Sat, 11 Mar 2023

Package fastai updated to version 2.2.1 with previous version 2.2.0 dated 2022-03-21

Title: Interface to 'fastai'
Description: The 'fastai' <https://docs.fast.ai/index.html> library simplifies training fast and accurate neural networks using modern best practices. It is based on research in to deep learning best practices undertaken at 'fast.ai', including 'out of the box' support for vision, text, tabular, audio, time series, and collaborative filtering models.
Author: Turgut Abdullayev [ctb, cre, cph, aut]
Maintainer: Turgut Abdullayev <turqut.a.314@gmail.com>

Diff between fastai versions 2.2.0 dated 2022-03-21 and 2.2.1 dated 2023-03-11

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Package qtl2pattern updated to version 1.2.1 with previous version 1.2.0 dated 2022-01-24

Title: Pattern Support for 'qtl2' Package
Description: Routines in 'qtl2' to study allele patterns in quantitative trait loci (QTL) mapping over a chromosome. Useful in crosses with more than two alleles to identify how sets of alleles, genetically different strands at the same locus, have different response levels. Plots show profiles over a chromosome. Can handle multiple traits together. See <https://github.com/byandell/qtl2pattern>.
Author: Brian S Yandell [aut, cre]
Maintainer: Brian S Yandell <brian.yandell@wisc.edu>

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Package qtl2ggplot updated to version 1.2.2 with previous version 1.2.1 dated 2022-01-24

Title: Data Visualization for QTL Experiments
Description: Functions to plot QTL (quantitative trait loci) analysis results and related diagnostics. Part of 'qtl2', an upgrade of the 'qtl' package to better handle high-dimensional data and complex cross designs.
Author: Brian S Yandell [aut, cre], Karl W Broman [aut]
Maintainer: Brian S Yandell <brian.yandell@wisc.edu>

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Package nestedmodels updated to version 1.0.4 with previous version 1.0.3 dated 2023-01-05

Title: Tidy Modelling for Nested Data
Description: A modelling framework for nested data using the 'tidymodels' ecosystem. Specify how to nest data using the 'recipes' package, create testing and training splits using 'rsample', and fit models to this data using the 'parsnip' and 'workflows' packages. Allows any model to be fit to nested data.
Author: Ashby Thorpe [aut, cre] , Hadley Wickham [ctb]
Maintainer: Ashby Thorpe <ashbythorpe@gmail.com>

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Package r2symbols updated to version 1.4 with previous version 1.3 dated 2023-01-07

Title: Symbols for 'Markdown' and 'Shiny' Application
Description: Direct insertion of over 1000 symbols (e.g. currencies, letters, emojis, arrows, mathematical symbols and so on) into 'Rmarkdown' documents and 'Shiny' applications by incorporating 'HTML' hex codes.
Author: Obinna Obianom [aut, cre]
Maintainer: Obinna Obianom <idonshayo@gmail.com>

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Package pkgKitten updated to version 0.2.3 with previous version 0.2.2 dated 2021-07-20

Title: Create Simple Packages Which Do not Upset R Package Checks
Description: Provides a function kitten() which creates cute little packages which pass R package checks. This sets it apart from package.skeleton() which it calls, and which leaves imperfect files behind. As this is not exactly helpful for beginners, kitten() offers an alternative. Unit test support can be added via the 'tinytest' package (if present), and documentation-creation support can be added via 'roxygen2' (if present).
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>

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Package actilifecounts updated to version 1.1.1 with previous version 1.1.0 dated 2022-09-26

Title: Generate Activity Counts from Raw Accelerometer Data
Description: A tool to obtain activity counts, originally a translation of the 'python' package 'agcounts' <https://github.com/actigraph/agcounts>. This tool allows the processing of data from any accelerometer brand, with a more flexible approach to handle different sampling frequencies.
Author: Jairo Hidalgo Migueles
Maintainer: Jairo Hidalgo Migueles <jairo.hidalgo.migueles@gmail.com>

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Package keyholder updated to version 0.1.7 with previous version 0.1.6 dated 2021-12-04

Title: Store Data About Rows
Description: Tools for keeping track of information, named "keys", about rows of data frame like objects. This is done by creating special attribute "keys" which is updated after every change in rows (subsetting, ordering, etc.). This package is designed to work tightly with 'dplyr' package.
Author: Evgeni Chasnovski [aut, cre]
Maintainer: Evgeni Chasnovski <evgeni.chasnovski@gmail.com>

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Package did2s updated to version 1.0.0 with previous version 0.7.0 dated 2022-07-21

Title: Two-Stage Difference-in-Differences Following Gardner (2021)
Description: Estimates Two-way Fixed Effects difference-in-differences/event-study models using the approach proposed by Gardner (2021). To avoid the problems caused by OLS estimation of the Two-way Fixed Effects model, this function first estimates the fixed effects and covariates using untreated observations and then in a second stage, estimates the treatment effects.
Author: Kyle Butts [aut, cre] , John Gardner [aut] , Grant McDermott [ctb] , Laurent Berge [ctb]
Maintainer: Kyle Butts <kyle.butts@colorado.edu>

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Package biblio updated to version 0.0.8 with previous version 0.0.7 dated 2022-11-11

Title: Interacting with BibTeX Databases
Description: Reading and writing BibTeX files using data frames in R sessions.
Author: Miguel Alvarez [aut, cre]
Maintainer: Miguel Alvarez <kamapu78@gmail.com>

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Package basecamb updated to version 1.1.2 with previous version 1.1.1 dated 2023-01-22

Title: Utilities for Streamlined Data Import, Imputation and Modelling
Description: Provides functions streamlining the data analysis workflow: Outsourcing data import, renaming and type casting to a *.csv. Manipulating imputed datasets and fitting models on them. Summarizing models.
Author: J. Peter Marquardt [aut, cre] , Till D. Best [aut]
Maintainer: J. Peter Marquardt <peter@kmarquardt.de>

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Package DIMORA updated to version 0.3.4 with previous version 0.3.3 dated 2023-01-14

Title: Diffusion Models R Analysis
Description: The implemented methods are: Standard Bass model, Generalized Bass model (with rectangular shock, exponential shock, and mixed shock. You can choose to add from 1 to 3 shocks), Guseo-Guidolin model and Variable Potential Market model, and UCRCD model. The Bass model consists of a simple differential equation that describes the process of how new products get adopted in a population, the Generalized Bass model is a generalization of the Bass model in which there is a "carrier" function x(t) that allows to change the speed of time sliding. In some real processes the reachable potential of the resource available in a temporal instant may appear to be not constant over time, because of this we use Variable Potential Market model, in which the Guseo-Guidolin has a particular specification for the market function. The UCRCD model (Unbalanced Competition and Regime Change Diachronic) is a diffusion model used to capture the dynamics of the competitive or collaborative transition.
Author: Savio Andrea, Zanghi Federico, Filippo Ziliotto, Bessi Alessandro
Maintainer: Savio Andrea <svandr97@gmail.com>

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Package future.tests updated to version 0.6.0 with previous version 0.5.0 dated 2022-12-16

Title: Test Suite for 'Future API' Backends
Description: Backends implementing the 'Future' API, as defined by the 'future' package, should use the tests provided by this package to validate that they meet the minimal requirements of the 'Future' API. The tests can be performed easily from within R or from outside of R from the command line making it easy to include them package tests and in Continuous Integration (CI) pipelines.
Author: Henrik Bengtsson [aut, cre, cph], The R Consortium [fnd] grant in 2017)
Maintainer: Henrik Bengtsson <henrikb@braju.com>

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Package asylum updated to version 1.0.3 with previous version 1.0.2 dated 2022-09-10

Title: Data on Asylum and Resettlement for the UK
Description: Data on Asylum and Resettlement for the UK, provided by the Home Office <https://www.gov.uk/government/statistical-data-sets/immigration-system-statistics-data-tables-year-ending-december-2022>.
Author: Matthew Gwynfryn Thomas [cre, aut], Mike Page [aut], British Red Cross [cph]
Maintainer: Matthew Gwynfryn Thomas <matthewgthomas@gmail.com>

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Package rvMF (with last version 0.0.3) was removed from CRAN

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Package nomnoml updated to version 0.2.6 with previous version 0.2.5 dated 2022-02-23

Title: Sassy 'UML' Diagrams
Description: A tool for drawing sassy 'UML' diagrams based on a simple syntax, see <https://www.nomnoml.com>. Supports styling, R Markdown and exporting diagrams in the PNG format.
Author: Andrie de Vries [aut, cre], Javier Luraschi [aut], Daniel Kallin [cph] , RStudio [cph, fnd]
Maintainer: Andrie de Vries <apdevries@gmail.com>

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Package oncomsm updated to version 0.1.3 with previous version 0.1.2 dated 2022-12-09

Title: Bayesian Multi-State Models for Early Oncology
Description: Implements methods to fit a parametric Bayesian multi-state model to tumor response data. The model can be used to sample from the predictive distribution to impute missing data and calculate probability of success for custom decision criteria in early clinical trials during an ongoing trial. The inference is implemented using 'stan'.
Author: Kevin Kunzmann [aut, cre] , Karthik Ananthakrishnan [ctb], Boehringer Ingelheim Ltd. [cph, fnd]
Maintainer: Kevin Kunzmann <kevin.kunzmann@boehringer-ingelheim.com>

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Package spOccupancy updated to version 0.6.1 with previous version 0.6.0 dated 2023-03-03

Title: Single-Species, Multi-Species, and Integrated Spatial Occupancy Models
Description: Fits single-species, multi-species, and integrated non-spatial and spatial occupancy models using Markov Chain Monte Carlo (MCMC). Models are fit using Polya-Gamma data augmentation detailed in Polson, Scott, and Windle (2013) <doi:10.1080/01621459.2013.829001>. Spatial models are fit using either Gaussian processes or Nearest Neighbor Gaussian Processes (NNGP) for large spatial datasets. Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2020) <arXiv:2001.09111>. Provides functionality for data integration of multiple single-species occupancy data sets using a joint likelihood framework. Details on data integration are given in Miller, Pacifici, Sanderlin, and Reich (2019) <doi:10.1111/2041-210X.13110>. Details on single-species and multi-species models are found in MacKenzie, Nichols, Lachman, Droege, Royle, and Langtimm (2002) <doi:10.1890/0012-9658(2002)083[2 [...truncated...]
Author: Jeffrey Doser [aut, cre], Andrew Finley [aut], Marc Kery [ctb]
Maintainer: Jeffrey Doser <doserjef@msu.edu>

Diff between spOccupancy versions 0.6.0 dated 2023-03-03 and 0.6.1 dated 2023-03-11

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New package medfate with initial version 2.9.3
Package: medfate
Title: Mediterranean Forest Simulation
Version: 2.9.3
Date: 2023-03-10
Description: Simulate Mediterranean forest functioning and dynamics using cohort-based description of vegetation [De Caceres et al. (2015) <doi:10.1016/j.agrformet.2015.06.012>; De Caceres et al. (2021) <doi:10.1016/j.agrformet.2020.108233>].
License: GPL (>= 2) | LGPL (>= 3)
URL: https://emf-creaf.github.io/medfate/
LazyLoad: yes
Depends: R (>= 3.5.0)
Imports: ggplot2 (>= 3.0.0), meteoland (>= 0.8.1), Rcpp (>= 1.0.6), shiny
Suggests: testthat (>= 3.0.0), knitr, rmarkdown
LinkingTo: Rcpp, meteoland
Encoding: UTF-8
NeedsCompilation: yes
BugReports: https://github.com/emf-creaf/medfate/issues
LazyData: true
Packaged: 2023-03-10 13:28:51 UTC; miquel
Author: Miquel De Caceres [aut, cre, cph] , Victor Granda [aut] , Antoine Cabon [aut] , Jordi Martinez-Vilalta [ctb] , Maurizio Mencuccini [ctb] , Nicolas Martin-StPaul [ctb] , Aitor Ameztegui [ctb] , Shengli Huang [ctb] , John Burkardt [cph]
Maintainer: Miquel De Caceres <miquelcaceres@gmail.com>
Repository: CRAN
Date/Publication: 2023-03-11 09:40:09 UTC

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New package CPE with initial version 1.6.3
Package: CPE
Version: 1.6.3
Date: 2023-03-10
Title: Concordance Probability Estimates in Survival Analysis
Author: Qianxing Mo [aut, cre], Mithat Gonen [ctb], Glenn Heller [ctb]
Depends: R (>= 4.1.0),survival,rms
Maintainer: Qianxing Mo <qianxing.mo@moffitt.org>
Description: Concordance probability estimate (CPE) is a commonly used performance measure in survival analysis that evaluates the predictive accuracy of a survival model. It measures how well a model can distinguish between pairs of individuals with different survival times. Specifically, it calculate the proportion of all pairs of individuals whose predicted survival times are correctly ordered.
License: GPL (>= 2)
NeedsCompilation: yes
Packaged: 2023-03-10 22:01:59 UTC; 4468133
Repository: CRAN
Date/Publication: 2023-03-11 09:40:15 UTC

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Package galah (with last version 1.5.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2023-03-10 1.5.2
2023-01-13 1.5.1
2022-10-27 1.5.0

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Package diceR updated to version 2.0.0 with previous version 1.2.2 dated 2022-09-29

Title: Diverse Cluster Ensemble in R
Description: Performs cluster analysis using an ensemble clustering framework, Chiu & Talhouk (2018) <doi:10.1186/s12859-017-1996-y>. Results from a diverse set of algorithms are pooled together using methods such as majority voting, K-Modes, LinkCluE, and CSPA. There are options to compare cluster assignments across algorithms using internal and external indices, visualizations such as heatmaps, and significance testing for the existence of clusters.
Author: Derek Chiu [aut, cre], Aline Talhouk [aut], Johnson Liu [ctb, com]
Maintainer: Derek Chiu <dchiu@bccrc.ca>

Diff between diceR versions 1.2.2 dated 2022-09-29 and 2.0.0 dated 2023-03-11

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Package scTEP (with last version 0.1.0) was removed from CRAN

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2022-08-18 1.2.0
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2021-06-10 1.1.1
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Package mfe (with last version 0.1.5) was removed from CRAN

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Package scCAN (with last version 1.0.4) was removed from CRAN

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2022-04-05 1.0.4
2022-03-30 1.0.3
2022-03-28 1.0.2
2021-07-19 1.0.1
2021-07-12 1.0.0

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Package visxhclust (with last version 1.0.0) was removed from CRAN

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Package clusterCrit (with last version 1.2.8) was removed from CRAN

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2018-07-26 1.2.8
2016-05-27 1.2.7
2015-08-31 1.2.6
2015-06-04 1.2.5
2014-12-11 1.2.4

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Package akmedoids (with last version 1.3.0) was removed from CRAN

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2021-04-13 1.3.0
2020-01-09 0.1.5
2019-04-19 0.1.2
2019-04-18 0.1.1
2019-03-24 0.1.0

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Package functClust (with last version 0.1.6) was removed from CRAN

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2020-12-02 0.1.6

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2021-02-24 0.5.5
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2020-09-20 0.5.1
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Package haploR (with last version 4.0.6) was removed from CRAN

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Package ccml (with last version 1.2.0) was removed from CRAN

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2022-12-14 1.2.0
2022-08-29 1.1.0
2022-08-18 1.0.0

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Package RcmdrPlugin.DCCV updated to version 0.1-2 with previous version 0.1-1 dated 2021-02-08

Title: R Commander Plug-in for Dichotomous Choice Contingent Valuation
Description: Adds menu items to the R Commander for parametric analysis of dichotomous choice contingent valuation (DCCV) data. CV is a question-based survey method to elicit individuals' preferences for goods and services. This package depends on functions regarding parametric DCCV analysis in the package DCchoice. See Carson and Hanemann (2005) <doi:10.1016/S1574-0099(05)02017-6> for DCCV.
Author: Hideo Aizaki
Maintainer: Hideo Aizaki <azk-r@spa.nifty.com>

Diff between RcmdrPlugin.DCCV versions 0.1-1 dated 2021-02-08 and 0.1-2 dated 2023-03-11

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More information about RcmdrPlugin.DCCV at CRAN
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Package rater updated to version 1.3.0 with previous version 1.2.0 dated 2021-07-13

Title: Statistical Models of Repeated Categorical Rating Data
Description: Fit statistical models based on the Dawid-Skene model - Dawid and Skene (1979) <doi:10.2307/2346806> - to repeated categorical rating data. Full Bayesian inference for these models is supported through the Stan modelling language. 'rater' also allows the user to extract and plot key parameters of these models.
Author: Jeffrey Pullin [aut, cre, cph] , Damjan Vukcevic [aut] , Lars Moelgaard Saxhaug [ctb]
Maintainer: Jeffrey Pullin <jeffrey.pullin@gmail.com>

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More information about rater at CRAN
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Package spatstat.utils updated to version 3.0-2 with previous version 3.0-1 dated 2022-10-19

Title: Utility Functions for 'spatstat'
Description: Contains utility functions for the 'spatstat' family of packages which may also be useful for other purposes.
Author: Adrian Baddeley [aut, cre] , Rolf Turner [aut] , Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>

Diff between spatstat.utils versions 3.0-1 dated 2022-10-19 and 3.0-2 dated 2023-03-11

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More information about spatstat.utils at CRAN
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