Title: 'Rcpp' Bindings for 'Annoy', a Library for Approximate Nearest
Neighbors
Description: 'Annoy' is a small C++ library for Approximate Nearest Neighbors
written for efficient memory usage as well an ability to load from / save to
disk. This package provides an R interface by relying on the 'Rcpp' package,
exposing the same interface as the original Python wrapper to 'Annoy'. See
<https://github.com/spotify/annoy> for more on 'Annoy'. 'Annoy' is released
under Version 2.0 of the Apache License. Also included is a small Windows
port of 'mmap' which is released under the MIT license.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppAnnoy versions 0.0.20 dated 2022-10-27 and 0.0.21 dated 2023-07-02
RcppAnnoy-0.0.20/RcppAnnoy/inst/doc/UsingAnnoyInCcppWrapper.Rnw |only RcppAnnoy-0.0.20/RcppAnnoy/inst/doc/UsingAnnoyInCcppWrapper.pdf |only RcppAnnoy-0.0.20/RcppAnnoy/vignettes/UsingAnnoyInCcppWrapper.Rnw |only RcppAnnoy-0.0.21/RcppAnnoy/ChangeLog | 32 ++ RcppAnnoy-0.0.21/RcppAnnoy/DESCRIPTION | 8 RcppAnnoy-0.0.21/RcppAnnoy/MD5 | 28 +- RcppAnnoy-0.0.21/RcppAnnoy/README.md | 1 RcppAnnoy-0.0.21/RcppAnnoy/build/vignette.rds |binary RcppAnnoy-0.0.21/RcppAnnoy/inst/NEWS.Rd | 9 RcppAnnoy-0.0.21/RcppAnnoy/inst/doc/UsingAnnoyInCppWrapper.Rnw |only RcppAnnoy-0.0.21/RcppAnnoy/inst/doc/UsingAnnoyInCppWrapper.pdf |only RcppAnnoy-0.0.21/RcppAnnoy/inst/include/RcppAnnoy.h | 8 RcppAnnoy-0.0.21/RcppAnnoy/inst/include/annoylib.h | 117 ++++++---- RcppAnnoy-0.0.21/RcppAnnoy/inst/rmd/UsingAnnoyInCpp.Rmd | 4 RcppAnnoy-0.0.21/RcppAnnoy/src/Makevars | 14 - RcppAnnoy-0.0.21/RcppAnnoy/src/annoy.cpp | 19 - RcppAnnoy-0.0.21/RcppAnnoy/vignettes/UsingAnnoyInCpp.pdf |binary RcppAnnoy-0.0.21/RcppAnnoy/vignettes/UsingAnnoyInCppWrapper.Rnw |only 18 files changed, 153 insertions(+), 87 deletions(-)
Title: Statistical Inference in Partial Linear Regression Models
Description: Contains statistical inference tools applied to Partial Linear Regression (PLR) models. Specifically, point estimation, confidence intervals estimation, bandwidth selection, goodness-of-fit tests and analysis of covariance are considered. Kernel-based methods, combined with ordinary least squares estimation, are used and time series errors are allowed. In addition, these techniques are also implemented for both parametric (linear) and nonparametric regression models.
Author: German Aneiros Perez and Ana Lopez-Cheda
Maintainer: Ana Lopez-Cheda <ana.lopez.cheda@udc.es>
Diff between PLRModels versions 1.2 dated 2022-07-14 and 1.3 dated 2023-07-02
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- man/Epanechnikov.Rd | 2 +- man/best.arima.Rd | 2 +- man/gaussian.Rd | 2 +- man/quadratic.Rd | 2 +- man/symsolve.Rd | 2 +- man/triweight.Rd | 2 +- man/uniform.Rd | 2 +- man/var.cov.matrix.Rd | 2 +- man/var.cov.sum.Rd | 2 +- 11 files changed, 23 insertions(+), 23 deletions(-)
Title: Rational Approximations of Fractional Stochastic Partial
Differential Equations
Description: Functions that compute rational approximations of fractional elliptic stochastic partial differential equations. The package also contains functions for common statistical usage of these approximations. The main references for rSPDE are Bolin, Simas and Xiong (2023) <doi:10.1080/10618600.2023.2231051> for the covariance-based method and Bolin and Kirchner (2020) <doi:10.1080/10618600.2019.1665537> for the operator-based rational approximation. These can be generated by the citation function in R.
Author: David Bolin [cre, aut],
Alexandre Simas [aut],
Finn Lindgren [ctb]
Maintainer: David Bolin <davidbolin@gmail.com>
Diff between rSPDE versions 2.3.1 dated 2023-05-25 and 2.3.2 dated 2023-07-02
DESCRIPTION | 15 MD5 | 71 - NAMESPACE | 2 NEWS.md | 7 R/fractional.computations.R | 132 ++- R/fractional.operators.R | 30 R/inla_rspde.R | 266 +++++- R/inlabru_rspde.R | 3 R/intrinsic.R |only R/operator.operations.R | 40 R/rspde_lme.R | 10 R/util.R | 24 inst/CITATION | 28 inst/doc/build_source.html | 106 +- inst/doc/build_source.html.asis | 3 inst/doc/rSPDE.html | 587 ++++++++------ inst/doc/rSPDE.html.asis | 3 inst/doc/rspde_base.html | 16 inst/doc/rspde_base.html.asis | 3 inst/doc/rspde_cov.html | 581 +++++++------- inst/doc/rspde_cov.html.asis | 3 inst/doc/rspde_inla.html | 1230 +++++++++++++++--------------- inst/doc/rspde_inla.html.asis | 3 inst/doc/rspde_inlabru.html | 603 +++++++------- inst/doc/rspde_inlabru.html.asis | 3 man/intrinsic.matern.operators.Rd |only man/matern.operators.Rd | 5 man/rspde.matern.Rd | 4 man/rspde.result.Rd | 16 man/variogram.intrinsic.spde.Rd |only tests/testthat/test.CBrSPDE.R | 2 tests/testthat/test.operator.operations.R | 28 vignettes/build_source.html.asis | 3 vignettes/rSPDE.html.asis | 3 vignettes/rspde_base.html.asis | 3 vignettes/rspde_cov.html.asis | 3 vignettes/rspde_inla.html.asis | 3 vignettes/rspde_inlabru.html.asis | 3 38 files changed, 2124 insertions(+), 1718 deletions(-)
Title: Neo-Normal Distributions Family for Markov Chain Monte Carlo
(MCMC) Models in 'JAGS'
Description: A 'JAGS' extension module provides neo-normal distributions
family including MSNBurr, MSNBurr-IIa, GMSNBurr, Lunetta Exponential Power,
Fernandez-Steel Skew t, Fernandez-Steel Skew Normal, Fernandez-Osiewalski-Steel
Skew Exponential Power, Jones Skew Exponential Power.
References:
Choir, A. S. (2020). "The New Neo-Normal Distributions and Their Properties".Unpublished Dissertation.
Denwood, M.J. (2016) <doi:10.18637/jss.v071.i09>.
Fernandez, C., Osiewalski, J., & Steel, M. F. (1995) <doi:10.1080/01621459.1995.10476637>.
Fernandez, C., & Steel, M. F. (1998) <doi:10.1080/01621459.1998.10474117>.
Iriawan, N. (2000). "Computationally Intensive Approaches to Inference in NeoNormal Linear Models".Unpublished Dissertation.
Mineo, A., & Ruggieri, M. (2005) <doi:10.18637/jss.v012.i04>.
Rigby, R. A., & Stasinopoulos, D. M. (2005) <doi:10.1111/j.1467-9876.2005.00510.x>.
Lunetta, G. (1963). "Di una Generalizzazione dello Schema della Curva Normale".
Ri [...truncated...]
Author: Achmad Syahrul Choir [aut, cre],
Resi Ramadani [aut],
Nur Iriawan [aut],
S Sifa'ul Khusna Malikhatul Mutmainah [ctb],
Matthew Denwood [cph],
Martyn Plummer [cph]
Maintainer: Achmad Syahrul Choir <madsyair@stis.ac.id>
Diff between neojags versions 0.1.1 dated 2023-06-29 and 0.1.2 dated 2023-07-02
neojags-0.1.1/neojags/src/Makevars00 |only neojags-0.1.2/neojags/CHANGELOG |only neojags-0.1.2/neojags/DESCRIPTION | 6 neojags-0.1.2/neojags/INSTALL | 21 - neojags-0.1.2/neojags/MD5 | 21 - neojags-0.1.2/neojags/R/example.R | 9 neojags-0.1.2/neojags/README.md |only neojags-0.1.2/neojags/build/vignette.rds |binary neojags-0.1.2/neojags/configure | 4 neojags-0.1.2/neojags/configure.ac | 8 neojags-0.1.2/neojags/inst/doc/vignettes.html | 20 - neojags-0.1.2/neojags/src/Makevars.win | 2 neojags-0.1.2/neojags/tests/checkmodule.R | 400 ++++++++++++-------------- 13 files changed, 233 insertions(+), 258 deletions(-)
Title: Cluster-Based Permutation Analysis for Densely Sampled Time Data
Description: An implementation of fast cluster-based permutation analysis
(CPA) for densely-sampled time data developed in Maris & Oostenveld,
2007 <doi:10.1016/j.jneumeth.2007.03.024>. Supports (generalized,
mixed-effects) regression models for the calculation of timewise
statistics. Provides both a wholesale and a piecemeal interface to the
CPA procedure with an emphasis on interpretability and diagnostics.
Integrates 'Julia' libraries 'MixedModels.jl' and 'GLM.jl' for
performance improvements, with additional functionalities for
interfacing with 'Julia' from 'R' powered by the 'JuliaConnectoR'
package.
Author: June Choe [aut, cre, cph]
Maintainer: June Choe <jchoe001@gmail.com>
Diff between jlmerclusterperm versions 1.0.0 dated 2023-06-27 and 1.0.1 dated 2023-07-02
DESCRIPTION | 8 MD5 | 75 ++--- NAMESPACE | 1 NEWS.md | 8 R/aaa.R | 18 + R/calculate_pvalue.R | 222 ++++++++--------- R/clusterpermute.R | 170 ++++++------- R/compute_timewise_statistics.R | 234 +++++++++--------- R/extract_clusters.R | 328 ++++++++++++------------- R/interop-utils.R | 118 ++++----- R/jlmer.R | 234 +++++++++--------- R/julia_rng.R | 160 ++++++------ R/permute.R | 174 ++++++------- R/permute_timewise_statistics.R | 352 +++++++++++++-------------- R/threshold_search.R | 130 +++++----- R/tidy.R | 480 ++++++++++++++++++------------------- README.md | 56 +++- inst/doc/jlmerclusterperm.Rmd | 6 inst/doc/jlmerclusterperm.html | 8 man/calculate_clusters_pvalues.Rd | 2 man/cluster_permutation_tidiers.Rd | 2 man/clusterpermute.Rd | 2 man/compute_timewise_statistics.Rd | 2 man/extract_empirical_clusters.Rd | 2 man/extract_null_cluster_dists.Rd | 2 man/jlmer.Rd | 2 man/jlmerclusterperm-package.Rd | 2 man/jlmerclusterperm_setup.Rd | 68 ++--- man/julia_model_tidiers.Rd | 2 man/julia_progress.Rd | 2 man/julia_rng.Rd | 2 man/julia_setup_ok.Rd |only man/permute_by_predictor.Rd | 2 man/permute_timewise_statistics.Rd | 2 man/to_jlmer.Rd | 2 man/walk_threshold_steps.Rd | 2 tests/testthat/helper-skip.R | 5 tests/testthat/test-aaa.R | 2 vignettes/jlmerclusterperm.Rmd | 6 39 files changed, 1478 insertions(+), 1415 deletions(-)
More information about jlmerclusterperm at CRAN
Permanent link
Title: Reproducible Data Retrieval from the Roper Center Data Archive
Description: Reproducible, programmatic retrieval of datasets from the
Roper Center data archive. The Roper Center for Public Opinion
Research <https://ropercenter.cornell.edu> maintains the largest
archive of public opinion data in existence, but researchers using
these datasets are caught in a bind. The Center's terms and conditions
bar redistribution of downloaded datasets, but to ensure that one's
work can be reproduced, assessed, and built upon by others, one must
provide access to the raw data one employed. The `ropercenter`
package cuts this knot by providing registered users with programmatic,
reproducible access to Roper Center datasets from within R.
Author: Frederick Solt [aut, cre, cph],
Jennifer Lin [ctb],
Paul Gronke [ctb],
Dave Peterson [ctb]
Maintainer: Frederick Solt <frederick-solt@uiowa.edu>
Diff between ropercenter versions 0.3.1 dated 2020-07-26 and 0.3.2 dated 2023-07-02
DESCRIPTION | 24 +- MD5 | 24 +- NAMESPACE | 16 + NEWS.md | 3 R/read_ascii.R | 29 +-- R/roper_download.R | 58 ++++-- R/zzz.R | 2 README.md | 14 - build/vignette.rds |binary inst/doc/ropercenter-vignette.Rmd | 10 - inst/doc/ropercenter-vignette.html | 345 ++++++++++++++++++++++++------------- man/read_ascii.Rd | 2 vignettes/ropercenter-vignette.Rmd | 10 - 13 files changed, 354 insertions(+), 183 deletions(-)
Title: Nested Cross-Validation with 'glmnet' and 'caret'
Description: Implements nested k*l-fold cross-validation for lasso and elastic-net regularised linear models via the 'glmnet' package and other machine learning models via the 'caret' package. Cross-validation of 'glmnet' alpha mixing parameter and embedded fast filter functions for feature selection are provided. Described as double cross-validation by Stone (1977) <doi:10.1111/j.2517-6161.1977.tb01603.x>. Also implemented is a method using outer CV to measure unbiased model performance metrics when fitting Bayesian linear and logistic regression shrinkage models using the horseshoe prior over parameters to encourage a sparse model as described by Piironen & Vehtari (2017) <doi:10.1214/17-EJS1337SI>.
Author: Myles Lewis [aut, cre] ,
Athina Spiliopoulou [aut] ,
Katriona Goldmann [aut]
Maintainer: Myles Lewis <myles.lewis@qmul.ac.uk>
Diff between nestedcv versions 0.6.6 dated 2023-06-07 and 0.6.7 dated 2023-07-02
DESCRIPTION | 8 - MD5 | 60 ++++++------ NAMESPACE | 17 +-- NEWS.md | 39 +++++++ R/filters.R | 180 +++++++++++++++++++++++++----------- R/nestcv.train.R | 10 +- R/nestedcv.R | 3 R/one_hot.R |only R/outercv.R | 2 R/plots.R | 4 R/stat_filter.R |only README.md | 3 build/vignette.rds |binary inst/doc/nestedcv.R | 27 +++++ inst/doc/nestedcv.Rmd | 79 +++++++++++++++- inst/doc/nestedcv.html | 205 ++++++++++++++++++++++++++++++------------ inst/doc/nestedcv_hsstan.html | 26 +---- inst/doc/nestedcv_shap.Rmd | 9 + inst/doc/nestedcv_shap.html | 40 ++++---- man/anova_filter.Rd | 17 ++- man/combo_filter.Rd | 2 man/correl_filter.Rd | 21 +++- man/lm_filter.Rd | 16 ++- man/one_hot.Rd |only man/outercv.Rd | 2 man/ranger_filter.Rd | 2 man/relieff_filter.Rd | 2 man/rf_filter.Rd | 2 man/stat_filter.Rd |only man/ttest_filter.Rd | 10 +- man/wilcoxon_filter.Rd | 10 +- vignettes/nestedcv.Rmd | 79 +++++++++++++++- vignettes/nestedcv_shap.Rmd | 9 + 33 files changed, 660 insertions(+), 224 deletions(-)
Title: Qualitative Validation Methods
Description: Qualitative methods for the validation of dynamic models.
It contains (i) an orthogonal set of deviance measures for absolute,
relative and ordinal scale and (ii) approaches accounting for time
shifts. The first approach transforms time to take time delays and speed
differences into account. The second divides the time series into
interval units according to their main features and finds the longest
common subsequence (LCS) using a dynamic programming algorithm.
Author: K. Gerald van den Boogaart [aut, ths]
,
Stefanie Rost [aut],
Thomas Petzoldt [aut, ths, cre]
Maintainer: Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Diff between qualV versions 0.3-4 dated 2021-10-07 and 0.3-5 dated 2023-07-02
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/LCS.R | 6 +++--- build/partial.rdb |binary data/phyto.rda |binary inst/CITATION | 9 +++++---- inst/NEWS | 3 +++ man/GRI.Rd | 5 +++-- 8 files changed, 24 insertions(+), 19 deletions(-)
Title: Useful Wrappers Around Commonly Used Functions
Description: The main functionalities of 'wrappedtools' are:
adding backticks to variable names; rounding to desired precision
with special case for p-values;
selecting columns based on pattern and storing their position, name,
and backticked name; computing and formatting of descriptive statistics
(e.g. meanĀ±SD), comparing groups and creating publication-ready tables with
descriptive statistics and p-values; creating specialized plots for
correlation matrices. Functions were mainly written for my own daily work or
teaching, but may be of use to others as well.
Author: Andreas Busjahn [cre, aut] ,
Bilal Asser [aut]
Maintainer: Andreas Busjahn <andreas@busjahn.net>
Diff between wrappedtools versions 0.9.1 dated 2023-03-28 and 0.9.2 dated 2023-07-02
DESCRIPTION | 8 +- MD5 | 27 +++++---- NAMESPACE | 2 NEWS.md | 4 + R/basefunctions.R | 115 ++++++++++++++++++++++++++++++++++++---- R/descriptives.R | 124 +++++++++++++++++++++++++++++++++++--------- R/tests.R | 2 README.md | 7 +- build/vignette.rds |binary inst/doc/wrappedtools.html | 108 +++++++++++++++++++------------------- man/ColSeeker.Rd |only man/FindVars.Rd | 6 +- man/cat_desc_table.Rd |only man/compare2qualvars.Rd | 2 man/figures/logo.png |only man/wrappedtools-package.Rd | 2 16 files changed, 295 insertions(+), 112 deletions(-)
Title: Schedule R Scripts and Processes with the Windows Task Scheduler
Description: Schedule R scripts/processes with the Windows task scheduler. This
allows R users to automate R processes on specific time points from R itself.
Author: Jan Wijffels [aut, cre, cph],
BNOSAC [cph],
Oliver Belmans [cph, aut]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between taskscheduleR versions 1.7 dated 2023-02-01 and 1.8 dated 2023-07-02
DESCRIPTION | 6 +- MD5 | 10 ++-- R/taskscheduleR.R | 25 ++++++++++- inst/NEWS | 3 + inst/doc/taskscheduleR.html | 94 ++++++++++++++++++++++---------------------- man/taskscheduler_create.Rd | 5 +- 6 files changed, 84 insertions(+), 59 deletions(-)
Title: Computation of Optimal Transport Plans and Wasserstein Distances
Description: Solve optimal transport problems. Compute Wasserstein distances (a.k.a. Kantorovitch, Fortet--Mourier, Mallows, Earth Mover's, or minimal L_p distances), return the corresponding transference plans, and display them graphically. Objects that can be compared include grey-scale images, (weighted) point patterns, and mass vectors.
Author: Dominic Schuhmacher [aut, cre],
Bjoern Baehre [aut] ,
Nicolas Bonneel [aut] ,
Carsten Gottschlich [aut] ,
Valentin Hartmann [aut] ,
Florian Heinemann [aut] ,
Bernhard Schmitzer [aut] ,
Joern Schrieber [aut] ,
Timo Wilm [ctb]
Maintainer: Dominic Schuhmacher <dominic.schuhmacher@mathematik.uni-goettingen.de>
Diff between transport versions 0.14-4 dated 2023-06-25 and 0.14-6 dated 2023-07-02
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 23 ++++++++++++++++++++++- build/partial.rdb |binary man/transport.Rd | 4 ++-- tests/testthat/test-main.R | 15 ++++++++++++--- 6 files changed, 45 insertions(+), 15 deletions(-)
Title: A System of Plotting Optimized for Speed and Modularity
Description: A high-level plotting system, compatible with `ggplot2` objects,
maps from `sf`, `terra`, `raster`, `sp`. It is built primarily on the
'grid' package. The objective of the package is to provide a plotting system
that is built for speed and modularity. This is useful for quick visualizations
when testing code and for plotting multiple figures to the same device from
independent sources that may be independent of one another (i.e., different
function or modules the create the visualizations). The suggested package
'fastshp' can be installed from the repository
(<https://PredictiveEcology.r-universe.dev>).
Author: Eliot J B McIntire [aut, cre] ,
Alex M Chubaty [aut] ,
His Majesty the King in Right of Canada, as represented by the Minister
of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>
Diff between quickPlot versions 1.0.1 dated 2023-06-12 and 1.0.2 dated 2023-07-02
DESCRIPTION | 12 MD5 | 31 +- NAMESPACE | 5 NEWS.md | 11 R/plotting-colours.R | 7 R/plotting-helpers.R | 444 ++++++++++++++++++---------------- R/plotting.R | 49 ++- build/vignette.rds |binary inst/WORDLIST | 15 + inst/doc/iii-plotting.html | 46 +-- inst/examples/example_makeLines.R | 10 man/Plot-internal.Rd | 9 man/coordinates.Rd |only man/extent.Rd |only man/layerNames.Rd | 3 man/makeLines.Rd | 10 tests/testthat/_snaps/Plot/test51.png |only tests/testthat/helper-testInit.R | 2 18 files changed, 372 insertions(+), 282 deletions(-)
Title: A Pairwise Likelihood Augmented Cox Estimator for Left-Truncated
Data
Description: A semi-parametric estimation method for the Cox model
with left-truncated data using augmented information
from the marginal of truncation times.
Author: Fan Wu [aut, cre]
Maintainer: Fan Wu <fannwu@umich.edu>
Diff between plac versions 0.1.1 dated 2016-04-29 and 0.1.3 dated 2023-07-02
DESCRIPTION | 15 +-- MD5 | 42 ++++----- NAMESPACE | 2 R/RcppExports.R | 80 +++++++++--------- R/comp.est.R | 54 +++++------- R/data.gen.R | 195 ++++++++++++++++++++++++--------------------- R/plac.R | 5 - README.md | 111 +++++++++++++++++++------ man/PLAC.Rd | 89 ++++++++++---------- man/PLAC_TD.Rd | 1 man/PLAC_TDR.Rd | 1 man/PLAC_TI.Rd | 1 man/PwInd.Rd | 5 - man/SgInd.Rd | 1 man/TvInd.Rd | 1 man/TvInd2.Rd | 3 man/cum.haz.Rd | 3 man/plac-package.Rd | 6 - man/plr.Rd | 3 man/sim.ltrc.Rd | 50 ++++++++--- src/RcppExports.cpp | 141 ++++++++++++++++++-------------- tests/testthat/test_PLAC.R | 11 +- 22 files changed, 464 insertions(+), 356 deletions(-)
Title: Covariate Assisted Spectral Clustering on Ratios of Eigenvectors
Description: Functions for implementing the novel algorithm CASCORE, which is designed to detect latent community structure in graphs with node covariates. This algorithm can handle models such as the covariate-assisted degree corrected stochastic block model (CADCSBM). CASCORE specifically addresses the disagreement between the community structure inferred from the adjacency information and the community structure inferred from the covariate information. For more detailed information, please refer to the reference paper: Yaofang Hu and Wanjie Wang (2022) <arXiv:2306.15616>.
In addition to CASCORE, this package includes several classical community detection algorithms that are compared to CASCORE in our paper. These algorithms are: Spectral Clustering On Ratios-of Eigenvectors (SCORE), normalized PCA, ordinary PCA, network-based clustering, covariates-based clustering and covariate-assisted spectral clustering (CASC). By providing these additional algorithms, the package enables users to comp [...truncated...]
Author: Yaofang Hu [aut, cre],
Wanjie Wang [aut]
Maintainer: Yaofang Hu <yaofangh@smu.edu>
Diff between CASCORE versions 0.1.1 dated 2022-10-02 and 0.1.2 dated 2023-07-02
DESCRIPTION | 18 +++++++-------- MD5 | 20 ++++++++++------ NAMESPACE | 2 + R/CASCORE.R | 48 +++++++++++++++++++++++++--------------- R/Cov_based.R |only R/Net_based.R |only build/partial.rdb |binary man/CASCORE.Rd | 20 ++++++++-------- man/Cov_based.Rd |only man/Net_based.Rd |only tests/testthat/test-ADMM.R | 4 +-- tests/testthat/test-Cov_based.R |only tests/testthat/test-Net_based.R |only tests/testthat/test-SCORE.R | 3 -- 14 files changed, 67 insertions(+), 48 deletions(-)