Title: Convenience Functions for Psychology
Description: Make your workflow faster and easier. Easily customizable
plots (via 'ggplot2'), nice APA tables (following the style of the
*American Psychological Association*) exportable to Word (via
'flextable'), easily run statistical tests or check assumptions, and
automatize various other tasks.
Author: Remi Theriault [aut, cre]
Maintainer: Remi Theriault <remi.theriault@mail.mcgill.ca>
Diff between rempsyc versions 0.1.2 dated 2023-05-20 and 0.1.3 dated 2023-06-19
rempsyc-0.1.2/rempsyc/man/figures/README-nice_scatter-2.png |only rempsyc-0.1.2/rempsyc/vignettes/images/blog_assumptions/assumptions1.PNG |only rempsyc-0.1.2/rempsyc/vignettes/images/blog_assumptions/assumptions2.PNG |only rempsyc-0.1.2/rempsyc/vignettes/images/blog_assumptions/assumptions2_edited.PNG |only rempsyc-0.1.3/rempsyc/DESCRIPTION | 20 rempsyc-0.1.3/rempsyc/MD5 | 208 - rempsyc-0.1.3/rempsyc/NEWS.md | 723 ++-- rempsyc-0.1.3/rempsyc/R/best_duplicate.R | 99 rempsyc-0.1.3/rempsyc/R/cormatrix_excel.R | 705 ++-- rempsyc-0.1.3/rempsyc/R/extract_duplicates.R | 95 rempsyc-0.1.3/rempsyc/R/find_mad.R | 315 - rempsyc-0.1.3/rempsyc/R/format_value.R | 6 rempsyc-0.1.3/rempsyc/R/global_variables.R | 18 rempsyc-0.1.3/rempsyc/R/nice_assumptions.R | 151 rempsyc-0.1.3/rempsyc/R/nice_contrasts.R | 319 - rempsyc-0.1.3/rempsyc/R/nice_density.R | 371 +- rempsyc-0.1.3/rempsyc/R/nice_lm.R | 274 - rempsyc-0.1.3/rempsyc/R/nice_lm_contrasts.R | 335 - rempsyc-0.1.3/rempsyc/R/nice_lm_slopes.R | 353 +- rempsyc-0.1.3/rempsyc/R/nice_mod.R | 280 - 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rempsyc-0.1.3/rempsyc/inst/doc/circles.R | 27 rempsyc-0.1.3/rempsyc/inst/doc/circles.Rmd | 217 - rempsyc-0.1.3/rempsyc/inst/doc/circles.html | 26 rempsyc-0.1.3/rempsyc/inst/doc/contrasts.R | 702 ++-- rempsyc-0.1.3/rempsyc/inst/doc/contrasts.Rmd | 1020 +++-- rempsyc-0.1.3/rempsyc/inst/doc/contrasts.html | 226 - rempsyc-0.1.3/rempsyc/inst/doc/moderation.R | 97 rempsyc-0.1.3/rempsyc/inst/doc/moderation.Rmd | 97 rempsyc-0.1.3/rempsyc/inst/doc/moderation.html | 176 - rempsyc-0.1.3/rempsyc/inst/doc/randomize.R | 63 rempsyc-0.1.3/rempsyc/inst/doc/randomize.Rmd | 351 +- rempsyc-0.1.3/rempsyc/inst/doc/randomize.html | 158 rempsyc-0.1.3/rempsyc/inst/doc/scatter.R | 486 +- rempsyc-0.1.3/rempsyc/inst/doc/scatter.Rmd | 419 +- rempsyc-0.1.3/rempsyc/inst/doc/scatter.html | 464 +- rempsyc-0.1.3/rempsyc/inst/doc/t-test.R | 86 rempsyc-0.1.3/rempsyc/inst/doc/t-test.Rmd | 86 rempsyc-0.1.3/rempsyc/inst/doc/t-test.html | 131 rempsyc-0.1.3/rempsyc/inst/doc/table.R | 147 rempsyc-0.1.3/rempsyc/inst/doc/table.Rmd | 154 rempsyc-0.1.3/rempsyc/inst/doc/table.html | 387 +- rempsyc-0.1.3/rempsyc/inst/doc/violin.R | 281 - rempsyc-0.1.3/rempsyc/inst/doc/violin.Rmd | 271 - rempsyc-0.1.3/rempsyc/inst/doc/violin.html | 316 + rempsyc-0.1.3/rempsyc/man/best_duplicate.Rd | 8 rempsyc-0.1.3/rempsyc/man/cormatrix_excel.Rd | 10 rempsyc-0.1.3/rempsyc/man/extract_duplicates.Rd | 10 rempsyc-0.1.3/rempsyc/man/figures/README-nice_contrasts-1.png |binary rempsyc-0.1.3/rempsyc/man/figures/README-nice_scatter2-1.png |only rempsyc-0.1.3/rempsyc/man/figures/README-nice_varplot-1.png |binary rempsyc-0.1.3/rempsyc/man/nice_assumptions.Rd | 3 rempsyc-0.1.3/rempsyc/man/nice_contrasts.Rd | 2 rempsyc-0.1.3/rempsyc/man/nice_density.Rd | 3 rempsyc-0.1.3/rempsyc/man/nice_lm.Rd | 4 rempsyc-0.1.3/rempsyc/man/nice_lm_contrasts.Rd | 3 rempsyc-0.1.3/rempsyc/man/nice_lm_slopes.Rd | 4 rempsyc-0.1.3/rempsyc/man/nice_mod.Rd | 4 rempsyc-0.1.3/rempsyc/man/nice_normality.Rd | 3 rempsyc-0.1.3/rempsyc/man/nice_qq.Rd | 3 rempsyc-0.1.3/rempsyc/man/nice_scatter.Rd | 32 rempsyc-0.1.3/rempsyc/man/nice_slopes.Rd | 4 rempsyc-0.1.3/rempsyc/man/nice_t_test.Rd | 2 rempsyc-0.1.3/rempsyc/man/nice_table.Rd | 32 rempsyc-0.1.3/rempsyc/man/nice_varplot.Rd | 3 rempsyc-0.1.3/rempsyc/man/nice_violin.Rd | 22 rempsyc-0.1.3/rempsyc/man/overlap_circle.Rd | 8 rempsyc-0.1.3/rempsyc/man/plot_outliers.Rd | 9 rempsyc-0.1.3/rempsyc/man/rcompanion_groupwiseMean.Rd | 3 rempsyc-0.1.3/rempsyc/man/rempsyc-package.Rd | 50 rempsyc-0.1.3/rempsyc/man/winsorize_mad.Rd | 84 rempsyc-0.1.3/rempsyc/tests/testthat.R | 9 rempsyc-0.1.3/rempsyc/tests/testthat/test-nice_violin.R | 270 - rempsyc-0.1.3/rempsyc/vignettes/assumptions.Rmd | 149 rempsyc-0.1.3/rempsyc/vignettes/circles.Rmd | 217 - rempsyc-0.1.3/rempsyc/vignettes/contrasts.Rmd | 1020 +++-- rempsyc-0.1.3/rempsyc/vignettes/images/blog_assumptions/assumptions1.png |only rempsyc-0.1.3/rempsyc/vignettes/images/blog_assumptions/assumptions2.png |only rempsyc-0.1.3/rempsyc/vignettes/images/blog_assumptions/assumptions2_edited.png |only rempsyc-0.1.3/rempsyc/vignettes/moderation.Rmd | 97 rempsyc-0.1.3/rempsyc/vignettes/randomize.Rmd | 351 +- rempsyc-0.1.3/rempsyc/vignettes/scatter.Rmd | 419 +- rempsyc-0.1.3/rempsyc/vignettes/t-test.Rmd | 86 rempsyc-0.1.3/rempsyc/vignettes/table.Rmd | 154 rempsyc-0.1.3/rempsyc/vignettes/violin.Rmd | 271 - 109 files changed, 10905 insertions(+), 9234 deletions(-)
Title: Board Game Graphics
Description: Functions to make board game graphics with the 'ggplot2', 'grid', 'rayrender', 'rayvertex', and 'rgl' packages. Specializes in game diagrams, animations, and "Print & Play" layouts for the 'piecepack' <https://www.ludism.org/ppwiki> but can make graphics for other board game systems. Includes configurations for several public domain game systems such as checkers, (double-18) dominoes, go, 'piecepack', playing cards, etc.
Author: Trevor L Davis [aut, cre] ,
Linux Foundation [dtc] ,
Delapouite <https://delapouite.com/> [ill] ,
Creative Commons [ill] ` uses "license badges"
from Creative Commons to describe the generated print-and-play
file's license)
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>
Diff between piecepackr versions 1.13.1 dated 2023-03-23 and 1.13.3 dated 2023-06-19
DESCRIPTION | 6 +- MD5 | 34 +++++++-------- NEWS.md | 10 ++++ R/animate_piece.R | 7 --- R/basicPieceGrob.R | 16 ++++--- R/game_systems.R | 5 -- R/pieceGrob-grid.R | 5 -- R/sysdata.rda |binary R/utils-bleed-grobs.R | 3 - R/utils-misc.R | 11 ---- data/spdx_license_list.rda |binary man/basicPieceGrobs.Rd | 5 -- man/game_systems.Rd | 5 -- man/grid.piece.Rd | 5 -- man/pp_utils.Rd | 5 -- tests/testthat/_snaps/draw_component/different-sizes.svg | 4 - tests/testthat/test-obj.R | 4 + tests/testthat/test-utils.R | 2 18 files changed, 60 insertions(+), 67 deletions(-)
Title: Extended Two-Way Fixed Effects
Description: Convenience functions for implementing extended two-way
fixed effect regressions a la Wooldridge (2021, 2022)
<doi:10.2139/ssrn.3906345>, <doi:10.2139/ssrn.4183726>.
Author: Grant McDermott [aut, cre] ,
Frederic Kluser [ctb]
Maintainer: Grant McDermott <grantmcd@uoregon.edu>
Diff between etwfe versions 0.3.3 dated 2023-05-27 and 0.3.4 dated 2023-06-19
DESCRIPTION | 8 MD5 | 12 NEWS.md | 8 README.md | 26 - build/vignette.rds |binary inst/doc/etwfe.html | 1038 ++++++++++++++++++++++++++-------------------- inst/tinytest/test_xvar.R | 4 7 files changed, 625 insertions(+), 471 deletions(-)
Title: Scientific Data on Time of Lineage Divergence for Your Taxa
Description: Methods and workflows to get chronograms (i.e., phylogenetic trees with branch lengths
proportional to time), using open, peer-reviewed, state-of-the-art scientific data on time of lineage divergence.
This package constitutes the main underlying code of the DateLife web service
at <https://www.datelife.org>. To obtain a single summary chronogram from a group of
relevant chronograms, we implement the Super Distance Matrix (SDM) method
described in Criscuolo et al. (2006) <doi:10.1080/10635150600969872>.
To find the grove of chronograms with a sufficiently overlapping set of taxa
for summarizing, we implement theorem 1.1. from Ané et al. (2009)
<doi:10.1007/s00026-009-0017-x>.
A given phylogenetic tree can be dated using time of lineage divergence data
as secondary calibrations (with caution, see Schenk (2016) <doi:10.1371/journal.pone.0148228>).
To obtain and apply secondary calibrations, the package implements the congruification method described
in Eastman et a [...truncated...]
Author: Brian O'Meara [aut],
Jonathan Eastman [aut],
Tracy Heath [aut],
April Wright [aut],
Klaus Schliep [aut],
Scott Chamberlain [aut],
Peter Midford [aut],
Luke Harmon [aut],
Joseph Brown [aut],
Matt Pennell [aut],
Mike Alfaro [aut],
Luna L. Sanchez Reyes [...truncated...]
Maintainer: Luna L. Sanchez Reyes <sanchez.reyes.luna@gmail.com>
Diff between datelife versions 0.6.7 dated 2023-05-09 and 0.6.8 dated 2023-06-19
DESCRIPTION | 8 MD5 | 29 NAMESPACE | 1 NEWS.md | 6 R/calibrations_extract.R | 22 R/calibrations_match.R | 13 R/get_species_from_ott.R | 103 + R/opentree_taxonomy_general.R | 6 R/to_phylo_all.R | 2 inst/doc/Getting_started_with_datelife.html | 1334 +++++++++---------- inst/doc/fringiliidae.html | 238 +-- inst/doc/make_datelife_query.html | 1870 ++++++++++++++-------------- inst/doc/making_bold_trees.html | 766 +++++------ inst/pkgdown.yml | 4 man/get_all_descendant_species.Rd |only man/get_opentree_species.Rd | 2 16 files changed, 2258 insertions(+), 2146 deletions(-)
Title: Time Series Forecast System
Description: A web application for displaying, analysing and forecasting univariate time series. Includes basic methods such as mean, naïve, seasonal naïve and drift, as well as more complex methods such as Holt-Winters Box,G and Jenkins, G (1976) <doi:10.1111/jtsa.12194> and ARIMA Brockwell, P.J. and R.A.Davis (1991) <doi:10.1007/978-1-4419-0320-4>.
Author: Oldemar Rodriguez [aut, cre],
Diego Jimenez [aut]
Maintainer: Oldemar Rodriguez <oldemar.rodriguez@ucr.ac.cr>
Diff between forecasteR versions 1.1.6 dated 2022-03-02 and 2.0.2 dated 2023-06-19
DESCRIPTION | 17 - MD5 | 73 +++--- NAMESPACE | 11 R/app_server.R | 11 R/app_ui.R | 36 +-- R/forecasteR.R | 8 R/golem_utils_server.R | 17 - R/golem_utils_ui.R | 2 R/mod_acercade.R | 2 R/mod_arima.R | 2 R/mod_carga_datos.R | 97 ++++++-- R/mod_carga_datos_utils.R | 59 ++++- R/mod_deeplearning.R |only R/mod_deeplearning_utils.R |only R/mod_descom.R | 2 R/mod_desvio.R | 2 R/mod_e_ingenuo.R | 2 R/mod_holtwinters.R | 2 R/mod_ingenuo.R | 2 R/mod_m_descom.R | 2 R/mod_normal.R | 2 R/mod_nuevos.R | 431 +++++++++++++++++++++++++++++++------- R/mod_periodograma.R | 2 R/mod_promedio.R | 2 R/mod_redes.R | 2 R/mod_t_c.R | 8 R/mod_t_c_utils.R | 2 R/run_app.R | 8 R/ts_utils.R | 5 R/utils_inputs.R | 44 +++ inst/app/img/forecasteR.png |only inst/app/lang/diccionario.csv | 340 +++++++++++++++-------------- inst/app/lang/translation.bin |binary inst/app/www/forecastR_chooser.js |only inst/app/www/style_forecastR.css | 6 inst/golem-config.yml | 4 man/forecasteR.Rd | 4 man/pred.tskeras.Rd |only man/smoothing.Rd |only man/text_toDate.Rd | 2 man/tskeras.Rd |only 41 files changed, 834 insertions(+), 375 deletions(-)
Title: Tools to Create, Use, and Convert ecocomDP Data
Description: Work with the Ecological Community Data Design Pattern. 'ecocomDP'
is a flexible data model for harmonizing ecological community surveys, in a
research question agnostic format, from source data published across
repositories, and with methods that keep the derived data up-to-date as the
underlying sources change. Described in O'Brien et al. (2021),
<doi:10.1016/j.ecoinf.2021.101374>.
Author: Colin Smith [aut, cre, cph] ,
Eric Sokol [aut] ,
Margaret O'Brien [aut] ,
Matt Bitters [ctb],
Melissa Chen [ctb],
Savannah Gonzales [ctb],
Matt Helmus [ctb],
Brendan Hobart [ctb],
Ruvi Jaimes [ctb],
Lara Janson [ctb],
Marta Jarzyna [ctb],
Michael Jus [...truncated...]
Maintainer: Colin Smith <colin.smith@wisc.edu>
Diff between ecocomDP versions 1.2.1 dated 2022-03-07 and 1.2.2 dated 2023-06-19
ecocomDP-1.2.1/ecocomDP/inst/extdata/dwca_event_core/abstract.txt |only ecocomDP-1.2.1/ecocomDP/inst/extdata/dwca_event_core/intellectual_rights.txt |only ecocomDP-1.2.1/ecocomDP/inst/extdata/dwca_event_core/methods.txt |only ecocomDP-1.2.2/ecocomDP/DESCRIPTION | 28 ecocomDP-1.2.2/ecocomDP/LICENSE | 2 ecocomDP-1.2.2/ecocomDP/MD5 | 305 ecocomDP-1.2.2/ecocomDP/NAMESPACE | 74 ecocomDP-1.2.2/ecocomDP/NEWS.md | 113 ecocomDP-1.2.2/ecocomDP/R/EAL_make_eml.R | 2798 +++--- ecocomDP-1.2.2/ecocomDP/R/EAL_template_arguments.R | 896 +- ecocomDP-1.2.2/ecocomDP/R/EAL_validate.R | 1684 +-- ecocomDP-1.2.2/ecocomDP/R/annotation_dictionary.R | 86 ecocomDP-1.2.2/ecocomDP/R/convert_to_dwca.R | 1548 +-- ecocomDP-1.2.2/ecocomDP/R/create_dataset_summary.R | 320 ecocomDP-1.2.2/ecocomDP/R/create_eml.R | 1444 +-- ecocomDP-1.2.2/ecocomDP/R/create_location.R | 538 - ecocomDP-1.2.2/ecocomDP/R/create_location_ancillary.R | 115 ecocomDP-1.2.2/ecocomDP/R/create_observation.R | 138 ecocomDP-1.2.2/ecocomDP/R/create_observation_ancillary.R | 102 ecocomDP-1.2.2/ecocomDP/R/create_taxon.R | 126 ecocomDP-1.2.2/ecocomDP/R/create_taxon_ancillary.R | 134 ecocomDP-1.2.2/ecocomDP/R/create_variable_mapping.R | 258 ecocomDP-1.2.2/ecocomDP/R/data.R | 148 ecocomDP-1.2.2/ecocomDP/R/flatten_data.R | 1040 +- ecocomDP-1.2.2/ecocomDP/R/map_neon.ecocomdp.10003.001.001.R | 384 ecocomDP-1.2.2/ecocomDP/R/map_neon.ecocomdp.10022.001.001.R | 662 - ecocomDP-1.2.2/ecocomDP/R/map_neon.ecocomdp.10022.001.002.R | 758 - ecocomDP-1.2.2/ecocomDP/R/map_neon.ecocomdp.10043.001.001.R | 637 - ecocomDP-1.2.2/ecocomDP/R/map_neon.ecocomdp.10058.001.001.R | 472 - ecocomDP-1.2.2/ecocomDP/R/map_neon.ecocomdp.10072.001.001.R | 560 - ecocomDP-1.2.2/ecocomDP/R/map_neon.ecocomdp.10092.001.001.R | 730 - ecocomDP-1.2.2/ecocomDP/R/map_neon.ecocomdp.10093.001.001.R | 1368 +-- ecocomDP-1.2.2/ecocomDP/R/map_neon.ecocomdp.20107.001.001.R | 794 - ecocomDP-1.2.2/ecocomDP/R/map_neon.ecocomdp.20120.001.001.R | 484 - ecocomDP-1.2.2/ecocomDP/R/map_neon.ecocomdp.20166.001.001.R | 554 - ecocomDP-1.2.2/ecocomDP/R/map_neon.ecocomdp.20219.001.001.R | 374 ecocomDP-1.2.2/ecocomDP/R/map_neon_data_to_ecocomDP.r | 390 ecocomDP-1.2.2/ecocomDP/R/neon_helper_functions.r | 380 ecocomDP-1.2.2/ecocomDP/R/plot_taxa.R | 2704 +++--- ecocomDP-1.2.2/ecocomDP/R/read_data.R | 1030 +- ecocomDP-1.2.2/ecocomDP/R/save_data.R | 236 ecocomDP-1.2.2/ecocomDP/R/search_data.R | 814 - ecocomDP-1.2.2/ecocomDP/R/taxonomyCleanr.R | 2714 +++--- ecocomDP-1.2.2/ecocomDP/R/utilities.R | 4252 +++++----- ecocomDP-1.2.2/ecocomDP/R/validate_arguments.R | 1156 +- ecocomDP-1.2.2/ecocomDP/R/validate_data.R | 1584 +-- ecocomDP-1.2.2/ecocomDP/R/zzz.R | 120 ecocomDP-1.2.2/ecocomDP/README.md | 136 ecocomDP-1.2.2/ecocomDP/build/vignette.rds |binary ecocomDP-1.2.2/ecocomDP/inst/doc/convert.R | 142 ecocomDP-1.2.2/ecocomDP/inst/doc/convert.Rmd | 178 ecocomDP-1.2.2/ecocomDP/inst/doc/convert.html | 656 + ecocomDP-1.2.2/ecocomDP/inst/doc/create.R | 1134 +- ecocomDP-1.2.2/ecocomDP/inst/doc/create.Rmd | 1180 +- ecocomDP-1.2.2/ecocomDP/inst/doc/create.html | 1669 ++- ecocomDP-1.2.2/ecocomDP/inst/doc/model_overview.R | 18 ecocomDP-1.2.2/ecocomDP/inst/doc/model_overview.Rmd | 408 ecocomDP-1.2.2/ecocomDP/inst/doc/model_overview.html | 1873 ++-- ecocomDP-1.2.2/ecocomDP/inst/doc/shared_practices_create.R | 48 ecocomDP-1.2.2/ecocomDP/inst/doc/shared_practices_create.Rmd | 704 - ecocomDP-1.2.2/ecocomDP/inst/doc/shared_practices_create.html | 1913 ++-- ecocomDP-1.2.2/ecocomDP/inst/doc/use.R | 520 - ecocomDP-1.2.2/ecocomDP/inst/doc/use.Rmd | 678 - ecocomDP-1.2.2/ecocomDP/inst/doc/use.html | 1212 +- ecocomDP-1.2.2/ecocomDP/inst/extdata/L1_versions.txt | 26 ecocomDP-1.2.2/ecocomDP/inst/extdata/create_ecocomDP.R | 852 +- ecocomDP-1.2.2/ecocomDP/inst/extdata/dwca_event_core/annotations.txt | 58 ecocomDP-1.2.2/ecocomDP/inst/extdata/dwca_event_core/attributes_event.txt | 18 ecocomDP-1.2.2/ecocomDP/inst/extdata/dwca_event_core/attributes_extendedmeasurementorfact.txt | 15 ecocomDP-1.2.2/ecocomDP/inst/extdata/dwca_event_core/attributes_occurrence.txt | 17 ecocomDP-1.2.2/ecocomDP/inst/extdata/dwca_event_core/keywords.txt | 18 ecocomDP-1.2.2/ecocomDP/inst/extdata/dwca_event_core/meta.xml | 100 ecocomDP-1.2.2/ecocomDP/inst/extdata/eal_templates/annotation_defaults.txt | 14 ecocomDP-1.2.2/ecocomDP/inst/extdata/eal_templates/annotations.txt | 2 ecocomDP-1.2.2/ecocomDP/inst/extdata/eal_templates/arguments.txt | 88 ecocomDP-1.2.2/ecocomDP/inst/extdata/eal_templates/bounding_boxes.txt | 2 ecocomDP-1.2.2/ecocomDP/inst/extdata/eal_templates/custom_units.txt | 2 ecocomDP-1.2.2/ecocomDP/inst/extdata/eal_templates/geographic_coverage.txt | 2 ecocomDP-1.2.2/ecocomDP/inst/extdata/eal_templates/intellectual_rights_cc0.txt | 2 ecocomDP-1.2.2/ecocomDP/inst/extdata/eal_templates/intellectual_rights_ccby4.0.txt | 2 ecocomDP-1.2.2/ecocomDP/inst/extdata/eal_templates/keywords.txt | 2 ecocomDP-1.2.2/ecocomDP/inst/extdata/eal_templates/personnel.txt | 2 ecocomDP-1.2.2/ecocomDP/inst/extdata/eal_templates/provenance.txt | 2 ecocomDP-1.2.2/ecocomDP/inst/extdata/eal_templates/taxonomic_coverage.txt | 2 ecocomDP-1.2.2/ecocomDP/inst/extdata/eal_templates/template_characteristics.txt | 32 ecocomDP-1.2.2/ecocomDP/inst/extdata/ecocomDP/annotations.txt | 124 ecocomDP-1.2.2/ecocomDP/inst/extdata/ecocomDP/attributes_dataset_summary.txt | 16 ecocomDP-1.2.2/ecocomDP/inst/extdata/ecocomDP/attributes_location.txt | 14 ecocomDP-1.2.2/ecocomDP/inst/extdata/ecocomDP/attributes_location_ancillary.txt | 14 ecocomDP-1.2.2/ecocomDP/inst/extdata/ecocomDP/attributes_observation_ancillary.txt | 12 ecocomDP-1.2.2/ecocomDP/inst/extdata/ecocomDP/attributes_taxon.txt | 12 ecocomDP-1.2.2/ecocomDP/inst/extdata/ecocomDP/attributes_taxon_ancillary.txt | 16 ecocomDP-1.2.2/ecocomDP/inst/extdata/ecocomDP/attributes_variable_mapping.txt | 14 ecocomDP-1.2.2/ecocomDP/inst/extdata/ecocomDP/keywords.txt | 18 ecocomDP-1.2.2/ecocomDP/inst/extdata/neon-field-sites.csv | 164 ecocomDP-1.2.2/ecocomDP/inst/extdata/neon_data_products_for_ecocomDP.txt | 26 ecocomDP-1.2.2/ecocomDP/inst/extdata/template_characteristics.txt | 32 ecocomDP-1.2.2/ecocomDP/inst/extdata/validation_criteria.txt | 120 ecocomDP-1.2.2/ecocomDP/man/annotation_dictionary.Rd | 42 ecocomDP-1.2.2/ecocomDP/man/ants_L0_flat.Rd | 132 ecocomDP-1.2.2/ecocomDP/man/ants_L1.Rd | 50 ecocomDP-1.2.2/ecocomDP/man/calc_geo_extent_bounding_box_m2.Rd | 46 ecocomDP-1.2.2/ecocomDP/man/calc_length_of_survey_years.Rd | 34 ecocomDP-1.2.2/ecocomDP/man/calc_number_of_years_sampled.Rd | 34 ecocomDP-1.2.2/ecocomDP/man/calc_std_dev_interval_betw_years.Rd | 34 ecocomDP-1.2.2/ecocomDP/man/convert_to_dwca.Rd | 124 ecocomDP-1.2.2/ecocomDP/man/create_dataset_summary.Rd | 122 ecocomDP-1.2.2/ecocomDP/man/create_eml.Rd | 240 ecocomDP-1.2.2/ecocomDP/man/create_location.Rd | 114 ecocomDP-1.2.2/ecocomDP/man/create_location_ancillary.Rd | 94 ecocomDP-1.2.2/ecocomDP/man/create_observation.Rd | 138 ecocomDP-1.2.2/ecocomDP/man/create_observation_ancillary.Rd | 88 ecocomDP-1.2.2/ecocomDP/man/create_taxon.Rd | 110 ecocomDP-1.2.2/ecocomDP/man/create_taxon_ancillary.Rd | 110 ecocomDP-1.2.2/ecocomDP/man/create_variable_mapping.Rd | 158 ecocomDP-1.2.2/ecocomDP/man/flatten_data.Rd | 72 ecocomDP-1.2.2/ecocomDP/man/plot_sample_space_time.Rd | 92 ecocomDP-1.2.2/ecocomDP/man/plot_sites.Rd | 116 ecocomDP-1.2.2/ecocomDP/man/plot_taxa_abund.Rd | 180 ecocomDP-1.2.2/ecocomDP/man/plot_taxa_accum_sites.Rd | 96 ecocomDP-1.2.2/ecocomDP/man/plot_taxa_accum_time.Rd | 96 ecocomDP-1.2.2/ecocomDP/man/plot_taxa_diversity.Rd | 120 ecocomDP-1.2.2/ecocomDP/man/plot_taxa_occur_freq.Rd | 140 ecocomDP-1.2.2/ecocomDP/man/plot_taxa_rank.Rd | 124 ecocomDP-1.2.2/ecocomDP/man/plot_taxa_sample_time.Rd | 42 ecocomDP-1.2.2/ecocomDP/man/plot_taxa_shared_sites.Rd | 94 ecocomDP-1.2.2/ecocomDP/man/read_data.Rd | 234 ecocomDP-1.2.2/ecocomDP/man/save_data.Rd | 112 ecocomDP-1.2.2/ecocomDP/man/search_data.Rd | 150 ecocomDP-1.2.2/ecocomDP/man/validate_data.Rd | 130 ecocomDP-1.2.2/ecocomDP/man/write_tables.Rd | 170 ecocomDP-1.2.2/ecocomDP/tests/testthat.R | 8 ecocomDP-1.2.2/ecocomDP/tests/testthat/test_convert_to_dwca.R | 68 ecocomDP-1.2.2/ecocomDP/tests/testthat/test_create_dataset_summary.R | 216 ecocomDP-1.2.2/ecocomDP/tests/testthat/test_create_eml.R | 106 ecocomDP-1.2.2/ecocomDP/tests/testthat/test_create_location.R | 122 ecocomDP-1.2.2/ecocomDP/tests/testthat/test_create_location_ancillary.R | 60 ecocomDP-1.2.2/ecocomDP/tests/testthat/test_create_observation.R | 74 ecocomDP-1.2.2/ecocomDP/tests/testthat/test_create_observation_ancillary.R | 60 ecocomDP-1.2.2/ecocomDP/tests/testthat/test_create_taxon.R | 66 ecocomDP-1.2.2/ecocomDP/tests/testthat/test_create_taxon_ancillary.R | 70 ecocomDP-1.2.2/ecocomDP/tests/testthat/test_create_variable_mapping.R | 122 ecocomDP-1.2.2/ecocomDP/tests/testthat/test_flatten_data.R | 356 ecocomDP-1.2.2/ecocomDP/tests/testthat/test_plot_taxa.R | 60 ecocomDP-1.2.2/ecocomDP/tests/testthat/test_read_data.R | 508 - ecocomDP-1.2.2/ecocomDP/tests/testthat/test_save_data.R | 158 ecocomDP-1.2.2/ecocomDP/tests/testthat/test_search_data.R | 396 ecocomDP-1.2.2/ecocomDP/tests/testthat/test_utilities.R | 574 - ecocomDP-1.2.2/ecocomDP/tests/testthat/test_validate_arguments.R | 1128 +- ecocomDP-1.2.2/ecocomDP/tests/testthat/test_validate_data.R | 988 +- ecocomDP-1.2.2/ecocomDP/vignettes/convert.Rmd | 178 ecocomDP-1.2.2/ecocomDP/vignettes/create.Rmd | 1180 +- ecocomDP-1.2.2/ecocomDP/vignettes/model_overview.Rmd | 408 ecocomDP-1.2.2/ecocomDP/vignettes/shared_practices_create.Rmd | 704 - ecocomDP-1.2.2/ecocomDP/vignettes/use.Rmd | 678 - 155 files changed, 31398 insertions(+), 29891 deletions(-)
Title: Distances and Routes on Geographical Grids
Description: Provides classes and functions to calculate various
distance measures and routes in heterogeneous geographic
spaces represented as grids. The package implements measures
to model dispersal histories first presented by van Etten and
Hijmans (2010) <doi:10.1371/journal.pone.0012060>. Least-cost
distances as well as more complex distances based on (constrained)
random walks can be calculated. The distances implemented in
the package are used in geographical genetics, accessibility
indicators, and may also have applications in other fields of
geospatial analysis.
Author: Jacob van Etten [aut] ,
Kaue de Sousa [ctb] ,
Andrew Marx [cre, ctb]
Maintainer: Andrew Marx <ajm.rpackages@gmail.com>
Diff between gdistance versions 1.6.2 dated 2023-04-20 and 1.6.4 dated 2023-06-19
DESCRIPTION | 8 MD5 | 106 +++---- NEWS.md | 16 + R/AAATransition-class.R | 44 +- R/Coords-class.R | 12 R/Summary-methods.R | 42 +- R/Transition-extract-replace.R | 54 +-- R/Transition-methods.R | 28 - R/Transition-slots.R | 28 - R/accCost.R | 68 ++-- R/adjacencyFromTransition.R | 39 +- R/coerce.R | 93 +++--- R/commuteDistance.R | 98 +++--- R/costDistance.R | 104 +++--- R/gdistance.R | 8 R/genDist.R | 34 +- R/geoCorrection.R | 241 +++++++--------- R/internal-functions.R | 74 +++- R/normalize.R | 68 ++-- R/pathInc.R | 336 +++++++++++----------- R/probPassage.R | 320 +++++++++------------ R/rSPdistance.R | 88 ++--- R/rasterFromTransition.R | 24 - R/shortestPath.R | 82 ++--- R/show.R | 6 R/stack.R | 12 R/sumT.R | 40 +- R/summary.R | 6 R/transition.R | 568 +++++++++++++++++++++++--------------- inst/doc/Overview.R | 195 ++++++------- inst/doc/Overview.Rmd | 193 ++++++------ inst/doc/Overview.html | 115 ++++--- man/ArithMath-methods.Rd | 6 man/Coords-class.Rd | 5 man/Summary-methods.Rd | 8 man/Transition-classes.Rd | 22 - man/Transition-extract-replace.Rd | 6 man/accCost.Rd | 24 - man/adjacencyFromTransition.Rd | 18 - man/commuteDistance-methods.Rd | 36 +- man/costDistance-methods.Rd | 16 - man/gdistance.Rd | 8 man/genDist.Rd | 14 man/geoCorrection.Rd | 42 +- man/normalize.Rd | 26 - man/overlap.Rd | 2 man/passage.Rd | 44 +- man/pathInc.Rd | 50 +-- man/rSPDistance.Rd | 14 man/rasterFromTransition.Rd | 8 man/shortestPath.Rd | 16 - man/sumReciprocal.Rd | 16 - man/transition.Rd | 54 +-- vignettes/Overview.Rmd | 193 ++++++------ 54 files changed, 1982 insertions(+), 1796 deletions(-)
Title: An Implementation of the Bayesian Markov (Renewal) Mixed Models
Description: The Bayesian Markov renewal mixed models take sequentially observed categorical data with continuous duration times, being either state duration or inter-state duration. These models comprehensively analyze the stochastic dynamics of both state transitions and duration times under the influence of multiple exogenous factors and random individual effect. The default setting flexibly models the transition probabilities using Dirichlet mixtures and the duration times using gamma mixtures. It also provides the flexibility of modeling the categorical sequences using Bayesian Markov mixed models alone, either ignoring the duration times altogether or dividing duration time into multiples of an additional category in the sequence by a user-specific unit. The package allows extensive inference of the state transition probabilities and the duration times as well as relevant plots and graphs. It also includes a synthetic data set to demonstrate the desired format of input data set and the utilit [...truncated...]
Author: Yutong Wu [aut, cre],
Abhra Sarkar [aut]
Maintainer: Yutong Wu <yutong.wu@utexas.edu>
Diff between BMRMM versions 0.0.3 dated 2023-01-21 and 1.0.0 dated 2023-06-19
BMRMM-0.0.3/BMRMM/R/foxp2_sm.R |only BMRMM-0.0.3/BMRMM/data/foxp2_sm.RData |only BMRMM-0.0.3/BMRMM/man/foxp2_sm.Rd |only BMRMM-0.0.3/BMRMM/man/get_duration_diagnostic_plots.Rd |only BMRMM-0.0.3/BMRMM/man/get_estimated_post_mean_and_sd.Rd |only BMRMM-0.0.3/BMRMM/man/get_global_test_results.Rd |only BMRMM-0.0.3/BMRMM/man/get_histogram_by_component.Rd |only BMRMM-0.0.3/BMRMM/man/get_histogram_with_post_mean.Rd |only BMRMM-0.0.3/BMRMM/man/get_lpml_waic_scores.Rd |only BMRMM-0.0.3/BMRMM/man/get_mixture_params.Rd |only BMRMM-0.0.3/BMRMM/man/get_mixture_probs_by_cov.Rd |only BMRMM-0.0.3/BMRMM/man/get_tp_diagnostic_plots.Rd |only BMRMM-0.0.3/BMRMM/man/get_tp_local_test_results.Rd |only BMRMM-1.0.0/BMRMM/DESCRIPTION | 10 BMRMM-1.0.0/BMRMM/MD5 | 45 BMRMM-1.0.0/BMRMM/NAMESPACE | 47 BMRMM-1.0.0/BMRMM/R/BMRMM.R | 235 ++-- BMRMM-1.0.0/BMRMM/R/foxp2.R | 10 BMRMM-1.0.0/BMRMM/R/foxp2sm.R |only BMRMM-1.0.0/BMRMM/R/model_cont_isi.R | 47 BMRMM-1.0.0/BMRMM/R/model_cont_isi_fn.R | 2 BMRMM-1.0.0/BMRMM/R/model_transition.R | 75 - BMRMM-1.0.0/BMRMM/R/model_transition_fn.R | 2 BMRMM-1.0.0/BMRMM/R/print_and_plot_results.R | 758 +++++++--------- BMRMM-1.0.0/BMRMM/R/print_and_plot_results_fn.R | 230 ++-- BMRMM-1.0.0/BMRMM/data/foxp2sm.rda |only BMRMM-1.0.0/BMRMM/man/BMRMM.Rd | 153 +-- BMRMM-1.0.0/BMRMM/man/diag.BMRMM.Rd |only BMRMM-1.0.0/BMRMM/man/foxp2.Rd | 9 BMRMM-1.0.0/BMRMM/man/foxp2sm.Rd |only BMRMM-1.0.0/BMRMM/man/hist.BMRMM.Rd |only BMRMM-1.0.0/BMRMM/man/model.selection.scores.Rd |only BMRMM-1.0.0/BMRMM/man/plot.BMRMMsummary.Rd |only BMRMM-1.0.0/BMRMM/man/summary.BMRMM.Rd |only 34 files changed, 833 insertions(+), 790 deletions(-)
Title: Utilities for Working with Google APIs
Description: Provides utilities for working with Google APIs
<https://developers.google.com/apis-explorer>. This includes
functions and classes for handling common credential types and for
preparing, executing, and processing HTTP requests.
Author: Jennifer Bryan [aut, cre] ,
Craig Citro [aut],
Hadley Wickham [aut] ,
Google Inc [cph],
Posit Software, PBC [cph, fnd]
Maintainer: Jennifer Bryan <jenny@posit.co>
Diff between gargle versions 1.5.0 dated 2023-06-10 and 1.5.1 dated 2023-06-19
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 7 +++++++ R/Gargle-class.R | 15 ++++++++------- R/oauth-init.R | 14 +++++++------- R/oauth-refresh.R | 18 +++++++++--------- R/secret.R | 1 - README.md | 2 +- inst/WORDLIST | 1 + inst/doc/oauth-client-not-app.html | 4 ++-- man/gargle_secret.Rd | 1 - 11 files changed, 48 insertions(+), 41 deletions(-)
Title: 'ATAforecasting' Modelling Interface for 'fable' Framework
Description: Allows ATA (Automatic Time series analysis using the Ata method) models from the 'ATAforecasting' package to be used in a tidy workflow with the modeling interface of
'fabletools'. This extends 'ATAforecasting' to provide enhanced model specification and management, performance evaluation methods, and
model combination tools. The Ata method (Yapar et al. (2019) <doi:10.15672/hujms.461032>), an alternative to exponential smoothing (described in Yapar (2016)
<doi:10.15672/HJMS.201614320580>, Yapar et al. (2017) <doi:10.15672/HJMS.2017.493>), is a new univariate time series forecasting method which provides
innovative solutions to issues faced during the initialization and optimization stages of existing forecasting methods.
Forecasting performance of the Ata method is superior to existing methods both in terms of easy implementation and accurate forecasting.
It can be applied to non-seasonal or seasonal time series which can be decomposed into four components (remainder [...truncated...]
Author: Ali Sabri Taylan [aut, cre, cph]
,
Hanife Taylan Selamlar [aut, cph]
,
Guckan Yapar [aut, ths, cph]
Maintainer: Ali Sabri Taylan <alisabritaylan@gmail.com>
Diff between fable.ata versions 0.0.3 dated 2021-12-09 and 0.0.6 dated 2023-06-19
DESCRIPTION | 20 ++++---- MD5 | 13 +++-- R/fable_ata.R | 107 ++++++++++++++++++++++++----------------------- README.md | 14 +++++- build |only man/AutoATA.Rd | 11 ++-- man/fable.ata-package.Rd | 13 ----- man/forecast.ATA.Rd | 3 + 8 files changed, 95 insertions(+), 86 deletions(-)
Title: Clinical Trial Design and Data Analysis Functions
Description: Utilities to make your clinical collaborations easier if not
fun. It contains functions for designing studies such as Simon
2-stage and group sequential designs and for data analysis such
as Jonckheere-Terpstra test and estimating survival quantiles.
Author: Venkatraman E. Seshan [aut, cre],
Karissa Whiting [aut]
Maintainer: Venkatraman E. Seshan <seshanv@mskcc.org>
Diff between clinfun versions 1.1.1 dated 2023-03-06 and 1.1.2 dated 2023-06-19
DESCRIPTION | 6 +++--- MD5 | 30 +++++++++++++++--------------- NEWS.md | 10 ++++++++++ R/ph2simon.R | 5 +++-- R/roc.curve.R | 20 ++++++++++++++++---- man/roc.curve.Rd | 11 +++++++---- src/calogrank.f | 2 +- src/deltaAUC.f | 22 +++++++++++----------- src/fedesign.f | 20 ++++++++++---------- src/jtpdf.f | 12 ++++++------ src/ktau.f | 8 ++++---- src/lehmann.f | 12 ++++++------ src/ph2simon.f | 6 +++--- src/rocarea.f | 22 +++++++++++----------- src/roccurve.f | 4 ++-- src/stratperm.f | 2 +- 16 files changed, 109 insertions(+), 83 deletions(-)
Title: Influential Cases in Structural Equation Modeling
Description: Sensitivity analysis in structural equation modeling using
influence measures and diagnostic plots. Support leave-one-out casewise
sensitivity analysis presented by Pek and MacCallum (2011)
<doi:10.1080/00273171.2011.561068> and approximate casewise influence
using scores and casewise likelihood.
Author: Shu Fai Cheung [aut, cre] ,
Mark Hok Chio Lai [aut]
Maintainer: Shu Fai Cheung <shufai.cheung@gmail.com>
Diff between semfindr versions 0.1.4 dated 2023-02-17 and 0.1.5 dated 2023-06-19
semfindr-0.1.4/semfindr/tests/testthat/test-est_change_0.R |only semfindr-0.1.4/semfindr/tests/testthat/test-est_change_0_select_by_op.R |only semfindr-0.1.4/semfindr/tests/testthat/test-est_change_approx_0.R |only semfindr-0.1.4/semfindr/tests/testthat/test-est_change_raw_0.R |only semfindr-0.1.4/semfindr/tests/testthat/test-est_change_raw_0_select_by_op.R |only semfindr-0.1.4/semfindr/tests/testthat/test-est_change_raw_0_std.R |only semfindr-0.1.4/semfindr/tests/testthat/test-est_change_raw_approx_0.R |only semfindr-0.1.4/semfindr/tests/testthat/test-est_change_raw_approx_0_labelled.R |only semfindr-0.1.4/semfindr/tests/testthat/test-fit_measurse_change.R |only semfindr-0.1.4/semfindr/tests/testthat/test-fit_measurse_change_approx.R |only semfindr-0.1.4/semfindr/tests/testthat/test-fit_measurse_change_select_by_id.R |only semfindr-0.1.4/semfindr/tests/testthat/test-implied_scores.R |only semfindr-0.1.4/semfindr/tests/testthat/test-implied_scores_no_intercepts.R |only semfindr-0.1.4/semfindr/tests/testthat/test-influence_stat.R |only semfindr-0.1.4/semfindr/tests/testthat/test-influence_stat_for_approx.R |only semfindr-0.1.4/semfindr/tests/testthat/test-influence_stat_select_by_id.R |only semfindr-0.1.4/semfindr/tests/testthat/test-lavaan_rerun_heywood.R |only semfindr-0.1.4/semfindr/tests/testthat/test-lavaan_rerun_nonconvergence.R |only semfindr-0.1.4/semfindr/tests/testthat/test-lavaan_rerun_select_by_id.R |only semfindr-0.1.4/semfindr/tests/testthat/test-lavaan_rerun_select_by_md.R |only semfindr-0.1.4/semfindr/tests/testthat/test-lavaan_rerun_select_by_residual_md.R |only semfindr-0.1.4/semfindr/tests/testthat/test-mahalanobis.R |only semfindr-0.1.4/semfindr/tests/testthat/test-mahalanobis_exo.R |only semfindr-0.1.4/semfindr/tests/testthat/test-mahalanobis_exo_exclude_exo_latent.R |only semfindr-0.1.4/semfindr/tests/testthat/test-mahalanobis_exo_missing.R |only semfindr-0.1.4/semfindr/tests/testthat/test-mahalanobis_exo_observed_to_latent.R |only semfindr-0.1.4/semfindr/tests/testthat/test-mahalanobis_exo_select_md.R |only semfindr-0.1.4/semfindr/tests/testthat/test-mahalanobis_missing.R |only semfindr-0.1.4/semfindr/tests/testthat/test-mahalanobis_select_by_md.R |only semfindr-0.1.5/semfindr/DESCRIPTION | 8 semfindr-0.1.5/semfindr/MD5 | 235 +- semfindr-0.1.5/semfindr/NAMESPACE | 4 semfindr-0.1.5/semfindr/NEWS.md | 42 semfindr-0.1.5/semfindr/R/approx_check.R | 23 semfindr-0.1.5/semfindr/R/data_mg.R |only semfindr-0.1.5/semfindr/R/est_change.R | 88 - semfindr-0.1.5/semfindr/R/est_change_approx.R | 80 semfindr-0.1.5/semfindr/R/est_change_plot.R | 45 semfindr-0.1.5/semfindr/R/est_change_raw.R | 49 semfindr-0.1.5/semfindr/R/est_change_raw_approx.R | 56 semfindr-0.1.5/semfindr/R/fit_measures_change.R | 13 semfindr-0.1.5/semfindr/R/fit_measures_change_approx.R | 51 semfindr-0.1.5/semfindr/R/helpers.R | 107 + semfindr-0.1.5/semfindr/R/implied_scores.R | 143 + semfindr-0.1.5/semfindr/R/influence_stat.R | 37 semfindr-0.1.5/semfindr/R/lavaan_rerun.R | 110 + semfindr-0.1.5/semfindr/R/lavaan_rerun_check.R | 8 semfindr-0.1.5/semfindr/R/mahalanobis_exo.R | 118 - semfindr-0.1.5/semfindr/R/mahalanobis_rerun.R | 191 +- semfindr-0.1.5/semfindr/R/pars_id.R | 294 ++- semfindr-0.1.5/semfindr/R/print_est_change.R |only semfindr-0.1.5/semfindr/R/print_fit_measures_change.R |only semfindr-0.1.5/semfindr/R/print_influence_stat.R |only semfindr-0.1.5/semfindr/R/print_lavaan_rerun.R | 11 semfindr-0.1.5/semfindr/R/print_md_semfindr.R |only semfindr-0.1.5/semfindr/README.md | 7 semfindr-0.1.5/semfindr/build/partial.rdb |binary semfindr-0.1.5/semfindr/build/vignette.rds |binary semfindr-0.1.5/semfindr/data/cfa_dat_mg.rda |only semfindr-0.1.5/semfindr/inst/doc/casewise_scores.R | 4 semfindr-0.1.5/semfindr/inst/doc/casewise_scores.Rmd | 20 semfindr-0.1.5/semfindr/inst/doc/casewise_scores.html | 85 - semfindr-0.1.5/semfindr/inst/doc/selecting_cases.R | 8 semfindr-0.1.5/semfindr/inst/doc/selecting_cases.Rmd | 14 semfindr-0.1.5/semfindr/inst/doc/selecting_cases.html | 86 - semfindr-0.1.5/semfindr/inst/doc/semfindr.R | 60 semfindr-0.1.5/semfindr/inst/doc/semfindr.Rmd | 184 +- semfindr-0.1.5/semfindr/inst/doc/semfindr.html | 808 +++++++--- semfindr-0.1.5/semfindr/inst/doc/user_id.R | 12 semfindr-0.1.5/semfindr/inst/doc/user_id.Rmd | 16 semfindr-0.1.5/semfindr/inst/doc/user_id.html | 233 ++ semfindr-0.1.5/semfindr/man/approx_check.Rd | 16 semfindr-0.1.5/semfindr/man/cfa_dat_mg.Rd |only semfindr-0.1.5/semfindr/man/est_change.Rd | 23 semfindr-0.1.5/semfindr/man/est_change_approx.Rd | 10 semfindr-0.1.5/semfindr/man/est_change_plot.Rd | 2 semfindr-0.1.5/semfindr/man/est_change_raw.Rd | 22 semfindr-0.1.5/semfindr/man/est_change_raw_approx.Rd | 10 semfindr-0.1.5/semfindr/man/figures |only semfindr-0.1.5/semfindr/man/fit_measures_change.Rd | 7 semfindr-0.1.5/semfindr/man/fit_measures_change_approx.Rd | 11 semfindr-0.1.5/semfindr/man/implied_scores.Rd | 20 semfindr-0.1.5/semfindr/man/influence_stat.Rd | 9 semfindr-0.1.5/semfindr/man/lavaan_rerun.Rd | 3 semfindr-0.1.5/semfindr/man/mahalanobis_predictors.Rd | 10 semfindr-0.1.5/semfindr/man/mahalanobis_rerun.Rd | 10 semfindr-0.1.5/semfindr/man/pars_id.Rd | 97 + semfindr-0.1.5/semfindr/man/pars_id_to_lorg.Rd | 22 semfindr-0.1.5/semfindr/man/print.est_change.Rd |only semfindr-0.1.5/semfindr/man/print.fit_measures_change.Rd |only semfindr-0.1.5/semfindr/man/print.influence_stat.Rd |only semfindr-0.1.5/semfindr/man/print.md_semfindr.Rd |only semfindr-0.1.5/semfindr/man/semfindr-package.Rd | 2 semfindr-0.1.5/semfindr/tests/testthat/test-est_change_approx_multi.R |only semfindr-0.1.5/semfindr/tests/testthat/test-est_change_approx_multi_equal.R |only semfindr-0.1.5/semfindr/tests/testthat/test-est_change_approx_single.R |only semfindr-0.1.5/semfindr/tests/testthat/test-est_change_approx_single_equal.R |only semfindr-0.1.5/semfindr/tests/testthat/test-est_change_loo_multi.R |only semfindr-0.1.5/semfindr/tests/testthat/test-est_change_loo_multi_equal.R |only semfindr-0.1.5/semfindr/tests/testthat/test-est_change_loo_multi_select_by_op.R |only semfindr-0.1.5/semfindr/tests/testthat/test-est_change_loo_single.R |only semfindr-0.1.5/semfindr/tests/testthat/test-est_change_loo_single_equal.R |only semfindr-0.1.5/semfindr/tests/testthat/test-est_change_loo_single_select_by_op.R |only semfindr-0.1.5/semfindr/tests/testthat/test-est_change_plot.R | 21 semfindr-0.1.5/semfindr/tests/testthat/test-est_change_print.R |only semfindr-0.1.5/semfindr/tests/testthat/test-est_change_raw_approx_multi.R |only semfindr-0.1.5/semfindr/tests/testthat/test-est_change_raw_approx_multi_equal.R |only semfindr-0.1.5/semfindr/tests/testthat/test-est_change_raw_approx_multi_labelled.R |only semfindr-0.1.5/semfindr/tests/testthat/test-est_change_raw_approx_single.R |only semfindr-0.1.5/semfindr/tests/testthat/test-est_change_raw_approx_single_equal.R |only semfindr-0.1.5/semfindr/tests/testthat/test-est_change_raw_approx_single_labelled.R |only semfindr-0.1.5/semfindr/tests/testthat/test-est_change_raw_loo_multi.R |only semfindr-0.1.5/semfindr/tests/testthat/test-est_change_raw_loo_multi_select_by_op.R |only semfindr-0.1.5/semfindr/tests/testthat/test-est_change_raw_loo_multi_std.R |only semfindr-0.1.5/semfindr/tests/testthat/test-est_change_raw_loo_single.R |only semfindr-0.1.5/semfindr/tests/testthat/test-est_change_raw_loo_single_select_by_op.R |only semfindr-0.1.5/semfindr/tests/testthat/test-est_change_raw_loo_single_std.R |only semfindr-0.1.5/semfindr/tests/testthat/test-fit_measurse_change_multi.R |only semfindr-0.1.5/semfindr/tests/testthat/test-fit_measurse_change_multi_approx.R |only semfindr-0.1.5/semfindr/tests/testthat/test-fit_measurse_change_multi_select_by_id.R |only semfindr-0.1.5/semfindr/tests/testthat/test-fit_measurse_change_print.R |only semfindr-0.1.5/semfindr/tests/testthat/test-fit_measurse_change_single.R |only semfindr-0.1.5/semfindr/tests/testthat/test-fit_measurse_change_single_approx.R |only semfindr-0.1.5/semfindr/tests/testthat/test-fit_measurse_change_single_select_by_id.R |only semfindr-0.1.5/semfindr/tests/testthat/test-full_rank.R |only semfindr-0.1.5/semfindr/tests/testthat/test-implied_scores_multi.R |only semfindr-0.1.5/semfindr/tests/testthat/test-implied_scores_multi_no_intercepts.R |only semfindr-0.1.5/semfindr/tests/testthat/test-implied_scores_single.R |only semfindr-0.1.5/semfindr/tests/testthat/test-implied_scores_single_no_intercepts.R |only semfindr-0.1.5/semfindr/tests/testthat/test-influence_stat_multi.R |only semfindr-0.1.5/semfindr/tests/testthat/test-influence_stat_multi_for_approx.R |only semfindr-0.1.5/semfindr/tests/testthat/test-influence_stat_multi_select_by_id.R |only semfindr-0.1.5/semfindr/tests/testthat/test-influence_stat_print.R |only semfindr-0.1.5/semfindr/tests/testthat/test-influence_stat_single.R |only semfindr-0.1.5/semfindr/tests/testthat/test-influence_stat_single_for_approx.R |only semfindr-0.1.5/semfindr/tests/testthat/test-influence_stat_single_select_by_id.R |only semfindr-0.1.5/semfindr/tests/testthat/test-lavaan_rerun_check.R | 22 semfindr-0.1.5/semfindr/tests/testthat/test-lavaan_rerun_multi.R |only semfindr-0.1.5/semfindr/tests/testthat/test-lavaan_rerun_multi_heywood.R |only semfindr-0.1.5/semfindr/tests/testthat/test-lavaan_rerun_multi_nonconvergence.R |only semfindr-0.1.5/semfindr/tests/testthat/test-lavaan_rerun_multi_select_by_id.R |only semfindr-0.1.5/semfindr/tests/testthat/test-lavaan_rerun_multi_select_by_md.R |only semfindr-0.1.5/semfindr/tests/testthat/test-lavaan_rerun_multi_select_by_residual_md.R |only semfindr-0.1.5/semfindr/tests/testthat/test-lavaan_rerun_single_heywood.R |only semfindr-0.1.5/semfindr/tests/testthat/test-lavaan_rerun_single_nonconvergence.R |only semfindr-0.1.5/semfindr/tests/testthat/test-lavaan_rerun_single_select_by_id.R |only semfindr-0.1.5/semfindr/tests/testthat/test-lavaan_rerun_single_select_by_md.R |only semfindr-0.1.5/semfindr/tests/testthat/test-lavaan_rerun_single_select_by_residual_md.R |only semfindr-0.1.5/semfindr/tests/testthat/test-lavaan_rerun_warnings_print.R |only semfindr-0.1.5/semfindr/tests/testthat/test-mahalanobis_exo_multi.R |only semfindr-0.1.5/semfindr/tests/testthat/test-mahalanobis_exo_multi_exclude_exo_latent.R |only semfindr-0.1.5/semfindr/tests/testthat/test-mahalanobis_exo_multi_missing.R |only semfindr-0.1.5/semfindr/tests/testthat/test-mahalanobis_exo_multi_observed_to_latent.R |only semfindr-0.1.5/semfindr/tests/testthat/test-mahalanobis_exo_multi_select_md.R |only semfindr-0.1.5/semfindr/tests/testthat/test-mahalanobis_exo_single.R |only semfindr-0.1.5/semfindr/tests/testthat/test-mahalanobis_exo_single_exclude_exo_latent.R |only semfindr-0.1.5/semfindr/tests/testthat/test-mahalanobis_exo_single_missing.R |only semfindr-0.1.5/semfindr/tests/testthat/test-mahalanobis_exo_single_observed_to_latent.R |only semfindr-0.1.5/semfindr/tests/testthat/test-mahalanobis_exo_single_select_md.R |only semfindr-0.1.5/semfindr/tests/testthat/test-mahalanobis_multi.R |only semfindr-0.1.5/semfindr/tests/testthat/test-mahalanobis_multi_missing.R |only semfindr-0.1.5/semfindr/tests/testthat/test-mahalanobis_multi_select_by_md.R |only semfindr-0.1.5/semfindr/tests/testthat/test-mahalanobis_print.R |only semfindr-0.1.5/semfindr/tests/testthat/test-mahalanobis_single.R |only semfindr-0.1.5/semfindr/tests/testthat/test-mahalanobis_single_missing.R |only semfindr-0.1.5/semfindr/tests/testthat/test-mahalanobis_single_select_by_md.R |only semfindr-0.1.5/semfindr/tests/testthat/test-parameter_id2.R |only semfindr-0.1.5/semfindr/vignettes/articles |only semfindr-0.1.5/semfindr/vignettes/casewise_scores.Rmd | 20 semfindr-0.1.5/semfindr/vignettes/selecting_cases.Rmd | 14 semfindr-0.1.5/semfindr/vignettes/semfindr.Rmd | 184 +- semfindr-0.1.5/semfindr/vignettes/semfindr_fit_rerun.RDS |binary semfindr-0.1.5/semfindr/vignettes/user_id.Rmd | 16 semfindr-0.1.5/semfindr/vignettes/user_id_fit_rerun.RDS |binary 174 files changed, 2824 insertions(+), 977 deletions(-)
Title: Truncated Maximum Likelihood Fit and Robust Accelerated Failure
Time Regression for Gaussian and Log-Weibull Case
Description: R functions for the computation of the truncated maximum
likelihood and the robust accelerated failure time regression
for gaussian and log-Weibull case.
Author: Alfio Marazzi <Alfio.Marazzi@unisante.ch>, Jean-Luc Muralti
Maintainer: A. Randriamiharisoa <exelami@gmail.com>
Diff between RobustAFT versions 1.4-5 dated 2020-03-06 and 1.4-6 dated 2023-06-19
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 1 + src/robaft.f | 36 ++++++++++++++++++------------------ src/tmlest.f | 6 +++--- 5 files changed, 31 insertions(+), 30 deletions(-)
Title: R Functions for Robust Statistics
Description: Locations problems, M-estimates of coefficients and scale
in linear regression, Weights for bounded influence regression,
Covariance matrix of the coefficient estimates, Asymptotic
relative efficiency of regression M-estimates, Robust testing
in linear models, High breakdown point regression, M-estimates
of covariance matrices, M-estimates for discrete generalized
linear models.
Author: Alfio Marazzi <Alfio.Marazzi@unisante.ch>
Maintainer: A. Randriamiharisoa <exelami@gmail.com>
Diff between robeth versions 2.7-6 dated 2020-03-12 and 2.7-7 dated 2023-06-19
DESCRIPTION | 8 +++--- MD5 | 14 ++++++---- NAMESPACE | 2 - R/dfvals.R | 12 ++++----- man/dfvget.Rd |only man/dfvput.Rd |only src/fastcens.f | 2 - src/regtau.f | 8 +++--- src/robeth.f | 74 ++++++++++++++++++++++++++++----------------------------- 9 files changed, 61 insertions(+), 59 deletions(-)
Title: General Bivariate Copula Theory and Many Utility Functions
Description: Extensive functions for bivariate copula (bicopula) computations and related operations
for bicopula theory. The lower, upper, product, and select other bicopula are implemented along
with operations including the diagonal, survival copula, dual of a copula, co-copula, and
numerical bicopula density. Level sets, horizontal and vertical sections are supported. Numerical
derivatives and inverses of a bicopula are provided through which simulation is implemented.
Bicopula composition, convex combination, asymmetry extension, and products also are provided.
Support extends to the Kendall Function as well as the Lmoments thereof. Kendall Tau,
Spearman Rho and Footrule, Gini Gamma, Blomqvist Beta, Hoeffding Phi, Schweizer-
Wolff Sigma, tail dependency, tail order, skewness, and bivariate Lmoments are implemented, and
positive/negative quadrant dependency, left (right) increasing (decreasing) are available.
Other features include Kullback-Leibler Divergence, Vuong Procedure, spectral measure, [...truncated...]
Author: William Asquith
Maintainer: William Asquith <william.asquith@ttu.edu>
Diff between copBasic versions 2.1.9 dated 2022-08-30 and 2.2.0 dated 2023-06-19
DESCRIPTION | 14 - MD5 | 282 +++++++++++++++++++------------------- NAMESPACE | 1 NEWS | 103 ++++++++++--- R/COP.R | 13 + R/EMPIRsim.R | 2 R/N4212cop.R | 12 - R/PLACKETTcop.R | 16 +- R/PLACKETTsim.R | 12 - R/bilmoms.R | 8 - R/breveCOP.R |only R/composite1COP.R | 9 - R/densityCOPplot.R | 33 ++-- R/diagCOP.R | 8 - R/isCOP.LTD.R | 14 - R/isCOP.RTI.R | 14 - R/isCOP.permsym.R | 4 R/isCOP.radsym.R | 4 R/kullCOP.R | 36 +++- R/mleCOP.R | 26 ++- R/sectionCOP.R | 14 - R/simCOP.R | 12 + R/taildepCOP.R | 2 R/vuongCOP.R | 6 build/partial.rdb |binary inst/CITATION | 14 - man/AMHcop.Rd | 16 +- man/CLcop.Rd | 6 man/COP.Rd | 64 +++++--- man/COPinv.Rd | 7 man/COPinv2.Rd | 6 man/EMPIRcop.Rd | 12 - man/EMPIRcopdf.Rd | 10 - man/EMPIRgrid.Rd | 14 - man/EMPIRgridder.Rd | 8 - man/EMPIRgridder2.Rd | 6 man/EMPIRgridderinv.Rd | 6 man/EMPIRgridderinv2.Rd | 8 - man/EMPIRmed.regress.Rd | 6 man/EMPIRmed.regress2.Rd | 6 man/EMPIRqua.regress.Rd | 6 man/EMPIRqua.regress2.Rd | 6 man/EMPIRsim.Rd | 10 - man/EMPIRsimv.Rd | 8 - man/FGMcop.Rd | 17 +- man/FRECHETcop.Rd | 12 - man/GHcop.Rd | 62 ++++---- man/GLcop.Rd | 26 +-- man/HRcop.Rd | 4 man/JOcopB5.Rd | 6 man/M.Rd | 18 +- man/N4212cop.Rd | 6 man/P.Rd | 21 +- man/PARETOcop.Rd | 6 man/PLACKETTcop.Rd | 23 +-- man/PLACKETTpar.Rd | 23 +-- man/PLACKETTsim.Rd | 6 man/PSP.Rd | 9 - man/RFcop.Rd | 8 - man/ReineckeWell266.Rd | 2 man/ReineckeWells.Rd | 2 man/W.Rd | 18 +- man/aicCOP.Rd | 4 man/asCOP.Rd | 12 - man/bicCOP.Rd | 8 - man/bilmoms.Rd | 77 +++++----- man/blomCOPss.Rd | 12 - man/breveCOP.Rd |only man/coCOP.Rd | 8 - man/composite1COP.Rd | 39 ++--- man/composite2COP.Rd | 20 +- man/composite3COP.Rd | 10 - man/convex2COP.Rd | 8 - man/convexCOP.Rd | 8 - man/copBasic-package.Rd | 26 +-- man/copBasic.fitpara.Rd | 16 +- man/densityCOP.Rd | 16 +- man/densityCOPplot.Rd | 64 ++++---- man/derCOP.Rd | 6 man/derCOP2.Rd | 11 - man/derCOPinv.Rd | 11 - man/derCOPinv2.Rd | 10 - man/diagCOP.Rd | 4 man/diagCOPatf.Rd | 8 - man/duCOP.Rd | 16 +- man/footCOP.Rd | 6 man/gEVcop.Rd | 22 +- man/giniCOP.Rd | 8 - man/glueCOP.Rd | 4 man/gridCOP.Rd | 4 man/hoefCOP.Rd | 6 man/isCOP.LTD.Rd | 4 man/isCOP.PQD.Rd | 4 man/isCOP.RTI.Rd | 4 man/isCOP.permsym.Rd | 6 man/isCOP.radsym.Rd | 12 - man/isfuncCOP.Rd | 6 man/joeskewCOP.Rd | 21 +- man/joint.curvesCOP.Rd | 6 man/joint.curvesCOP2.Rd | 4 man/jointCOP.Rd | 10 - man/kfuncCOP.Rd | 35 ++-- man/kfuncCOPinv.Rd | 6 man/kfuncCOPlmoms.Rd | 16 +- man/kullCOP.Rd | 158 +++++++++++++++------ man/lcomCOP.Rd | 12 - man/lcomCOPpv.Rd | 4 man/lcomoms2.ABKGcop2parameter.Rd | 4 man/lcomoms2.ABcop2parameter.Rd | 6 man/level.curvesCOP.Rd | 4 man/level.curvesCOP2.Rd | 9 - man/level.setCOP.Rd | 4 man/level.setCOP2.Rd | 2 man/med.regressCOP.Rd | 35 ++-- man/med.regressCOP2.Rd | 11 - man/mleCOP.Rd | 88 +++++++---- man/prod2COP.Rd | 20 +- man/psepolar.Rd | 6 man/qua.regressCOP.Rd | 6 man/qua.regressCOP.draw.Rd | 4 man/qua.regressCOP2.Rd | 6 man/rhoCOP.Rd | 11 - man/rhobevCOP.Rd | 14 + man/rmseCOP.Rd | 8 - man/sectionCOP.Rd | 7 man/semicorCOP.Rd | 33 ++-- man/simCOP.Rd | 14 - man/simCOPmicro.Rd | 22 +- man/simcomposite3COP.Rd | 16 +- man/simcompositeCOP.Rd | 6 man/spectralmeas.Rd | 43 +++-- man/stabtaildepf.Rd | 26 +-- man/statTn.Rd | 6 man/surCOP.Rd | 14 - man/surfuncCOP.Rd | 24 +-- man/tEVcop.Rd | 21 +- man/tailconCOP.Rd | 8 - man/taildepCOP.Rd | 22 +- man/tailordCOP.Rd | 6 man/tauCOP.Rd | 14 - man/uvlmoms.Rd | 6 man/vuongCOP.Rd | 56 +++---- man/wolfCOP.Rd | 24 +-- 143 files changed, 1369 insertions(+), 1122 deletions(-)
More information about runMCMCbtadjust at CRAN
Permanent link
Title: Easily Convert GDP Data
Description: A function to convert GDP time series from one unit to
another. All common GDP units are included, i.e. current and constant
local currency units, US$ via market exchange rates and international
dollars via purchasing power parities. Conversion factors can easily
be customized. Conversion at a regional/aggregated level is also
possible.
Author: Johannes Koch [aut, cre]
Maintainer: Johannes Koch <jokoch@pik-potsdam.de>
Diff between GDPuc versions 0.10.0 dated 2023-01-05 and 0.11.0 dated 2023-06-19
DESCRIPTION | 8 +- MD5 | 22 ++--- NEWS.md | 5 + R/get_conversion_factors.R | 18 +--- R/replace_regions_with_countries.R | 2 build/vignette.rds |binary inst/doc/handle_NAs.html | 101 +++++++++++++-------------- inst/doc/source.html | 51 ++++++------- inst/doc/verbose.html | 8 +- tests/testthat/test-composite_conversions.R | 20 ++--- tests/testthat/test-elemental_conversions.R | 40 ++++++++++ tests/testthat/test-get_conversion_factors.R | 5 + 12 files changed, 160 insertions(+), 120 deletions(-)
Title: A Toolkit for Using Whole Building Simulation Program
'EnergyPlus'
Description: A rich toolkit of using the whole building
simulation program 'EnergyPlus'(<https://energyplus.net>), which
enables programmatic navigation, modification of 'EnergyPlus' models
and makes it less painful to do parametric simulations and analysis.
Author: Hongyuan Jia [aut, cre] ,
Adrian Chong [aut]
Maintainer: Hongyuan Jia <hongyuanjia@cqust.edu.cn>
Diff between eplusr versions 0.16.0 dated 2023-05-17 and 0.16.1 dated 2023-06-19
DESCRIPTION | 6 MD5 | 126 - NEWS.md | 2757 +++++++++++++++++++------------------- R/assert.R | 50 R/epw.R | 180 +- R/err.R | 10 R/format.R | 114 - R/geom.R | 76 - R/group.R | 150 +- R/idd.R | 140 - R/iddobj.R | 210 +- R/idf.R | 268 +-- R/idfobj.R | 134 - R/impl-geom.R | 138 - R/impl-idd.R | 54 R/impl-iddobj.R | 8 R/impl-idf.R | 148 +- R/impl-idfobj-sch.R | 60 R/impl-idfobj.R | 16 R/impl-sql.R | 52 R/impl.R | 56 R/install.R | 105 - R/job.R | 116 - R/options.R | 20 R/param.R | 68 R/parse.R | 94 - R/rdd.R | 24 R/run.R | 38 R/sql.R | 44 R/transition.R | 110 - R/units.R | 6 R/utils.R | 79 - R/validate.R | 54 R/viewer.R | 84 - man/EplusJob.Rd | 12 man/EplusSql.Rd | 12 man/ParametricJob.Rd | 16 man/as.character.IdfObject.Rd | 82 - man/assertion.Rd | 182 +- man/clean_wd.Rd | 86 - man/format.IdfObject.Rd | 82 - man/idd_object.Rd | 60 man/install_eplus.Rd | 276 +-- man/path_eplus.Rd | 136 - man/rdd.Rd | 144 - man/read_idf.Rd | 10 man/read_idfeditor_copy.Rd | 70 man/run_model.Rd | 380 ++--- man/transition.Rd | 128 - man/use_eplus.Rd | 159 +- man/use_idd.Rd | 14 man/version_updater.Rd | 118 - man/with_option.Rd | 96 - tests/testthat/helper-cnd.R | 12 tests/testthat/helper-eplus.R | 2 tests/testthat/test-assert.R | 22 tests/testthat/test-idd.R | 30 tests/testthat/test-iddobj.R | 4 tests/testthat/test-impl-viewer.R | 2 tests/testthat/test-install.R | 6 tests/testthat/test-parse.R | 1 tests/testthat/test-run.R | 2 tests/testthat/test-transition.R | 94 - tests/testthat/test-utils.R | 4 64 files changed, 3929 insertions(+), 3908 deletions(-)
More information about DrugUtilisation at CRAN
Permanent link
Title: Make 'Mirai' 'Promises'
Description: Allows 'mirai' objects encapsulating asynchronous computations,
from the 'mirai' package by Gao (2023) <doi:10.5281/zenodo.7912722>, to be
used interchangeably with 'promise' objects from the 'promises' package by
Cheng (2021) <https://CRAN.R-project.org/package=promises>. This facilitates
their use with packages 'plumber' by Schloerke and Allen (2022)
<https://CRAN.R-project.org/package=plumber> and 'shiny' by Cheng, Allaire,
Sievert, Schloerke, Xie, Allen, McPherson, Dipert and Borges (2022)
<https://CRAN.R-project.org/package=shiny>.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between mirai.promises versions 0.1.0 dated 2023-05-31 and 0.1.1 dated 2023-06-19
DESCRIPTION | 9 +++++---- MD5 | 14 +++++++------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/core.R | 12 +++++++++--- README.md | 37 ++++++++++++++++++++++++++++--------- inst/CITATION | 2 +- man/as.promise.mirai.Rd | 9 ++++++--- 8 files changed, 61 insertions(+), 27 deletions(-)
More information about mirai.promises at CRAN
Permanent link
Title: Phase I Control Charts (with Emphasis on Distribution-Free
Methods)
Description: Statistical methods for retrospectively detecting changes
in location and/or dispersion of univariate and multivariate
variables. Data values are assumed to be independent, can be
individual (one observation at each instant of time) or subgrouped
(more than one observation at each instant of time).
Control limits are computed, often using a permutation approach,
so that a prescribed false alarm probability is guaranteed
without making any parametric assumptions on the stable
(in-control) distribution. See G. Capizzi and G. Masarotto (2018)
<doi:10.1007/978-3-319-75295-2_1> for an introduction to the package.
Author: Giovanna Capizzi and Guido Masarotto
Maintainer: Giovanna Capizzi <giovanna.capizzi@unipd.it>
Diff between dfphase1 versions 1.1.4 dated 2021-12-01 and 1.2.0 dated 2023-06-19
DESCRIPTION | 6 MD5 | 28 - NEWS.md | 19 R/RcppExports.R | 118 ++-- R/glr.R | 2 R/mshewhart.R | 38 - R/shewhart.R | 173 ++++-- build/partial.rdb |binary man/mshewhart.Rd | 21 man/shewhart.Rd | 112 +++- src/RcppExports.cpp | 69 ++ src/mphase1.cpp | 1 src/multi.cpp | 1314 ++++++++++++++++++++++++++-------------------------- src/rsp.cpp | 1 src/shewhart.cpp | 390 +++++++++------ 15 files changed, 1298 insertions(+), 994 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-02-28 1.9.9
2022-02-21 1.9.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-06-14 0.2.2
Title: Sampling and Estimation Methods
Description: Functions to take samples of data, sample size estimation and getting useful estimators such as total, mean, proportion about its population using simple random, stratified, systematic and cluster sampling.
Author: Javier Estevez [aut, cre, cph]
Maintainer: Javier Estevez <javier.estase@gmail.com>
Diff between samplingR versions 0.1.5 dated 2023-06-03 and 1.0.0 dated 2023-06-19
samplingR-0.1.5/samplingR/R/sys.estimator.R |only samplingR-0.1.5/samplingR/R/sys.sample.R |only samplingR-0.1.5/samplingR/R/sys.utils.R |only samplingR-0.1.5/samplingR/man/sys.all.samples.Rd |only samplingR-0.1.5/samplingR/man/sys.anova.Rd |only samplingR-0.1.5/samplingR/man/sys.estimator.Rd |only samplingR-0.1.5/samplingR/man/sys.intercorr.Rd |only samplingR-0.1.5/samplingR/man/sys.intracorr.Rd |only samplingR-0.1.5/samplingR/man/sys.sample.Rd |only samplingR-1.0.0/samplingR/DESCRIPTION | 6 +- samplingR-1.0.0/samplingR/MD5 | 36 +++++++------- samplingR-1.0.0/samplingR/NAMESPACE | 12 ++-- samplingR-1.0.0/samplingR/R/strata.allocation.R | 2 samplingR-1.0.0/samplingR/R/strata.samplesize.R | 4 - samplingR-1.0.0/samplingR/R/syst.estimator.R |only samplingR-1.0.0/samplingR/R/syst.sample.R |only samplingR-1.0.0/samplingR/R/syst.utils.R |only samplingR-1.0.0/samplingR/build/vignette.rds |binary samplingR-1.0.0/samplingR/inst/doc/Strata.R | 7 +- samplingR-1.0.0/samplingR/inst/doc/Strata.Rmd | 17 ++++-- samplingR-1.0.0/samplingR/inst/doc/Strata.html | 55 +++++++++++----------- samplingR-1.0.0/samplingR/man/syst.all.samples.Rd |only samplingR-1.0.0/samplingR/man/syst.anova.Rd |only samplingR-1.0.0/samplingR/man/syst.estimator.Rd |only samplingR-1.0.0/samplingR/man/syst.intercorr.Rd |only samplingR-1.0.0/samplingR/man/syst.intracorr.Rd |only samplingR-1.0.0/samplingR/man/syst.sample.Rd |only samplingR-1.0.0/samplingR/vignettes/Strata.Rmd | 17 ++++-- 28 files changed, 83 insertions(+), 73 deletions(-)
Title: Modules to Import and Manipulate Data in 'Shiny'
Description: 'Shiny' modules to import data into an application or 'addin'
from various sources, and to manipulate them after that.
Author: Victor Perrier [aut, cre, cph],
Fanny Meyer [aut],
Samra Goumri [aut],
Zauad Shahreer Abeer [aut],
Eduard Szoecs [ctb]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between datamods versions 1.4.0 dated 2022-11-24 and 1.4.1 dated 2023-06-19
DESCRIPTION | 8 - MD5 | 34 ++++--- NAMESPACE | 1 NEWS.md | 11 ++ R/filter-data.R | 16 ++- R/import-modal.R | 8 - R/select-group.R | 6 - R/show_data.R | 10 -- R/utils.R | 13 ++ README.md | 32 ++++-- build/vignette.rds |binary inst/doc/datamods.R | 18 +++ inst/doc/datamods.Rmd | 34 +++++++ inst/doc/datamods.html | 142 ++++++++++++++++++------------- inst/doc/i18n.html | 111 ++++++++++++------------ inst/i18n/pl.csv |only man/figures/datamods-edit-data.png |only man/figures/i18n/pl.svg |only vignettes/datamods.Rmd | 34 +++++++ vignettes/figures/datamods-edit-data.png |only 20 files changed, 310 insertions(+), 168 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of
use. Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions. Various
matrix decompositions are provided through optional integration with
LAPACK and ATLAS libraries. The 'RcppArmadillo' package includes the
header files from the templated 'Armadillo' library. Thus users do
not need to install 'Armadillo' itself in order to use
'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is licensed
under Apache License 2; previous releases were under licensed as MPL
2.0 from version 3.800.0 onwards and LGPL-3 prior to that;
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed
under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Dirk Eddelbuettel, Romain Francois, Doug Bates, Binxiang Ni, and Conrad Sanderson
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.12.4.0.0 dated 2023-05-27 and 0.12.4.1.0 dated 2023-06-19
ChangeLog | 15 + DESCRIPTION | 8 MD5 | 92 +++---- configure | 18 - configure.ac | 2 inst/NEWS.Rd | 14 + inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-sparseMatrix.pdf |binary inst/include/RcppArmadillo/interface/RcppArmadilloAs.h | 202 +++++------------ inst/include/armadillo_bits/BaseCube_bones.hpp | 6 inst/include/armadillo_bits/BaseCube_meat.hpp | 112 ++++++--- inst/include/armadillo_bits/Base_bones.hpp | 6 inst/include/armadillo_bits/Base_meat.hpp | 164 +++++++++---- inst/include/armadillo_bits/Cube_bones.hpp | 8 inst/include/armadillo_bits/Cube_meat.hpp | 25 +- inst/include/armadillo_bits/Mat_bones.hpp | 8 inst/include/armadillo_bits/Mat_meat.hpp | 11 inst/include/armadillo_bits/SpBase_bones.hpp | 6 inst/include/armadillo_bits/SpBase_meat.hpp | 58 ++++ inst/include/armadillo_bits/SpMat_bones.hpp | 8 inst/include/armadillo_bits/SpMat_meat.hpp | 43 +-- inst/include/armadillo_bits/arma_config.hpp | 7 inst/include/armadillo_bits/arma_version.hpp | 2 inst/include/armadillo_bits/arrayops_meat.hpp | 2 inst/include/armadillo_bits/auxlib_meat.hpp | 72 +++--- inst/include/armadillo_bits/debug.hpp | 1 inst/include/armadillo_bits/fn_accu.hpp | 4 inst/include/armadillo_bits/glue_quantile_meat.hpp | 4 inst/include/armadillo_bits/gmm_diag_meat.hpp | 28 +- inst/include/armadillo_bits/gmm_full_meat.hpp | 26 +- inst/include/armadillo_bits/op_dot_meat.hpp | 2 inst/include/armadillo_bits/op_expmat_meat.hpp | 2 inst/include/armadillo_bits/op_find_meat.hpp | 6 inst/include/armadillo_bits/op_logmat_meat.hpp | 2 inst/include/armadillo_bits/op_mean_meat.hpp | 2 inst/include/armadillo_bits/op_median_meat.hpp | 8 inst/include/armadillo_bits/op_norm2est_meat.hpp | 8 inst/include/armadillo_bits/op_norm_meat.hpp | 6 inst/include/armadillo_bits/op_roots_meat.hpp | 2 inst/include/armadillo_bits/op_sort_meat.hpp | 10 inst/include/armadillo_bits/running_stat_vec_meat.hpp | 4 inst/include/armadillo_bits/sp_auxlib_meat.hpp | 16 - inst/include/armadillo_bits/spop_mean_meat.hpp | 2 inst/include/armadillo_bits/subview_bones.hpp | 5 inst/include/armadillo_bits/subview_cube_bones.hpp | 5 inst/include/armadillo_bits/subview_cube_meat.hpp | 32 ++ inst/include/armadillo_bits/subview_meat.hpp | 28 ++ 47 files changed, 645 insertions(+), 447 deletions(-)
Title: Power Analysis and Data Simulation for Multilevel Models
Description: A declarative language for specifying multilevel models,
solving for population parameters based on specified variance-explained effect
size measures, generating data, and conducting power analyses to determine
sample size recommendations. The specification allows for any number of
within-cluster effects, between-cluster effects, covariate effects
at either level, and random coefficients. Moreover, the models do not
assume orthogonal effects, and predictors can correlate at either level
and accommodate models with multiple interaction effects.
Author: Brian T. Keller [aut, cre, cph]
Maintainer: Brian T. Keller <btkeller@missouri.edu>
Diff between mlmpower versions 1.0.1 dated 2023-05-04 and 1.0.2 dated 2023-06-19
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 4 ++++ README.md | 3 +-- build/vignette.rds |binary 5 files changed, 14 insertions(+), 11 deletions(-)
Title: Fast and Beautiful Interactive Visualization for 'Markdown' and
'Shiny'
Description: Apache licensed alternative to 'Highcharter' which provides
functions for both fast and beautiful interactive visualization for 'Markdown'
and 'Shiny'.
Author: Mauricio Vargas Sepulveda [aut, cre, cph],
John Coene [aut],
Riva Quiroga [ctb],
Ariel Alvarado [ctb],
Sylvain Lesage [ctb],
Curran Kelleher [ctb],
Fernando Becerra [ctb],
Natural Earth [dtc],
R Consortium [fnd]
Maintainer: Mauricio Vargas Sepulveda <m.sepulveda@mail.utoronto.ca>
Diff between d3po versions 0.3.4 dated 2023-03-03 and 0.5.5 dated 2023-06-19
d3po-0.3.4/d3po/R/d3po-api.R |only d3po-0.3.4/d3po/R/d3po-graph.R |only d3po-0.3.4/d3po/R/d3po.R |only d3po-0.3.4/d3po/man/d3po_graph.Rd |only d3po-0.5.5/d3po/DESCRIPTION | 20 d3po-0.5.5/d3po/MD5 | 125 + d3po-0.5.5/d3po/NAMESPACE | 22 d3po-0.5.5/d3po/NEWS.md | 26 d3po-0.5.5/d3po/R/aes.R | 91 - d3po-0.5.5/d3po/R/api.R |only d3po-0.5.5/d3po/R/assertions.R | 18 d3po-0.5.5/d3po/R/d3po-package.R | 1 d3po-0.5.5/d3po/R/data.R | 39 d3po-0.5.5/d3po/R/map_ids.r |only d3po-0.5.5/d3po/R/methods.R |only d3po-0.5.5/d3po/R/shiny.R |only d3po-0.5.5/d3po/R/template.R |only d3po-0.5.5/d3po/R/utils.R | 59 d3po-0.5.5/d3po/README.md | 158 -- d3po-0.5.5/d3po/build/vignette.rds |binary d3po-0.5.5/d3po/data/maps.rda |only d3po-0.5.5/d3po/data/pokemon.rda |binary d3po-0.5.5/d3po/data/pokemon_network.rda |only d3po-0.5.5/d3po/inst/doc/d3po.R | 199 +- d3po-0.5.5/d3po/inst/doc/d3po.Rmd | 233 +-- d3po-0.5.5/d3po/inst/doc/d3po.html | 1432 ++----------------- d3po-0.5.5/d3po/inst/htmlwidgets/d3po.js | 35 d3po-0.5.5/d3po/inst/htmlwidgets/d3po.yaml | 7 d3po-0.5.5/d3po/inst/htmlwidgets/lib/d3po.min.js | 2 d3po-0.5.5/d3po/inst/htmlwidgets/lib/topojson.min.js |only d3po-0.5.5/d3po/inst/rstudio |only d3po-0.5.5/d3po/inst/shinyexample |only d3po-0.5.5/d3po/man/d3po-exports.Rd |only d3po-0.5.5/d3po/man/d3po-shiny.Rd | 2 d3po-0.5.5/d3po/man/d3po.Rd | 2 d3po-0.5.5/d3po/man/d3po_template.Rd |only d3po-0.5.5/d3po/man/daes.Rd | 1 d3po-0.5.5/d3po/man/map_ids.Rd |only d3po-0.5.5/d3po/man/maps.Rd |only d3po-0.5.5/d3po/man/po_area.Rd | 39 d3po-0.5.5/d3po/man/po_background.Rd | 2 d3po-0.5.5/d3po/man/po_bar.Rd | 36 d3po-0.5.5/d3po/man/po_box.Rd | 7 d3po-0.5.5/d3po/man/po_donut.Rd |only d3po-0.5.5/d3po/man/po_font.Rd | 4 d3po-0.5.5/d3po/man/po_geomap.Rd |only d3po-0.5.5/d3po/man/po_labels.Rd | 18 d3po-0.5.5/d3po/man/po_legend.Rd | 2 d3po-0.5.5/d3po/man/po_line.Rd | 38 d3po-0.5.5/d3po/man/po_network.Rd |only d3po-0.5.5/d3po/man/po_pie.Rd | 36 d3po-0.5.5/d3po/man/po_scatter.Rd | 57 d3po-0.5.5/d3po/man/po_title.Rd | 2 d3po-0.5.5/d3po/man/po_treemap.Rd | 36 d3po-0.5.5/d3po/man/pokemon_network.Rd |only d3po-0.5.5/d3po/vignettes/d3po.Rmd | 233 +-- 56 files changed, 1073 insertions(+), 1909 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-06-05 2.3.0
2023-01-06 2.2.0
2022-12-08 2.1.0
2022-03-25 2.0.2
Title: Use Image in 'ggplot2'
Description: Supports image files and graphic objects to be visualized in
'ggplot2' graphic system.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between ggimage versions 0.3.2 dated 2023-04-02 and 0.3.3 dated 2023-06-19
DESCRIPTION | 6 +- MD5 | 6 +- NAMESPACE | 5 - R/geom_image.R | 162 +++++++++++++++++++++++++++++---------------------------- 4 files changed, 89 insertions(+), 90 deletions(-)