Title: Common Plots for Analysis
Description: Select data analysis plots, under a standardized calling interface implemented on top of 'ggplot2' and 'plotly'.
Plots of interest include: 'ROC', gain curve, scatter plot with marginal distributions,
conditioned scatter plot with marginal densities,
box and stem with matching theoretical distribution, and density with matching theoretical distribution.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between WVPlots versions 1.3.5 dated 2023-08-09 and 1.3.7 dated 2023-08-19
WVPlots-1.3.5/WVPlots/man/WVPlots.Rd |only WVPlots-1.3.7/WVPlots/DESCRIPTION | 8 ++++---- WVPlots-1.3.7/WVPlots/MD5 | 19 ++++++++++--------- WVPlots-1.3.7/WVPlots/NEWS.md | 7 +++++++ WVPlots-1.3.7/WVPlots/R/ROC.R | 2 +- WVPlots-1.3.7/WVPlots/R/WVPlots.R | 5 ++--- WVPlots-1.3.7/WVPlots/build/partial.rdb |only WVPlots-1.3.7/WVPlots/build/vignette.rds |binary WVPlots-1.3.7/WVPlots/inst/doc/WVPlots_concept.html | 4 ++-- WVPlots-1.3.7/WVPlots/inst/doc/WVPlots_examples.html | 4 ++-- WVPlots-1.3.7/WVPlots/man/ROCPlot.Rd | 2 +- WVPlots-1.3.7/WVPlots/man/WVPlots-package.Rd |only 12 files changed, 29 insertions(+), 22 deletions(-)
Title: Avoid the Typical Working Directory Pain When Using 'knitr'
Description: An extension of 'knitr' that adds flexibility in several
ways. One common source of frustration with 'knitr' is that it assumes
the directory where the source file lives should be the working directory,
which is often not true. 'ezknitr' addresses this problem by giving you
complete control over where all the inputs and outputs are, and adds several
other convenient features to make rendering markdown/HTML documents easier.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between ezknitr versions 0.6.2 dated 2023-05-24 and 0.6.3 dated 2023-08-19
ezknitr-0.6.2/ezknitr/R/ezknitr.R |only ezknitr-0.6.2/ezknitr/man/ezknitr.Rd |only ezknitr-0.6.3/ezknitr/DESCRIPTION | 9 +++-- ezknitr-0.6.3/ezknitr/MD5 | 16 ++++----- ezknitr-0.6.3/ezknitr/NEWS.md | 4 ++ ezknitr-0.6.3/ezknitr/R/ezknitr-package.R |only ezknitr-0.6.3/ezknitr/man/ezknitr-package.Rd |only ezknitr-0.6.3/ezknitr/man/ezknitr_core.Rd | 39 ++++++++++++++++++------ ezknitr-0.6.3/ezknitr/man/open_output_dir.Rd | 1 ezknitr-0.6.3/ezknitr/man/set_default_params.Rd | 1 ezknitr-0.6.3/ezknitr/man/setup_test.Rd | 3 - 11 files changed, 48 insertions(+), 25 deletions(-)
Title: Ecological Drift under the UNTB
Description: Hubbell's Unified Neutral Theory of Biodiversity.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between untb versions 1.7-4 dated 2019-03-03 and 1.7-7 dated 2023-08-19
untb-1.7-4/untb/inst/doc/untbpaper.R |only untb-1.7-4/untb/inst/doc/untbpaper.Rnw |only untb-1.7-4/untb/inst/doc/untbpaper.pdf |only untb-1.7-4/untb/vignettes/untbpaper.Rnw |only untb-1.7-7/untb/DESCRIPTION | 8 ++-- untb-1.7-7/untb/MD5 | 62 +++++++++++++++++--------------- untb-1.7-7/untb/R/sysdata.rda |binary untb-1.7-7/untb/README.md |only untb-1.7-7/untb/build/vignette.rds |binary untb-1.7-7/untb/data/butterflies.rda |binary untb-1.7-7/untb/data/caruso.rda |binary untb-1.7-7/untb/data/copepod.rda |binary untb-1.7-7/untb/data/ghats.rda |binary untb-1.7-7/untb/data/ostracod.rda |binary untb-1.7-7/untb/data/sahfos.rda |binary untb-1.7-7/untb/data/saunders.rda |binary untb-1.7-7/untb/data/spitale.rda |binary untb-1.7-7/untb/inst/CITATION | 14 ++----- untb-1.7-7/untb/inst/doc/untb.R |only untb-1.7-7/untb/inst/doc/untb.Rnw |only untb-1.7-7/untb/inst/doc/untb.pdf |only untb-1.7-7/untb/man/census.Rd | 10 ++--- untb-1.7-7/untb/man/count.Rd | 13 +++--- untb-1.7-7/untb/man/display.untb.Rd | 3 + untb-1.7-7/untb/man/extractor.Rd | 4 +- untb-1.7-7/untb/man/figures |only untb-1.7-7/untb/man/logkda.Rd | 19 +++++---- untb-1.7-7/untb/man/no.of.ind.Rd | 14 +++---- untb-1.7-7/untb/man/plot.count.Rd | 2 - untb-1.7-7/untb/man/plus.Rd | 8 ++-- untb-1.7-7/untb/man/preston.Rd | 3 + untb-1.7-7/untb/man/rand.neutral.Rd | 2 - untb-1.7-7/untb/man/saunders.Rd | 14 +++++-- untb-1.7-7/untb/man/untb.package.Rd | 9 ---- untb-1.7-7/untb/vignettes/untb.Rnw |only 35 files changed, 97 insertions(+), 88 deletions(-)
Title: Succinct and Correct Statistical Summaries for Reports
Description: Succinctly and correctly format statistical summaries of
various models and tests (F-test, Chi-Sq-test, Fisher-test, T-test, and rank-significance).
This package also includes empirical tests, such as Monte Carlo and bootstrap distribution estimates.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between sigr versions 1.1.4 dated 2021-06-12 and 1.1.5 dated 2023-08-19
sigr-1.1.4/sigr/man/sigr.Rd |only sigr-1.1.5/sigr/DESCRIPTION | 12 sigr-1.1.5/sigr/MD5 | 27 - sigr-1.1.5/sigr/NEWS.md | 4 sigr-1.1.5/sigr/R/ROC.R | 2 sigr-1.1.5/sigr/R/sigr.R | 4 sigr-1.1.5/sigr/README.md | 52 +- sigr-1.1.5/sigr/build/partial.rdb |only sigr-1.1.5/sigr/build/vignette.rds |binary sigr-1.1.5/sigr/inst/doc/lmExample.html | 369 +++++++++++++----- sigr-1.1.5/sigr/inst/doc/sigrFormatting.Rmd | 2 sigr-1.1.5/sigr/inst/doc/sigrFormatting.html | 553 ++++++++++++++++++--------- sigr-1.1.5/sigr/man/find_matching_a1_1b.Rd | 2 sigr-1.1.5/sigr/man/reexports.Rd | 2 sigr-1.1.5/sigr/man/sigr-package.Rd |only sigr-1.1.5/sigr/vignettes/sigrFormatting.Rmd | 2 16 files changed, 721 insertions(+), 310 deletions(-)
Title: Relational Query Generator for Data Manipulation at Scale
Description: A piped query generator based on Edgar F. Codd's relational
algebra, and on production experience using 'SQL' and 'dplyr' at big data
scale. The design represents an attempt to make 'SQL' more teachable by
denoting composition by a sequential pipeline notation instead of nested
queries or functions. The implementation delivers reliable high
performance data processing on large data systems such as 'Spark',
databases, and 'data.table'. Package features include: data processing trees
or pipelines as observable objects (able to report both columns
produced and columns used), optimized 'SQL' generation as an explicit
user visible table modeling step, plus explicit query reasoning and checking.
Author: John Mount [aut, cre],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between rquery versions 1.4.9 dated 2022-02-28 and 1.4.99 dated 2023-08-19
rquery-1.4.9/rquery/man/rquery.Rd |only rquery-1.4.99/rquery/DESCRIPTION | 14 rquery-1.4.99/rquery/MD5 | 36 rquery-1.4.99/rquery/NEWS.md | 4 rquery-1.4.99/rquery/R/package.R | 5 rquery-1.4.99/rquery/README.md | 164 +- rquery-1.4.99/rquery/build/vignette.rds |binary rquery-1.4.99/rquery/inst/doc/AssigmentPartitioner.html | 606 +++++++--- rquery-1.4.99/rquery/inst/doc/Parameterized_rquery.Rmd | 2 rquery-1.4.99/rquery/inst/doc/Parameterized_rquery.html | 494 +++++--- rquery-1.4.99/rquery/inst/doc/PipeableSQL.html | 956 ++++++++++------ rquery-1.4.99/rquery/inst/doc/QueryGeneration.html | 397 +++++- rquery-1.4.99/rquery/inst/doc/R_mapping.html | 510 ++++++-- rquery-1.4.99/rquery/inst/doc/rquery_intro.html | 758 +++++++++--- rquery-1.4.99/rquery/inst/doc/rquery_many_columns.html | 532 ++++++-- rquery-1.4.99/rquery/inst/doc/sql_quoting.html | 442 +++++-- rquery-1.4.99/rquery/man/db_td.Rd | 4 rquery-1.4.99/rquery/man/mk_td.Rd | 4 rquery-1.4.99/rquery/man/rquery-package.Rd |only rquery-1.4.99/rquery/vignettes/Parameterized_rquery.Rmd | 2 20 files changed, 3468 insertions(+), 1462 deletions(-)
Title: 'Rcpp' Dynamic Programming
Description: Dynamic Programming implemented in 'Rcpp'. Includes example partition and out of sample fitting applications. Also supplies additional custom coders for the 'vtreat' package.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between RcppDynProg versions 0.2.0 dated 2020-12-15 and 0.2.1 dated 2023-08-19
RcppDynProg-0.2.0/RcppDynProg/man/RcppDynProg.Rd |only RcppDynProg-0.2.1/RcppDynProg/DESCRIPTION | 10 RcppDynProg-0.2.1/RcppDynProg/MD5 | 28 RcppDynProg-0.2.1/RcppDynProg/NEWS.md | 6 RcppDynProg-0.2.1/RcppDynProg/R/package.R | 4 RcppDynProg-0.2.1/RcppDynProg/README.md | 54 - RcppDynProg-0.2.1/RcppDynProg/build/vignette.rds |binary RcppDynProg-0.2.1/RcppDynProg/inst/doc/RcppDynProg.html | 23 RcppDynProg-0.2.1/RcppDynProg/inst/doc/Segmentation.html | 454 ++++++-------- RcppDynProg-0.2.1/RcppDynProg/inst/doc/SegmentationL.html | 302 +++------ RcppDynProg-0.2.1/RcppDynProg/man/RcppDynProg-package.Rd |only RcppDynProg-0.2.1/RcppDynProg/src/RcppExports.cpp | 5 RcppDynProg-0.2.1/RcppDynProg/tools/README-r1-1.png |binary RcppDynProg-0.2.1/RcppDynProg/tools/README-r2-1.png |binary RcppDynProg-0.2.1/RcppDynProg/tools/README-rb1-1.png |binary RcppDynProg-0.2.1/RcppDynProg/tools/README-rg1-1.png |binary 16 files changed, 403 insertions(+), 483 deletions(-)
Title: Easily Gate or Select Points on a Scatter Plot
Description: Allows user to choose/gate a region on the plot and returns points
within it.
Author: Wajid Jawaid [aut, cre]
Maintainer: Wajid Jawaid <wj241@alumni.cam.ac.uk>
Diff between gatepoints versions 0.1.4 dated 2021-02-23 and 0.1.5 dated 2023-08-19
DESCRIPTION | 9 +- MD5 | 10 +- R/gatepoints-package.r | 1 build/vignette.rds |binary inst/doc/gatepoints.html | 185 ++++++++++++++++++++--------------------------- man/gatepoints.Rd | 12 +++ 6 files changed, 103 insertions(+), 114 deletions(-)
Title: Convolution of Gamma Distributions
Description: Evaluation for density and distribution function of convolution of gamma
distributions in R. Two related exact methods and one approximate method are
implemented with efficient algorithm and C++ code. A quick guide for choosing
correct method and usage of this package is given in package vignette. For the
detail of methods used in this package, we refer the user to
Mathai(1982)<doi:10.1007/BF02481056>,
Moschopoulos(1984)<doi:10.1007/BF02481123>,
Barnabani(2017)<doi:10.1080/03610918.2014.963612>,
Hu et al.(2020)<doi:10.1007/s00180-019-00924-9>.
Author: Chaoran Hu [aut, cre],
Vladimir Pozdnyakov [ths],
Jun Yan [ths]
Maintainer: Chaoran Hu <chaoran.hu@uconn.edu>
Diff between coga versions 1.1.1 dated 2021-10-07 and 1.2.0 dated 2023-08-19
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NEWS.md | 8 ++++++++ R/coga.R | 1 + build/vignette.rds |binary configure | 18 +++++++++--------- configure.ac | 2 +- inst/CITATION | 29 +++++++++++++++-------------- man/coga.Rd | 1 + 9 files changed, 48 insertions(+), 37 deletions(-)
Title: A Collection of Statistical Tools for Biologists
Description: Contains functions from: Aho, K. (2014) Foundational and Applied Statistics for Biologists using R. CRC/Taylor and Francis, Boca Raton, FL, ISBN: 978-1-4398-7338-0.
Author: Ken Aho
Maintainer: Ken Aho <kenaho1@gmail.com>
Diff between asbio versions 1.9-2 dated 2023-03-28 and 1.9-6 dated 2023-08-19
asbio-1.9-2/asbio/inst/doc/ranef.cov.R |only asbio-1.9-2/asbio/inst/doc/ranef.cov.pdf |only asbio-1.9-2/asbio/inst/doc/ranef.cov.rnw |only asbio-1.9-2/asbio/inst/doc/simpson.R |only asbio-1.9-2/asbio/inst/doc/simpson.rnw |only asbio-1.9-2/asbio/vignettes/ranef.cov.rnw |only asbio-1.9-2/asbio/vignettes/simpson.rnw |only asbio-1.9-6/asbio/DESCRIPTION | 10 ++-- asbio-1.9-6/asbio/MD5 | 67 ++++++++++++++-------------- asbio-1.9-6/asbio/R/MCfunctions.r | 6 +- asbio-1.9-6/asbio/R/book.menu.r | 6 +- asbio-1.9-6/asbio/R/ci.mu.R | 26 +++++----- asbio-1.9-6/asbio/R/ci.mu.oneside.R | 14 ++--- asbio-1.9-6/asbio/R/one.sample.t.R | 26 ++++++++-- asbio-1.9-6/asbio/R/one.sample.z.R | 26 ++++++++-- asbio-1.9-6/asbio/R/pairs.panel.functions.R | 2 asbio-1.9-6/asbio/R/skew.kurt.r | 7 ++ asbio-1.9-6/asbio/build/vignette.rds |binary asbio-1.9-6/asbio/inst/doc/ranefCov.Rnw |only asbio-1.9-6/asbio/inst/doc/ranefCov.pdf |only asbio-1.9-6/asbio/inst/doc/simpson.Rnw |only asbio-1.9-6/asbio/inst/doc/simpson.pdf |binary asbio-1.9-6/asbio/inst/doc/typeISS_key.Rnw |only asbio-1.9-6/asbio/inst/doc/typeISS_key.pdf |only asbio-1.9-6/asbio/man/BCI.count.rd | 3 - asbio-1.9-6/asbio/man/BCI.plant.rd | 12 +++-- asbio-1.9-6/asbio/man/R.hat.rd | 2 asbio-1.9-6/asbio/man/anscombe.rd | 2 asbio-1.9-6/asbio/man/ci.mu.Rd | 7 +- asbio-1.9-6/asbio/man/ci.mu.oneside.rd | 8 +-- asbio-1.9-6/asbio/man/one.sample.t.rd | 7 ++ asbio-1.9-6/asbio/man/one.sample.z.Rd | 9 ++- asbio-1.9-6/asbio/man/paik.rd | 6 +- asbio-1.9-6/asbio/man/pairw.anova.Rd | 4 - asbio-1.9-6/asbio/man/panel.cor.res.Rd | 6 +- asbio-1.9-6/asbio/man/partial.resid.plot.rd | 2 asbio-1.9-6/asbio/man/r.dist.rd | 4 - asbio-1.9-6/asbio/man/see.lmu.tck.rd | 8 +++ asbio-1.9-6/asbio/man/world.co2.Rd | 2 asbio-1.9-6/asbio/vignettes/ranefCov.Rnw |only asbio-1.9-6/asbio/vignettes/simpson.Rnw |only asbio-1.9-6/asbio/vignettes/typeISS_key.Rnw |only 42 files changed, 166 insertions(+), 106 deletions(-)
Title: Fluid Data Transformations
Description: Supplies higher-order coordinatized data specification and fluid transform operators that include pivot and anti-pivot as special cases.
The methodology is describe in 'Zumel', 2018, "Fluid data reshaping with 'cdata'", <https://winvector.github.io/FluidData/FluidDataReshapingWithCdata.html> , <DOI:10.5281/zenodo.1173299> .
This package introduces the idea of explicit control table specification of data transforms.
Works on in-memory data or on remote data using 'rquery' and 'SQL' database interfaces.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between cdata versions 1.2.0 dated 2021-06-12 and 1.2.1 dated 2023-08-19
cdata-1.2.0/cdata/man/cdata.Rd |only cdata-1.2.1/cdata/DESCRIPTION | 14 cdata-1.2.1/cdata/MD5 | 28 cdata-1.2.1/cdata/NEWS.md | 4 cdata-1.2.1/cdata/R/package.R | 5 cdata-1.2.1/cdata/build/vignette.rds |binary cdata-1.2.1/cdata/inst/doc/blocksrecs.html | 624 +++++++--- cdata-1.2.1/cdata/inst/doc/cdata.html | 506 ++++++-- cdata-1.2.1/cdata/inst/doc/control_table_keys.html | 555 ++++++--- cdata-1.2.1/cdata/inst/doc/design.html | 625 +++++++--- cdata-1.2.1/cdata/inst/doc/exercises.Rmd | 2 cdata-1.2.1/cdata/inst/doc/exercises.html | 1263 +++++++++++++-------- cdata-1.2.1/cdata/inst/doc/general_transform.html | 663 +++++++---- cdata-1.2.1/cdata/inst/doc/operators.html | 561 ++++++--- cdata-1.2.1/cdata/man/cdata-package.Rd |only cdata-1.2.1/cdata/vignettes/exercises.Rmd | 2 16 files changed, 3368 insertions(+), 1484 deletions(-)
Title: Extracts Environmental Data from 'ERDDAP' Web Services
Description: Contains three functions that access
environmental data from any 'ERDDAP' data web service. The rxtracto() function extracts
data along a trajectory for a given "radius" around the point. The
rxtracto_3D() function extracts data in a box. The rxtractogon() function
extracts data in a polygon. All of those three function use the 'rerddap' package
to extract the data, and should work with any 'ERDDAP' server.
There are also two functions, plotBBox() and plotTrack() that use the 'plotdap'
package to simplify the creation of maps of the data.
Author: Roy Mendelssohn [aut, cre],
Marie Auger-Methe [ctb]
Maintainer: Roy Mendelssohn <roy.mendelssohn@noaa.gov>
Diff between rerddapXtracto versions 1.1.4 dated 2022-12-13 and 1.1.5 dated 2023-08-19
DESCRIPTION | 8 MD5 | 12 NEWS.md | 3 R/rerddapXtracto.R | 4 build/vignette.rds |binary inst/doc/UsingrerddapXtracto.html | 522 +++++++++++++++++++------------------- man/rerddapXtracto.Rd | 19 + 7 files changed, 297 insertions(+), 271 deletions(-)
More information about rerddapXtracto at CRAN
Permanent link
Title: Multivariate Independent Comparison of Observations
Description: A procedure for comparing multivariate samples associated with
different groups. It uses principal component analysis to convert
multivariate observations into a set of linearly uncorrelated statistical
measures, which are then compared using a number of statistical methods. The
procedure is independent of the distributional properties of samples and
automatically selects features that best explain their differences, avoiding
manual selection of specific points or summary statistics. It is appropriate
for comparing samples of time series, images, spectrometric measures or
similar multivariate observations. This package is described in Fachada et
al. (2016) <doi:10.32614/RJ-2016-055>.
Author: Nuno Fachada [aut, cre]
Maintainer: Nuno Fachada <faken@fakenmc.com>
Diff between micompr versions 1.1.3 dated 2023-02-12 and 1.1.4 dated 2023-08-19
micompr-1.1.3/micompr/R/micompr.R |only micompr-1.1.3/micompr/man/micompr.Rd |only micompr-1.1.4/micompr/DESCRIPTION | 7 +++---- micompr-1.1.4/micompr/MD5 | 15 ++++++++------- micompr-1.1.4/micompr/R/micompr-package.R |only micompr-1.1.4/micompr/README.md | 2 +- micompr-1.1.4/micompr/build/partial.rdb |only micompr-1.1.4/micompr/build/vignette.rds |binary micompr-1.1.4/micompr/inst/doc/paper.pdf |binary micompr-1.1.4/micompr/inst/doc/tolatex-examples.pdf |binary micompr-1.1.4/micompr/man/micompr-package.Rd |only 11 files changed, 12 insertions(+), 12 deletions(-)
Title: Diversity Through Hill Numbers
Description: Calculate taxonomic, functional and phylogenetic diversity measures
through Hill Numbers proposed by Chao, Chiu and Jost (2014)
<doi:10.1146/annurev-ecolsys-120213-091540>.
Author: Daijiang Li
Maintainer: Daijiang Li <daijianglee@gmail.com>
Diff between hillR versions 0.5.1 dated 2021-03-02 and 0.5.2 dated 2023-08-19
DESCRIPTION | 11 +-- MD5 | 34 +++++----- R/hill_func.R | 8 ++ R/hill_func_parti.R | 2 R/hill_phylo.R | 4 - R/hill_phylo_parti.R | 20 ++---- R/hill_phylo_parti_pairwise.R | 7 +- R/hill_taxa.R | 2 R/hill_taxa_parti.R | 2 R/zzz.R | 1 README.md | 130 +++++++++++++++++++++--------------------- inst/CITATION | 8 +- man/hillR.Rd | 1 man/hill_func.Rd | 2 man/hill_func_parti.Rd | 2 man/hill_phylo_parti.Rd | 4 - man/hill_taxa.Rd | 2 man/hill_taxa_parti.Rd | 2 18 files changed, 124 insertions(+), 118 deletions(-)
Title: Wildlife Sightability Modeling
Description: Uses logistic regression to model the probability of detection as a function of covariates.
This model is then used with observational survey data to estimate population size, while
accounting for uncertain detection. See Steinhorst and Samuel (1989).
Author: Fieberg John [aut],
Schwarz Carl James [aut, cre]
Maintainer: Schwarz Carl James <cschwarz.stat.sfu.ca@gmail.com>
Diff between SightabilityModel versions 1.5.3 dated 2023-05-01 and 1.5.5 dated 2023-08-19
DESCRIPTION | 8 MD5 | 20 NEWS.md | 4 R/data.R | 8 build/vignette.rds |binary inst/doc/a-SightabilityModel.pdf |binary inst/doc/c-MoosePopR-SightabilityPopR-Demo.html | 592 +++++----- inst/doc/d-DomainStratification-method-of-Heard-2008-source.R | 9 inst/doc/d-DomainStratification-method-of-Heard-2008.html | 381 +++--- man/SightabilityModel-package.Rd | 7 man/obs.m.Rd | 2 11 files changed, 513 insertions(+), 518 deletions(-)
More information about SightabilityModel at CRAN
Permanent link
Title: Regularized PQL for Joint Selection in GLMMs
Description: Performs joint selection in Generalized Linear Mixed Models (GLMMs) using penalized likelihood methods. Specifically, the Penalized Quasi-Likelihood (PQL) is used as a loss function, and penalties are then augmented to perform simultaneous fixed and random effects selection. Regularized PQL avoids the need for integration (or approximations such as the Laplace's method) during the estimation process, and so the full solution path for model selection can be constructed relatively quickly.
Author: Francis K.C. Hui <francis.hui@gmail.com>, with contributions from Samuel Mueller <samuel.mueller@sydney.edu.au> and A.H. Welsh <Alan.Welsh@anu.edu.au>
Maintainer: Francis Hui <fhui28@gmail.com>
Diff between rpql versions 0.8 dated 2020-06-16 and 0.8.1 dated 2023-08-19
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/rpql-main.R | 15 ++++++--------- build/partial.rdb |binary inst/CITATION | 23 ++++++++++++++--------- inst/NEWS.Rd | 8 +++----- man/rpql-package.Rd | 4 ++-- src/Makevars | 2 +- src/Makevars.win | 2 +- 9 files changed, 39 insertions(+), 39 deletions(-)
Title: Binary Classifier and Regression Model Interpretation Functions
Description: Compute permutation- based performance measures and create partial
dependence plots for (cross-validated) 'randomForest' and 'ada' models.
Author: Michel Ballings and Dirk Van den Poel
Maintainer: Michel Ballings <michel.ballings@GMail.com>
Diff between interpretR versions 0.2.4 dated 2016-03-19 and 0.2.5 dated 2023-08-19
DESCRIPTION | 9 +++++---- MD5 | 12 ++++++------ inst/NEWS | 3 +++ man/interpretR-package.Rd | 9 --------- man/interpretRNews.Rd | 9 ++++----- man/parDepPlot.Rd | 38 ++++++++++++++++++++++++++------------ man/variableImportance.Rd | 21 +++++++++++++-------- 7 files changed, 57 insertions(+), 44 deletions(-)
Title: Fisherian and Neymanian Methods for Detecting and Measuring
Treatment Effect Variation
Description: Implements methods developed by Ding, Feller, and Miratrix (2016) <doi:10.1111/rssb.12124> <arXiv:1412.5000>,
and Ding, Feller, and Miratrix (2018) <doi:10.1080/01621459.2017.1407322> <arXiv:1605.06566>
for testing whether there is unexplained variation in treatment effects across observations, and for characterizing
the extent of the explained and unexplained variation in treatment effects. The package includes wrapper functions
implementing the proposed methods, as well as helper functions for analyzing and visualizing the results of the test.
Author: Peng Ding [aut],
Avi Feller [aut],
Ben Fifield [aut, cre],
Luke Miratrix [aut]
Maintainer: Ben Fifield <benfifield@gmail.com>
Diff between hettx versions 0.1.2 dated 2023-02-15 and 0.1.3 dated 2023-08-19
DESCRIPTION | 8 - MD5 | 10 +- R/hettx-package.R | 3 inst/doc/detect_idiosyncratic_vignette.html | 90 +++++++++--------- inst/doc/estimate_systematic_vignette.html | 136 ++++++++++++++-------------- man/hettx-package.Rd | 3 6 files changed, 122 insertions(+), 128 deletions(-)
Title: Compute Risk Scores for Cardiovascular Diseases
Description: Calculate various cardiovascular disease risk scores from the
Framingham Heart Study (FHS), the American College of Cardiology (ACC),
and the American Heart Association (AHA) as described in D’agostino, et al
(2008) <doi:10.1161/circulationaha.107.699579>, Goff, et al (2013)
<doi:10.1161/01.cir.0000437741.48606.98>, and Mclelland, et al (2015)
<doi:10.1016/j.jacc.2015.08.035>.
Author: Victor Castro [aut, cre]
Maintainer: Victor Castro <vcastro@mgh.harvard.edu>
Diff between CVrisk versions 1.1.0 dated 2021-12-06 and 1.1.1 dated 2023-08-19
CVrisk-1.1.0/CVrisk/R/CVrisk.R |only CVrisk-1.1.0/CVrisk/man/CVrisk.Rd |only CVrisk-1.1.1/CVrisk/DESCRIPTION | 8 ++++---- CVrisk-1.1.1/CVrisk/MD5 | 13 +++++++------ CVrisk-1.1.1/CVrisk/NEWS.md | 5 +++++ CVrisk-1.1.1/CVrisk/R/CVrisk-package.R |only CVrisk-1.1.1/CVrisk/README.md | 1 + CVrisk-1.1.1/CVrisk/build |only CVrisk-1.1.1/CVrisk/man/CVrisk-package.Rd |only CVrisk-1.1.1/CVrisk/man/compute_CVrisk.Rd | 4 ++-- 10 files changed, 19 insertions(+), 12 deletions(-)
Title: Calculate Federal and State Income Taxes in the United States
Description: Calculates federal and state income taxes in the United States. It acts as a wrapper
to the NBER's TAXSIM 35 (<http://taxsim.nber.org/taxsim35/>) tax simulator. TAXSIM 35 conducts
the calculations, while 'usincometaxes' prepares the data for TAXSIM 35, sends the data to
TAXSIM 35's server or communicates with the Web Assembly file, retrieves the data, and places it
into a data frame. All without the user worrying about this process.
Author: Shane Orr [aut, cre, cph],
Thomas Wells [ctb]
Maintainer: Shane Orr <shane.j.orr@gmail.com>
Diff between usincometaxes versions 0.6.0 dated 2023-01-23 and 0.7.0 dated 2023-08-19
usincometaxes-0.6.0/usincometaxes/man/usincometaxes.Rd |only usincometaxes-0.6.0/usincometaxes/vignettes/webimg |only usincometaxes-0.7.0/usincometaxes/DESCRIPTION | 8 usincometaxes-0.7.0/usincometaxes/LICENSE | 4 usincometaxes-0.7.0/usincometaxes/MD5 | 119 usincometaxes-0.7.0/usincometaxes/NAMESPACE | 8 usincometaxes-0.7.0/usincometaxes/NEWS.md | 128 usincometaxes-0.7.0/usincometaxes/R/calculate_taxes.R | 438 usincometaxes-0.7.0/usincometaxes/R/data.R | 22 usincometaxes-0.7.0/usincometaxes/R/usincometaxes.R | 19 usincometaxes-0.7.0/usincometaxes/R/utils_check_data.R | 622 usincometaxes-0.7.0/usincometaxes/R/utils_clean_data.R | 362 usincometaxes-0.7.0/usincometaxes/R/utils_connect_server.R | 66 usincometaxes-0.7.0/usincometaxes/README.md | 346 usincometaxes-0.7.0/usincometaxes/build/vignette.rds |binary usincometaxes-0.7.0/usincometaxes/inst/doc/send-data-to-taxsim.R | 42 usincometaxes-0.7.0/usincometaxes/inst/doc/send-data-to-taxsim.Rmd | 86 usincometaxes-0.7.0/usincometaxes/inst/doc/send-data-to-taxsim.html | 1088 - usincometaxes-0.7.0/usincometaxes/inst/doc/taxsim-input.R | 12 usincometaxes-0.7.0/usincometaxes/inst/doc/taxsim-input.Rmd | 282 usincometaxes-0.7.0/usincometaxes/inst/doc/taxsim-input.html | 900 usincometaxes-0.7.0/usincometaxes/inst/doc/taxsim-output.R | 12 usincometaxes-0.7.0/usincometaxes/inst/doc/taxsim-output.Rmd | 186 usincometaxes-0.7.0/usincometaxes/inst/doc/taxsim-output.html | 739 usincometaxes-0.7.0/usincometaxes/inst/doc/using-usincometaxes.R | 392 usincometaxes-0.7.0/usincometaxes/inst/doc/using-usincometaxes.Rmd | 522 usincometaxes-0.7.0/usincometaxes/inst/doc/using-usincometaxes.html | 3071 +-- usincometaxes-0.7.0/usincometaxes/inst/doc/wasm.R | 26 usincometaxes-0.7.0/usincometaxes/inst/doc/wasm.Rmd | 62 usincometaxes-0.7.0/usincometaxes/inst/doc/wasm.html | 576 usincometaxes-0.7.0/usincometaxes/inst/taxsim/taxsim.js | 9016 +++++----- usincometaxes-0.7.0/usincometaxes/inst/taxsim/taxsim.wasm |binary usincometaxes-0.7.0/usincometaxes/man/calculate_taxes_wasm.Rd | 30 usincometaxes-0.7.0/usincometaxes/man/check_data.Rd | 44 usincometaxes-0.7.0/usincometaxes/man/check_filing_status.Rd | 30 usincometaxes-0.7.0/usincometaxes/man/check_greater_zero.Rd | 34 usincometaxes-0.7.0/usincometaxes/man/check_numeric.Rd | 34 usincometaxes-0.7.0/usincometaxes/man/check_parameters.Rd | 26 usincometaxes-0.7.0/usincometaxes/man/check_required_cols.Rd | 30 usincometaxes-0.7.0/usincometaxes/man/check_spouse.Rd | 34 usincometaxes-0.7.0/usincometaxes/man/check_state.Rd | 38 usincometaxes-0.7.0/usincometaxes/man/check_taxsimid.Rd | 30 usincometaxes-0.7.0/usincometaxes/man/clean_from_taxsim.Rd | 40 usincometaxes-0.7.0/usincometaxes/man/convert_marginal_tax_rates.Rd | 32 usincometaxes-0.7.0/usincometaxes/man/convert_na.Rd | 24 usincometaxes-0.7.0/usincometaxes/man/create_dataset_for_taxsim.Rd | 82 usincometaxes-0.7.0/usincometaxes/man/from_taxsim_cols.Rd | 24 usincometaxes-0.7.0/usincometaxes/man/get_state_soi.Rd | 38 usincometaxes-0.7.0/usincometaxes/man/taxpayer_finances.Rd | 44 usincometaxes-0.7.0/usincometaxes/man/taxsim_calculate_taxes.Rd | 186 usincometaxes-0.7.0/usincometaxes/man/taxsim_cols.Rd | 24 usincometaxes-0.7.0/usincometaxes/man/usincometaxes-package.Rd |only usincometaxes-0.7.0/usincometaxes/tests/testthat.R | 8 usincometaxes-0.7.0/usincometaxes/tests/testthat/test-calculate_taxes.R | 2 usincometaxes-0.7.0/usincometaxes/tests/testthat/test-check_data.R | 106 usincometaxes-0.7.0/usincometaxes/vignettes/send-data-to-taxsim.Rmd | 86 usincometaxes-0.7.0/usincometaxes/vignettes/taxsim-input.Rmd | 282 usincometaxes-0.7.0/usincometaxes/vignettes/taxsim-output.Rmd | 186 usincometaxes-0.7.0/usincometaxes/vignettes/using-usincometaxes.Rmd | 522 usincometaxes-0.7.0/usincometaxes/vignettes/wasm.Rmd | 62 60 files changed, 10627 insertions(+), 10605 deletions(-)
Title: Projection Pursuit
Description: Projection pursuit (PP) with 17 methods and grand tour with 3 methods. Being that projection pursuit searches for low-dimensional linear projections in high-dimensional data structures, while grand tour is a technique used to explore multivariate statistical data through animation.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between Pursuit versions 1.0.3 dated 2022-10-18 and 1.0.4 dated 2023-08-19
Pursuit-1.0.3/Pursuit/inst |only Pursuit-1.0.4/Pursuit/DESCRIPTION | 30 ++-- Pursuit-1.0.4/Pursuit/MD5 | 17 +- Pursuit-1.0.4/Pursuit/NAMESPACE | 11 - Pursuit-1.0.4/Pursuit/R/GrandTour_English.R | 193 ++++++++------------------ Pursuit-1.0.4/Pursuit/R/Plot.PP_English.R | 17 +- Pursuit-1.0.4/Pursuit/man/LocLab_English.Rd | 1 Pursuit-1.0.4/Pursuit/man/PP_Index_English.Rd | 3 Pursuit-1.0.4/Pursuit/man/Plot.PP_English.Rd | 3 Pursuit-1.0.4/Pursuit/man/Pursuit-package.Rd | 8 - 10 files changed, 108 insertions(+), 175 deletions(-)
Title: Multidimensional Cluster Generation Using Support Lines
Description: An implementation of the clugen algorithm for generating
multidimensional clusters with arbitrary distributions. Each cluster is
supported by a line segment, the position, orientation and length of which
guide where the respective points are placed. This package is described in
Fachada & de Andrade (2023) <doi:10.1016/j.knosys.2023.110836>.
Author: Nuno Fachada [aut, cre, cph]
Maintainer: Nuno Fachada <faken@fakenmc.com>
Diff between clugenr versions 1.0.0 dated 2023-08-07 and 1.0.1 dated 2023-08-19
clugenr-1.0.0/clugenr/R/clugenr.R |only clugenr-1.0.0/clugenr/man/clugenr.Rd |only clugenr-1.0.1/clugenr/DESCRIPTION | 6 clugenr-1.0.1/clugenr/MD5 | 58 ++--- clugenr-1.0.1/clugenr/R/clugenr-package.R |only clugenr-1.0.1/clugenr/R/helper.R | 4 clugenr-1.0.1/clugenr/R/main.R | 12 - clugenr-1.0.1/clugenr/R/module.R | 62 ++--- clugenr-1.0.1/clugenr/build/clugenr.pdf |binary clugenr-1.0.1/clugenr/build/stage23.rdb |binary clugenr-1.0.1/clugenr/inst/doc/examples2d.R | 8 clugenr-1.0.1/clugenr/inst/doc/examples2d.Rmd | 8 clugenr-1.0.1/clugenr/inst/doc/examples2d.html | 8 clugenr-1.0.1/clugenr/inst/doc/examples3d1.html | 107 ++++++--- clugenr-1.0.1/clugenr/inst/doc/examples3d2.R | 4 clugenr-1.0.1/clugenr/inst/doc/examples3d2.Rmd | 4 clugenr-1.0.1/clugenr/inst/doc/examples3d2.html | 111 ++++++---- clugenr-1.0.1/clugenr/inst/doc/examplesmrg.R | 2 clugenr-1.0.1/clugenr/inst/doc/examplesmrg.Rmd | 2 clugenr-1.0.1/clugenr/inst/doc/examplesmrg.html | 2 clugenr-1.0.1/clugenr/man/clugenr-package.Rd |only clugenr-1.0.1/clugenr/tests/testthat/test_clugen.R | 51 ++-- clugenr-1.0.1/clugenr/tests/testthat/test_clumerge.R | 4 clugenr-1.0.1/clugenr/tests/testthat/test_clupoints_n.R | 5 clugenr-1.0.1/clugenr/tests/testthat/test_clupoints_n_1.R | 5 clugenr-1.0.1/clugenr/tests/testthat/test_clupoints_n_1_template.R | 8 clugenr-1.0.1/clugenr/vignettes/examples2d.Rmd | 8 clugenr-1.0.1/clugenr/vignettes/examples3d2.Rmd | 4 clugenr-1.0.1/clugenr/vignettes/examplesmrg.Rmd | 2 clugenr-1.0.1/clugenr/vignettes/plot_examples_1d.R | 48 ++-- clugenr-1.0.1/clugenr/vignettes/plot_examples_2d.R | 60 ++--- clugenr-1.0.1/clugenr/vignettes/plot_examples_nd.R | 6 32 files changed, 330 insertions(+), 269 deletions(-)
Title: A Statistically Sound 'data.frame' Processor/Conditioner
Description: A 'data.frame' processor/conditioner that prepares real-world data for predictive modeling in a statistically sound manner.
'vtreat' prepares variables so that data has fewer exceptional cases, making
it easier to safely use models in production. Common problems 'vtreat' defends
against: 'Inf', 'NA', too many categorical levels, rare categorical levels, and new
categorical levels (levels seen during application, but not during training). Reference:
"'vtreat': a data.frame Processor for Predictive Modeling", Zumel, Mount, 2016, <DOI:10.5281/zenodo.1173313>.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between vtreat versions 1.6.3 dated 2021-06-11 and 1.6.4 dated 2023-08-19
vtreat-1.6.3/vtreat/man/vtreat.Rd |only vtreat-1.6.4/vtreat/DESCRIPTION | 14 vtreat-1.6.4/vtreat/MD5 | 40 vtreat-1.6.4/vtreat/NEWS.md | 4 vtreat-1.6.4/vtreat/R/mult_class.R | 2 vtreat-1.6.4/vtreat/R/vtreat.R | 4 vtreat-1.6.4/vtreat/build/vignette.rds |binary vtreat-1.6.4/vtreat/inst/doc/MultiClassVtreat.html | 445 ++++++--- vtreat-1.6.4/vtreat/inst/doc/SavingTreamentPlans.html | 451 ++++++--- vtreat-1.6.4/vtreat/inst/doc/VariableImportance.html | 470 +++++++-- vtreat-1.6.4/vtreat/inst/doc/vtreat.html | 874 ++++++++++++------ vtreat-1.6.4/vtreat/inst/doc/vtreatCrossFrames.html | 707 +++++++++----- vtreat-1.6.4/vtreat/inst/doc/vtreatGrouping.html | 420 ++++++-- vtreat-1.6.4/vtreat/inst/doc/vtreatOverfit.html | 662 +++++++++---- vtreat-1.6.4/vtreat/inst/doc/vtreatRareLevels.html | 494 +++++++--- vtreat-1.6.4/vtreat/inst/doc/vtreatScaleMode.html | 652 +++++++++---- vtreat-1.6.4/vtreat/inst/doc/vtreatSignificance.html | 513 +++++++--- vtreat-1.6.4/vtreat/inst/doc/vtreatSplitting.html | 616 +++++++++--- vtreat-1.6.4/vtreat/inst/doc/vtreatVariableTypes.html | 743 ++++++++++----- vtreat-1.6.4/vtreat/man/mkCrossFrameMExperiment.Rd | 1 vtreat-1.6.4/vtreat/man/rquery_prepare.Rd | 4 vtreat-1.6.4/vtreat/man/vtreat-package.Rd |only 22 files changed, 5174 insertions(+), 1942 deletions(-)
Title: Discovers Emoji from Text
Description: Unicodes are not friendly to work with, and not all Unicodes are
Emoji per se, making obtaining Emoji statistics a difficult task. This
tool can help your experience of working with Emoji as smooth as possible,
as it has the 'tidyverse' style.
Author: Youzhi Yu [aut, cre]
Maintainer: Youzhi Yu <yuyouzhi666@icloud.com>
Diff between tidyEmoji versions 0.1.0 dated 2022-02-18 and 0.1.1 dated 2023-08-19
tidyEmoji-0.1.0/tidyEmoji/vignettes/ata_tweets.csv |only tidyEmoji-0.1.1/tidyEmoji/DESCRIPTION | 19 tidyEmoji-0.1.1/tidyEmoji/MD5 | 32 tidyEmoji-0.1.1/tidyEmoji/NEWS.md | 10 tidyEmoji-0.1.1/tidyEmoji/R/data.R | 74 tidyEmoji-0.1.1/tidyEmoji/R/emoji-categorize.R | 110 - tidyEmoji-0.1.1/tidyEmoji/R/emoji-extraction.R | 154 +- tidyEmoji-0.1.1/tidyEmoji/R/emoji-summary.R | 174 +- tidyEmoji-0.1.1/tidyEmoji/R/tidyEmoji.R | 40 tidyEmoji-0.1.1/tidyEmoji/R/top-n-emojis.R | 134 - tidyEmoji-0.1.1/tidyEmoji/README.md | 354 ++-- tidyEmoji-0.1.1/tidyEmoji/build/vignette.rds |binary tidyEmoji-0.1.1/tidyEmoji/inst/doc/introduction.R | 210 +- tidyEmoji-0.1.1/tidyEmoji/inst/doc/introduction.Rmd | 401 ++--- tidyEmoji-0.1.1/tidyEmoji/inst/doc/introduction.html | 972 ++++++++----- tidyEmoji-0.1.1/tidyEmoji/tests/testthat/test-dimensions.R | 98 - tidyEmoji-0.1.1/tidyEmoji/vignettes/ata_tweets.rda |only tidyEmoji-0.1.1/tidyEmoji/vignettes/introduction.Rmd | 401 ++--- 18 files changed, 1728 insertions(+), 1455 deletions(-)
Title: Regression Spline Functions and Classes
Description: Constructs basis functions of B-splines, M-splines,
I-splines, convex splines (C-splines), periodic splines,
natural cubic splines, generalized Bernstein polynomials,
their derivatives, and integrals (except C-splines)
by closed-form recursive formulas.
It also contains a C++ head-only library integrated with Rcpp.
See Wang and Yan (2021) <doi:10.6339/21-JDS1020> for details.
Author: Wenjie Wang [aut, cre] ,
Jun Yan [aut]
Maintainer: Wenjie Wang <wang@wwenjie.org>
Diff between splines2 versions 0.5.0 dated 2023-06-11 and 0.5.1 dated 2023-08-19
DESCRIPTION | 14 +++++++------- MD5 | 26 +++++++++++++------------- NEWS.md | 13 ++++++++++--- R/naturalSpline.R | 4 ++-- R/splines2-package.R | 1 + README.md | 40 +++++++++++++++++++++------------------- build/vignette.rds |binary inst/CITATION | 2 +- inst/doc/splines2-intro.html | 6 +++--- inst/doc/splines2-wi-rcpp.html | 4 ++-- inst/examples/ex-bSpline.R | 35 ++++++++++++++++------------------- man/bSpline.Rd | 35 ++++++++++++++++------------------- man/naturalSpline.Rd | 4 ++-- man/splines2.Rd | 1 + 14 files changed, 95 insertions(+), 90 deletions(-)
Title: Datasets for Introduction to Statistical Data Analysis for the
Life Sciences
Description: Provides datasets for the book "Introduction to Statistical Data Analysis for the Life Sciences, Second edition" by Ekstrøm and Sørensen (2014).
Author: Claus Thorn Ekstroem <ekstrom@sund.ku.dk> and Helle Soerensen <helle@math.ku.dk>
Maintainer: Claus Ekstrom <ekstrom@sund.ku.dk>
Diff between isdals versions 3.0.0 dated 2022-04-22 and 3.0.1 dated 2023-08-19
isdals-3.0.0/isdals/man/isdals-package.Rd |only isdals-3.0.1/isdals/DESCRIPTION | 12 +++--- isdals-3.0.1/isdals/MD5 | 15 +++----- isdals-3.0.1/isdals/NAMESPACE | 17 +++++++-- isdals-3.0.1/isdals/R/logit.R | 12 ++++++ isdals-3.0.1/isdals/R/residualplot.R | 36 +++++++++++++++++++ isdals-3.0.1/isdals/man/logit.Rd | 32 ++++++----------- isdals-3.0.1/isdals/man/pine.Rd | 2 - isdals-3.0.1/isdals/man/residualplot.Rd | 55 +++++++++++++----------------- 9 files changed, 111 insertions(+), 70 deletions(-)
Title: Performs Fractal Analysis and Fractal Regression
Description: Various functions for performing fractal and multifractal analysis including performing fractal regression. Please refer to Peng and colleagues (1994) <doi:10.1103/physreve.49.1685>, Kantelhardt and colleagues (2002)<doi:10.1016/S0378-4371(02)01383-3>, and Likens and colleagues (2019) <doi:10.1016/j.physa.2019.121580>.
Author: Aaron Likens [aut, cre] ,
Travis Wiltshire [aut]
Maintainer: Aaron Likens <alikens@unomaha.edu>
Diff between fractalRegression versions 1.1 dated 2023-04-27 and 1.2 dated 2023-08-19
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/mra.cpp | 18 ++++++++++++------ 3 files changed, 18 insertions(+), 12 deletions(-)
More information about fractalRegression at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-02-15 0.14.1-0
2021-03-01 0.13.2-0
2019-06-22 0.11.1-0
2019-04-18 0.11.0-0
2019-03-18 0.10.1-0
2018-12-12 0.9.0-0
2018-10-19 0.8.1-0
2018-05-27 0.6.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-31 1.0.0
Title: Using Needleman-Wunsch to Match Sample Names
Description: The Needleman-Wunsch global alignment algorithm can be
used to find approximate matches between sample names in different
data sets. See Wang et al. (2010) <doi:10.4137/CIN.S5613>.
Author: Kevin R. Coombes
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between NameNeedle versions 1.2.6 dated 2020-03-23 and 1.2.7 dated 2023-08-19
NameNeedle-1.2.6/NameNeedle/man/NameNeedle-package.Rd |only NameNeedle-1.2.7/NameNeedle/DESCRIPTION | 8 ++++---- NameNeedle-1.2.7/NameNeedle/MD5 | 11 +++++------ NameNeedle-1.2.7/NameNeedle/build/vignette.rds |binary NameNeedle-1.2.7/NameNeedle/data/cellLineNames.RData |binary NameNeedle-1.2.7/NameNeedle/inst/doc/blastName.pdf |binary NameNeedle-1.2.7/NameNeedle/man/needles.Rd | 13 ++++++++++--- 7 files changed, 19 insertions(+), 13 deletions(-)
Title: Linear Mixed Models
Description: It implements Expectation/Conditional Maximization Either (ECME)
and rapidly converging algorithms as well as
Bayesian inference for linear mixed models,
which is described in Schafer, J.L. (1998)
"Some improved procedures for linear mixed models".
Dept. of Statistics, The Pennsylvania State University.
Author: Original by Joseph L. Schafer
Maintainer: Jing hua Zhao <jinghuazhao@hotmail.com>
Diff between lmm versions 1.3 dated 2020-07-06 and 1.4 dated 2023-08-19
ChangeLog | 4 + DESCRIPTION | 8 +- MD5 | 10 +-- build/vignette.rds |binary inst/doc/lmm-tr.pdf |binary src/lmm.f | 156 ++++++++++++++++++++++++++-------------------------- 6 files changed, 91 insertions(+), 87 deletions(-)
Title: Full Featured Implementation of Hash Tables/Associative
Arrays/Dictionaries
Description: Implements a data structure similar to hashes in Perl and dictionaries in Python but with a purposefully R flavor. For objects of appreciable size, access using hashes outperforms native named lists and vectors.
Author: Christopher Brown [aut],
John Hughes [cre, ctb]
Maintainer: John Hughes <drjphughesjr@gmail.com>
Diff between hash versions 2.2.6.2 dated 2022-03-22 and 2.2.6.3 dated 2023-08-19
DESCRIPTION | 15 +++++++++------ MD5 | 10 +++++----- R/class-hash.R | 2 +- man/hash-accessors.Rd | 4 ++-- man/hash-class.Rd | 8 ++++---- man/hash-package.Rd | 16 +--------------- 6 files changed, 22 insertions(+), 33 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-10 0.1.1
2022-02-28 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-20 1.1.0
2020-03-25 1.0.6
2020-01-31 1.0.5
2020-01-27 1.0.4
2020-01-19 1.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-16 0.1.1
2022-03-03 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-19 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-17 1.7
2015-07-06 1.6
2010-03-11 1.5
2010-03-02 1.4
2009-11-22 1.3
2009-09-04 1.2
2009-08-19 1.1
2009-08-14 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-03-02 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-01 0.1.2
2022-06-09 0.1.1
2022-03-08 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-08 0.2.1
2022-02-25 0.2.0
2021-11-02 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-08 0.1.1
2022-03-11 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-07 0.1.1
2022-06-16 0.1.0
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2021-11-02 2021.1.0
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2020-07-05 1.0.8
2019-03-22 1.0.7
2018-01-30 1.0.6
2015-12-31 1.0.4
2015-11-05 1.0.3
2015-08-31 1.0.2
2015-07-07 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-08-13 0.1.0
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2020-07-25 0.7.0
2019-02-26 0.6.0
2016-09-02 0.5.0
2014-11-24 0.3
2014-09-09 0.2
2014-05-01 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-24 2.1.6
2021-03-03 2.1.5
2020-01-23 2.1.4
2019-07-19 2.1.3
2019-02-01 2.1.2
2018-11-14 2.1.1
2018-07-06 2.1.0
2018-06-12 2.0.0
2017-10-10 1.2.0
2017-09-05 1.1.0
2017-08-30 1.0.0
2017-07-26 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-05 1.0.1
2020-08-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-16 0.4.0
2020-06-04 0.3.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-25 0.9.1
2019-06-19 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-08 0.2.1
2021-03-30 0.2.0
2021-03-03 0.1.3
2021-01-18 0.1.2
2021-01-13 0.1.1
2021-01-09 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-07 0.1.0
Title: Wrap R Tools for Debugging and Parametric Programming
Description: Tools for writing and debugging R code. Provides:
'%.>%' dot-pipe (an 'S3' configurable pipe), unpack/to (R style multiple assignment/return),
'build_frame()'/'draw_frame()' ('data.frame' example tools),
'qc()' (quoting concatenate),
':=' (named map builder), 'let()' (converts non-standard evaluation interfaces to parametric standard
evaluation interfaces, inspired by 'gtools::strmacro()' and 'base::bquote()'), and more.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between wrapr versions 2.0.9 dated 2022-01-26 and 2.1.0 dated 2023-08-19
wrapr-2.0.9/wrapr/man/wrapr.Rd |only wrapr-2.1.0/wrapr/DESCRIPTION | 10 wrapr-2.1.0/wrapr/MD5 | 58 - wrapr-2.1.0/wrapr/NEWS.md | 5 wrapr-2.1.0/wrapr/R/package.R | 5 wrapr-2.1.0/wrapr/R/unpack.R | 2 wrapr-2.1.0/wrapr/README.md | 100 - wrapr-2.1.0/wrapr/build/vignette.rds |binary wrapr-2.1.0/wrapr/inst/doc/CornerCases.html | 441 ++++++-- wrapr-2.1.0/wrapr/inst/doc/DebugFnW.html | 490 ++++++--- wrapr-2.1.0/wrapr/inst/doc/FrameTools.html | 463 ++++++-- wrapr-2.1.0/wrapr/inst/doc/Named_Arguments.Rmd | 2 wrapr-2.1.0/wrapr/inst/doc/Named_Arguments.html | 409 +++++-- wrapr-2.1.0/wrapr/inst/doc/QuotingConcatinate.html | 424 ++++++-- wrapr-2.1.0/wrapr/inst/doc/SubstitutionModes.html | 457 ++++++-- wrapr-2.1.0/wrapr/inst/doc/bquote.html | 476 ++++++--- wrapr-2.1.0/wrapr/inst/doc/dot_pipe.html | 387 +++++-- wrapr-2.1.0/wrapr/inst/doc/lambda.html | 369 +++++-- wrapr-2.1.0/wrapr/inst/doc/let.html | 443 ++++++-- wrapr-2.1.0/wrapr/inst/doc/multi_assign.html | 685 +++++++++---- wrapr-2.1.0/wrapr/inst/doc/named_map_builder.html | 369 +++++-- wrapr-2.1.0/wrapr/inst/doc/unpack_multiple_assignment.html | 515 +++++++-- wrapr-2.1.0/wrapr/inst/doc/wrapr_Eager.html | 413 ++++++- wrapr-2.1.0/wrapr/inst/doc/wrapr_applicable.html | 566 +++++++--- wrapr-2.1.0/wrapr/man/coalesce.Rd | 4 wrapr-2.1.0/wrapr/man/dot_arrow.Rd | 8 wrapr-2.1.0/wrapr/man/grab_assignments_from_dots.Rd | 4 wrapr-2.1.0/wrapr/man/reduceexpand.Rd | 6 wrapr-2.1.0/wrapr/man/wrapr-package.Rd |only wrapr-2.1.0/wrapr/tools/README-unnamed-chunk-3-1.png |binary wrapr-2.1.0/wrapr/vignettes/Named_Arguments.Rmd | 2 31 files changed, 5269 insertions(+), 1844 deletions(-)
Title: Weighted Correlations
Description: Calculates Pearson, Spearman, polychoric, and polyserial correlation coefficients, in weighted or unweighted form. The package implements tetrachoric correlation as a special case of the polychoric and biserial correlation as a specific case of the polyserial.
Author: Emmanuel Sikali [pdr],
Paul Bailey [aut, cre],
Ahmad Emad [aut],
Eric Buehler [ctb]
Maintainer: Paul Bailey <pbailey@air.org>
Diff between wCorr versions 1.9.6 dated 2023-02-08 and 1.9.8 dated 2023-08-19
DESCRIPTION | 12 ++--- MD5 | 48 +++++++++++----------- NAMESPACE | 25 ++++++----- R/contCorrFast.R | 2 R/polycFast.R | 14 ------ R/polycSlow.R | 20 +-------- R/polys.mcmc.R | 17 ------- R/polysFast.R | 2 R/sim.R | 6 -- R/wCorrSim.R | 4 - R/wrank.R | 2 build/vignette.rds |binary inst/NEWS.rd | 11 ++++- inst/doc/wCorrArguments.R | 78 ++++++++++++++++++++++++------------ inst/doc/wCorrArguments.Rmd | 78 ++++++++++++++++++++++++------------ inst/doc/wCorrArguments.pdf |binary inst/doc/wCorrFormulas.R | 83 ++++++++++++++++++++++++-------------- inst/doc/wCorrFormulas.Rmd | 93 ++++++++++++++++++++++++++++--------------- inst/doc/wCorrFormulas.pdf |binary src/Makevars | 1 src/helpers.cpp | 1 src/polycHelpers.cpp | 13 ------ src/rcpparma_hello_world.cpp | 2 vignettes/wCorrArguments.Rmd | 78 ++++++++++++++++++++++++------------ vignettes/wCorrFormulas.Rmd | 93 ++++++++++++++++++++++++++++--------------- 25 files changed, 399 insertions(+), 284 deletions(-)
Title: Dynamic Models for Survival Data
Description: Time-varying coefficient models for interval censored and
right censored survival data including
1) Bayesian Cox model with time-independent, time-varying or
dynamic coefficients for right censored and interval censored data studied by
Sinha et al. (1999) <doi:10.1111/j.0006-341X.1999.00585.x> and
Wang et al. (2013) <doi:10.1007/s10985-013-9246-8>,
2) Spline based time-varying coefficient Cox model for right censored data
proposed by Perperoglou et al. (2006) <doi:10.1016/j.cmpb.2005.11.006>, and
3) Transformation model with time-varying coefficients for right censored data
using estimating equations proposed by
Peng and Huang (2007) <doi:10.1093/biomet/asm058>.
Author: Wenjie Wang [aut, cre] ,
Ming-Hui Chen [aut],
Xiaojing Wang [aut],
Jun Yan [aut]
Maintainer: Wenjie Wang <wang@wwenjie.org>
Diff between dynsurv versions 0.4-4 dated 2023-04-29 and 0.4-5 dated 2023-08-19
ChangeLog | 6 ++++++ DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/dynsurv-package.R | 1 + inst/CITATION | 2 +- man/dynsurv.Rd | 1 + 6 files changed, 17 insertions(+), 9 deletions(-)
Title: Optimal, Fast, and Reproducible Univariate Clustering
Description: Fast, optimal, and reproducible weighted univariate
clustering by dynamic programming. Four problems are solved, including
univariate k-means (Wang & Song 2011) <doi:10.32614/RJ-2011-015>
(Song & Zhong 2020) <doi:10.1093/bioinformatics/btaa613>, k-median,
k-segments, and multi-channel weighted k-means. Dynamic programming
is used to minimize the sum of (weighted) within-cluster distances
using respective metrics. Its advantage over heuristic clustering in
efficiency and accuracy is pronounced when there are many clusters.
Multi-channel weighted k-means groups multiple univariate
signals into k clusters. An auxiliary function generates histograms
adaptive to patterns in data. This package provides a powerful set
of tools for univariate data analysis with guaranteed optimality,
efficiency, and reproducibility, useful for peak calling on temporal,
spatial, and spectral data.
Author: Joe Song [aut, cre] ,
Hua Zhong [aut] ,
Haizhou Wang [aut]
Maintainer: Joe Song <joemsong@cs.nmsu.edu>
Diff between Ckmeans.1d.dp versions 4.3.4 dated 2022-01-30 and 4.3.5 dated 2023-08-19
Ckmeans.1d.dp-4.3.4/Ckmeans.1d.dp/src/Makevars |only Ckmeans.1d.dp-4.3.4/Ckmeans.1d.dp/src/Makevars.win |only Ckmeans.1d.dp-4.3.5/Ckmeans.1d.dp/DESCRIPTION | 10 Ckmeans.1d.dp-4.3.5/Ckmeans.1d.dp/MD5 | 36 Ckmeans.1d.dp-4.3.5/Ckmeans.1d.dp/NAMESPACE | 9 Ckmeans.1d.dp-4.3.5/Ckmeans.1d.dp/NEWS.md | 62 + Ckmeans.1d.dp-4.3.5/Ckmeans.1d.dp/R/MultiChannel.WUC.R | 45 Ckmeans.1d.dp-4.3.5/Ckmeans.1d.dp/R/ahist.R | 2 Ckmeans.1d.dp-4.3.5/Ckmeans.1d.dp/build/partial.rdb |binary Ckmeans.1d.dp-4.3.5/Ckmeans.1d.dp/build/vignette.rds |binary Ckmeans.1d.dp-4.3.5/Ckmeans.1d.dp/inst/doc/Ckmeans.1d.dp.html | 487 +++++++--- Ckmeans.1d.dp-4.3.5/Ckmeans.1d.dp/inst/doc/Weights.html | 253 ++++- Ckmeans.1d.dp-4.3.5/Ckmeans.1d.dp/inst/doc/ahist.html | 449 ++++++--- Ckmeans.1d.dp-4.3.5/Ckmeans.1d.dp/man/Ckmeans.1d.dp-package.Rd | 8 Ckmeans.1d.dp-4.3.5/Ckmeans.1d.dp/man/MultiChannel.WUC.Rd | 28 Ckmeans.1d.dp-4.3.5/Ckmeans.1d.dp/man/plot.MCW.Rd |only Ckmeans.1d.dp-4.3.5/Ckmeans.1d.dp/src/Ckmeans.1d.dp.cpp | 2 Ckmeans.1d.dp-4.3.5/Ckmeans.1d.dp/src/MCW_functions.cpp | 468 ++++++--- Ckmeans.1d.dp-4.3.5/Ckmeans.1d.dp/src/weighted_select_levels.cpp | 16 Ckmeans.1d.dp-4.3.5/Ckmeans.1d.dp/tests/testthat/Rplots.pdf |only Ckmeans.1d.dp-4.3.5/Ckmeans.1d.dp/tests/testthat/test_MC_WUC.R | 64 + 21 files changed, 1474 insertions(+), 465 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-03 1.3.1
2015-01-12 1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-13 1.0.1
2016-09-15 1.0
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2019-12-22 0.1.0
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2020-05-08 1.0.0
2020-02-12 0.2.1
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2020-08-26 0.1.0
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2019-03-22 1.0.9
2018-01-30 1.0.8
2016-08-21 1.0.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-02-20 3.0.0
2021-09-27 2.0.0
2021-01-25 1.0.0
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2020-10-14 1.3.1
2015-07-06 1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-26 1.3-1
2013-07-28 1.3
2013-07-20 1.2
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2019-11-06 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-06 2.4
2013-10-14 2.3
2013-06-04 2.2
2012-11-27 2.0
2012-11-27 2.1
2010-08-31 1.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-23 1.0.1
2022-05-09 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-20 1.2.3
2020-10-29 1.2.2
2020-02-03 1.2.1
2019-12-05 1.1.0
2019-10-16 1.0.1
2019-10-09 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-16 0.8.1
2018-04-28 0.7.0
2017-10-01 0.6.1
2017-06-21 0.5.1
2017-06-19 0.5.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-11 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-11 1.0.4
2017-09-23 1.0.3
2016-03-31 1.0.2
2015-09-07 1.0.1
2015-04-15 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-21 0.2.1
2020-09-23 0.2.0
2020-04-01 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-19 2.1.0
2017-11-09 2.0.6
2017-08-03 2.0.5
2016-03-08 2.0.4
2016-01-12 2.0.3
2015-10-17 2.0.1
2015-07-24 2.0.0
2014-12-26 1.0.3
2014-11-25 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-28 1.0.0
2021-05-28 0.4.2
2020-10-20 0.4.1
2020-01-09 0.3.2
2019-11-25 0.3.0
2019-09-10 0.2.3
2019-07-02 0.2.2
2019-06-04 0.2.0
2019-04-01 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-28 0.1.0
Title: Convenience Functions for Psychology
Description: Make your workflow faster and easier. Easily customizable
plots (via 'ggplot2'), nice APA tables (following the style of the
*American Psychological Association*) exportable to Word (via
'flextable'), easily run statistical tests or check assumptions, and
automatize various other tasks.
Author: Remi Theriault [aut, cre]
Maintainer: Remi Theriault <remi.theriault@mail.mcgill.ca>
Diff between rempsyc versions 0.1.4 dated 2023-07-20 and 0.1.5 dated 2023-08-19
DESCRIPTION | 10 MD5 | 88 - NEWS.md | 20 R/cormatrix_excel.R | 876 ++++++------- R/nice_lm.R | 278 ++-- R/nice_lm_slopes.R | 362 ++--- R/nice_mod.R | 286 ++-- R/nice_slopes.R | 430 +++--- R/nice_t_test.R | 364 ++--- R/nice_table.R | 1785 ++++++++++++++-------------- R/utils.R | 166 +- R/zzz.R | 17 README.md | 31 inst/CITATION | 23 inst/WORDLIST | 41 inst/doc/assumptions.html | 10 inst/doc/contrasts.html | 4 inst/doc/moderation.html | 20 inst/doc/t-test.html | 18 inst/doc/table.html | 48 man/figures/README-nice_contrasts-1.png |binary man/get_dep_version.Rd | 2 man/nice_lm.Rd | 2 man/nice_lm_slopes.Rd | 4 man/nice_mod.Rd | 4 man/nice_slopes.Rd | 4 tests/testthat/_snaps/best_duplicate.md | 24 tests/testthat/_snaps/cormatrix_excel.md | 132 +- tests/testthat/_snaps/extract_duplicates.md | 22 tests/testthat/_snaps/find_mad.md | 260 ++-- tests/testthat/_snaps/format_value.md | 126 - tests/testthat/_snaps/nice_assumptions.md | 30 tests/testthat/_snaps/nice_lm.md | 80 - tests/testthat/_snaps/nice_lm_slopes.md | 68 - tests/testthat/_snaps/nice_mod.md | 166 +- tests/testthat/_snaps/nice_na.md | 76 - tests/testthat/_snaps/nice_randomize.md | 334 ++--- tests/testthat/_snaps/nice_reverse.md | 56 tests/testthat/_snaps/nice_slopes.md | 154 +- tests/testthat/_snaps/nice_t_test.md | 180 +- tests/testthat/_snaps/nice_table.md | 276 ++-- tests/testthat/_snaps/nice_var.md | 52 tests/testthat/_snaps/scale_mad.md | 24 tests/testthat/_snaps/winsorize_mad.md | 20 tests/testthat/test-overlap_circle.R | 93 - 45 files changed, 3560 insertions(+), 3506 deletions(-)
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2022-05-02 0.1.0
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2018-03-09 1.2
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2020-03-26 1.2
2019-08-27 1.1
2015-08-25 0.7
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2020-11-14 2.0.1
2020-01-23 2.0.0
2019-08-22 1.0.3
2019-08-22 1.0.4
2019-02-11 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-20 1.3
2016-07-17 1.2
2015-06-10 1.1
2014-02-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-30 1.1.0
2019-11-05 1.0.0
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2019-09-26 2.4.3
2019-05-16 2.4.2
2019-02-25 2.4.1
2019-02-07 2.4
2018-12-07 2.3.1
2018-11-15 2.3
2018-09-24 2.2.2
2018-09-15 2.2.1
2018-08-04 2.2.0
2018-04-26 2.1.1
2018-02-12 2.1.0
2018-01-30 2.0.1
2018-01-18 2.0
2015-10-03 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-27 3.0.1
2021-03-15 3.0
2020-11-12 2.0.0
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2017-04-21 1.1
2017-03-21 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-28 3.0
2016-03-06 2.1
2014-11-01 2.0
2013-05-01 1.0
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2021-01-21 1.0.1
2020-07-01 1.0.0
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2020-08-18 1.0.0
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2020-01-10 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-09 1.2.1
2021-12-21 1.2.0
2021-03-14 1.1.0
2020-11-09 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-20 1.0-2
2013-10-28 1.0-1
2013-10-15 1.0
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2019-07-31 2.3
2018-05-01 2.2
2017-11-23 2.1
2016-11-28 2.0
2015-05-14 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-10 0.3.1
2018-09-17 0.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-15 1.0-1
2018-10-30 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-09-24 1.0-1
2018-04-30 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-14 0.1.1
2015-12-12 0.1
Title: Seismic Reflection and Scattering Coefficients
Description: Calculate and plot scattering matrix coefficients for plane waves at interface.
Author: Jonathan M. Lees [aut, cre]
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between zoeppritz versions 1.0-8 dated 2020-11-05 and 1.0-9 dated 2023-08-19
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/zoeppritz-package.Rd | 9 --------- 3 files changed, 6 insertions(+), 15 deletions(-)
Title: Shape Selection for Landsat Time Series of Forest Dynamics
Description: Landsat satellites collect important data about global forest conditions. Documentation about Landsat's role in forest disturbance estimation is available at the site <https://landsat.gsfc.nasa.gov/>. By constrained quadratic B-splines, this package delivers an optimal shape-restricted trajectory to a time series of Landsat imagery for the purpose of modeling annual forest disturbance dynamics to behave in an ecologically sensible manner assuming one of seven possible "shapes", namely, flat, decreasing, one-jump (decreasing, jump up, decreasing), inverted vee (increasing then decreasing), vee (decreasing then increasing), linear increasing, and double-jump (decreasing, jump up, decreasing, jump up, decreasing). The main routine selects the best shape according to the minimum Bayes information criterion (BIC) or the cone information criterion (CIC), which is defined as the log of the estimated predictive squared error. The package also provides parameters summarizing the temporal [...truncated...]
Author: Xiyue Liao [aut, cre] ,
Mary Meyer [aut],
Elizabeth Freeman [aut],
Gretchen Moisen [aut]
Maintainer: Xiyue Liao <xliao@sdsu.edu>
Diff between ShapeSelectForest versions 1.6 dated 2023-08-08 and 1.7 dated 2023-08-19
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/ShapeSelectForest-package.Rd | 11 ----------- 3 files changed, 6 insertions(+), 17 deletions(-)
More information about ShapeSelectForest at CRAN
Permanent link
Title: Czekanowski's Diagrams
Description: Allows for production of Czekanowski's Diagrams. See K. Bartoszek, A. Vasterlund (2020) <doi:10.2478/bile-2020-0008>.
Author: Albin Vasterlund [aut],
Krzysztof Bartoszek [cre, aut, ths],
Ying Luo [aut],
Piotr Jaskulski [ctb]
Maintainer: Krzysztof Bartoszek <krzbar@protonmail.ch>
Diff between RMaCzek versions 1.5.0 dated 2022-09-30 and 1.5.1 dated 2023-08-19
DESCRIPTION | 11 ++++------ MD5 | 8 +++---- R/RMaCzek.R | 1 inst/CITATION | 61 +++++++++++++++++++++++++++++++++++++++++---------------- man/RMaCzek.Rd | 1 5 files changed, 55 insertions(+), 27 deletions(-)
Title: A Modification of Fleiss' Kappa in Case of Nominal and Ordinal
Variables
Description: The kappa statistic implemented by Fleiss is a very popular index for assessing the reliability of agreement among multiple observers. It is used both in the psychological and in the psychiatric field. Other fields of application are typically medicine, biology and engineering. Unfortunately,the kappa statistic may behave inconsistently in case of strong agreement between raters, since this index assumes lower values than it would have been expected. We propose a modification kappa implemented by Fleiss in case of nominal and ordinal variables. Monte Carlo simulations are used both to testing statistical hypotheses and to calculating percentile bootstrap confidence intervals based on proposed statistic in case of nominal and ordinal data.
Author: Daniele Giardiello [cre],
Piero Quatto [aut],
Enrico Ripamonti [aut],
Stefano Vigliani [ctb]
Maintainer: Daniele Giardiello <daniele.giardiello1@gmail.com>
Diff between raters versions 2.0.2 dated 2022-05-10 and 2.0.3 dated 2023-08-19
DESCRIPTION | 9 +++++---- MD5 | 4 ++-- man/raters-package.Rd | 3 +-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Create a Random List for Crossover Studies
Description: Contains a function to randomize subjects, patients in groups of
sequences (treatment sequences).
If a blocksize is given, the randomization will be done within blocks.
The randomization may be controlled by a Wald-Wolfowitz runs test.
Functions to obtain the p-value of that test are included.
The package is mainly intended for randomization of bioequivalence studies
but may be used also for other clinical crossover studies.
Contains two helper functions sequences() and williams() to get the sequences
of commonly used designs in BE studies.
Author: D. Labes
Maintainer: D. Labes <detlewlabes@gmx.de>
Diff between randomizeBE versions 0.3-5 dated 2019-08-24 and 0.3-6 dated 2023-08-19
randomizeBE-0.3-5/randomizeBE/NEWS |only randomizeBE-0.3-5/randomizeBE/man/randomizeBE-package.Rd |only randomizeBE-0.3-6/randomizeBE/DESCRIPTION | 10 ++++++---- randomizeBE-0.3-6/randomizeBE/MD5 | 9 ++++----- randomizeBE-0.3-6/randomizeBE/NEWS.md |only randomizeBE-0.3-6/randomizeBE/man/RL4.Rd | 2 +- randomizeBE-0.3-6/randomizeBE/man/runs.pvalue.Rd | 2 +- 7 files changed, 12 insertions(+), 11 deletions(-)
Title: Add Custom Legends to 'leaflet' Maps
Description: Provides extensions to the 'leaflet' package to
customize legends with images, text styling, orientation, sizing,
and symbology and functions to create symbols to plot on maps.
Author: Thomas Roh [aut, cre],
Ricardo Rodrigo Basa [ctb]
Maintainer: Thomas Roh <thomas@roh.engineering>
Diff between leaflegend versions 1.1.0 dated 2023-05-04 and 1.1.1 dated 2023-08-19
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 6 ++++++ R/legend.R | 15 +++++++++------ man/availableShapes.Rd | 28 ++++++++++++++-------------- tests/testthat/test-legend.R | 2 +- 6 files changed, 39 insertions(+), 30 deletions(-)
Title: Data for Topographic and Geologic Mapping
Description: Data sets included here are for use with package GEOmap. These include world map, USA map, Coso map, Japan Map.
Author: Jonathan M. Lees [aut, cre]
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between geomapdata versions 2.0-0 dated 2022-05-03 and 2.0-2 dated 2023-08-19
DESCRIPTION | 8 ++++---- MD5 | 32 ++++++++++++++++---------------- data/USAmap.RData |binary data/cosogeol.RData |binary data/cosomap.RData |binary data/faults.RData |binary data/fujitopo.RData |binary data/hiways.RData |binary data/japmap.RData |binary data/kamaleutmap.RData |binary data/kammap.RData |binary data/meijimap.RData |binary data/owens.RData |binary data/usacity.RData |binary data/worldcity.RData |binary data/worldmap.RData |binary man/geomapdata-package.Rd | 8 +------- 17 files changed, 21 insertions(+), 27 deletions(-)
Title: Check Validity of FIGI, CUSIP, ISIN, SEDOL
Description: With the functions in this package you can check the
validity of the following financial instrument identifiers:
FIGI (Financial Instrument Global Identifier
<https://www.openfigi.com/about/figi>),
CUSIP (Committee on Uniform Security Identification Procedures
<https://www.cusip.com/identifiers.html#/CUSIP>),
ISIN (International Securities Identification Number
<https://www.cusip.com/identifiers.html#/ISIN>),
SEDOL (Stock Exchange Daily Official List
<https://www2.lseg.com/SEDOL-masterfile-service-tech-guide-v8.6>).
You can also calculate the FIGI checksum of 11-character strings,
which can be useful if you want to create your own FIGI identifiers.
Author: Panagiotis Cheilaris [aut, cre]
Maintainer: Panagiotis Cheilaris <philaris@gmail.com>
Diff between figir versions 0.1.6.8 dated 2022-11-28 and 0.1.7.0 dated 2023-08-19
figir-0.1.6.8/figir/R/figir.R |only figir-0.1.6.8/figir/man/figir.Rd |only figir-0.1.7.0/figir/DESCRIPTION | 8 ++++---- figir-0.1.7.0/figir/MD5 | 6 +++--- figir-0.1.7.0/figir/R/figir-package.R |only figir-0.1.7.0/figir/man/figir-package.Rd |only 6 files changed, 7 insertions(+), 7 deletions(-)
Title: Empirical Bayes Estimation and Inference
Description: Kiefer-Wolfowitz maximum likelihood estimation for mixture models
and some other density estimation and regression methods based on convex
optimization. See Koenker and Gu (2017) REBayes: An R Package for Empirical
Bayes Mixture Methods, Journal of Statistical Software, 82, 1--26,
<DOI:10.18637/jss.v082.i08>.
Author: Roger Koenker [aut, cre],
Jiaying Gu [ctb],
Ivan Mizera [ctb]
Maintainer: Roger Koenker <rkoenker@uiuc.edu>
Diff between REBayes versions 2.51 dated 2022-03-22 and 2.54 dated 2023-08-19
DESCRIPTION | 6 +++--- MD5 | 32 ++++++++++++++++---------------- NAMESPACE | 2 ++ R/Gompertzmix.R | 2 +- R/KWDual.R | 17 +++++++++++------ R/KWPrimal.R | 2 +- R/RLR.R | 2 +- R/TLmix.R | 5 +++-- R/Weibullmix.R | 40 ++++++++++++++++++++++++++++------------ R/medde.R | 4 +++- R/misc.R | 10 +++++----- build/vignette.rds |binary inst/ChangeLog | 30 +++++++++++++++++++++++++++++- inst/doc/Bdecon.pdf |binary inst/doc/medde.pdf |binary inst/doc/rebayes.pdf |binary man/Weibullmix.Rd | 4 ++++ 17 files changed, 107 insertions(+), 49 deletions(-)
Title: Permutation Testing Network Module Preservation Across Datasets
Description: Functions for assessing the replication/preservation of a network
module's topology across datasets through permutation testing; Ritchie et al.
(2015) <doi: 10.1016/j.cels.2016.06.012>.
Author: Scott Ritchie [aut, cre]
Maintainer: Scott Ritchie <sritchie73@gmail.com>
Diff between NetRep versions 1.2.6 dated 2023-01-06 and 1.2.7 dated 2023-08-19
ChangeLog | 12 DESCRIPTION | 11 MD5 | 38 R/NetRep.R | 3 R/RcppExports.R | 70 build/vignette.rds |binary inst/doc/NetRep.R | 590 - inst/doc/NetRep.html | 3508 ++++------ man/NetRep.Rd | 12 src/Makevars | 1 src/Makevars.win | 1 vignettes/NetRep_files/figure-html/correlation_heatmap-1.jpeg |binary vignettes/NetRep_files/figure-html/disk_matrix_dry_run-1.jpeg |binary vignettes/NetRep_files/figure-html/disk_matrix_plot-1.jpeg |binary vignettes/NetRep_files/figure-html/dry_run-1.jpeg |binary vignettes/NetRep_files/figure-html/dry_run_customised-1.jpeg |binary vignettes/NetRep_files/figure-html/mean_degree-1.jpeg |binary vignettes/NetRep_files/figure-html/mean_degree_customised-1.jpeg |binary vignettes/NetRep_files/figure-html/modules_in_discovery-1.jpeg |binary vignettes/NetRep_files/figure-html/modules_in_test-1.jpeg |binary 20 files changed, 2123 insertions(+), 2123 deletions(-)
Title: Analise multivariada (brazilian portuguese)
Description: Pacote para analise multivariada, tendo funcoes que executam analise de correspondencia simples (CA) e multipla (MCA), analise de componentes principais (PCA), analise de correlacao canonica (CCA), analise fatorial (FA), escalonamento multidimensional (MDS), analise discriminante linear (LDA) e quadratica (QDA), analise de cluster hierarquico e nao hierarquico, regressao linear simples e multipla, analise de multiplos fatores (MFA) para dados quantitativos, qualitativos, de frequencia (MFACT) e dados mistos, biplot, scatter plot, projection pursuit (PP), grant tour e outras funcoes uteis para a analise multivariada.
Author: Paulo Cesar Ossani <ossanipc@hotmail.com>
Marcelo Angelo Cirillo <macufla@des.ufla.br>
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar.pt versions 2.2.0 dated 2023-08-09 and 2.2.1 dated 2023-08-19
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/MFA.R | 14 +++++++------- man/MVar.pt-package.Rd | 6 +++--- 4 files changed, 17 insertions(+), 17 deletions(-)
Title: Multiple Factor Analysis (MFA)
Description: Performs Multiple Factor Analysis method for quantitative, categorical, frequency and mixed data, in addition to generating a lot of graphics, also has other useful functions.
Author: Paulo Cesar Ossani <ossanipc@hotmail.com>
Marcelo Angelo Cirillo <macufla@dex.ufla.br>
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MFAg versions 1.8 dated 2021-01-10 and 1.9 dated 2023-08-19
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/MFA_English.R | 18 +++++++++--------- man/MFAg-package.Rd | 6 +++--- 4 files changed, 19 insertions(+), 19 deletions(-)
Title: Continued Fraction Generators and Evaluators
Description: Converts numbers to continued fractions and back again. A solver for Pell's Equation is provided. The method for calculating roots in continued fraction form is provided without published attribution in such places as Professor Emeritus Jonathan Lubin, <http://www.math.brown.edu/jlubin/> and his post to StackOverflow, <https://math.stackexchange.com/questions/2215918> , or Professor Ron Knott, e.g., <https://r-knott.surrey.ac.uk/Fibonacci/cfINTRO.html> .
Author: Carl Witthoft
Maintainer: Carl Witthoft <cellocgw@gmail.com>
Diff between contFracR versions 1.2 dated 2022-12-03 and 1.2.1 dated 2023-08-19
ChangeLog | 3 ++- DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/cfrac.R | 8 +++++--- man/contFracR-package.Rd | 9 --------- 5 files changed, 15 insertions(+), 21 deletions(-)
Title: Joint Analysis of Experiments with Mixtures and Random Effects
Description: Performs a joint analysis of experiments with mixtures and random effects, taking on a process variable represented by a covariable.
Author: Marcelo Angelo Cirillo <macufla@gmail.com>
Paulo Cesar Ossani <ossanipc@hotmail.com>
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between Blendstat versions 1.0.3 dated 2020-03-24 and 1.0.4 dated 2023-08-19
Blendstat-1.0.3/Blendstat/inst |only Blendstat-1.0.4/Blendstat/DESCRIPTION | 8 ++++---- Blendstat-1.0.4/Blendstat/MD5 | 5 ++--- Blendstat-1.0.4/Blendstat/man/Blendstat-package.Rd | 8 ++++---- 4 files changed, 10 insertions(+), 11 deletions(-)
Title: Describe Pedigree Relationships in Words
Description: Describe in words the genealogical relationship between two
members of a given pedigree. 'verbalisr' is part of the 'ped suite'
collection of packages for pedigree analysis. For a demonstration of
'verbalisr', see the online app 'QuickPed' at
<https://magnusdv.shinyapps.io/quickped>.
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between verbalisr versions 0.5.0 dated 2023-02-10 and 0.5.1 dated 2023-08-19
verbalisr-0.5.0/verbalisr/man/verbalisr.Rd |only verbalisr-0.5.1/verbalisr/DESCRIPTION | 13 ++++++------- verbalisr-0.5.1/verbalisr/MD5 | 9 +++++---- verbalisr-0.5.1/verbalisr/NEWS.md | 9 +++++++++ verbalisr-0.5.1/verbalisr/R/verbalisr-package.R | 14 +++++--------- verbalisr-0.5.1/verbalisr/inst |only verbalisr-0.5.1/verbalisr/man/verbalisr-package.Rd |only 7 files changed, 25 insertions(+), 20 deletions(-)
Title: Tools for Simulation of Evapotranspiration of Field Crops and
Soil Water Balance
Description: Supports the calculation of meteorological characteristics in
evapotranspiration research and reference crop evapotranspiration, and offers
three models to simulate crop evapotranspiration and soil water balance in
the field, including single crop coefficient and dual crop coefficient,
as well as the Shuttleworth-Wallace model. These calculations main refer to
Allen et al.(1998, ISBN:92-5-104219-5), Teh (2006, ISBN:1-58-112-998-X), and
Liu et al.(2006) <doi:10.1016/j.agwat.2006.01.018>.
Author: Minguo Liu [aut, cre],
Huimin Yang [dtc, fnd]
Maintainer: Minguo Liu <liumg15@lzu.edu.cn>
Diff between simET versions 1.0.2 dated 2023-08-10 and 1.0.3 dated 2023-08-19
simET-1.0.2/simET/R/simET.R |only simET-1.0.2/simET/man/simET.Rd |only simET-1.0.3/simET/DESCRIPTION | 6 +++--- simET-1.0.3/simET/MD5 | 6 +++--- simET-1.0.3/simET/R/simET-package.R |only simET-1.0.3/simET/man/simET-package.Rd |only 6 files changed, 6 insertions(+), 6 deletions(-)
Title: Database Agnostic Package to Generate and Process 'SQL' Queries
in R
Description: Allows the user to generate and execute select, insert, update and delete 'SQL' queries the underlying database without having to explicitly write 'SQL' code.
Author: Alejandro Baranek [cre, aut],
Leonardo Belen [aut]
Maintainer: Alejandro Baranek <abaranek@dc.uba.ar>
Diff between RSQL versions 0.2.1 dated 2022-05-21 and 0.2.2 dated 2023-08-19
DESCRIPTION | 12 +-- MD5 | 27 ++++--- NAMESPACE | 1 NEWS.md | 7 + R/dev/rsql-dev.R | 55 ++++++++++++++ R/sql-lib.R | 106 +++++++++++++++++++++++++--- R/util-lib.R | 21 +++++ R/zzz.R | 1 build/vignette.rds |binary inst/doc/rsql.html | 14 +-- man/RSQL.Rd | 1 man/RSQL.class.Rd | 153 +++++++++++++++++++++++------------------ man/assessRSqlDf.Rd |only man/is.POSIXct.Rd |only man/loggerSetupFile.Rd |only man/times_to_utc.Rd |only tests/testthat/test_util_lib.R |only 17 files changed, 295 insertions(+), 103 deletions(-)
Title: Reads Mass Spectrometry Data in mzXML Format
Description: Functions for reading mass spectrometry data in mzXML format.
Author: Sebastian Gibb [aut, cre]
Maintainer: Sebastian Gibb <mail@sebastiangibb.de>
Diff between readMzXmlData versions 2.8.2 dated 2022-11-08 and 2.8.3 dated 2023-08-19
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS | 4 ++++ R/package.R | 14 -------------- R/revfregexpr-functions.R | 8 ++++---- man/readMzXmlData-package.Rd | 14 -------------- man/revfregexpr.Rd | 2 +- 7 files changed, 20 insertions(+), 44 deletions(-)
Title: Functions for Analyzing Psychophysical Data in R
Description: An assortment of functions that could be useful in analyzing data from psychophysical experiments. It includes functions for calculating d' from several different experimental designs, links for m-alternative forced-choice (mafc) data to be used with the binomial family in glm (and possibly other contexts) and self-Start functions for estimating gamma values for CRT screen calibrations.
Author: Kenneth Knoblauch
Maintainer: Ken Knoblauch <ken.knoblauch@inserm.fr>
Diff between psyphy versions 0.2-3 dated 2022-01-03 and 0.3 dated 2023-08-19
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/NEWS | 3 +++ man/dprime.SD.Rd | 2 +- man/psyphy-package.Rd | 14 +++++++------- 5 files changed, 19 insertions(+), 16 deletions(-)
Title: Generalized Network-Based Dimensionality Reduction and Analysis
Description: Non-parametric dimensionality reduction function. Reduction with and without feature selection. Plot functions. Automated feature selections. Kosztyan et. al. (2022) <doi:10.1016/j.knosys.2022.109180>.
Author: Zsolt T. Kosztyan [aut, cre],
Marcell T. Kurbucz [aut],
Attila I. Katona [aut]
Maintainer: Zsolt T. Kosztyan <kosztyan.zsolt@gtk.uni-pannon.hu>
Diff between nda versions 0.1.11 dated 2023-06-18 and 0.1.12 dated 2023-08-19
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- inst/NEWS | 6 ++++++ man/nda.Rd | 3 ++- 4 files changed, 15 insertions(+), 8 deletions(-)
Title: Multivariate Analysis
Description: Package for multivariate analysis, having functions that perform simple correspondence analysis (CA) and multiple correspondence analysis (MCA), principal components analysis (PCA), canonical correlation analysis (CCA), factorial analysis (FA), multidimensional scaling (MDS), linear (LDA) and quadratic discriminant analysis (QDA), hierarchical and non-hierarchical cluster analysis, simple and multiple linear regression, multiple factor analysis (MFA) for quantitative, qualitative, frequency (MFACT) and mixed data, biplot, scatter plot, projection pursuit (PP), grant tour method and other useful functions for the multivariate analysis.
Author: Paulo Cesar Ossani <ossanipc@hotmail.com>
Marcelo Angelo Cirillo <macufla@des.ufla.br>
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar versions 2.2.0 dated 2023-08-09 and 2.2.1 dated 2023-08-19
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/MFA_English.R | 18 +++++++++--------- man/MVar-package.Rd | 6 +++--- 4 files changed, 19 insertions(+), 19 deletions(-)
Title: Data Sets and Scripts for Modeling Psychophysical Data in R
Description: Data sets and scripts for Modeling Psychophysical Data in R (Springer).
Author: Kenneth Knoblauch and Laurence T. Maloney
Maintainer: Ken Knoblauch <ken.knoblauch@inserm.fr>
Diff between MPDiR versions 0.1-20 dated 2021-08-18 and 0.2 dated 2023-08-19
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ inst/NEWS | 7 +++++++ man/Context.Rd | 2 +- man/MPDiR-package.Rd | 18 +++++++++--------- man/binom.diagnostics.Rd | 2 +- man/psyfun.boot.Rd | 4 ++-- 7 files changed, 30 insertions(+), 23 deletions(-)
Title: Prioritizing Cancer Driver Genes Using Genomics Data
Description: Cancer genomes contain large numbers of somatic alterations but few
genes drive tumor development. Identifying cancer driver genes is critical
for precision oncology. Most of current approaches either identify driver
genes based on mutational recurrence or using estimated scores predicting
the functional consequences of mutations. 'driveR' is a tool for
personalized or batch analysis of genomic data for driver gene prioritization
by combining genomic information and prior biological knowledge. As features,
'driveR' uses coding impact metaprediction scores, non-coding impact scores,
somatic copy number alteration scores, hotspot gene/double-hit gene
condition, 'phenolyzer' gene scores and memberships to cancer-related KEGG
pathways. It uses these features to estimate cancer-type-specific
probability for each gene of being a cancer driver using the related task of
a multi-task learning classification model. The method is described in detail
in Ulgen E, Sezerman OU. 2021. driveR: driveR: [...truncated...]
Author: Ege Ulgen [aut, cre, cph]
Maintainer: Ege Ulgen <egeulgen@gmail.com>
Diff between driveR versions 0.4.0 dated 2022-08-15 and 0.4.1 dated 2023-08-19
DESCRIPTION | 8 - MD5 | 16 +- NEWS.md | 13 - R/driveR.R | 3 README.md | 12 + build/vignette.rds |binary inst/CITATION | 4 inst/doc/how_to_use.html | 320 +++++++++++++++++++++++------------------------ man/driveR.Rd | 5 9 files changed, 195 insertions(+), 186 deletions(-)
Title: Check the Clustering Tendency
Description: Calculate some statistics aiming to help analyzing the clustering tendency of given data. In the first version, Hopkins statistic is implemented. See Hopkins and Skellam (1954) <doi:10.1093/oxfordjournals.aob.a083391>.
Author: Kevin Wright [aut, cre] ,
Luo YiLan [aut],
Zeng RuTong [aut]
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between clustertend versions 1.6 dated 2022-01-22 and 1.7 dated 2023-08-19
clustertend-1.6/clustertend/man/clustertend-package.Rd |only clustertend-1.7/clustertend/DESCRIPTION | 13 ++++----- clustertend-1.7/clustertend/LICENSE |only clustertend-1.7/clustertend/MD5 | 12 ++++---- clustertend-1.7/clustertend/NAMESPACE | 10 +++---- clustertend-1.7/clustertend/NEWS.md | 14 ++++++++-- clustertend-1.7/clustertend/R/hopkins.R | 17 ++++++------ clustertend-1.7/clustertend/man/hopkins.Rd | 23 ++++++----------- 8 files changed, 46 insertions(+), 43 deletions(-)
Title: Tools Inspired by 'Stata' to Manipulate Tabular Data
Description: A set of tools inspired by 'Stata' to explore data.frames ('summarize',
'tabulate', 'xtile', 'pctile', 'binscatter', elapsed quarters/month, lead/lag).
Author: Matthieu Gomez [aut, cre]
Maintainer: Matthieu Gomez <mg3901@columbia.edu>
Diff between statar versions 0.7.5 dated 2023-05-23 and 0.7.6 dated 2023-08-19
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- R/fill_gap.R | 11 ++++++++--- R/is.panel.R | 9 +++++++-- R/statar.R | 1 + R/sum_up.R | 1 - README.md | 8 +++++--- inst/doc/data-frames.html | 4 ++-- inst/doc/graph.html | 4 ++-- inst/doc/panel-data.html | 4 ++-- inst/doc/vector.html | 4 ++-- man/statar.Rd | 1 + 12 files changed, 44 insertions(+), 31 deletions(-)
Title: 'Rcpp' Bindings for 'Redis' using the 'hiredis' Library
Description: Connection to the 'Redis' key/value store using the
C-language client library 'hiredis' (included as a fallback) with
'MsgPack' encoding provided via 'RcppMsgPack' headers. It now also
includes the pub/sub functions from the 'rredis' package.
Author: Dirk Eddelbuettel and Bryan W. Lewis
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppRedis versions 0.2.3 dated 2023-03-08 and 0.2.4 dated 2023-08-19
ChangeLog | 17 +++++++++++++++++ DESCRIPTION | 11 +++++------ MD5 | 20 ++++++++++---------- README.md | 10 +++++----- build/vignette.rds |binary configure | 34 +++++++++++++++++----------------- configure.ac | 2 +- inst/NEWS.Rd | 12 ++++++++++-- inst/doc/market-monitoring.pdf |binary inst/doc/redis-introduction.pdf |binary man/rhiredis.Rd | 3 ++- 11 files changed, 67 insertions(+), 42 deletions(-)
Title: Quantile Regression
Description: Estimation and inference methods for models for conditional quantile functions:
Linear and nonlinear parametric and non-parametric (total variation penalized) models
for conditional quantiles of a univariate response and several methods for handling
censored survival data. Portfolio selection methods based on expected shortfall
risk are also now included. See Koenker, R. (2005) Quantile Regression, Cambridge U. Press,
<doi:10.1017/CBO9780511754098> and Koenker, R. et al. (2017) Handbook of Quantile Regression,
CRC Press, <doi:10.1201/9781315120256>.
Author: Roger Koenker [cre, aut],
Stephen Portnoy [ctb] ,
Pin Tian Ng [ctb] ,
Blaise Melly [ctb] ,
Achim Zeileis [ctb] ,
Philip Grosjean [ctb] ,
Cleve Moler [ctb] ,
Yousef Saad [ctb] ,
Victor Chernozhukov [ctb] ,
Ivan Fernandez-Val [ctb] ,
Brian D Ripley [tr [...truncated...]
Maintainer: Roger Koenker <rkoenker@illinois.edu>
Diff between quantreg versions 5.96 dated 2023-07-19 and 5.97 dated 2023-08-19
DESCRIPTION | 6 +++--- MD5 | 28 ++++++++++++++-------------- build/vignette.rds |binary inst/ChangeLog | 5 +++++ src/crqf.f | 6 +++--- src/qselect.f | 2 +- src/ratfor/qselect.r | 2 +- src/ratfor/rqfn.r | 8 ++++---- src/ratfor/rqfnb.r | 2 +- src/ratfor/rqfnc.r | 2 +- src/rqfn.f | 4 ++-- src/rqfnb.f | 2 +- src/rqfnc.f | 2 +- src/srqfn.f | 2 +- src/srqfnc.f | 2 +- 15 files changed, 39 insertions(+), 34 deletions(-)
Title: Partial Orders in Socio-Economics
Description: Implements tools for the analysis of partially ordered data, with a particular focus on the evaluation of multidimensional systems of indicators and on the analysis of poverty. References, Fattore M. (2016) <doi:10.1007/s11205-015-1059-6> Fattore M., Arcagni A. (2016) <doi:10.1007/s11205-016-1501-4> Arcagni A. (2017) <doi:10.1007/978-3-319-45421-4_19>.
Author: Alberto Arcagni [aut, cre],
Marco Fattore [aut]
Maintainer: Alberto Arcagni <alberto.arcagni@uniroma1.it>
Diff between parsec versions 1.2.6 dated 2022-03-25 and 1.2.7 dated 2023-08-19
DESCRIPTION | 11 +++++------ MD5 | 8 ++++---- NAMESPACE | 1 + R/AF2threshold.R | 13 +++++++++---- man/parsec-package.Rd | 9 --------- 5 files changed, 19 insertions(+), 23 deletions(-)
Title: Personalized Network-Based Anti-Cancer Therapy Evaluation
Description: Identification of the most appropriate pharmacotherapy for each
patient based on genomic alterations is a major challenge in personalized
oncology. 'PANACEA' is a collection of personalized anti-cancer drug
prioritization approaches utilizing network methods. The methods utilize
personalized "driverness" scores from 'driveR' to rank drugs, mapping these
onto a protein-protein interaction network. The "distance-based" method
scores each drug based on these scores and distances between drugs and genes
to rank given drugs. The "RWR" method propagates these scores via a
random-walk with restart framework to rank the drugs. The methods are
described in detail in Ulgen E, Ozisik O, Sezerman OU. 2023. PANACEA:
network-based methods for pharmacotherapy prioritization in personalized
oncology. Bioinformatics <doi:10.1093/bioinformatics/btad022>.
Author: Ege Ulgen [aut, cre, cph]
Maintainer: Ege Ulgen <egeulgen@gmail.com>
Diff between PANACEA versions 1.0.0 dated 2023-05-02 and 1.0.1 dated 2023-08-19
DESCRIPTION | 6 ++--- MD5 | 17 +++++++------- NEWS.md |only R/PANACEA.R | 3 -- R/wrapper.R | 2 - README.md | 12 +++++++--- build/vignette.rds |binary inst/doc/how_to_use.html | 54 +++++++++++++++++++++++------------------------ man/PANACEA.Rd | 5 ++++ man/score_drugs.Rd | 2 - 10 files changed, 56 insertions(+), 45 deletions(-)
Title: Fast, Easy, and Visual Bayesian Inference
Description: Accelerate Bayesian analytics workflows in 'R' through interactive modelling,
visualization, and inference. Define probabilistic graphical models using directed
acyclic graphs (DAGs) as a unifying language for business stakeholders, statisticians,
and programmers. This package relies on interfacing with the 'numpyro' python package.
Author: Adam Fleischhacker [aut, cre, cph],
Daniela Dapena [ctb],
Rose Nguyen [ctb],
Jared Sharpe [ctb]
Maintainer: Adam Fleischhacker <ajf@udel.edu>
Diff between causact versions 0.4.2 dated 2022-06-14 and 0.5.2 dated 2023-08-19
causact-0.4.2/causact/R/generate_dot2.R |only causact-0.4.2/causact/R/grViz2.R |only causact-0.4.2/causact/R/replaceLabels.R |only causact-0.4.2/causact/R/replace_in_spec2.R |only causact-0.4.2/causact/man/generate_dot2.Rd |only causact-0.4.2/causact/man/grViz2.Rd |only causact-0.4.2/causact/man/replaceLabels.Rd |only causact-0.4.2/causact/man/replace_in_spec2.Rd |only causact-0.4.2/causact/tests/testthat/test-dag_greta.R |only causact-0.4.2/causact/vignettes/narrative-to-insight-with-causact.Rmd.orig |only causact-0.5.2/causact/DESCRIPTION | 40 causact-0.5.2/causact/MD5 | 118 - causact-0.5.2/causact/NAMESPACE | 113 - causact-0.5.2/causact/NEWS.md | 9 causact-0.5.2/causact/R/addPriorGroups.R | 14 causact-0.5.2/causact/R/autoLabel.R | 15 causact-0.5.2/causact/R/bernoulliDist.R | 1 causact-0.5.2/causact/R/causact-package.R | 51 causact-0.5.2/causact/R/dag_create.R | 10 causact-0.5.2/causact/R/dag_diagrammer.R | 15 causact-0.5.2/causact/R/dag_dim.R | 8 causact-0.5.2/causact/R/dag_edge.R | 1 causact-0.5.2/causact/R/dag_greta.R | 284 --- causact-0.5.2/causact/R/dag_merge.R | 1 causact-0.5.2/causact/R/dag_node.R | 14 causact-0.5.2/causact/R/dag_numpyro.R |only causact-0.5.2/causact/R/dag_plate.R | 9 causact-0.5.2/causact/R/dag_render.R | 13 causact-0.5.2/causact/R/dagp_plot.R | 79 - causact-0.5.2/causact/R/data.R | 4 causact-0.5.2/causact/R/install_causact_deps.R |only causact-0.5.2/causact/R/meaningfulLabels.R | 4 causact-0.5.2/causact/R/probability_distributions.R |only causact-0.5.2/causact/R/setWorkflowDefaults.R | 8 causact-0.5.2/causact/R/utils.R | 283 ++- causact-0.5.2/causact/README.md | 317 ++-- causact-0.5.2/causact/build/vignette.rds |binary causact-0.5.2/causact/data/gymDF.rda |binary causact-0.5.2/causact/inst/CITATION |only causact-0.5.2/causact/inst/doc/narrative-to-insight-with-causact.Rmd | 23 causact-0.5.2/causact/inst/doc/narrative-to-insight-with-causact.html | 735 +++++++--- causact-0.5.2/causact/man/addPriorGroups.Rd | 4 causact-0.5.2/causact/man/baseballData.Rd | 4 causact-0.5.2/causact/man/causact-package.Rd | 4 causact-0.5.2/causact/man/check_r_causact_env.Rd |only causact-0.5.2/causact/man/corruptDF.Rd | 2 causact-0.5.2/causact/man/dag_diagrammer.Rd | 12 causact-0.5.2/causact/man/dag_greta.Rd | 112 - causact-0.5.2/causact/man/dag_node.Rd | 7 causact-0.5.2/causact/man/dag_numpyro.Rd |only causact-0.5.2/causact/man/dag_plate.Rd | 4 causact-0.5.2/causact/man/dag_render.Rd | 8 causact-0.5.2/causact/man/dagp_plot.Rd | 13 causact-0.5.2/causact/man/distributions.Rd |only causact-0.5.2/causact/man/figures/chimpsGraphPost-1.png |binary causact-0.5.2/causact/man/figures/gretaPost-1.png |binary causact-0.5.2/causact/man/figures/introScreenshot.png |only causact-0.5.2/causact/man/install_causact_deps.Rd |only causact-0.5.2/causact/man/meaningfulLabels.Rd | 2 causact-0.5.2/causact/man/setDirectedGraphTheme.Rd | 10 causact-0.5.2/causact/tests/testthat/test-addPriorGroups.R |only causact-0.5.2/causact/tests/testthat/test-bigModelsAndIntegration.R | 4 causact-0.5.2/causact/tests/testthat/test-dag_edge.R | 6 causact-0.5.2/causact/tests/testthat/test-dag_gretaDefunct.R |only causact-0.5.2/causact/tests/testthat/test-dag_numpyro.R |only causact-0.5.2/causact/tests/testthat/test-dag_numpyro2.R |only causact-0.5.2/causact/tests/testthat/test-dag_numpyroGamma.R |only causact-0.5.2/causact/tests/testthat/test-dag_plot.R | 3 causact-0.5.2/causact/tests/testthat/test-dag_render2.R |only causact-0.5.2/causact/tests/testthat/test-dag_render3.R |only causact-0.5.2/causact/tests/testthat/test-distributions.R |only causact-0.5.2/causact/tests/testthat/test-errorMessages.R |only causact-0.5.2/causact/tests/testthat/test-onLoadAndAttach.R |only causact-0.5.2/causact/tests/testthat/test-replaceSpec.R |only causact-0.5.2/causact/vignettes/narrative-to-insight-with-causact.Rmd | 23 75 files changed, 1360 insertions(+), 1027 deletions(-)
Title: Seismic Time Series Analysis Tools
Description: Multiple interactive codes to view and analyze seismic data, via spectrum analysis, wavelet transforms, particle motion, hodograms. Includes general time-series tools, plotting, filtering, interactive display.
Author: Jonathan M. Lees [aut, cre],
Jake Anderson [ctb],
Leonard Lisapaly [ctb],
Dave Harris [aut, cph]
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between RSEIS versions 4.1-5 dated 2023-08-10 and 4.1-6 dated 2023-08-19
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/RSEIS-package.Rd | 13 +------------ 3 files changed, 7 insertions(+), 18 deletions(-)
Title: Graphical User Interface (GUI) for Interactive R Analysis
Sessions
Description: Really Poor Man's Graphical User Interface, used to create interactive R analysis sessions with simple R commands.
Author: Jonathan M. Lees [aut, cre],
Jake Anderson [ctb]
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between RPMG versions 2.2-6 dated 2023-08-10 and 2.2-7 dated 2023-08-19
DESCRIPTION | 6 +++--- MD5 | 4 ++-- man/RPMG-package.Rd | 14 ++------------ 3 files changed, 7 insertions(+), 17 deletions(-)
Title: NASA POWER API Client
Description: An API client for NASA POWER global meteorology, surface solar
energy and climatology data API. POWER (Prediction Of Worldwide Energy
Resource) data are freely available for download with varying spatial
resolutions dependent on the original data and with several temporal
resolutions depending on the POWER parameter and community. This work is
funded through the NASA Earth Science Directorate Applied Science Program.
For more on the data themselves, the methodologies used in creating, a web-
based data viewer and web access, please see <https://power.larc.nasa.gov/>.
Author: Adam H. Sparks [aut, cre] ,
Scott Chamberlain [rev] ,
Hazel Kavili [rev] ,
Alison Boyer [rev] ,
Fernando Miguez [ctb] ,
Maelle Salmon [ctb] ,
Phillip D. Alderman [ctb] ` must use `I` for literal data as of
vroom 1.5.0.', see
<https://github.com/ropen [...truncated...]
Maintainer: Adam H. Sparks <adamhsparks@gmail.com>
Diff between nasapower versions 4.0.10 dated 2023-02-25 and 4.0.11 dated 2023-08-19
nasapower-4.0.10/nasapower/tests/fixtures/API_failure.yml |only nasapower-4.0.10/nasapower/tests/fixtures/adjusted_air_pressure.yml |only nasapower-4.0.10/nasapower/tests/fixtures/adjusted_wind_elevation.yml |only nasapower-4.0.10/nasapower/tests/fixtures/climatology_ag_point.yml |only nasapower-4.0.10/nasapower/tests/fixtures/daily_ag_point.yml |only nasapower-4.0.10/nasapower/tests/fixtures/daily_sb_point_LST.yml |only nasapower-4.0.10/nasapower/tests/fixtures/daily_sb_point_UTC.yml |only nasapower-4.0.10/nasapower/tests/fixtures/temporal_api-warning.yml |only nasapower-4.0.10/nasapower/tests/testthat/setup-nasapower.R |only nasapower-4.0.11/nasapower/.aspell |only nasapower-4.0.11/nasapower/DESCRIPTION | 61 ++-- nasapower-4.0.11/nasapower/MD5 | 51 +-- nasapower-4.0.11/nasapower/NEWS.md | 22 + nasapower-4.0.11/nasapower/R/get_power.R | 71 ++--- nasapower-4.0.11/nasapower/R/internal_functions.R | 18 - nasapower-4.0.11/nasapower/R/print_POWER_Info.R | 2 nasapower-4.0.11/nasapower/R/query_parameters.R | 19 - nasapower-4.0.11/nasapower/R/sysdata.rda |binary nasapower-4.0.11/nasapower/README.md | 131 ++++------ nasapower-4.0.11/nasapower/build/vignette.rds |binary nasapower-4.0.11/nasapower/inst/WORDLIST | 3 nasapower-4.0.11/nasapower/inst/doc/nasapower.Rmd | 44 +-- nasapower-4.0.11/nasapower/inst/doc/nasapower.html | 44 +-- nasapower-4.0.11/nasapower/man/get_power.Rd | 45 +-- nasapower-4.0.11/nasapower/man/nasapower-package.Rd | 6 nasapower-4.0.11/nasapower/man/query_parameters.Rd | 2 nasapower-4.0.11/nasapower/tests/fixtures/adjusted_air_pressure.json |only nasapower-4.0.11/nasapower/tests/fixtures/adjusted_wind_elevation.json |only nasapower-4.0.11/nasapower/tests/fixtures/climatology_ag_point.json |only nasapower-4.0.11/nasapower/tests/fixtures/daily_ag_point.json |only nasapower-4.0.11/nasapower/tests/fixtures/daily_sb_point_LST.json |only nasapower-4.0.11/nasapower/tests/fixtures/daily_sb_point_UTC.json |only nasapower-4.0.11/nasapower/tests/fixtures/temporal_api-warning.json |only nasapower-4.0.11/nasapower/tests/testthat/helper-vcr.R |only nasapower-4.0.11/nasapower/tests/testthat/test-get_power.R | 48 +-- nasapower-4.0.11/nasapower/vignettes/nasapower.Rmd | 44 +-- 36 files changed, 309 insertions(+), 302 deletions(-)
Title: Fitting and Forecasting Gegenbauer ARMA Time Series Models
Description: Methods for estimating univariate long memory-seasonal/cyclical
Gegenbauer time series processes. See for example (2022) <doi:10.1007/s00362-022-01290-3>.
Refer to the vignette for details of fitting these processes.
Author: Richard Hunt [aut, cre]
Maintainer: Richard Hunt <maint@huntemail.id.au>
Diff between garma versions 0.9.11 dated 2022-02-15 and 0.9.13 dated 2023-08-19
DESCRIPTION | 16 - MD5 | 23 - NAMESPACE | 1 NEWS.md | 4 R/garma-package.R | 5 R/garma_main.R | 160 +++++++++++-- build/vignette.rds |binary inst/doc/introduction.Rmd | 24 - inst/doc/introduction.html | 542 ++++++++++++++++++++++++++++++++++++--------- man/garma.Rd | 17 - man/predict.garma_model.Rd | 14 + man/predict2.Rd |only vignettes/introduction.Rmd | 24 - 13 files changed, 651 insertions(+), 179 deletions(-)
Title: Tools for Project Planning
Description: Supports the creation of 'burndown' charts and 'gantt' diagrams.
Author: Dan Kelley <Dan.Kelley@Dal.Ca> [aut,cre],
Frank Schmitt <frankschmitt@gmx.de> [aut]
Maintainer: Dan Kelley <Dan.Kelley@Dal.Ca>
Diff between plan versions 0.4-4 dated 2022-04-06 and 0.4-5 dated 2023-08-19
plan-0.4-4/plan/NEWS |only plan-0.4-5/plan/DESCRIPTION | 13 + plan-0.4-5/plan/MD5 | 24 +-- plan-0.4-5/plan/NEWS.md |only plan-0.4-5/plan/R/burndown.R | 120 ++++++++++------- plan-0.4-5/plan/R/plan-package.R | 4 plan-0.4-5/plan/README.md | 14 +- plan-0.4-5/plan/build/vignette.rds |binary plan-0.4-5/plan/inst/doc/plan.html | 196 ++++++++++++++-------------- plan-0.4-5/plan/man/as.burndown.Rd | 36 ++--- plan-0.4-5/plan/man/plan.Rd | 10 + plan-0.4-5/plan/man/plot-burndown-method.Rd | 6 plan-0.4-5/plan/man/read.gantt.Rd | 6 plan-0.4-5/plan/tests/testthat/Rplots.pdf |binary 14 files changed, 244 insertions(+), 185 deletions(-)
Title: Maximum Likelihood Estimation of a Log-Concave Density Based on
Censored Data
Description: Based on right or interval censored data, compute the maximum likelihood estimator of a (sub)probability density under the assumption that it is log-concave. For further information see Duembgen, Rufibach and Schuhmacher (2014) <doi:10.1214/14-EJS930>.
Author: Dominic Schuhmacher <dominic.schuhmacher@mathematik.uni-goettingen.de>, Kaspar Rufibach <kaspar.rufibach@gmail.com>, Lutz Duembgen <duembgen@stat.unibe.ch>
Maintainer: Dominic Schuhmacher <dominic.schuhmacher@mathematik.uni-goettingen.de>
Diff between logconcens versions 0.17-2 dated 2023-03-19 and 0.17-3 dated 2023-08-19
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ R/logconcens.R | 12 ++---------- README.md |only build/partial.rdb |binary man/logconcens-internal.Rd | 2 ++ man/logconcens-package.Rd | 10 +--------- src/logconcens.c | 16 +++------------- 8 files changed, 19 insertions(+), 42 deletions(-)
Title: Estimate Gaussian and Student's t Mixture Vector Autoregressive
Models
Description: Unconstrained and constrained maximum likelihood estimation of structural and reduced form
Gaussian mixture vector autoregressive, Student's t mixture vector autoregressive, and Gaussian and Student's t
mixture vector autoregressive models, quantile residual tests, graphical diagnostics,
simulations, forecasting, and estimation of generalized impulse response function and generalized
forecast error variance decomposition.
Leena Kalliovirta, Mika Meitz, Pentti Saikkonen (2016) <doi:10.1016/j.jeconom.2016.02.012>,
Savi Virolainen (2022) <arXiv:2007.04713>,
Savi Virolainen (2022) <arXiv:2109.13648>.
Author: Savi Virolainen [aut, cre]
Maintainer: Savi Virolainen <savi.virolainen@helsinki.fi>
Diff between gmvarkit versions 2.0.8 dated 2023-06-12 and 2.0.10 dated 2023-08-19
gmvarkit-2.0.10/gmvarkit/DESCRIPTION | 6 gmvarkit-2.0.10/gmvarkit/MD5 | 33 +- gmvarkit-2.0.10/gmvarkit/NAMESPACE | 1 gmvarkit-2.0.10/gmvarkit/NEWS.md | 8 gmvarkit-2.0.10/gmvarkit/R/WaldAndLR.R | 116 +++++++++- gmvarkit-2.0.10/gmvarkit/R/argumentChecks.R | 5 gmvarkit-2.0.10/gmvarkit/R/diagnosticPlot.R | 2 gmvarkit-2.0.10/gmvarkit/R/gmvarkit.R | 4 gmvarkit-2.0.10/gmvarkit/R/parameterReforms.R | 6 gmvarkit-2.0.10/gmvarkit/build/vignette.rds |binary gmvarkit-2.0.10/gmvarkit/inst/doc/gmvarkit-vignette.pdf |binary gmvarkit-2.0.10/gmvarkit/man/LR_test.Rd | 2 gmvarkit-2.0.10/gmvarkit/man/Rao_test.Rd |only gmvarkit-2.0.10/gmvarkit/man/Wald_test.Rd | 2 gmvarkit-2.0.10/gmvarkit/man/diagnostic_plot.Rd | 2 gmvarkit-2.0.10/gmvarkit/man/get_unconstrained_structural_pars.Rd | 4 gmvarkit-2.0.10/gmvarkit/man/gmvarkit-package.Rd |only gmvarkit-2.0.10/gmvarkit/man/warn_eigens.Rd | 6 gmvarkit-2.0.8/gmvarkit/man/gmvarkit.Rd |only 19 files changed, 156 insertions(+), 41 deletions(-)
Title: Predict Brain Asymmetry Based on Handedness and Dichotic
Listening
Description: Functional differences between the cerebral hemispheres
are a fundamental characteristic of the human brain. Researchers
interested in studying these differences often infer underlying
hemispheric dominance for a certain function (e.g., language) from
laterality indices calculated from observed performance or brain
activation measures . However, any inference from observed measures
to latent (unobserved) classes has to consider the prior probability
of class membership in the population. The provided functions
implement a Bayesian model for predicting hemispheric dominance from
observed laterality indices (Sorensen and Westerhausen, Laterality:
Asymmetries of Body, Brain and Cognition, 2020, <doi:10.1080/1357650X.2020.1769124>).
Author: Oystein Sorensen [aut, cre]
Maintainer: Oystein Sorensen <oystein.sorensen.1985@gmail.com>
Diff between BayesianLaterality versions 0.1.1 dated 2021-08-08 and 0.1.2 dated 2023-08-19
BayesianLaterality-0.1.1/BayesianLaterality/NEWS.md |only BayesianLaterality-0.1.1/BayesianLaterality/R/BayesianLaterality.R |only BayesianLaterality-0.1.1/BayesianLaterality/man/BayesianLaterality.Rd |only BayesianLaterality-0.1.2/BayesianLaterality/DESCRIPTION | 8 ++--- BayesianLaterality-0.1.2/BayesianLaterality/MD5 | 11 +++---- BayesianLaterality-0.1.2/BayesianLaterality/R/BayesianLaterality-package.R |only BayesianLaterality-0.1.2/BayesianLaterality/build/partial.rdb |binary BayesianLaterality-0.1.2/BayesianLaterality/inst/CITATION | 15 ++++------ BayesianLaterality-0.1.2/BayesianLaterality/man/BayesianLaterality-package.Rd |only 9 files changed, 16 insertions(+), 18 deletions(-)
More information about BayesianLaterality at CRAN
Permanent link
Title: Estimate Univariate Gaussian and Student's t Mixture
Autoregressive Models
Description: Maximum likelihood estimation of univariate Gaussian Mixture Autoregressive (GMAR),
Student's t Mixture Autoregressive (StMAR), and Gaussian and Student's t Mixture Autoregressive (G-StMAR) models,
quantile residual tests, graphical diagnostics, forecast and simulate from GMAR, StMAR and G-StMAR processes.
Leena Kalliovirta, Mika Meitz, Pentti Saikkonen (2015) <doi:10.1111/jtsa.12108>,
Mika Meitz, Daniel Preve, Pentti Saikkonen (2023) <doi:10.1080/03610926.2021.1916531>,
Savi Virolainen (2022) <doi:10.1515/snde-2020-0060>.
Author: Savi Virolainen [aut, cre]
Maintainer: Savi Virolainen <savi.virolainen@helsinki.fi>
Diff between uGMAR versions 3.4.4 dated 2023-02-15 and 3.4.5 dated 2023-08-19
uGMAR-3.4.4/uGMAR/man/uGMAR.Rd |only uGMAR-3.4.5/uGMAR/DESCRIPTION | 6 +++--- uGMAR-3.4.5/uGMAR/MD5 | 12 ++++++------ uGMAR-3.4.5/uGMAR/NEWS.md | 4 ++++ uGMAR-3.4.5/uGMAR/R/uGMAR.R | 4 ++-- uGMAR-3.4.5/uGMAR/build/vignette.rds |binary uGMAR-3.4.5/uGMAR/inst/doc/uGMARpaper.pdf |binary uGMAR-3.4.5/uGMAR/man/uGMAR-package.Rd |only 8 files changed, 15 insertions(+), 11 deletions(-)
Title: Statistical Inference in Partial Linear Regression Models
Description: Contains statistical inference tools applied to Partial Linear Regression (PLR) models. Specifically, point estimation, confidence intervals estimation, bandwidth selection, goodness-of-fit tests and analysis of covariance are considered. Kernel-based methods, combined with ordinary least squares estimation, are used and time series errors are allowed. In addition, these techniques are also implemented for both parametric (linear) and nonparametric regression models.
Author: German Aneiros Perez and Ana Lopez-Cheda
Maintainer: Ana Lopez-Cheda <ana.lopez.cheda@udc.es>
Diff between PLRModels versions 1.3 dated 2023-07-02 and 1.4 dated 2023-08-19
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/PLRModels.Rd | 9 +-------- 3 files changed, 7 insertions(+), 14 deletions(-)
Title: Convolution-Closed Models for Count Time Series
Description: Useful tools for fitting, validating, and forecasting of practical convolution-closed time series models for low counts are provided. Marginal distributions of the data can be modeled via Poisson and Generalized Poisson innovations. Regression effects can be modelled via time varying innovation rates. The models are described in Jung and Tremayne (2011) <doi:10.1111/j.1467-9892.2010.00697.x> and the model assessment tools are presented in Czado et al. (2009) <doi:10.1111/j.1541-0420.2009.01191.x>, Gneiting and Raftery (2007) <doi:10.1198/016214506000001437> and, Tsay (1992) <doi:10.2307/2347612>.
Author: Manuel Huth [aut, cre],
Robert C. Jung [aut],
Andy Tremayne [aut]
Maintainer: Manuel Huth <manuel.huth@yahoo.com>
Diff between coconots versions 1.1.1 dated 2023-03-29 and 1.1.2 dated 2023-08-19
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/coconots-package.Rd | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Biased Urn Model Distributions
Description: Statistical models of biased sampling in the form of
univariate and multivariate noncentral hypergeometric distributions,
including Wallenius' noncentral hypergeometric distribution and
Fisher's noncentral hypergeometric distribution.
See vignette("UrnTheory") for explanation of these distributions.
Literature:
Fog, A. (2008a). Calculation Methods for Wallenius' Noncentral Hypergeometric Distribution, Communications in Statistics, Simulation and Computation, 37(2) <doi:10.1080/03610910701790269>.
Fog, A. (2008b). Sampling methods for Wallenius’ and Fisher’s noncentral hypergeometric distributions, Communications in Statistics—Simulation and Computation, 37(2)
<doi:10.1080/03610910701790236>.
Author: Agner Fog
Maintainer: Agner Fog <agner@agner.org>
Diff between BiasedUrn versions 2.0.10 dated 2023-06-01 and 2.0.11 dated 2023-08-19
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/doc/UrnTheory.pdf |binary man/BiasedUrn-1-Package.Rd | 5 +++-- src/stoc1.cpp | 23 ++++++++++++----------- 5 files changed, 23 insertions(+), 21 deletions(-)
Title: Likelihood-Based Boosting for Generalized Mixed Models
Description: Likelihood-based boosting approaches for generalized mixed models are provided.
Author: Andreas Groll
Maintainer: Andreas Groll <groll@mathematik.uni-muenchen.de>
Diff between GMMBoost versions 1.1.3 dated 2020-02-03 and 1.1.5 dated 2023-08-19
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/OrdinalBoost.r | 26 +++++++++++++------------- R/bGLMM.r | 9 ++------- man/GMMBoost.Rd | 5 +++-- man/OrdinalBoostControl.rd | 2 +- 6 files changed, 28 insertions(+), 32 deletions(-)
Title: (Adaptive) Boosting Trees Algorithm
Description: Performs (Adaptive) Boosting Trees for Poisson distributed response variables, using log-link function.
The code approach is similar to the one used in 'gbm'/'gbm3'. Moreover, each tree in the expansion is built thanks to the 'rpart' package.
This package is based on following books and articles
Denuit, M., Hainaut, D., Trufin, J. (2019) <doi:10.1007/978-3-030-25820-7>
Denuit, M., Hainaut, D., Trufin, J. (2019) <doi:10.1007/978-3-030-57556-4>
Denuit, M., Hainaut, D., Trufin, J. (2019) <doi:10.1007/978-3-030-25827-6>
Denuit, M., Hainaut, D., Trufin, J. (2022) <doi:10.1080/03461238.2022.2037016>
Denuit, M., Huyghe, J., Trufin, J. (2022) <https://dial.uclouvain.be/pr/boreal/fr/object/boreal%3A244325/datastream/PDF_01/view>
Denuit, M., Trufin, J., Verdebout, T. (2022) <https://dial.uclouvain.be/pr/boreal/fr/object/boreal%3A268577>.
Author: Gireg Willame [aut, cre, cph]
Maintainer: Gireg Willame <gireg.willame@gmail.com>
Diff between BT versions 0.3 dated 2023-01-30 and 0.4 dated 2023-08-19
DESCRIPTION | 11 MD5 | 101 NAMESPACE | 8 R/BT.R | 386 +- R/BTCVFit.R | 2 R/BTFit.R | 14 R/BT_CV_Errors.R | 15 R/BT_CV_Predict.R | 43 R/BT_Call.R | 422 +- R/BT_Data_Split.R | 26 R/BT_More.R | 134 R/BT_Perf.R | 157 - R/BT_Perf_Plot.R | 142 R/BT_Predict.R | 143 R/BT_Print.R | 80 R/BT_Relative_Influence.R | 164 - R/BT_Summary.R | 93 R/BT_Utilities.R | 217 - R/BT_devTweedie.R | 45 R/data.R |only README.md | 2 data |only inst/doc/BT-usage-example.R | 339 +- inst/doc/BT-usage-example.Rmd | 690 ++-- inst/doc/BT-usage-example.html | 1295 ++++---- man/BT.Rd | 47 man/BTCVFit.Rd | 2 man/BTFit.Rd | 14 man/BT_Call.Rd | 16 man/BT_Simulated_Data.Rd |only man/BT_cv_errors.Rd | 7 man/BT_more.Rd | 2 man/BT_perf.Rd | 15 man/BT_relative_influence.Rd | 11 man/predict.BTCVFit.Rd | 1 man/predict.BTFit.Rd | 4 man/print.BTFit.Rd | 14 man/summary.BTFit.Rd | 10 tests/testthat/test-BTInputs.R | 681 ++-- tests/testthat/test-BT_CV_Errors_BT_CV_Predict.R | 224 - tests/testthat/test-BT_Data_Split.R | 193 - tests/testthat/test-BT_More.R | 503 ++- tests/testthat/test-BT_Perf.R | 1082 ++++--- tests/testthat/test-BT_Predict.R | 563 ++- tests/testthat/test-BT_Print.R | 498 ++- tests/testthat/test-BT_Relative_Influence.R | 1240 +++++--- tests/testthat/test-BT_ResultsComparison.R | 1491 +++++---- tests/testthat/test-BT_ResultsComparison2.R | 3510 +++++++++++++---------- tests/testthat/test-BT_SeedStability.R | 637 ++-- tests/testthat/test-BT_Summary.R | 1183 ++++++- tests/testthat/test-BT_callInit.R | 83 tests/testthat/test-BT_devTweedie.R | 252 + vignettes/BT-usage-example.Rmd | 690 ++-- 53 files changed, 11021 insertions(+), 6481 deletions(-)
Title: Fit High Dimensional Mixtures of Poisson GLMs
Description: Mixtures of Poisson Generalized Linear Models for high dimensional count data clustering. The (multivariate) responses can be partitioned into set of blocks. Three different parameterizations of the linear predictor are considered. The models are estimated according to the EM algorithm with an efficient initialization scheme <doi:10.1016/j.csda.2014.07.005>.
Author: Panagiotis Papastamoulis [aut, cre]
Maintainer: Panagiotis Papastamoulis <papapast@yahoo.gr>
Diff between poisson.glm.mix versions 1.3 dated 2022-05-07 and 1.4 dated 2023-08-19
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/poisson.glm.mix.Rd | 8 ++++---- 3 files changed, 10 insertions(+), 10 deletions(-)
More information about poisson.glm.mix at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-09 1.3
2017-03-13 1.2
2016-06-30 1.1
2015-04-01 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-19 1.0.1
2017-04-24 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-22 2.0.1
2013-12-02 2.0
2012-07-09 1.2
2012-03-27 1.1
2009-12-13 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-12 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-28 1.2
2017-11-03 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-14 4.7.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-05 1.0.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-26 0.4.0
2016-07-18 0.3.2
2014-06-13 0.3.1
2014-04-05 0.3
2013-10-17 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-25 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-31 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-06 1.10.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-06 1.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-12 0.0.2-1
Title: Send Email Messages
Description: A light, simple tool for sending emails with minimal dependencies.
Author: Andrew B. Collier [aut, cre, cph],
Matt Dennis [ctb],
Antoine Bichat [ctb] ,
Daniel Fahey [ctb],
Johann R. Kleinbub [ctb],
Panagiotis Moulos [ctb],
Swechhya Bista [ctb],
Colin Fay [ctb]
Maintainer: Andrew B. Collier <andrew@fathomdata.dev>
Diff between emayili versions 0.7.15 dated 2023-03-08 and 0.7.17 dated 2023-08-19
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 8 ++++++++ R/generics.R | 4 ++-- R/mime.R | 6 ++---- R/server.R | 43 ++++++++++++++++++++++++++++++++++++++----- README.md | 24 ++++++++++++++++-------- inst/WORDLIST | 4 ++++ man/server.Rd | 27 ++++++++++++++++++++++++++- 9 files changed, 108 insertions(+), 32 deletions(-)
Title: Tests for Rotational Symmetry on the Hypersphere
Description: Implementation of the tests for rotational symmetry on the
hypersphere proposed in García-Portugués, Paindaveine and Verdebout (2020)
<doi:10.1080/01621459.2019.1665527>. The package also implements the
proposed distributions on the hypersphere, based on the tangent-normal
decomposition, and allows for the replication of the data application
considered in the paper.
Author: Eduardo Garcia-Portugues [aut, cre]
,
Davy Paindaveine [aut],
Thomas Verdebout [aut]
Maintainer: Eduardo Garcia-Portugues <edgarcia@est-econ.uc3m.es>
Diff between rotasym versions 1.1.4 dated 2022-11-07 and 1.1.5 dated 2023-08-19
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 4 ++++ build/partial.rdb |binary inst/CITATION | 18 ++++++++++-------- src/Makevars | 4 ---- src/Makevars.win | 4 ---- src/vMF.cpp | 1 - 8 files changed, 26 insertions(+), 29 deletions(-)
Title: ODBC Database Access
Description: An ODBC database interface.
Author: Brian Ripley [aut, cre],
Michael Lapsley [aut]
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between RODBC versions 1.3-20 dated 2022-12-06 and 1.3-21 dated 2023-08-19
ChangeLog | 4 ++++ DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- build/vignette.rds |binary inst/doc/RODBC.pdf |binary man/RODBC-package.Rd | 3 ++- 6 files changed, 16 insertions(+), 11 deletions(-)
Title: Turn Geospatial Polygons into Regular or Hexagonal Grids
Description: Turn irregular polygons (such as geographical regions) into regular or hexagonal grids.
This package enables the generation of regular (square) and hexagonal grids through the package
'sp' and then assigns the content of the existing polygons to the new grid using
the Hungarian algorithm, Kuhn (1955) (<doi:10.1007/978-3-540-68279-0_2>).
This prevents the need for manual generation of hexagonal grids or regular grids
that are supposed to reflect existing geography.
Author: Joseph Bailey [aut, cph],
Ryan Hafen [ctb, cre] ,
Jakub Nowosad [ctb] ,
Lars Simon Zehnder [ctb]
Maintainer: Ryan Hafen <rhafen@gmail.com>
Diff between geogrid versions 0.1.1 dated 2018-12-11 and 0.1.2 dated 2023-08-19
DESCRIPTION | 25 +++----- LICENSE | 2 MD5 | 51 +++++++++--------- NAMESPACE | 2 R/assign_polygons.R | 37 ++++++++----- R/calculate_grid.R | 93 +++++++++++++++++++++------------ R/get_shape_details.R | 14 +++- R/read_polygons.R | 9 ++- README.md | 62 ++++++++++------------ build |only man/README_figs/README-example0-1.png |binary man/README_figs/README-example1-1.png |binary man/README_figs/README-example2-1.png |binary man/README_figs/README-example4-1.png |binary man/README_figs/README-example6-1.png |binary man/README_figs/README-example6a-1.png |binary man/README_figs/README-example7-1.png |binary man/README_figs/README-example8-1.png |binary man/assign_polygons.Rd | 12 ++-- man/calculate_cell_size.Rd | 30 +++++++--- man/calculate_grid.Rd | 55 +++++++++++++------ man/geogrid-package.Rd | 17 ++---- man/get_shape_details.Rd | 7 +- man/get_shape_details_internal.Rd | 7 +- man/read_polygons.Rd | 7 +- src/RcppExports.cpp | 5 + src/minimal-assignment.cpp | 2 27 files changed, 265 insertions(+), 172 deletions(-)
Title: Easily Work with 'Font Awesome' Icons
Description: Easily and flexibly insert 'Font Awesome' icons into 'R Markdown'
documents and 'Shiny' apps. These icons can be inserted into HTML content
through inline 'SVG' tags or 'i' tags. There is also a utility function for
exporting 'Font Awesome' icons as 'PNG' images for those situations where
raster graphics are needed.
Author: Richard Iannone [aut, cre] ,
Christophe Dervieux [ctb] ,
Winston Chang [ctb],
Dave Gandy [ctb, cph] ,
Posit Software, PBC [cph, fnd]
Maintainer: Richard Iannone <rich@posit.co>
Diff between fontawesome versions 0.5.1 dated 2023-04-18 and 0.5.2 dated 2023-08-19
DESCRIPTION | 6 +-- MD5 | 34 ++++++++++----------- NEWS.md | 4 ++ R/fa_brands.R | 2 - R/fa_version.R | 2 - R/sysdata.rda |binary inst/fontawesome/css/all.css | 17 +++++++++- inst/fontawesome/css/all.min.css | 4 +- inst/fontawesome/css/v4-shims.css | 2 - inst/fontawesome/css/v4-shims.min.css | 2 - inst/fontawesome/webfonts/fa-brands-400.ttf |binary inst/fontawesome/webfonts/fa-brands-400.woff2 |binary inst/fontawesome/webfonts/fa-regular-400.ttf |binary inst/fontawesome/webfonts/fa-regular-400.woff2 |binary inst/fontawesome/webfonts/fa-solid-900.ttf |binary inst/fontawesome/webfonts/fa-solid-900.woff2 |binary inst/fontawesome/webfonts/fa-v4compatibility.ttf |binary inst/fontawesome/webfonts/fa-v4compatibility.woff2 |binary 18 files changed, 46 insertions(+), 27 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-17 1.0.20
2018-12-19 1.0.19
2018-06-27 1.0.18
2018-06-25 1.0.17
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-13 0.5.0
2023-04-30 0.4.0
2023-03-16 0.3.0
2023-02-28 0.2.1
2023-02-18 0.2.0
2023-01-20 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-04-12 1.3.1
2023-02-27 1.3.0
2022-03-07 1.2.3
2021-12-10 1.2.2
2021-10-19 1.2.1
2021-09-12 1.2.0
2021-08-20 1.0.2
2021-08-11 1.0.1
2021-07-08 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-06 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-13 1.3.3
2020-03-19 1.3.2
2019-07-18 1.3.1
2019-01-18 1.2.7
2018-12-19 1.2.5
2018-09-25 1.2.3
2018-07-16 1.2.2
2018-07-06 1.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-18 1.7.12-4
2021-09-14 1.7.11-2
2019-10-23 1.7.10-6