Title: Rank Normal Transformation Omnibus Test
Description: Inverse normal transformation (INT) based genetic association testing. These tests are recommend for continuous traits with non-normally distributed residuals. INT-based tests robustly control the type I error in settings where standard linear regression does not, as when the residual distribution exhibits excess skew or kurtosis. Moreover, INT-based tests outperform standard linear regression in terms of power. These tests may be classified into two types. In direct INT (D-INT), the phenotype is itself transformed. In indirect INT (I-INT), phenotypic residuals are transformed. The omnibus test (O-INT) adaptively combines D-INT and I-INT into a single robust and statistically powerful approach. See McCaw ZR, Lane JM, Saxena R, Redline S, Lin X. "Operating characteristics of the rank-based inverse normal transformation for quantitative trait analysis in genome-wide association studies" <doi:10.1111/biom.13214>.
Author: Zachary McCaw [aut, cre]
Maintainer: Zachary McCaw <zmccaw@alumni.harvard.edu>
Diff between RNOmni versions 1.0.1 dated 2022-08-15 and 1.0.1.2 dated 2023-09-10
RNOmni-1.0.1.2/RNOmni/DESCRIPTION | 10 +++++----- RNOmni-1.0.1.2/RNOmni/MD5 | 10 +++++----- RNOmni-1.0.1.2/RNOmni/R/RNOmni-package.R |only RNOmni-1.0.1.2/RNOmni/man/RNOmni-package.Rd |only RNOmni-1.0.1.2/RNOmni/src/Makevars | 1 - RNOmni-1.0.1.2/RNOmni/src/Makevars.win | 1 - RNOmni-1.0.1/RNOmni/R/PackageHelp.R |only RNOmni-1.0.1/RNOmni/man/RNOmni-help.Rd |only 8 files changed, 10 insertions(+), 12 deletions(-)
Title: Sequential Monte Carlo Methods for 'nimble'
Description: Includes five particle filtering algorithms for use with state space
models in the 'nimble' system: 'Auxiliary', 'Bootstrap', 'Ensemble Kalman filter',
'Iterated Filtering 2', and 'Liu-West', as described in Michaud et al. (2021),
<doi:10.18637/jss.v100.i03>. A full User Manual is available at
<https://r-nimble.org>.
Author: Nick Michaud [aut],
Perry de Valpine [aut],
Christopher Paciorek [aut, cre],
Daniel Turek [aut],
Benjamin R. Goldstein [ctb] ,
Dao Nguyen [ctb] ,
The Regents of the University of California [cph]
Maintainer: Christopher Paciorek <paciorek@stat.berkeley.edu>
Diff between nimbleSMC versions 0.10.1 dated 2021-12-09 and 0.11.0 dated 2023-09-10
nimbleSMC-0.10.1/nimbleSMC/tests/testthat/filteringTestLog.Rout |only nimbleSMC-0.11.0/nimbleSMC/DESCRIPTION | 12 +-- nimbleSMC-0.11.0/nimbleSMC/MD5 | 29 ++++---- nimbleSMC-0.11.0/nimbleSMC/R/AuxiliaryFilter.R | 2 nimbleSMC-0.11.0/nimbleSMC/R/BootstrapFilter.R | 14 ++-- nimbleSMC-0.11.0/nimbleSMC/R/EnKFilter.R | 35 +++++----- nimbleSMC-0.11.0/nimbleSMC/R/IF2Filter.R | 2 nimbleSMC-0.11.0/nimbleSMC/R/LiuWestFilter.R | 2 nimbleSMC-0.11.0/nimbleSMC/R/utils.R | 5 + nimbleSMC-0.11.0/nimbleSMC/inst/test-utils/filteringTestLog_Correct.Rout | 10 +- nimbleSMC-0.11.0/nimbleSMC/man/buildAuxiliaryFilter.Rd | 2 nimbleSMC-0.11.0/nimbleSMC/man/buildBootstrapFilter.Rd | 2 nimbleSMC-0.11.0/nimbleSMC/man/buildEnsembleKF.Rd | 2 nimbleSMC-0.11.0/nimbleSMC/man/buildIteratedFilter2.Rd | 2 nimbleSMC-0.11.0/nimbleSMC/man/buildLiuWestFilter.Rd | 2 nimbleSMC-0.11.0/nimbleSMC/tests/testthat/test-filtering.R | 14 ++-- 16 files changed, 75 insertions(+), 60 deletions(-)
Title: Gaussian Process for Functional Data Analysis
Description: Functionalities for modelling functional data with
multidimensional inputs, multivariate functional data, and non-separable
and/or non-stationary covariance structure of function-valued processes.
In addition, there are functionalities for functional regression models where
the mean function depends on scalar and/or functional covariates and
the covariance structure depends on functional covariates.
The development version of the package can be found on
<https://github.com/gpfda/GPFDA-dev>.
Author: Jian Qing Shi, Yafeng Cheng, Evandro Konzen
Maintainer: Evandro Konzen <gpfda.r@gmail.com>
Diff between GPFDA versions 3.1.2 dated 2022-05-07 and 3.1.3 dated 2023-09-10
GPFDA-3.1.2/GPFDA/R/GPFDA.R |only GPFDA-3.1.2/GPFDA/R/co2.R |only GPFDA-3.1.2/GPFDA/data/co2.rda |only GPFDA-3.1.2/GPFDA/man/co2.Rd |only GPFDA-3.1.3/GPFDA/DESCRIPTION | 14 GPFDA-3.1.3/GPFDA/MD5 | 39 +- GPFDA-3.1.3/GPFDA/R/GPFDA-package.R |only GPFDA-3.1.3/GPFDA/build/vignette.rds |binary GPFDA-3.1.3/GPFDA/inst/doc/co2.R | 9 GPFDA-3.1.3/GPFDA/inst/doc/co2.Rmd | 16 GPFDA-3.1.3/GPFDA/inst/doc/co2.html | 416 +++++++++++++---------- GPFDA-3.1.3/GPFDA/inst/doc/gpfr.html | 390 ++++++++++++---------- GPFDA-3.1.3/GPFDA/inst/doc/gpr_ex1.html | 290 +++++++++------- GPFDA-3.1.3/GPFDA/inst/doc/gpr_ex2.html | 290 +++++++++------- GPFDA-3.1.3/GPFDA/inst/doc/mgpr.html | 423 +++++++++++++----------- GPFDA-3.1.3/GPFDA/inst/doc/nsgpr.html | 538 +++++++++++++++++-------------- GPFDA-3.1.3/GPFDA/man/GPFDA.Rd | 4 GPFDA-3.1.3/GPFDA/man/dataExampleGPFR.Rd | 6 GPFDA-3.1.3/GPFDA/man/dataExampleMGPR.Rd | 6 GPFDA-3.1.3/GPFDA/src/Makevars | 1 GPFDA-3.1.3/GPFDA/src/Makevars.win | 1 GPFDA-3.1.3/GPFDA/src/RcppExports.cpp | 5 GPFDA-3.1.3/GPFDA/vignettes/co2.Rmd | 16 23 files changed, 1371 insertions(+), 1093 deletions(-)
Title: Fitting an Interval Response Variable Using `gamlss.family'
Distributions
Description: This is an add-on package to GAMLSS. The purpose of this
package is to allow users to fit interval response variables in
GAMLSS models. The main function gen.cens() generates a
censored version of an existing GAMLSS family distribution.
Author: Mikis Stasinopoulos <d.stasinopoulos@gre.ac.uk>, Bob
Rigby, Nicoleta Mortan, Alexander Seipp
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@gre.ac.uk>
Diff between gamlss.cens versions 5.0-1 dated 2018-06-11 and 5.0-5 dated 2023-09-10
DESCRIPTION | 16 +++--- MD5 | 31 ++++++------ NAMESPACE | 2 R/cens.R | 12 +++-- R/cens.d.R | 27 +++++++---- R/cens.p.R | 8 +++ R/gen.cens.R | 76 +++++++++++++++++-------------- R/resid.surv.R |only build/partial.rdb |binary data/lip.rda |binary man/cens.Rd | 14 +++-- man/cens.d.Rd | 14 +++-- man/cens.p.Rd | 16 ++++-- man/cens.q.Rd | 102 ++++++++++++++++++++++-------------------- man/gamlss.cens-package.Rd | 7 ++ man/gen.cens.Rd | 20 +++++--- man/lip.Rd | 108 ++++++++++++++++++++++----------------------- 17 files changed, 256 insertions(+), 197 deletions(-)
Title: Check-Fields and Check-Boxes for 'rmarkdown'
Description: Creates auto-grading check-fields and check-boxes for 'rmarkdown'
or 'quarto' html. It could be used in class, when teacher share materials
and tasks, so student can solve some problems and check themselves. In
contrast to the 'learnr' package the 'checkdown' package works serverlessly
without 'shiny'.
Author: George Moroz [aut, cre]
Maintainer: George Moroz <agricolamz@gmail.com>
Diff between checkdown versions 0.0.8 dated 2023-08-27 and 0.0.9 dated 2023-09-10
DESCRIPTION | 12 - MD5 | 20 +- NAMESPACE | 1 NEWS | 8 R/check_hint.R | 12 - R/check_question.R | 184 ++++++++++++++++-- inst/doc/start_checkdown.R | 36 ++- inst/doc/start_checkdown.Rmd | 64 ++++-- inst/doc/start_checkdown.html | 420 ++++++++++++++++++++++++++++-------------- man/check_question.Rd | 20 +- vignettes/start_checkdown.Rmd | 64 ++++-- 11 files changed, 609 insertions(+), 232 deletions(-)
Title: Bayesian Multilevel Mediation
Description: Easy estimation of Bayesian multilevel mediation models with Stan.
Author: Matti Vuorre [aut, cre]
Maintainer: Matti Vuorre <m.j.vuorre@tilburguniversity.edu>
Diff between bmlm versions 1.3.13 dated 2023-08-30 and 1.3.14 dated 2023-09-10
bmlm-1.3.13/bmlm/src/Makevars |only bmlm-1.3.13/bmlm/src/Makevars.win |only bmlm-1.3.13/bmlm/src/stanExports_bmlm.cc |only bmlm-1.3.13/bmlm/src/stanExports_bmlm.h |only bmlm-1.3.13/bmlm/src/stanExports_bmlm_binary_y.cc |only bmlm-1.3.13/bmlm/src/stanExports_bmlm_binary_y.h |only bmlm-1.3.14/bmlm/DESCRIPTION | 18 ++++++++++-------- bmlm-1.3.14/bmlm/MD5 | 14 ++++---------- bmlm-1.3.14/bmlm/NEWS.md | 5 +++++ bmlm-1.3.14/bmlm/README.md | 20 ++++++++++---------- bmlm-1.3.14/bmlm/inst/CITATION | 2 +- 11 files changed, 30 insertions(+), 29 deletions(-)
Title: Bayesian Statistical Process Monitoring
Description: The R-package bayespm implements Bayesian Statistical Process Control and Monitoring (SPC/M) methodology. These methods utilize available prior information and/or historical data, providing efficient online quality monitoring of a process, in terms of identifying moderate/large transient shifts (i.e., outliers) or persistent shifts of medium/small size in the process. These self-starting, sequentially updated tools can also run under complete absence of any prior information. The Predictive Control Charts (PCC) are introduced for the quality monitoring of data from any discrete or continuous distribution that is a member of the regular exponential family. The Predictive Ratio CUSUMs (PRC) are introduced for the Binomial, Poisson and Normal data (a later version of the library will cover all the remaining distributions from the regular exponential family). The PCC targets transient process shifts of typically large size (a.k.a. outliers), while PRC is focused in detecting persistent (st [...truncated...]
Author: Dimitrios Kiagias [aut, cre, cph],
Konstantinos Bourazas [aut, cph],
Panagiotis Tsiamyrtzis [aut, cph]
Maintainer: Dimitrios Kiagias <kiagias.dim@gmail.com>
Diff between bayespm versions 0.1.0 dated 2023-07-05 and 0.2.0 dated 2023-09-10
DESCRIPTION | 12 ++++++------ MD5 | 36 ++++++++++++++++++++++++------------ NAMESPACE | 3 ++- R/binom_PCC.R | 2 +- R/binom_PRC.R |only R/binom_PRC_h.R |only R/gamma_PCC.R | 2 +- R/invgamma_PCC.R | 2 +- R/lnorm1_PCC.R | 2 +- R/lnorm2_PCC.R | 2 +- R/lnorm3_PCC.R | 2 +- R/nbinom_PCC.R | 2 +- R/norm1_PCC.R | 2 +- R/norm2_PCC.R | 2 +- R/norm3_PCC.R | 2 +- R/norm_mean2_PRC.R |only R/norm_mean2_PRC_h.R |only R/pois_PRC.R |only R/pois__PRC_h.R |only man/binom_PRC.Rd |only man/binom_PRC_h.Rd |only man/norm_mean2_PRC.Rd |only man/norm_mean2_PRC_h.Rd |only man/pois_PRC.Rd |only man/pois_PRC_h.Rd |only 25 files changed, 42 insertions(+), 29 deletions(-)
Title: A 'DuckDB'-Backed Version of 'dplyr'
Description: A drop-in replacement for 'dplyr', powered by 'DuckDB' for performance.
Also defines a set of generics that provide a low-level
implementer's interface for the high-level user interface of 'dplyr'.
Author: Hannes Muehleisen [aut] ,
Kirill Mueller [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckplyr versions 0.1.0 dated 2023-07-07 and 0.2.0 dated 2023-09-10
duckplyr-0.1.0/duckplyr/R/utils.R |only duckplyr-0.2.0/duckplyr/.aspell/duckplyr.rds |binary duckplyr-0.2.0/duckplyr/DESCRIPTION | 34 - duckplyr-0.2.0/duckplyr/MD5 | 213 ++++++ duckplyr-0.2.0/duckplyr/NAMESPACE | 334 ++++++++++ duckplyr-0.2.0/duckplyr/NEWS.md | 5 duckplyr-0.2.0/duckplyr/R/aaa-meta.R |only duckplyr-0.2.0/duckplyr/R/add_count.R |only duckplyr-0.2.0/duckplyr/R/anti_join.R |only duckplyr-0.2.0/duckplyr/R/arrange.R |only duckplyr-0.2.0/duckplyr/R/as_duckplyr_df.R |only duckplyr-0.2.0/duckplyr/R/auto_copy.R |only duckplyr-0.2.0/duckplyr/R/collapse.R |only duckplyr-0.2.0/duckplyr/R/collect.R |only duckplyr-0.2.0/duckplyr/R/compute.R |only duckplyr-0.2.0/duckplyr/R/count.R |only duckplyr-0.2.0/duckplyr/R/cross_join.R |only duckplyr-0.2.0/duckplyr/R/csv.R |only duckplyr-0.2.0/duckplyr/R/distinct.R |only duckplyr-0.2.0/duckplyr/R/do.R |only duckplyr-0.2.0/duckplyr/R/dots.R |only duckplyr-0.2.0/duckplyr/R/dplyr-reimplement.R |only duckplyr-0.2.0/duckplyr/R/dplyr.R |only duckplyr-0.2.0/duckplyr/R/dplyr_reconstruct.R |only duckplyr-0.2.0/duckplyr/R/duckdb.R |only duckplyr-0.2.0/duckplyr/R/duckplyr-package.R |only duckplyr-0.2.0/duckplyr/R/explain.R |only duckplyr-0.2.0/duckplyr/R/filter.R |only duckplyr-0.2.0/duckplyr/R/full_join.R |only duckplyr-0.2.0/duckplyr/R/globals.R |only duckplyr-0.2.0/duckplyr/R/group_vars.R |only duckplyr-0.2.0/duckplyr/R/head.R |only duckplyr-0.2.0/duckplyr/R/inner_join.R |only duckplyr-0.2.0/duckplyr/R/intersect.R |only duckplyr-0.2.0/duckplyr/R/is_duckplyr_df.R |only duckplyr-0.2.0/duckplyr/R/join.R |only duckplyr-0.2.0/duckplyr/R/left_join.R |only duckplyr-0.2.0/duckplyr/R/methods.R |only duckplyr-0.2.0/duckplyr/R/mutate.R |only duckplyr-0.2.0/duckplyr/R/nest_by.R |only duckplyr-0.2.0/duckplyr/R/nest_join.R |only duckplyr-0.2.0/duckplyr/R/oo.R |only duckplyr-0.2.0/duckplyr/R/overwrite.R |only duckplyr-0.2.0/duckplyr/R/project.R |only duckplyr-0.2.0/duckplyr/R/pull.R |only duckplyr-0.2.0/duckplyr/R/reframe.R |only duckplyr-0.2.0/duckplyr/R/relational-altrep-wrap.R |only duckplyr-0.2.0/duckplyr/R/relational-df.R |only duckplyr-0.2.0/duckplyr/R/relational-duckdb.R |only duckplyr-0.2.0/duckplyr/R/relational-expr.R | 44 + duckplyr-0.2.0/duckplyr/R/relational-rel.R | 62 + duckplyr-0.2.0/duckplyr/R/relational.R |only duckplyr-0.2.0/duckplyr/R/relocate.R |only duckplyr-0.2.0/duckplyr/R/rename.R |only duckplyr-0.2.0/duckplyr/R/rename_with.R |only duckplyr-0.2.0/duckplyr/R/restore.R |only duckplyr-0.2.0/duckplyr/R/right_join.R |only duckplyr-0.2.0/duckplyr/R/rows_append.R |only duckplyr-0.2.0/duckplyr/R/rows_delete.R |only duckplyr-0.2.0/duckplyr/R/rows_insert.R |only duckplyr-0.2.0/duckplyr/R/rows_patch.R |only duckplyr-0.2.0/duckplyr/R/rows_update.R |only duckplyr-0.2.0/duckplyr/R/rows_upsert.R |only duckplyr-0.2.0/duckplyr/R/sample_frac.R |only duckplyr-0.2.0/duckplyr/R/sample_n.R |only duckplyr-0.2.0/duckplyr/R/select.R |only duckplyr-0.2.0/duckplyr/R/semi_join.R |only duckplyr-0.2.0/duckplyr/R/setdiff.R |only duckplyr-0.2.0/duckplyr/R/setequal.R |only duckplyr-0.2.0/duckplyr/R/slice.R |only duckplyr-0.2.0/duckplyr/R/slice_head.R |only duckplyr-0.2.0/duckplyr/R/slice_max.R |only duckplyr-0.2.0/duckplyr/R/slice_min.R |only duckplyr-0.2.0/duckplyr/R/slice_sample.R |only duckplyr-0.2.0/duckplyr/R/slice_tail.R |only duckplyr-0.2.0/duckplyr/R/stats.R |only duckplyr-0.2.0/duckplyr/R/summarise.R |only duckplyr-0.2.0/duckplyr/R/symdiff.R |only duckplyr-0.2.0/duckplyr/R/tally.R |only duckplyr-0.2.0/duckplyr/R/tpch.R |only duckplyr-0.2.0/duckplyr/R/tpch2.R |only duckplyr-0.2.0/duckplyr/R/transmute.R |only duckplyr-0.2.0/duckplyr/R/ungroup.R |only duckplyr-0.2.0/duckplyr/R/union.R |only duckplyr-0.2.0/duckplyr/R/union_all.R |only duckplyr-0.2.0/duckplyr/R/zzz.R |only duckplyr-0.2.0/duckplyr/README.md | 227 ++++++ duckplyr-0.2.0/duckplyr/man/as_duckplyr_df.Rd |only duckplyr-0.2.0/duckplyr/man/duckdb_from_file.Rd |only duckplyr-0.2.0/duckplyr/man/duckdb_rel_from_df.Rd |only duckplyr-0.2.0/duckplyr/man/duckplyr-package.Rd |only duckplyr-0.2.0/duckplyr/man/duckplyr_df_from_file.Rd |only duckplyr-0.2.0/duckplyr/man/expr.Rd | 23 duckplyr-0.2.0/duckplyr/man/is_duckplyr_df.Rd |only duckplyr-0.2.0/duckplyr/man/methods_overwrite.Rd |only duckplyr-0.2.0/duckplyr/man/reexports.Rd |only duckplyr-0.2.0/duckplyr/man/rel_from_df.Rd |only duckplyr-0.2.0/duckplyr/man/relational.Rd | 28 duckplyr-0.2.0/duckplyr/man/stats_show.Rd |only duckplyr-0.2.0/duckplyr/man/wrap_df.Rd |only duckplyr-0.2.0/duckplyr/man/wrap_integer.Rd |only duckplyr-0.2.0/duckplyr/src |only duckplyr-0.2.0/duckplyr/tests/testthat/_snaps/across.md |only duckplyr-0.2.0/duckplyr/tests/testthat/_snaps/all-equal.md |only duckplyr-0.2.0/duckplyr/tests/testthat/_snaps/arrange.md |only duckplyr-0.2.0/duckplyr/tests/testthat/_snaps/colwise-select.md |only duckplyr-0.2.0/duckplyr/tests/testthat/_snaps/count-tally.md |only 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duckplyr-0.2.0/duckplyr/tests/testthat/_snaps/summarise.md |only duckplyr-0.2.0/duckplyr/tests/testthat/helper-encoding.R |only duckplyr-0.2.0/duckplyr/tests/testthat/helper-list_of.R |only duckplyr-0.2.0/duckplyr/tests/testthat/helper-s3.R |only duckplyr-0.2.0/duckplyr/tests/testthat/helper-taxi.R |only duckplyr-0.2.0/duckplyr/tests/testthat/setup.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-across.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-all-equal.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-arrange.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-as_duckplyr_df.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-attrib.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-colwise-select.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-count-tally.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-demo.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-deprec-do.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-deprec-funs.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-df.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-distinct.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-dplyr.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-duckplyr.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-expr.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-filter.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-generics.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-group-map.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-groups-with.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-join.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-mutate.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-prom.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-pull.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-rel.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-rel_api.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-relational-duckdb.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-relational.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-relocate.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-rename.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-select.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-sets.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-slice.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-summarise.R |only duckplyr-0.2.0/duckplyr/tests/testthat/test-transmute.R |only duckplyr-0.2.0/duckplyr/tests/testthat/tpch-sf0.01 |only duckplyr-0.2.0/duckplyr/tests/testthat/tpch-sf1 |only duckplyr-0.2.0/duckplyr/tests/testthat/utf-8.txt |only 165 files changed, 913 insertions(+), 57 deletions(-)
Title: Modelling Dependence with Multivariate Archimax (or any
User-Defined Continuous) Copulas
Description: Archimax copulas are mixture of Archimedean and EV copulas. The package provides definitions of several parametric families of generator and dependence function, computes CDF and PDF, estimates parameters, tests for goodness of fit, generates random sample and checks copula properties for custom constructs. In 2-dimensional case explicit formulas for density are used, contrary to higher dimensions when all derivatives are linearly approximated. Several non-archimax families (normal, FGM, Plackett) are provided as well.
Author: Tomas Bacigal
Maintainer: Tomas Bacigal <bacigal@math.sk>
Diff between acopula versions 0.9.3 dated 2018-12-05 and 0.9.4 dated 2023-09-10
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS | 6 ++++++ inst/CITATION | 8 ++++---- inst/doc/acopula-userguide_0.9.2.pdf |binary man/acopula-package.Rd | 7 ------- man/depfun.Rd | 2 +- 7 files changed, 22 insertions(+), 23 deletions(-)
Title: Interface Between 'GRASS' Geographical Information System and
'R'
Description: An interface between the 'GRASS' geographical information system ('GIS') and 'R', based on starting 'R' from within the 'GRASS' 'GIS' environment, or running a free-standing 'R' session in a temporary 'GRASS' location; the package provides facilities for using all 'GRASS' commands from the 'R' command line. The original interface package for 'GRASS 5' (2000-2010) is described in Bivand (2000) <doi:10.1016/S0098-3004(00)00057-1> and Bivand (2001) <https://www.r-project.org/conferences/DSC-2001/Proceedings/Bivand.pdf>. This was succeeded by 'spgrass6' for 'GRASS 6' (2006-2016) and 'rgrass7' for 'GRASS 7' (2015-present). The 'rgrass' package modernizes the interface for 'GRASS 8' while still permitting the use of 'GRASS 7'.
Author: Roger Bivand [cre, aut] ,
Rainer Krug [ctb] ,
Robin Lovelace [ctb] ,
Markus Neteler [ctb] ,
Sebastian Jeworutzki [ctb] ,
Floris Vanderhaeghe [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgrass versions 0.3-8 dated 2023-03-17 and 0.3-9 dated 2023-09-10
DESCRIPTION | 8 MD5 | 20 NEWS.md | 8 R/initGRASS.R | 3 R/rast_link.R | 4 build/vignette.rds |binary inst/doc/coerce.html | 1635 ++++++++++++++++++++++++++++++++++++++++++++++----- inst/doc/use.Rmd | 2 inst/doc/use.html | 1548 ++++++++++++++++++++++++++++++++++++++++++++---- tests |only vignettes/use.Rmd | 2 11 files changed, 2928 insertions(+), 302 deletions(-)
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent
access to information contained in various R models, like model
formulas, model terms, information about random effects, data that was
used to fit the model or data from response variables. 'insight'
mainly revolves around two types of functions: Functions that find
(the names of) information, starting with 'find_', and functions that
get the underlying data, starting with 'get_'. The package has a
consistent syntax and works with many different model objects, where
otherwise functions to access these information are missing.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb]
,
Brenton M. Wiernik [aut, ctb] ,
Vincent Arel-Bundock [aut, ctb]
,
Etienne Bacher [aut, ctb] ,
Ale [...truncated...]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between insight versions 0.19.3 dated 2023-06-29 and 0.19.4 dated 2023-09-10
DESCRIPTION | 20 +- MD5 | 45 +++--- NEWS.md | 20 ++ R/check_if_installed.R | 49 ++++++ R/export_table.R | 2 R/find_statistic.R | 14 + R/format_value.R | 5 R/get_predicted_args.R | 4 R/get_predicted_bayesian.R | 2 R/model_info.R | 14 - R/utilities.R | 2 inst/doc/display.html | 212 ++++++++++++++--------------- man/check_if_installed.Rd | 13 + man/model_info.Rd | 14 - tests/testthat/_snaps/format_table.md | 32 ++-- tests/testthat/_snaps/mipo.md | 52 +++---- tests/testthat/test-check_if_installed.R | 42 +++++ tests/testthat/test-export_table.R | 14 + tests/testthat/test-fixest.R | 32 +++- tests/testthat/test-get_modelmatrix.R | 20 +- tests/testthat/test-get_predicted.R | 220 +++++++++++++++++-------------- tests/testthat/test-ivreg_AER.R | 38 +++-- tests/testthat/test-panelr.R |only tests/testthat/test-utilities.R | 7 24 files changed, 525 insertions(+), 348 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-04 0.3.0
2018-07-05 0.2.6
2016-07-18 0.2.5
2016-07-15 0.2.4
Title: Read and Write ODS Files
Description: Read ODS (OpenDocument Spreadsheet) into R as data frame. Also support writing data frame into ODS file.
Author: Gerrit-Jan Schutten [aut],
Chung-hong Chan [aut, cre] ,
Peter Brohan [aut],
Detlef Steuer [aut] ,
Thomas J. Leeper [aut] ,
John Foster [ctb],
Sergio Oller [ctb],
Jim Hester [ctb] ,
Stephen Watts [ctb],
Arthur Katossky [ctb],
Stas Malavin [ctb],
Dunca [...truncated...]
Maintainer: Chung-hong Chan <chainsawtiney@gmail.com>
Diff between readODS versions 2.0.0 dated 2023-08-10 and 2.1.0 dated 2023-09-10
readODS-2.0.0/readODS/R/writeODS.R |only readODS-2.1.0/readODS/DESCRIPTION | 14 readODS-2.1.0/readODS/MD5 | 72 - readODS-2.1.0/readODS/NAMESPACE | 1 readODS-2.1.0/readODS/NEWS.md | 92 ++ readODS-2.1.0/readODS/R/cpp11.R | 24 readODS-2.1.0/readODS/R/list_ods_sheets.R | 16 readODS-2.1.0/readODS/R/read_ods.R | 206 ++-- readODS-2.1.0/readODS/R/sysdata.rda |binary readODS-2.1.0/readODS/R/utils.R | 30 readODS-2.1.0/readODS/R/write_ods.R |only readODS-2.1.0/readODS/README.md | 54 - readODS-2.1.0/readODS/inst/WORDLIST | 2 readODS-2.1.0/readODS/inst/doc/overview.R | 9 readODS-2.1.0/readODS/inst/doc/overview.Rmd | 19 readODS-2.1.0/readODS/inst/doc/overview.html | 444 +++++----- readODS-2.1.0/readODS/man/list_ods_sheets.Rd | 5 readODS-2.1.0/readODS/man/read_ods.Rd | 10 readODS-2.1.0/readODS/man/write_ods.Rd | 44 readODS-2.1.0/readODS/src/cpp11.cpp | 52 - readODS-2.1.0/readODS/src/get_sheet_names.cpp | 13 readODS-2.1.0/readODS/src/is_ods.cpp | 17 readODS-2.1.0/readODS/src/rapidxml/rapidxml_ext.hpp |only readODS-2.1.0/readODS/src/rapidxml/rapidxml_iterators.hpp |only readODS-2.1.0/readODS/src/rapidxml/rapidxml_print.hpp |only readODS-2.1.0/readODS/src/rapidxml/rapidxml_utils.hpp |only readODS-2.1.0/readODS/src/read_flat_ods_.cpp | 26 readODS-2.1.0/readODS/src/read_ods_.cpp | 17 readODS-2.1.0/readODS/src/read_ods_internals.h | 3 readODS-2.1.0/readODS/src/splice.cpp |only readODS-2.1.0/readODS/src/splice.h |only readODS-2.1.0/readODS/src/write_sheet_file_.cpp |only readODS-2.1.0/readODS/src/write_sheet_file_.h |only readODS-2.1.0/readODS/tests/testdata/flights_head.RDS |only readODS-2.1.0/readODS/tests/testthat/plant.ods |only readODS-2.1.0/readODS/tests/testthat/test_col_types.R | 63 + readODS-2.1.0/readODS/tests/testthat/test_list_sheets.R | 18 readODS-2.1.0/readODS/tests/testthat/test_read_fods.R | 28 readODS-2.1.0/readODS/tests/testthat/test_read_ods.R | 91 +- readODS-2.1.0/readODS/tests/testthat/test_write_ods.R | 151 +++ readODS-2.1.0/readODS/tests/testthat/test_write_ods_append_update.R | 133 +- readODS-2.1.0/readODS/tests/testthat/test_write_sheet.R | 41 readODS-2.1.0/readODS/vignettes/overview.Rmd | 19 43 files changed, 1129 insertions(+), 585 deletions(-)
Title: Analysis of Ecological Dynamic Regimes
Description: A toolbox for implementing the Ecological Dynamic Regime framework
(Sánchez-Pinillos et al., 2023 <doi:10.1002/ecm.1589>) to
characterize and compare groups of ecological trajectories in multidimensional
spaces defined by state variables. The package includes the RETRA-EDR algorithm
to identify representative trajectories, functions to generate, summarize,
and visualize representative trajectories, and several metrics to quantify
the distribution and heterogeneity of trajectories in an ecological dynamic
regime and quantify the dissimilarity between two or more ecological dynamic
regimes.
Author: Martina Sanchez-Pinillos [aut, cre, cph]
Maintainer: Martina Sanchez-Pinillos <martina.sanchez.pinillos@gmail.com>
Diff between ecoregime versions 0.1.2 dated 2023-08-11 and 0.1.3 dated 2023-09-10
DESCRIPTION | 9 +++---- MD5 | 12 ++++----- NEWS.md | 4 +++ R/dist_edr.R | 33 +++++++++++++------------- man/ecoregime-package.Rd | 1 tests/testthat/Rplots.pdf |binary tests/testthat/test-dist_edr.R | 52 +++++++++++++++++++++++++++++++++++++++++ 7 files changed, 85 insertions(+), 26 deletions(-)
Title: High-Dimensional Mediation Analysis
Description: Allows to estimate and test high-dimensional mediation effects based on advanced mediator screening and penalized regression techniques. Methods used in the package refer to Zhang H, Zheng Y, Zhang Z, Gao T, Joyce B, Yoon G, Zhang W, Schwartz J, Just A, Colicino E, Vokonas P, Zhao L, Lv J, Baccarelli A, Hou L, Liu L. Estimating and Testing High-dimensional Mediation Effects in Epigenetic Studies. Bioinformatics. (2016) <doi:10.1093/bioinformatics/btw351>. PMID: 27357171.
Author: Yinan Zheng [aut, cre],
Haixiang Zhang [aut],
Lifang Hou [aut],
Lei Liu [aut, cph]
Maintainer: Yinan Zheng <y-zheng@northwestern.edu>
Diff between HIMA versions 2.2.0 dated 2023-04-27 and 2.2.1 dated 2023-09-10
HIMA-2.2.0/HIMA/R/example1.R |only HIMA-2.2.0/HIMA/R/example2.R |only HIMA-2.2.0/HIMA/R/example3.R |only HIMA-2.2.0/HIMA/R/example4.R |only HIMA-2.2.0/HIMA/data/Example1.rda |only HIMA-2.2.0/HIMA/data/Example2.rda |only HIMA-2.2.0/HIMA/data/Example3.rda |only HIMA-2.2.0/HIMA/data/Example4.rda |only HIMA-2.2.0/HIMA/inst/scripts/Example-1.R |only HIMA-2.2.0/HIMA/inst/scripts/Example-2.R |only HIMA-2.2.0/HIMA/inst/scripts/Example-3.R |only HIMA-2.2.0/HIMA/inst/scripts/Example-4.R |only HIMA-2.2.0/HIMA/man/Example1.Rd |only HIMA-2.2.0/HIMA/man/Example2.Rd |only HIMA-2.2.0/HIMA/man/Example3.Rd |only HIMA-2.2.0/HIMA/man/Example4.Rd |only HIMA-2.2.1/HIMA/DESCRIPTION | 18 - HIMA-2.2.1/HIMA/MD5 | 56 +-- HIMA-2.2.1/HIMA/NAMESPACE | 5 HIMA-2.2.1/HIMA/R/HIMA-package.R | 37 +- HIMA-2.2.1/HIMA/R/dblassoHIMA.R |only HIMA-2.2.1/HIMA/R/hima.R | 52 +-- HIMA-2.2.1/HIMA/R/hima2.R | 249 +++++++++----- HIMA-2.2.1/HIMA/R/himaDat.R |only HIMA-2.2.1/HIMA/R/microHIMA.R | 38 +- HIMA-2.2.1/HIMA/R/onAttach.R | 9 HIMA-2.2.1/HIMA/R/qHIMA.R |only HIMA-2.2.1/HIMA/R/survHIMA.R | 30 - HIMA-2.2.1/HIMA/R/utils.R | 4 HIMA-2.2.1/HIMA/README.md | 24 + HIMA-2.2.1/HIMA/data/himaDat.rda |only HIMA-2.2.1/HIMA/inst/NEWS | 4 HIMA-2.2.1/HIMA/inst/scripts/Example_data_generation.R |only HIMA-2.2.1/HIMA/man/HIMA-package.Rd | 34 +- HIMA-2.2.1/HIMA/man/dblassoHIMA.Rd |only HIMA-2.2.1/HIMA/man/hima.Rd | 32 + HIMA-2.2.1/HIMA/man/hima2.Rd | 288 +++++++++-------- HIMA-2.2.1/HIMA/man/himaDat.Rd |only HIMA-2.2.1/HIMA/man/microHIMA.Rd | 26 - HIMA-2.2.1/HIMA/man/qHIMA.Rd |only HIMA-2.2.1/HIMA/man/survHIMA.Rd | 20 - 41 files changed, 543 insertions(+), 383 deletions(-)
Title: Time-Dependent Sensitivity Analysis
Description: Functions that can be used to calculate time-dependent state and parameter sensitivities for both continuous- and discrete-time deterministic models. See Ng et al. (in press) <doi:10.1086/726143> for more information about time-dependent sensitivity analysis.
Author: Wee Hao Ng [aut, cre] ,
Christopher R. Myers [ctb] ,
Scott H. McArt [ctb] ,
Stephen P. Ellner [ctb]
Maintainer: Wee Hao Ng <wn68@cornell.edu>
Diff between tdsa versions 1.0-1 dated 2023-04-25 and 1.1-0 dated 2023-09-10
tdsa-1.0-1/tdsa/inst/doc/demo.R |only tdsa-1.0-1/tdsa/inst/doc/demo.Rmd |only tdsa-1.0-1/tdsa/inst/doc/demo.html |only tdsa-1.0-1/tdsa/vignettes/demo.Rmd |only tdsa-1.1-0/tdsa/DESCRIPTION | 34 +- tdsa-1.1-0/tdsa/MD5 | 45 ++ tdsa-1.1-0/tdsa/NEWS | 8 tdsa-1.1-0/tdsa/R/checks.R |only tdsa-1.1-0/tdsa/R/parm_sens.R | 266 ++++------------- tdsa-1.1-0/tdsa/R/state_sens.R | 290 ++++--------------- tdsa-1.1-0/tdsa/build/partial.rdb |binary tdsa-1.1-0/tdsa/build/tdsa.pdf |binary tdsa-1.1-0/tdsa/build/vignette.rds |binary tdsa-1.1-0/tdsa/inst/CITATION | 10 tdsa-1.1-0/tdsa/inst/doc/V01_theory.Rmd |only tdsa-1.1-0/tdsa/inst/doc/V01_theory.html |only tdsa-1.1-0/tdsa/inst/doc/V02_demo_translocation.R |only tdsa-1.1-0/tdsa/inst/doc/V02_demo_translocation.Rmd |only tdsa-1.1-0/tdsa/inst/doc/V02_demo_translocation.html |only tdsa-1.1-0/tdsa/inst/doc/V03_demo_spillover.R |only tdsa-1.1-0/tdsa/inst/doc/V03_demo_spillover.Rmd |only tdsa-1.1-0/tdsa/inst/doc/V03_demo_spillover.html |only tdsa-1.1-0/tdsa/inst/testdata |only tdsa-1.1-0/tdsa/inst/tinytest |only tdsa-1.1-0/tdsa/man/parm_sens.Rd | 6 tdsa-1.1-0/tdsa/man/state_sens.Rd | 8 tdsa-1.1-0/tdsa/tests |only tdsa-1.1-0/tdsa/vignettes/V01_theory.Rmd |only tdsa-1.1-0/tdsa/vignettes/V02_demo_translocation.Rmd |only tdsa-1.1-0/tdsa/vignettes/V03_demo_spillover.Rmd |only tdsa-1.1-0/tdsa/vignettes/conceptual_1.svg |only tdsa-1.1-0/tdsa/vignettes/conceptual_2.svg |only tdsa-1.1-0/tdsa/vignettes/flowchart2.svg |only 33 files changed, 209 insertions(+), 458 deletions(-)
Title: Test Data for the 'admiral' Package
Description: A set of Study Data Tabulation Model (SDTM) datasets from the Clinical
Data Interchange Standards Consortium (CDISC) pilot project used for testing
and developing Analysis Data Model (ADaM) derivations inside the 'admiral'
package.
Author: Ben Straub [aut, cre],
Stefan Bundfuss [aut],
Gordon Miller [aut],
Thomas Neitmann [aut],
Syed Mubasheer [aut],
Ross Farrugia [ctb],
Shan Lee [ctb],
Gopi Vegesna [ctb],
Sophie Shapcott [ctb],
Mahdi About [ctb],
Antonio Rodriguez [ctb],
Claudia Carluc [...truncated...]
Maintainer: Ben Straub <ben.x.straub@gsk.com>
Diff between admiral.test versions 0.6.0 dated 2023-06-07 and 0.7.0 dated 2023-09-10
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- NEWS.md | 4 ++++ R/zzz.R |only README.md | 2 ++ inst/WORDLIST | 1 + 6 files changed, 15 insertions(+), 7 deletions(-)
Title: R Interface to Brazilian Central Bank Web Services
Description: The Brazilian Central Bank API delivers many datasets which regard economic
activity, regional economy, international economy, public finances, credit
indicators and many more. For more information please see <http://dadosabertos.bcb.gov.br/>.
These datasets can be accessed through 'rbcb' functions and can be obtained in
different data structures common to R ('tibble', 'data.frame', 'xts', ...).
Author: Wilson Freitas <wilson.freitas@gmail.com>
Maintainer: Wilson Freitas <wilson.freitas@gmail.com>
Diff between rbcb versions 0.1.10 dated 2022-03-30 and 0.1.12 dated 2023-09-10
rbcb-0.1.10/rbcb/R/http_util.R |only rbcb-0.1.10/rbcb/R/rbcb.R |only rbcb-0.1.10/rbcb/R/rbcb_addin.R |only rbcb-0.1.10/rbcb/R/rbcb_get_market_expectations.R |only rbcb-0.1.10/rbcb/R/rbcb_olinda_get_currencies.R |only rbcb-0.1.10/rbcb/R/rbcb_url.R |only rbcb-0.1.10/rbcb/R/series_info.R |only rbcb-0.1.10/rbcb/R/series_obj.R |only rbcb-0.1.10/rbcb/man/get_institutions_market_expectations.Rd |only rbcb-0.1.10/rbcb/man/rbcb.Rd |only rbcb-0.1.10/rbcb/tests/testthat/test-12-months-inflation.R |only rbcb-0.1.10/rbcb/tests/testthat/test-focus-annual.R |only rbcb-0.1.10/rbcb/tests/testthat/test-focus-monthly.R |only rbcb-0.1.10/rbcb/tests/testthat/test-focus-quarterly.R |only rbcb-0.1.10/rbcb/tests/testthat/test-series_obj.R |only rbcb-0.1.10/rbcb/tests/testthat/test-url.R |only rbcb-0.1.12/rbcb/DESCRIPTION | 20 rbcb-0.1.12/rbcb/MD5 | 90 +-- rbcb-0.1.12/rbcb/NAMESPACE | 37 + rbcb-0.1.12/rbcb/NEWS.md | 11 rbcb-0.1.12/rbcb/R/addins.R |only rbcb-0.1.12/rbcb/R/currency_helpers.R | 8 rbcb-0.1.12/rbcb/R/datasets.R |only rbcb-0.1.12/rbcb/R/odata-expectativas.R |only rbcb-0.1.12/rbcb/R/odata_ptax.R |only rbcb-0.1.12/rbcb/R/rbcb-package.R |only rbcb-0.1.12/rbcb/R/rbcb_get.R |only rbcb-0.1.12/rbcb/R/rbcb_get_currencies.R | 78 +-- rbcb-0.1.12/rbcb/R/rbcb_get_series.R | 131 ----- rbcb-0.1.12/rbcb/R/sgs.R |only rbcb-0.1.12/rbcb/R/utils.R |only rbcb-0.1.12/rbcb/README.md | 244 +++++----- rbcb-0.1.12/rbcb/man/figures |only rbcb-0.1.12/rbcb/man/get_all_currencies.Rd | 46 - rbcb-0.1.12/rbcb/man/get_annual_market_expectations.Rd | 2 rbcb-0.1.12/rbcb/man/get_currency_cross_rates.Rd | 60 +- rbcb-0.1.12/rbcb/man/get_market_expectations.Rd | 17 rbcb-0.1.12/rbcb/man/get_monthly_market_expectations.Rd | 2 rbcb-0.1.12/rbcb/man/get_quarterly_market_expectations.Rd | 2 rbcb-0.1.12/rbcb/man/get_selic_market_expectations.Rd | 86 +-- rbcb-0.1.12/rbcb/man/get_series.Rd | 16 rbcb-0.1.12/rbcb/man/get_top5s_annual_market_expectations.Rd | 2 rbcb-0.1.12/rbcb/man/get_top5s_monthly_market_expectations.Rd | 2 rbcb-0.1.12/rbcb/man/get_top5s_selic_market_expectations.Rd | 86 +-- rbcb-0.1.12/rbcb/man/get_twelve_months_inflation_expectations.Rd | 2 rbcb-0.1.12/rbcb/man/helpers.Rd | 96 +-- rbcb-0.1.12/rbcb/man/list_currencies.Rd | 38 - rbcb-0.1.12/rbcb/man/olinda_get_currency.Rd | 106 ++-- rbcb-0.1.12/rbcb/man/olinda_list_currencies.Rd | 44 - rbcb-0.1.12/rbcb/man/rbcb-options.Rd |only rbcb-0.1.12/rbcb/man/rbcb-package.Rd |only rbcb-0.1.12/rbcb/man/rbcb_dataset.Rd | 40 - rbcb-0.1.12/rbcb/man/rbcb_get.Rd |only rbcb-0.1.12/rbcb/man/rbcb_search.Rd | 42 - rbcb-0.1.12/rbcb/man/sgs.Rd |only rbcb-0.1.12/rbcb/man/sgs_untidy.Rd |only rbcb-0.1.12/rbcb/tests/testthat/setup.R |only rbcb-0.1.12/rbcb/tests/testthat/test-currencies.R | 65 ++ rbcb-0.1.12/rbcb/tests/testthat/test-datasets.R |only rbcb-0.1.12/rbcb/tests/testthat/test-get_series.R | 92 ++- rbcb-0.1.12/rbcb/tests/testthat/test-odata-expectativas.R |only rbcb-0.1.12/rbcb/tests/testthat/test-odata-ptax.R |only rbcb-0.1.12/rbcb/tests/testthat/test-sgs.R |only rbcb-0.1.12/rbcb/tests/testthat/test-utils.R |only 64 files changed, 744 insertions(+), 721 deletions(-)
Title: Quadratic Root for any Quadratic Equation
Description: It will assist the user to find simple quadratic roots from any quadratic equation.
Author: Pankaj Das [aut, cre]
Maintainer: Pankaj Das <pankaj.das2@icar.gov.in>
Diff between QuadRoot versions 0.2.0 dated 2021-09-10 and 0.2.1 dated 2023-09-10
QuadRoot-0.2.0/QuadRoot/R/QuadRoot.R |only QuadRoot-0.2.0/QuadRoot/man/QuadRoot.Rd |only QuadRoot-0.2.1/QuadRoot/DESCRIPTION | 15 ++++++++++----- QuadRoot-0.2.1/QuadRoot/MD5 | 15 +++++++++++---- QuadRoot-0.2.1/QuadRoot/NAMESPACE | 2 ++ QuadRoot-0.2.1/QuadRoot/R/QuadrRoot.R |only QuadRoot-0.2.1/QuadRoot/build |only QuadRoot-0.2.1/QuadRoot/inst |only QuadRoot-0.2.1/QuadRoot/man/QuadraticRoot.Rd |only QuadRoot-0.2.1/QuadRoot/tests |only QuadRoot-0.2.1/QuadRoot/vignettes |only 11 files changed, 23 insertions(+), 9 deletions(-)
Title: Decipher Microbial Turnover along a Gradient
Description: Two pipelines are provided to study microbial turnover along a gradient, including the beta diversity and microbial abundance change. The 'betaturn' class consists of the steps of community dissimilarity matrix generation, matrix conversion, differential test and visualization. The workflow of 'taxaturn' class includes the taxonomic abundance calculation, abundance transformation, abundance change summary, statistical analysis and visualization. Multiple statistical approaches can contribute to the analysis of microbial turnover.
Author: Chi Liu [aut, cre],
Xiangzhen Li [ctb],
Minjie Yao [ctb]
Maintainer: Chi Liu <liuchi0426@126.com>
Diff between mecoturn versions 0.2.0 dated 2023-06-01 and 0.3.0 dated 2023-09-10
DESCRIPTION | 11 ++++++----- MD5 | 12 ++++++------ NAMESPACE | 4 ++++ R/import.R | 4 ++++ R/taxaturn.R | 9 ++++++--- data/wheat_16S.RData |binary man/taxaturn.Rd | 4 ++-- 7 files changed, 28 insertions(+), 16 deletions(-)
Title: Uniform Manifold Samplers for Topological Data Analysis
Description: Uniform random samples from simple manifolds, sometimes with noise,
are commonly used to test topological data analytic (TDA) tools.
This package includes samplers powered by two techniques: analytic
volume-preserving parameterizations, as employed by Arvo (1995)
<doi:10.1145/218380.218500>, and rejection sampling, as employed by
Diaconis, Holmes, and Shahshahani (2013) <doi:10.1214/12-IMSCOLL1006>.
Author: Jason Cory Brunson [aut, cre],
Brandon Demkowicz [aut],
Sanmati Choudhary [aut]
Maintainer: Jason Cory Brunson <cornelioid@gmail.com>
Diff between tdaunif versions 0.1.0 dated 2020-10-26 and 0.1.1 dated 2023-09-10
DESCRIPTION | 13 - MD5 | 54 ++-- NEWS.md | 9 R/archimedean-spirals.r | 8 R/circles.r | 2 R/disks.r | 4 R/ellipses.r | 2 R/lemniscates.r | 2 R/sphere.r | 2 R/tdaunif.r | 1 R/tori.r | 3 R/triangles.r | 6 README.md | 31 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/tdaunif.html | 369 ++++++++++++++++++++++----------- inst/doc/tdaunif.rmd | 2 inst/examples/ex-archimedean-spirals.r | 2 inst/examples/ex-tori.r | 4 man/arch-spirals.Rd | 6 man/circles.Rd | 2 man/disks.Rd | 2 man/ellipses.Rd | 2 man/sphere.Rd | 2 man/tdaunif.Rd | 1 man/tori.Rd | 4 man/triangles.Rd | 2 vignettes/tdaunif.rmd | 2 28 files changed, 347 insertions(+), 190 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of
use. Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions. Various
matrix decompositions are provided through optional integration with
LAPACK and ATLAS libraries. The 'RcppArmadillo' package includes the
header files from the templated 'Armadillo' library. Thus users do
not need to install 'Armadillo' itself in order to use
'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is licensed
under Apache License 2; previous releases were under licensed as MPL
2.0 from version 3.800.0 onwards and LGPL-3 prior to that;
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed
under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Dirk Eddelbuettel, Romain Francois, Doug Bates, Binxiang Ni, and Conrad Sanderson
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.12.6.3.0 dated 2023-08-29 and 0.12.6.4.0 dated 2023-09-10
ChangeLog | 11 + DESCRIPTION | 8 - MD5 | 38 +++--- configure | 18 +-- configure.ac | 2 inst/NEWS.Rd | 12 ++ inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-sparseMatrix.pdf |binary inst/include/armadillo_bits/arma_version.hpp | 2 inst/include/armadillo_bits/auxlib_bones.hpp | 9 + inst/include/armadillo_bits/auxlib_meat.hpp | 130 ++++++++++++++++++++--- inst/include/armadillo_bits/compiler_setup.hpp | 6 - inst/include/armadillo_bits/op_det_bones.hpp | 4 inst/include/armadillo_bits/op_det_meat.hpp | 76 ------------- inst/include/armadillo_bits/op_inv_gen_bones.hpp | 13 +- inst/include/armadillo_bits/op_inv_gen_meat.hpp | 85 +-------------- inst/include/armadillo_bits/op_inv_spd_bones.hpp | 6 - inst/include/armadillo_bits/op_inv_spd_meat.hpp | 87 --------------- inst/include/armadillo_bits/traits.hpp | 12 ++ inst/include/armadillo_bits/translate_blas.hpp | 2 20 files changed, 218 insertions(+), 303 deletions(-)
Title: R Interface to MPI for HPC Clusters (Programming with Big Data
Project)
Description: A simplified, efficient, interface to MPI for HPC clusters. It is
a derivation and rethinking of the Rmpi package. pbdMPI embraces the
prevalent parallel programming style on HPC clusters. Beyond the
interface, a collection of functions for global work with
distributed data and resource-independent RNG reproducibility is
included. It is based on S4 classes and methods.
Author: Wei-Chen Chen [aut, cre],
George Ostrouchov [aut],
Drew Schmidt [aut],
Pragneshkumar Patel [aut],
Hao Yu [aut],
Christian Heckendorf [ctb] ,
Brian Ripley [ctb] ,
R Core team [ctb] ,
Sebastien Lamy de la Chapelle [aut]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdMPI versions 0.4-6 dated 2022-10-25 and 0.5-0 dated 2023-09-10
pbdMPI-0.4-6/pbdMPI/R/util_execmpi.r |only pbdMPI-0.4-6/pbdMPI/demo/seed.r |only pbdMPI-0.5-0/pbdMPI/ChangeLog | 37 pbdMPI-0.5-0/pbdMPI/DESCRIPTION | 32 pbdMPI-0.5-0/pbdMPI/INSTALL | 67 pbdMPI-0.5-0/pbdMPI/MD5 | 303 pbdMPI-0.5-0/pbdMPI/NAMESPACE | 6 pbdMPI-0.5-0/pbdMPI/R/222_export_env.r | 7 pbdMPI-0.5-0/pbdMPI/R/api_task_pull.r | 38 pbdMPI-0.5-0/pbdMPI/R/comm_balance.r | 3 pbdMPI-0.5-0/pbdMPI/R/comm_chunk.R | 145 pbdMPI-0.5-0/pbdMPI/R/comm_seed.r | 392 - pbdMPI-0.5-0/pbdMPI/R/spmd_allgatherv.r | 11 pbdMPI-0.5-0/pbdMPI/R/spmd_allgatherv_obj.r | 17 pbdMPI-0.5-0/pbdMPI/R/spmd_allreduce.r | 7 pbdMPI-0.5-0/pbdMPI/R/spmd_allreduce_obj.r | 22 pbdMPI-0.5-0/pbdMPI/R/spmd_communicator.r | 40 pbdMPI-0.5-0/pbdMPI/R/spmd_recv.r | 2 pbdMPI-0.5-0/pbdMPI/R/util_execmpi.r.in |only pbdMPI-0.5-0/pbdMPI/R/windows/util_execmpi.r |only pbdMPI-0.5-0/pbdMPI/R/windows/zzz.r | 39 pbdMPI-0.5-0/pbdMPI/R/zzz.r.in | 24 pbdMPI-0.5-0/pbdMPI/README.md | 193 pbdMPI-0.5-0/pbdMPI/configure | 3107 +++++----- pbdMPI-0.5-0/pbdMPI/configure.ac | 1 pbdMPI-0.5-0/pbdMPI/demo/00Index | 4 pbdMPI-0.5-0/pbdMPI/demo/allgather.r | 3 pbdMPI-0.5-0/pbdMPI/demo/allreduce.r | 3 pbdMPI-0.5-0/pbdMPI/demo/alltoall.r | 3 pbdMPI-0.5-0/pbdMPI/demo/any_all.r | 3 pbdMPI-0.5-0/pbdMPI/demo/bcast.r | 3 pbdMPI-0.5-0/pbdMPI/demo/bcast_msg.r | 3 pbdMPI-0.5-0/pbdMPI/demo/chunk.r |only pbdMPI-0.5-0/pbdMPI/demo/divide.r | 3 pbdMPI-0.5-0/pbdMPI/demo/gather.r | 3 pbdMPI-0.5-0/pbdMPI/demo/new_allgather.r | 1 pbdMPI-0.5-0/pbdMPI/demo/new_allreduce.r | 1 pbdMPI-0.5-0/pbdMPI/demo/pbdApply.r | 3 pbdMPI-0.5-0/pbdMPI/demo/pbdLapply.r | 3 pbdMPI-0.5-0/pbdMPI/demo/reduce.r | 3 pbdMPI-0.5-0/pbdMPI/demo/scatter.r | 5 pbdMPI-0.5-0/pbdMPI/demo/seed_rank.r |only pbdMPI-0.5-0/pbdMPI/demo/seed_vec.r |only pbdMPI-0.5-0/pbdMPI/demo/simple_balance.r | 2 pbdMPI-0.5-0/pbdMPI/demo/simple_io.r | 2 pbdMPI-0.5-0/pbdMPI/demo/simple_pairs.r | 2 pbdMPI-0.5-0/pbdMPI/demo/sort.r | 3 pbdMPI-0.5-0/pbdMPI/demo/task_pull.r | 2 pbdMPI-0.5-0/pbdMPI/inst/CITATION | 32 pbdMPI-0.5-0/pbdMPI/inst/c_combine_r/a.r | 4 pbdMPI-0.5-0/pbdMPI/inst/doc/pbdMPI-guide.pdf |binary pbdMPI-0.5-0/pbdMPI/inst/examples/test_cs/README | 4 pbdMPI-0.5-0/pbdMPI/inst/examples/test_cs/named.client.r | 3 pbdMPI-0.5-0/pbdMPI/inst/examples/test_cs/named.server.r | 3 pbdMPI-0.5-0/pbdMPI/inst/examples/test_cs/simple.client.r | 3 pbdMPI-0.5-0/pbdMPI/inst/examples/test_cs/simple.server.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_long_vector/allgather.r | 5 pbdMPI-0.5-0/pbdMPI/inst/examples/test_long_vector/allreduce.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_long_vector/bcast.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_long_vector/gather.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_long_vector/reduce.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_long_vector/scatter.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_long_vector/send_recv.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_parallel/01_mclapply_spmd.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_parallel/02_parMM_par.r | 4 pbdMPI-0.5-0/pbdMPI/inst/examples/test_parallel/02_parMM_spmd.r | 3 pbdMPI-0.5-0/pbdMPI/inst/examples/test_parallel/03_boot_par.r | 2 pbdMPI-0.5-0/pbdMPI/inst/examples/test_parallel/03_boot_spmd.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_parallel/04_glm_par.r | 2 pbdMPI-0.5-0/pbdMPI/inst/examples/test_parallel/04_glm_spmd.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_performance/demo_allgather_spmd.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_performance/demo_scatter_spmd.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_rmpi/allgather_spmd.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_rmpi/allgatherv_spmd.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_rmpi/allreduce_spmd.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_rmpi/bcast_spmd.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_rmpi/gather_spmd.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_rmpi/reduce_spmd.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_rmpi/scatter_spmd.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_rmpi/scatterv_spmd.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_rmpi/sendrecv_spmd.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_s4/01_simple.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_s4/02_mean.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_send_recv/01_basic.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_send_recv/02_basic_no_check_type.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_send_recv/02_lazy.r | 3 pbdMPI-0.5-0/pbdMPI/inst/examples/test_send_recv/03_lazy.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_spmd/allgather.r | 5 pbdMPI-0.5-0/pbdMPI/inst/examples/test_spmd/allreduce.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_spmd/bcast.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_spmd/gather.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_spmd/isend_irecv_wait.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_spmd/reduce.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_spmd/replace.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_spmd/scatter.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_spmd/send_recv.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_spmd/sendrecv.r | 1 pbdMPI-0.5-0/pbdMPI/inst/examples/test_spmd/sendrecv_replace.r | 1 pbdMPI-0.5-0/pbdMPI/inst/tests/allgather.r | 1 pbdMPI-0.5-0/pbdMPI/inst/tests/allreduce.r | 1 pbdMPI-0.5-0/pbdMPI/inst/tests/barrier.r | 1 pbdMPI-0.5-0/pbdMPI/inst/tests/bcast.r | 1 pbdMPI-0.5-0/pbdMPI/inst/tests/gather.r | 1 pbdMPI-0.5-0/pbdMPI/inst/tests/mpi_comm_ptr.r | 1 pbdMPI-0.5-0/pbdMPI/inst/tests/reduce.r | 1 pbdMPI-0.5-0/pbdMPI/man/00_pbdMPI-package.Rd | 101 pbdMPI-0.5-0/pbdMPI/man/11_d_control.Rd | 77 pbdMPI-0.5-0/pbdMPI/man/11_d_pbd_opt.Rd | 3 pbdMPI-0.5-0/pbdMPI/man/aa_allgather-method.Rd | 85 pbdMPI-0.5-0/pbdMPI/man/aa_allreduce-method.Rd | 44 pbdMPI-0.5-0/pbdMPI/man/aa_bcast-method.Rd | 14 pbdMPI-0.5-0/pbdMPI/man/aa_gather-method.Rd | 77 pbdMPI-0.5-0/pbdMPI/man/aa_reduce-method.Rd | 12 pbdMPI-0.5-0/pbdMPI/man/aa_scatter-method.Rd | 3 pbdMPI-0.5-0/pbdMPI/man/ab_recv-method.Rd | 3 pbdMPI-0.5-0/pbdMPI/man/ab_send-method.Rd | 3 pbdMPI-0.5-0/pbdMPI/man/ac_irecv-method.Rd | 3 pbdMPI-0.5-0/pbdMPI/man/ac_isend-method.Rd | 3 pbdMPI-0.5-0/pbdMPI/man/ad_sendrecv-method.Rd | 3 pbdMPI-0.5-0/pbdMPI/man/ad_sendrecv.replace-method.Rd | 3 pbdMPI-0.5-0/pbdMPI/man/ae_alltoall.Rd | 3 pbdMPI-0.5-0/pbdMPI/man/cc_arrange.mpi.apts.Rd | 8 pbdMPI-0.5-0/pbdMPI/man/cc_comm.Rd | 5 pbdMPI-0.5-0/pbdMPI/man/cc_comm.chunk.Rd | 82 pbdMPI-0.5-0/pbdMPI/man/dd_info.Rd | 5 pbdMPI-0.5-0/pbdMPI/man/dd_is.comm.null.Rd | 3 pbdMPI-0.5-0/pbdMPI/man/dd_sourcetag.Rd | 3 pbdMPI-0.5-0/pbdMPI/man/dd_wait.Rd | 3 pbdMPI-0.5-0/pbdMPI/man/uu_execmpi.Rd | 15 pbdMPI-0.5-0/pbdMPI/man/vv_get_jid.Rd | 9 pbdMPI-0.5-0/pbdMPI/man/vv_print_cat.Rd | 3 pbdMPI-0.5-0/pbdMPI/man/vv_seed.Rd | 205 pbdMPI-0.5-0/pbdMPI/man/ww_comm_as_gbd.Rd | 3 pbdMPI-0.5-0/pbdMPI/man/ww_comm_balance.Rd | 2 pbdMPI-0.5-0/pbdMPI/man/ww_comm_read.Rd | 2 pbdMPI-0.5-0/pbdMPI/man/ww_comm_write.Rd | 3 pbdMPI-0.5-0/pbdMPI/man/xx_comm_allpairs.Rd | 3 pbdMPI-0.5-0/pbdMPI/man/xx_comm_any_all.Rd | 3 pbdMPI-0.5-0/pbdMPI/man/xx_comm_base.Rd | 4 pbdMPI-0.5-0/pbdMPI/man/xx_comm_dist.Rd | 3 pbdMPI-0.5-0/pbdMPI/man/xx_comm_pairwise.Rd | 3 pbdMPI-0.5-0/pbdMPI/man/xx_comm_range.Rd | 4 pbdMPI-0.5-0/pbdMPI/man/xx_comm_sort.Rd | 4 pbdMPI-0.5-0/pbdMPI/man/xx_comm_stop_warning.Rd | 4 pbdMPI-0.5-0/pbdMPI/man/xx_comm_which.Rd | 4 pbdMPI-0.5-0/pbdMPI/man/yy_api_apply.Rd | 44 pbdMPI-0.5-0/pbdMPI/man/yy_api_task_pull.Rd | 40 pbdMPI-0.5-0/pbdMPI/man/yy_pkg_tools.Rd | 5 pbdMPI-0.5-0/pbdMPI/man/zz_spmd_internal.Rd | 2 pbdMPI-0.5-0/pbdMPI/src/Makevars.win | 2 pbdMPI-0.5-0/pbdMPI/src/spmd.h | 2 pbdMPI-0.5-0/pbdMPI/src/spmd_communicator.c | 12 pbdMPI-0.5-0/pbdMPI/src/zzz.c | 2 pbdMPI-0.5-0/pbdMPI/vignettes/build_pdf.sh | 3 pbdMPI-0.5-0/pbdMPI/vignettes/pbdMPI-include/01-introduction.tex | 25 pbdMPI-0.5-0/pbdMPI/vignettes/pbdMPI-include/03-faq.tex | 22 156 files changed, 3121 insertions(+), 2522 deletions(-)
Title: Cluster-Based Permutation Analysis for Densely Sampled Time Data
Description: An implementation of fast cluster-based permutation analysis
(CPA) for densely-sampled time data developed in Maris & Oostenveld,
2007 <doi:10.1016/j.jneumeth.2007.03.024>. Supports (generalized,
mixed-effects) regression models for the calculation of timewise
statistics. Provides both a wholesale and a piecemeal interface to the
CPA procedure with an emphasis on interpretability and diagnostics.
Integrates 'Julia' libraries 'MixedModels.jl' and 'GLM.jl' for
performance improvements, with additional functionalities for
interfacing with 'Julia' from 'R' powered by the 'JuliaConnectoR'
package.
Author: June Choe [aut, cre, cph]
Maintainer: June Choe <jchoe001@gmail.com>
Diff between jlmerclusterperm versions 1.0.4 dated 2023-09-06 and 1.0.5 dated 2023-09-10
DESCRIPTION | 9 - MD5 | 22 ++-- NAMESPACE | 94 +++++++++--------- NEWS.md | 2 R/aaa.R | 23 ++-- R/calculate_pvalue.R | 222 +++++++++++++++++++++---------------------- R/interop-utils.R | 126 ++++++++++++------------ R/jlmerclusterperm-package.R | 38 ++++--- README.md | 6 - inst/julia/Project.toml | 4 man/reexports.Rd | 5 tests/testthat/test-aaa.R | 6 - 12 files changed, 293 insertions(+), 264 deletions(-)
More information about jlmerclusterperm at CRAN
Permanent link
Title: Utilities for 'Glmnet'
Description: Provides a formula interface for the 'glmnet' package for
elasticnet regression, a method for cross-validating the alpha parameter,
and other quality-of-life tools.
Author: Microsoft [cph],
Hong Ooi [aut, cre]
Maintainer: Hong Ooi <hongooi73@gmail.com>
Diff between glmnetUtils versions 1.1.8 dated 2021-02-25 and 1.1.9 dated 2023-09-10
DESCRIPTION | 6 MD5 | 16 + NEWS.md | 4 build/vignette.rds |binary inst/doc/intro.R | 24 -- inst/doc/intro.html | 438 +++++++++++++++++++++++++++++++++++----------------- inst/doc/intro.rmd | 46 +++-- vignettes/figures |only vignettes/intro.rmd | 46 +++-- 9 files changed, 369 insertions(+), 211 deletions(-)
Title: Estimation of the Extremal Index
Description: Performs frequentist inference for the extremal index of a
stationary time series. Two types of methodology are used. One type is
based on a model that relates the distribution of block maxima to the
marginal distribution of series and leads to the semiparametric maxima
estimators described in Northrop (2015) <doi:10.1007/s10687-015-0221-5> and
Berghaus and Bucher (2018) <doi:10.1214/17-AOS1621>. Sliding block maxima
are used to increase precision of estimation. A graphical block size
diagnostic is provided. The other type of methodology uses a model for the
distribution of threshold inter-exceedance times (Ferro and Segers (2003)
<doi:10.1111/1467-9868.00401>). Three versions of this type of approach are
provided: the iterated weight least squares approach of Suveges (2007)
<doi:10.1007/s10687-007-0034-2>, the K-gaps model of
Suveges and Davison (2010) <doi:10.1214/09-AOAS292> and a similar approach
of Holesovsky and Fusek (2020) <doi:10.1007/s1068 [...truncated...]
Author: Paul J. Northrop [aut, cre, cph],
Constantinos Christodoulides [aut, cph]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>
Diff between exdex versions 1.2.1 dated 2022-04-16 and 1.2.2 dated 2023-09-10
exdex-1.2.1/exdex/R/exdex.R |only exdex-1.2.1/exdex/man/exdex.Rd |only exdex-1.2.2/exdex/DESCRIPTION | 12 exdex-1.2.2/exdex/MD5 | 54 exdex-1.2.2/exdex/NEWS.md | 106 - exdex-1.2.2/exdex/R/RcppExports.R | 2 exdex-1.2.2/exdex/R/choose_uD.R | 690 ++++----- exdex-1.2.2/exdex/R/choose_uk.R | 690 ++++----- exdex-1.2.2/exdex/R/confidence_intervals.R | 1802 ++++++++++++------------- exdex-1.2.2/exdex/R/exdex-package.R |only exdex-1.2.2/exdex/R/kgaps.R | 609 ++++---- exdex-1.2.2/exdex/README.md | 40 exdex-1.2.2/exdex/build/partial.rdb |binary exdex-1.2.2/exdex/build/vignette.rds |binary exdex-1.2.2/exdex/inst/doc/exdex-vignette.Rmd | 8 exdex-1.2.2/exdex/inst/doc/exdex-vignette.html | 430 +++++ exdex-1.2.2/exdex/man/cheeseboro.Rd | 2 exdex-1.2.2/exdex/man/exdex-package.Rd |only exdex-1.2.2/exdex/man/kgaps.Rd | 3 exdex-1.2.2/exdex/man/kgaps_confint.Rd | 7 exdex-1.2.2/exdex/man/newlyn.Rd | 2 exdex-1.2.2/exdex/man/plot.choose_ud.Rd | 2 exdex-1.2.2/exdex/man/plot.choose_uk.Rd | 2 exdex-1.2.2/exdex/man/sp500.Rd | 2 exdex-1.2.2/exdex/man/uccle.Rd | 2 exdex-1.2.2/exdex/man/uccle720.Rd | 2 exdex-1.2.2/exdex/man/uccle720m.Rd | 2 exdex-1.2.2/exdex/src/Makevars | 1 exdex-1.2.2/exdex/src/Makevars.win | 1 exdex-1.2.2/exdex/vignettes/exdex-vignette.Rmd | 8 30 files changed, 2429 insertions(+), 2050 deletions(-)
Title: Bayes Screening and Model Discrimination
Description: Bayes screening and model discrimination follow-up designs.
Author: Ernesto Barrios based on Daniel Meyer's code.
Maintainer: Ernesto Barrios <ebarrios@itam.mx>
Diff between BsMD versions 2023.707 dated 2023-07-07 and 2023.915 dated 2023-09-10
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- inst/doc/BsMD.pdf |binary man/BsMD-package.Rd | 4 ++-- 4 files changed, 9 insertions(+), 9 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-06-21 0.3.0
2023-02-23 0.2.0
2022-06-21 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-09-06 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-04-25 1.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-09-07 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-24 0.1.4
Title: Easily Apply Formats to Data
Description: Contains a set of functions that can be used to apply
formats to data frames or vectors. The package aims to provide to
functionality similar to that of SAS® formats. Formats are assigned to
the format attribute on data frame columns. Then when the fdata()
function is called, a new data frame is created with the column data
formatted as specified. The package also contains a value() function
to create a user-defined format, similar to a SAS® user-defined format.
Author: David Bosak
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between fmtr versions 1.5.9 dated 2022-09-08 and 1.6.0 dated 2023-09-10
DESCRIPTION | 8 MD5 | 26 - NEWS.md | 5 R/fmtr.R | 2 build/vignette.rds |binary inst/doc/fmtr-convenience.html | 18 inst/doc/fmtr-example1.html | 486 +++++++++++---------- inst/doc/fmtr-fapply.html | 328 +++++++------- inst/doc/fmtr-faq.html | 910 ++++++++++++++++++++--------------------- inst/doc/fmtr-fcat.html | 186 ++++---- inst/doc/fmtr-fdata.html | 152 +++--- inst/doc/fmtr-helpers.html | 18 inst/doc/fmtr.html | 444 ++++++++++---------- man/fmtr.Rd | 2 14 files changed, 1315 insertions(+), 1270 deletions(-)
Title: Bayesian Analysis of Computer Code Output (BACCO)
Description: The BACCO bundle of packages is replaced by the BACCO
package, which provides a vignette that illustrates the constituent
packages (emulator, approximator, calibrator) in use.
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between BACCO versions 2.0-9 dated 2013-12-12 and 2.1-0 dated 2023-09-10
DESCRIPTION | 9 ++++----- MD5 | 11 ++++++----- build/partial.rdb |only build/vignette.rds |binary inst/CITATION | 8 +++----- inst/doc/both_papers.pdf |binary man/BACCO-package.Rd | 19 +++++++++---------- 7 files changed, 22 insertions(+), 25 deletions(-)
Title: Multi-Armed Qini
Description: Evaluate treatment rules for costly and mutually exclusive treatment arms with Qini curves as proposed in Sverdrup, Wu, Athey, and Wager (2023) <arXiv:2306.11979>.
Author: Erik Sverdrup [aut, cre],
Han Wu [aut],
Susan Athey [aut],
Stefan Wager [aut]
Maintainer: Erik Sverdrup <erikcs@stanford.edu>
Diff between maq versions 0.2.0 dated 2023-09-03 and 0.3.0 dated 2023-09-10
DESCRIPTION | 6 - MD5 | 20 ++- NAMESPACE | 1 R/maq.R | 225 ++++++++++++++++++++----------------------- R/plot.R |only R/print.R |only R/summary.R |only man/integrated_difference.Rd |only man/maq.Rd | 42 ++++---- man/plot.maq.Rd | 2 man/predict.maq.Rd | 9 + man/print.maq.Rd | 2 man/summary.maq.Rd | 2 13 files changed, 153 insertions(+), 156 deletions(-)
Title: Internet Memes for Data Analysts
Description: Generates internet memes that optionally include a superimposed inset plot and other atypical features,
combining the visual impact of an attention-grabbing meme with graphic results of data analysis.
The package differs from related packages that focus on imitating and reproducing standard memes.
Some packages do this by interfacing with online meme generators whereas others achieve this natively.
This package takes the latter approach. It does not interface with online meme generators or require any authentication with external websites.
It reads images directly from local files or via URL and meme generation is done by the package.
While this is similar to the 'meme' package available on CRAN, it differs in that the focus is on
allowing for non-standard meme layouts and hybrids of memes mixed with graphs.
While this package can be used to make basic memes like an online meme generator would produce,
it caters primarily to hybrid graph-meme plots where the meme presentation can be se [...truncated...]
Author: Matthew Leonawicz [aut, cre]
Maintainer: Matthew Leonawicz <mfleonawicz@gmail.com>
Diff between memery versions 0.5.6 dated 2021-02-14 and 0.5.7 dated 2023-09-10
DESCRIPTION | 11 - MD5 | 24 +- NAMESPACE | 3 NEWS.md | 4 R/memery.R | 3 inst/WORDLIST | 4 man/car_shiny.Rd | 124 +++++++------- man/inset.Rd | 168 +++++++++---------- man/meme.Rd | 444 +++++++++++++++++++++++++-------------------------- man/memeApp.Rd | 68 +++---- man/memery.Rd | 61 +++---- man/memetheme.Rd | 42 ++-- man/text_position.Rd | 54 +++--- 13 files changed, 507 insertions(+), 503 deletions(-)
Title: LCARS Aesthetic for Shiny
Description: Provides Shiny widgets and theme that support a 'Library Computer Access/Retrieval System' (LCARS) aesthetic for Shiny apps.
The package also includes functions for adding a minimal LCARS theme to static 'ggplot2' graphs.
More details about LCARS can be found at <https://en.wikipedia.org/wiki/LCARS>.
Author: Matthew Leonawicz [aut, cre]
Maintainer: Matthew Leonawicz <mfleonawicz@gmail.com>
Diff between lcars versions 0.3.7 dated 2021-06-01 and 0.3.8 dated 2023-09-10
DESCRIPTION | 16 - MD5 | 54 +++--- NEWS.md | 6 R/lcars.R | 1 README.md | 54 +----- build/vignette.rds |binary inst/WORDLIST | 9 - inst/doc/lcars.html | 459 ++++++++++++++++++++++++++++----------------------- man/inputColumn.Rd | 50 ++--- man/lcars.Rd | 33 +-- man/lcarsBox.Rd | 446 ++++++++++++++++++++++++------------------------- man/lcarsBracket.Rd | 120 ++++++------- man/lcarsButton.Rd | 90 +++++----- man/lcarsCheckbox.Rd | 114 ++++++------ man/lcarsHeader.Rd | 246 +++++++++++++-------------- man/lcarsOutput.Rd | 86 ++++----- man/lcarsPage.Rd | 138 +++++++-------- man/lcarsRadio.Rd | 250 +++++++++++++-------------- man/lcarsRect.Rd | 226 ++++++++++++------------- man/lcarsSweep.Rd | 228 ++++++++++++------------- man/lcarsToggle.Rd | 172 +++++++++---------- man/lcarsWell.Rd | 52 ++--- man/lcars_border.Rd | 228 ++++++++++++------------- man/lcars_elbow.Rd | 126 +++++++------- man/lcars_pill.Rd | 202 +++++++++++----------- man/lcars_rect.Rd | 60 +++--- man/renderLcars.Rd | 98 +++++----- man/theme_lcars.Rd | 68 +++---- 28 files changed, 1831 insertions(+), 1801 deletions(-)