated 2023-02-22

 marginaleffects-0.10.0/marginaleffects/DESCRIPTION                                                           |   56 -
 marginaleffects-0.10.0/marginaleffects/MD5                                                                   |  455 +++++-----
 marginaleffects-0.10.0/marginaleffects/NAMESPACE                                                             |   11 
 marginaleffects-0.10.0/marginaleffects/NEWS.md                                                               |   50 +
 marginaleffects-0.10.0/marginaleffects/R/bootstrap_boot.R                                                    |    2 
 marginaleffects-0.10.0/marginaleffects/R/bootstrap_fwb.R                                                     |    2 
 marginaleffects-0.10.0/marginaleffects/R/bootstrap_rsample.R                                                 |    2 
 marginaleffects-0.10.0/marginaleffects/R/broom.R                                                             |   10 
 marginaleffects-0.10.0/marginaleffects/R/by.R                                                                |    2 
 marginaleffects-0.10.0/marginaleffects/R/ci.R                                                                |   21 
 marginaleffects-0.10.0/marginaleffects/R/comparisons.R                                                       |  184 ++--
 marginaleffects-0.10.0/marginaleffects/R/complete_levels.R                                                   |   11 
 marginaleffects-0.10.0/marginaleffects/R/datagrid.R                                                          |   52 -
 marginaleffects-0.10.0/marginaleffects/R/equivalence.R                                                       |    7 
 marginaleffects-0.10.0/marginaleffects/R/get_contrast_data.R                                                 |   42 
 marginaleffects-0.10.0/marginaleffects/R/get_contrast_data_character.R                                       |    7 
 marginaleffects-0.10.0/marginaleffects/R/get_contrast_data_factor.R                                          |   30 
 marginaleffects-0.10.0/marginaleffects/R/get_contrast_data_numeric.R                                         |   21 
 marginaleffects-0.10.0/marginaleffects/R/get_contrasts.R                                                     |   94 +-
 marginaleffects-0.10.0/marginaleffects/R/get_hypothesis.R                                                    |   15 
 marginaleffects-0.10.0/marginaleffects/R/get_jacobian.R                                                      |   67 +
 marginaleffects-0.10.0/marginaleffects/R/get_modeldata.R                                                     |   36 
 marginaleffects-0.10.0/marginaleffects/R/get_predict.R                                                       |  114 --
 marginaleffects-0.10.0/marginaleffects/R/get_se_delta.R                                                      |   12 
 marginaleffects-0.10.0/marginaleffects/R/hypotheses.R                                                        |   48 -
 marginaleffects-0.10.0/marginaleffects/R/imputation.R                                                        |only
 marginaleffects-0.10.0/marginaleffects/R/inferences.R                                                        |   25 
 marginaleffects-0.10.0/marginaleffects/R/marginal_means.R                                                    |only
 marginaleffects-0.10.0/marginaleffects/R/methods_MASS.R                                                      |    9 
 marginaleffects-0.10.0/marginaleffects/R/methods_MCMCglmm.R                                                  |only
 marginaleffects-0.10.0/marginaleffects/R/methods_Rchoice.R                                                   |only
 marginaleffects-0.10.0/marginaleffects/R/methods_aod.R                                                       |    4 
 marginaleffects-0.10.0/marginaleffects/R/methods_bife.R                                                      |    4 
 marginaleffects-0.10.0/marginaleffects/R/methods_biglm.R                                                     |    2 
 marginaleffects-0.10.0/marginaleffects/R/methods_brms.R                                                      |   10 
 marginaleffects-0.10.0/marginaleffects/R/methods_crch.R                                                      |    5 
 marginaleffects-0.10.0/marginaleffects/R/methods_fixest.R                                                    |  111 --
 marginaleffects-0.10.0/marginaleffects/R/methods_gamlss.R                                                    |    4 
 marginaleffects-0.10.0/marginaleffects/R/methods_glmmTMB.R                                                   |    9 
 marginaleffects-0.10.0/marginaleffects/R/methods_inferences_simulation.R                                     |    4 
 marginaleffects-0.10.0/marginaleffects/R/methods_lme4.R                                                      |    4 
 marginaleffects-0.10.0/marginaleffects/R/methods_mclogit.R                                                   |    8 
 marginaleffects-0.10.0/marginaleffects/R/methods_mhurdle.R                                                   |    2 
 marginaleffects-0.10.0/marginaleffects/R/methods_nnet.R                                                      |    2 
 marginaleffects-0.10.0/marginaleffects/R/methods_ordinal.R                                                   |    4 
 marginaleffects-0.10.0/marginaleffects/R/methods_quantreg.R                                                  |    2 
 marginaleffects-0.10.0/marginaleffects/R/methods_rms.R                                                       |   25 
 marginaleffects-0.10.0/marginaleffects/R/methods_robustlmm.R                                                 |    6 
 marginaleffects-0.10.0/marginaleffects/R/methods_survival.R                                                  |    2 
 marginaleffects-0.10.0/marginaleffects/R/methods_tobit1.R                                                    |    2 
 marginaleffects-0.10.0/marginaleffects/R/package.R                                                           |    9 
 marginaleffects-0.10.0/marginaleffects/R/plot.R                                                              |   84 -
 marginaleffects-0.10.0/marginaleffects/R/plot_build.R                                                        |only
 marginaleffects-0.10.0/marginaleffects/R/plot_comparisons.R                                                  |  295 +-----
 marginaleffects-0.10.0/marginaleffects/R/plot_predictions.R                                                  |  384 ++------
 marginaleffects-0.10.0/marginaleffects/R/plot_slopes.R                                                       |   90 +
 marginaleffects-0.10.0/marginaleffects/R/posterior_draws.R                                                   |    2 
 marginaleffects-0.10.0/marginaleffects/R/predictions.R                                                       |  269 +++--
 marginaleffects-0.10.0/marginaleffects/R/print.R                                                             |   95 +-
 marginaleffects-0.10.0/marginaleffects/R/recall.R                                                            |    5 
 marginaleffects-0.10.0/marginaleffects/R/sanitize_condition.R                                                |only
 marginaleffects-0.10.0/marginaleffects/R/sanitize_newdata.R                                                  |   54 -
 marginaleffects-0.10.0/marginaleffects/R/sanitize_type.R                                                     |   60 -
 marginaleffects-0.10.0/marginaleffects/R/sanitize_variables.R                                                |  387 ++++----
 marginaleffects-0.10.0/marginaleffects/R/sanity_by.R                                                         |    5 
 marginaleffects-0.10.0/marginaleffects/R/sanity_dots.R                                                       |   12 
 marginaleffects-0.10.0/marginaleffects/R/sanity_model.R                                                      |    5 
 marginaleffects-0.10.0/marginaleffects/R/slopes.R                                                            |  128 +-
 marginaleffects-0.10.0/marginaleffects/R/summary.R                                                           |    3 
 marginaleffects-0.10.0/marginaleffects/R/type_dictionary.R                                                   |  245 ++---
 marginaleffects-0.10.0/marginaleffects/R/utils.R                                                             |   52 +
 marginaleffects-0.10.0/marginaleffects/README.md                                                             |  320 +------
 marginaleffects-0.10.0/marginaleffects/inst/WORDLIST                                                         |   10 
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 marginaleffects-0.10.0/marginaleffects/inst/tinytest/_tinyviztest/summary-marginaleffects_conf_level_20.txt  |    6 
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 marginaleffects-0.10.0/marginaleffects/inst/tinytest/_tinyviztest_review                                     |only
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/helpers.R                                               |   43 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-aaa-warn_once.R                                    |    5 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-analytic.R                                         |    1 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-bugfix.R                                           |   17 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-by.R                                               |   98 +-
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-call.R                                             |    6 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-character.R                                        |    3 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-comparisons-interaction.R                          |   10 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-comparisons.R                                      |    6 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-complete_levels.R                                  |    6 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-conf.level.R                                       |    2 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-contrast.R                                         |   47 -
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-counterfactual.R                                   |   13 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-datagrid.R                                         |    8 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-df.R                                               |   12 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-dots.R                                             |    4 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-elasticity.R                                       |   12 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-eps.R                                              |    4 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-equivalence.R                                      |   66 -
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-factor.R                                           |   23 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-gformula.R                                         |    8 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-hypotheses.R                                       |   60 +
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-hypothesis.R                                       |   24 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-inferences.R                                       |    5 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-interaction.R                                      |   38 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-logical.R                                          |    2 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-marginal_means.R                                   |only
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 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-missing.R                                          |    2 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-nested.R                                           |    2 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-newdata.R                                          |   15 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-AER.R                                          |    5 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-MASS.R                                         |   20 
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 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-aod.R                                          |    3 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-betareg.R                                      |    2 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-bife.R                                         |    6 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-biglm.R                                        |    5 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-blme.R                                         |    6 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-brglm2.R                                       |    4 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-brms-average.R                                 |   11 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-brms.R                                         |   40 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-crch.R                                         |    5 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-estimatr.R                                     |   13 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-fixest.R                                       |   16 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-gam.R                                          |   14 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-gamlss.R                                       |    6 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-geepack.R                                      |   11 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-glmmTMB.R                                      |   56 +
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-glmx.R                                         |   18 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-ivreg.R                                        |   12 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-lme4.R                                         |   77 -
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-lmerTest.R                                     |    9 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-mclogit.R                                      |   13 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-mgcv.R                                         |  169 +--
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-mhurdle.R                                      |    4 
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 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-mlogit.R                                       |    4 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-nlme.R                                         |    8 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-nnet.R                                         |    8 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-ordinal.R                                      |   31 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-plm.R                                          |   15 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-pscl.R                                         |    4 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-quantreg.R                                     |    4 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-rms.R                                          |    6 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-robust.R                                       |    5 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-robustbase.R                                   |    4 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-robustlmm.R                                    |    4 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-rstanarm.R                                     |    3 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-sampleSelection.R                              |    4 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-scam.R                                         |    4 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-speedglm.R                                     |    4 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-stats.R                                        |   12 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-survey.R                                       |    4 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-survival.R                                     |   25 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-tidymodels.R                                   |    3 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-tobit1.R                                       |    4 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-pkg-truncreg.R                                     |    4 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-plot.R                                             |   30 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-plot_comparisons.R                                 |   32 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-plot_predictions.R                                 |   31 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-plot_slopes.R                                      |   24 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-predict_type.R                                     |   26 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-predictions.R                                      |   31 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-print.R                                            |   29 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-rank-deficient.R                                   |    4 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-sanity.R                                           |    4 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-summary.R                                          |   13 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-tidy-predictions.R                                 |   15 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-tidy.R                                             |    6 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-tinytest.R                                         |    2 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-transform_post.R                                   |    8 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-transform_pre.R                                    |    6 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-typical.R                                          |   20 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-variables.R                                        |   26 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-vcov.R                                             |    3 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-vignettes.R                                        |    4 
 marginaleffects-0.10.0/marginaleffects/inst/tinytest/test-weights.R                                          |    4 
 marginaleffects-0.10.0/marginaleffects/man/comparisons.Rd                                                    |   44 
 marginaleffects-0.10.0/marginaleffects/man/complete_levels.Rd                                                |    2 
 marginaleffects-0.10.0/marginaleffects/man/get_predict.Rd                                                    |  314 +-----
 marginaleffects-0.10.0/marginaleffects/man/get_vcov.Rd                                                       |   11 
 marginaleffects-0.10.0/marginaleffects/man/hypotheses.Rd                                                     |    2 
 marginaleffects-0.10.0/marginaleffects/man/inferences.Rd                                                     |   13 
 marginaleffects-0.10.0/marginaleffects/man/marginal_means.Rd                                                 |   62 -
 marginaleffects-0.10.0/marginaleffects/man/marginalmeans.Rd                                                  |   62 -
 marginaleffects-0.10.0/marginaleffects/man/plot_cap.Rd                                                       |   28 
 marginaleffects-0.10.0/marginaleffects/man/plot_cco.Rd                                                       |   29 
 marginaleffects-0.10.0/marginaleffects/man/plot_cme.Rd                                                       |   28 
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Package lactater updated to version 0.1.2 with previous version 0.1.1 dated 2022-09-08

Title: Tools for Analyzing Lactate Thresholds
Description: Set of tools for analyzing lactate thresholds from a step incremental test to exhaustion. Easily analyze the methods Log-log, Onset of Blood Lactate Accumulation (OBLA), Baseline plus (Bsln+), Dmax, Lactate Turning Point (LTP), and Lactate / Intensity ratio (LTratio) in cycling, running, or swimming. Beaver WL, Wasserman K, Whipp BJ (1985) <doi:10.1152/jappl.1985.59.6.1936>. Heck H, Mader A, Hess G, Mücke S, Müller R, Hollmann W (1985) <doi:10.1055/s-2008-1025824>. Kindermann W, Simon G, Keul J (1979) <doi:10.1007/BF00421101>. Skinner JS, Mclellan TH (1980) <doi:10.1080/02701367.1980.10609285>. Berg A, Jakob E, Lehmann M, Dickhuth HH, Huber G, Keul J (1990) <PMID:2408033>. Zoladz JA, Rademaker AC, Sargeant AJ (1995) <doi:10.1113/jphysiol.1995.sp020959>. Cheng B, Kuipers H, Snyder A, Keizer H, Jeukendrup A, Hesselink M (1992) <doi:10.1055/s-2007-1021309>. Bishop D, Jenkins DG, Mackinnon LT (1998) <doi:10.1097/00005768-199808000-00014>. Hug [...truncated...]
Author: Felipe Mattioni Maturana [aut, cre]
Maintainer: Felipe Mattioni Maturana <felipe.mattioni@med.uni-tuebingen.de>

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Package DDD updated to version 5.2.1 with previous version 5.0 dated 2021-07-19

Title: Diversity-Dependent Diversification
Description: Implements maximum likelihood and bootstrap methods based on the diversity-dependent birth-death process to test whether speciation or extinction are diversity-dependent, under various models including various types of key innovations. See Etienne et al. 2012, Proc. Roy. Soc. B 279: 1300-1309, <DOI:10.1098/rspb.2011.1439>, Etienne & Haegeman 2012, Am. Nat. 180: E75-E89, <DOI:10.1086/667574>, Etienne et al. 2016. Meth. Ecol. Evol. 7: 1092-1099, <DOI:10.1111/2041-210X.12565> and Laudanno et al. 2021. Syst. Biol. 70: 389–407, <DOI:10.1093/sysbio/syaa048>. Also contains functions to simulate the diversity-dependent process.
Author: Rampal S. Etienne [aut, cre] , Bart Haegeman [aut] , Hanno Hildenbrandt [ctb] , Giovanni Laudanno [ctb]
Maintainer: Rampal S. Etienne <r.s.etienne@rug.nl>

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Package bigDM updated to version 0.5.1 with previous version 0.5.0 dated 2022-10-28

Title: Scalable Bayesian Disease Mapping Models for High-Dimensional Data
Description: Implements several spatial and spatio-temporal scalable disease mapping models for high-dimensional count data using the INLA technique for approximate Bayesian inference in latent Gaussian models (Orozco-Acosta et al., 2021 <doi:10.1016/j.spasta.2021.100496>; Orozco-Acosta et al., 2023 <doi:10.1016/j.cmpb.2023.107403> and Vicente et al., 2022 <arXiv:2210.14849>). The creation and develpment of this package has been supported by Project MTM2017-82553-R (AEI/FEDER, UE) and Project PID2020-113125RB-I00/MCIN/AEI/10.13039/501100011033. It has also been partially funded by the Public University of Navarra (project PJUPNA2001).
Author: Aritz Adin [aut, cre] , Erick Orozco-Acosta [aut] , Maria Dolores Ugarte [aut]
Maintainer: Aritz Adin <aritz.adin@unavarra.es>

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Package isotone updated to version 1.1-1 with previous version 1.1-0 dated 2015-07-24

Title: Active Set and Generalized PAVA for Isotone Optimization
Description: Contains two main functions: one for solving general isotone regression problems using the pool-adjacent-violators algorithm (PAVA); another one provides a framework for active set methods for isotone optimization problems with arbitrary order restrictions. Various types of loss functions are prespecified.
Author: Patrick Mair [aut, cre], Jan De Leeuw [aut], Kurt Hornik [aut]
Maintainer: Patrick Mair <mair@fas.harvard.edu>

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Package MrSGUIDE (with last version 0.1.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-10-15 0.1.2
2020-05-30 0.1.1
2020-05-29 0.1.0

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Package IFMCDM (with last version 0.1.15) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2023-02-08 0.1.15

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