Sat, 21 Oct 2023

Package priceR updated to version 1.0.1 with previous version 1.0.0 dated 2023-10-03

Title: Economics and Pricing Tools
Description: Functions to aid in micro and macro economic analysis and handling of price and currency data. Includes extraction of relevant inflation and exchange rate data from World Bank API, data cleaning/parsing, and standardisation. Inflation adjustment calculations as found in Principles of Macroeconomics by Gregory Mankiw et al (2014). Current and historical end of day exchange rates for 171 currencies from the European Central Bank Statistical Data Warehouse (2020) <https://sdw.ecb.europa.eu/curConverter.do>.
Author: Steve Condylios [aut, cre], Bruno Mioto [ctb], Bryan Shalloway [ctb]
Maintainer: Steve Condylios <steve.condylios@gmail.com>

Diff between priceR versions 1.0.0 dated 2023-10-03 and 1.0.1 dated 2023-10-21

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Package usmap updated to version 0.6.3 with previous version 0.6.2 dated 2023-06-13

Title: US Maps Including Alaska and Hawaii
Description: Obtain United States map data frames of varying region types (e.g. county, state). The map data frames include Alaska and Hawaii conveniently placed to the bottom left, as they appear in most maps of the US. Convenience functions for plotting choropleths and working with FIPS codes are also provided.
Author: Paolo Di Lorenzo [aut, cre]
Maintainer: Paolo Di Lorenzo <dilorenzo@hey.com>

Diff between usmap versions 0.6.2 dated 2023-06-13 and 0.6.3 dated 2023-10-21

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Package spatstat.random updated to version 3.2-1 with previous version 3.1-6 dated 2023-09-09

Title: Random Generation Functionality for the 'spatstat' Family
Description: Functionality for random generation of spatial data in the 'spatstat' family of packages. Generates random spatial patterns of points according to many simple rules (complete spatial randomness, Poisson, binomial, random grid, systematic, cell), randomised alteration of patterns (thinning, random shift, jittering), simulated realisations of random point processes including simple sequential inhibition, Matern inhibition models, Neyman-Scott cluster processes (using direct, Brix-Kendall, or hybrid algorithms), log-Gaussian Cox processes, product shot noise cluster processes and Gibbs point processes (using Metropolis-Hastings birth-death-shift algorithm, alternating Gibbs sampler, or coupling-from-the-past perfect simulation). Also generates random spatial patterns of line segments, random tessellations, and random images (random noise, random mosaics). Excludes random generation on a linear network, which is covered by the separate package 'spatstat.linnet'.
Author: Adrian Baddeley [aut, cre, cph] , Rolf Turner [aut, cph] , Ege Rubak [aut, cph] , Tilman Davies [aut, cph] , Kasper Klitgaard Berthelsen [ctb, cph], David Bryant [ctb, cph], Ya-Mei Chang [ctb, cph], Ute Hahn [ctb], Abdollah Jalilian [ctb], Dominic Sc [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>

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Package secsse updated to version 3.0.2 with previous version 2.6.0 dated 2023-07-06

Title: Several Examined and Concealed States-Dependent Speciation and Extinction
Description: Simultaneously infers state-dependent diversification across two or more states of a single or multiple traits while accounting for the role of a possible concealed trait. See Herrera-Alsina et al. (2019) <doi:10.1093/sysbio/syy057>.
Author: Leonel Herrera Alsina [aut] , Paul van Els [aut] , Thijs Janzen [ctb] , Hanno Hildenbrandt [ctb] , Pedro Santos Neves [ctb] , Rampal S. Etienne [cre, aut]
Maintainer: Rampal S. Etienne <r.s.etienne@rug.nl>

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New package Rlibkdv with initial version 1.1
Package: Rlibkdv
Title: A Versatile Kernel Density Visualization Library for Geospatial Analytics (Heatmap)
Version: 1.1
Maintainer: Bojian Zhu <bjzhu999@gmail.com>
Description: Unlock the power of large-scale geospatial analysis, quickly generate high-resolution kernel density visualizations, supporting advanced analysis tasks such as bandwidth-tuning and spatiotemporal analysis. Regardless of the size of your dataset, our library delivers efficient and accurate results. Tsz Nam Chan, Leong Hou U, Byron Choi, Jianliang Xu, Reynold Cheng (2023) <doi:10.1145/3555041.3589401>. Tsz Nam Chan, Rui Zang, Pak Lon Ip, Leong Hou U, Jianliang Xu (2023) <doi:10.1145/3555041.3589711>. Tsz Nam Chan, Leong Hou U, Byron Choi, Jianliang Xu (2022) <doi:10.1145/3514221.3517823>. Tsz Nam Chan, Pak Lon Ip, Kaiyan Zhao, Leong Hou U, Byron Choi, Jianliang Xu (2022) <doi:10.14778/3554821.3554855>. Tsz Nam Chan, Pak Lon Ip, Leong Hou U, Byron Choi, Jianliang Xu (2022) <doi:10.14778/3503585.3503591>. Tsz Nam Chan, Pak Lon Ip, Leong Hou U, Byron Choi, Jianliang Xu (2022) <doi:10.14778/3494124.3494135>. Tsz Nam Chan, Pak Lon Ip, Leong Hou U, Weng Hou [...truncated...]
URL: https://github.com/bojianzhu/Rlibkdv
BugReports: https://github.com/bojianzhu/Rlibkdv/issues
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: leaflet, raster, magrittr, Rcpp, sf
Depends: R (>= 2.10)
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2023-10-20 11:04:39 UTC; bojianzhu
Author: Bojian Zhu [cre, aut], Tsz Nam Chan [aut], Leong Hou U [aut], Dingming Wu [aut], Jianliang Xu [aut], LibKDV Group [cph]
Repository: CRAN
Date/Publication: 2023-10-21 23:50:05 UTC

More information about Rlibkdv at CRAN
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Package multibias updated to version 1.2.1 with previous version 1.2.0 dated 2023-10-16

Title: Simultaneous Multi-Bias Adjustment
Description: Quantify the causal effect of a binary exposure on a binary outcome with adjustment for multiple biases. The functions can simultaneously adjust for any combination of uncontrolled confounding, exposure misclassification, and selection bias. The underlying method generalizes the concept of combining inverse probability of selection weighting with predictive value weighting. Simultaneous multi-bias analysis can be used to enhance the validity and transparency of real-world evidence obtained from observational, longitudinal studies. Based on the work from Paul Brendel, Aracelis Torres, Onyebuchi Arah (2023) <doi:10.1093/ije/dyad001>.
Author: Paul Brendel [aut, cre, cph]
Maintainer: Paul Brendel <pcbrendel@gmail.com>

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Package ggspectra updated to version 0.3.12 with previous version 0.3.11 dated 2023-04-03

Title: Extensions to 'ggplot2' for Radiation Spectra
Description: Additional annotations, stats, geoms and scales for plotting "light" spectra with 'ggplot2', together with specializations of ggplot() and autoplot() methods for spectral data and waveband definitions stored in objects of classes defined in package 'photobiology'. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] , Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>

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Package DAISIE updated to version 4.4.1 with previous version 4.4.0 dated 2023-04-02

Title: Dynamical Assembly of Islands by Speciation, Immigration and Extinction
Description: Simulates and computes the (maximum) likelihood of a dynamical model of island biota assembly through speciation, immigration and extinction. See Valente et al. (2015) <doi:10.1111/ele.12461>.
Author: Rampal S. Etienne [aut, cre] , Luis Valente [aut] , Albert B. Phillimore [aut] , Bart Haegeman [aut] , Joshua W. Lambert [aut] , Pedro Santos Neves [aut] , Shu Xie [aut] , Richel J.C. Bilderbeek [aut] , Hanno Hildenbrandt [aut] , Torsten Hauffe [ctb] [...truncated...]
Maintainer: Rampal S. Etienne <r.s.etienne@rug.nl>

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New package biogeom with initial version 1.3.7
Package: biogeom
Title: Biological Geometries
Version: 1.3.7
Date: 2023-10-21
Author: Peijian Shi [aut, cre], Johan Gielis [aut], Brady K. Quinn [aut]
Maintainer: Peijian Shi <pjshi@njfu.edu.cn>
Imports: spatstat.geom (>= 2.4-0)
Description: Is used to simulate and fit biological geometries. 'biogeom' incorporates several novel universal parametric equations that can generate the profiles of bird eggs, flowers, linear and lanceolate leaves, seeds, starfish, and tree-rings (Gielis (2003) <doi:10.3732/ajb.90.3.333>; Shi et al. (2020) <doi:10.3390/sym12040645>), three growth-rate curves representing the ontogenetic growth trajectories of animals and plants against time, and the axially symmetrical and integral forms of all these functions (Shi et al. (2017) <doi:10.1016/j.ecolmodel.2017.01.012>; Shi et al. (2021) <doi:10.3390/sym13081524>). The optimization method proposed by Nelder and Mead (1965) <doi:10.1093/comjnl/7.4.308> was used to estimate model parameters. 'biogeom' includes several real data sets of the boundary coordinates of natural shapes, including avian eggs, fruit, lanceolate and ovate leaves, tree rings, seeds, and sea stars,and can be potentially applied to other natural shapes. [...truncated...]
Depends: R (>= 4.2.0)
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2023-10-21 05:39:11 UTC; PEIJIAN SHI
Repository: CRAN
Date/Publication: 2023-10-21 23:40:10 UTC

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Package AMR updated to version 2.1.1 with previous version 2.1.0 dated 2023-07-16

Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in <doi:10.18637/jss.v104.i03>.
Author: Matthijs S. Berends [aut, cre] , Christian F. Luz [aut, ctb] , Dennis Souverein [aut, ctb] , Erwin E. A. Hassing [aut, ctb], Casper J. Albers [ths] , Peter Dutey-Magni [ctb] , Judith M. Fonville [ctb], Alex W. Friedrich [ths] , Corinna Glasner [ths] [...truncated...]
Maintainer: Matthijs S. Berends <m.s.berends@umcg.nl>

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Package sharp updated to version 1.4.4 with previous version 1.4.3 dated 2023-08-27

Title: Stability-enHanced Approaches using Resampling Procedures
Description: In stability selection (N Meinshausen, P B├╝hlmann (2010) <doi:10.1111/j.1467-9868.2010.00740.x>) and consensus clustering (S Monti et al (2003) <doi:10.1023/A:1023949509487>), resampling techniques are used to enhance the reliability of the results. In this package, hyper-parameters are calibrated by maximising model stability, which is measured under the null hypothesis that all selection (or co-membership) probabilities are identical (B Bodinier et al (2023) <doi:10.1093/jrsssc/qlad058>). Functions are readily implemented for the use of LASSO regression, sparse PCA, sparse (group) PLS or graphical LASSO in stability selection, and hierarchical clustering, partitioning around medoids, K means or Gaussian mixture models in consensus clustering.
Author: Barbara Bodinier [aut, cre]
Maintainer: Barbara Bodinier <barbara.bodinier@gmail.com>

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Package plotly updated to version 4.10.3 with previous version 4.10.2 dated 2023-06-03

Title: Create Interactive Web Graphics via 'plotly.js'
Description: Create interactive web graphics from 'ggplot2' graphs and/or a custom interface to the (MIT-licensed) JavaScript library 'plotly.js' inspired by the grammar of graphics.
Author: Carson Sievert [aut, cre] , Chris Parmer [aut], Toby Hocking [aut], Scott Chamberlain [aut], Karthik Ram [aut], Marianne Corvellec [aut] , Pedro Despouy [aut], Salim Brueggemann [ctb] , Plotly Technologies Inc. [cph]
Maintainer: Carson Sievert <cpsievert1@gmail.com>

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Package scribe updated to version 0.3.0 with previous version 0.2.0 dated 2023-05-22

Title: Command Argument Parsing
Description: A base dependency solution with basic argument parsing for use with 'Rscript'.
Author: Jordan Mark Barbone [aut, cph, cre]
Maintainer: Jordan Mark Barbone <jmbarbone@gmail.com>

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Package geohashTools updated to version 0.3.3 with previous version 0.3.2 dated 2022-11-21

Title: Tools for Working with Geohashes
Description: Tools for working with Gustavo Niemeyer's geohash coordinate system, including API for interacting with other common R GIS libraries.
Author: Michael Chirico [aut, cre], Dmitry Shkolnik [ctb]
Maintainer: Michael Chirico <MichaelChirico4@gmail.com>

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Package IPWboxplot updated to version 0.1.2 with previous version 0.1.1 dated 2022-04-22

Title: Adapted Boxplot to Missing Observations
Description: Boxplots adapted to the happenstance of missing observations where drop-out probabilities can be given by the practitioner or modelled using auxiliary covariates. The paper of "Zhang, Z., Chen, Z., Troendle, J. F. and Zhang, J.(2012) <doi:10.1111/j.1541-0420.2011.01712.x>", proposes estimators of marginal quantiles based on the Inverse Probability Weighting method.
Author: Ana Maria Bianco [aut], Graciela Boente [aut], Ana Perez-Gonzalez [aut]
Maintainer: Ana Perez-Gonzalez <anapg@uvigo.es>

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Package bWGR updated to version 2.2.3 with previous version 2.2.2 dated 2023-09-03

Title: Bayesian Whole-Genome Regression
Description: Whole-genome regression methods on Bayesian framework fitted via EM or Gibbs sampling, single step (<doi:10.1534/g3.119.400728>), univariate and multivariate (<doi:10.1186/s12711-022-00730-w>), with optional kernel term and sampling techniques (<doi:10.1186/s12859-017-1582-3>).
Author: Alencar Xavier [aut, cre] , William Muir [aut], David Habier [aut], Kyle Kocak [aut], Shizhong Xu [aut], Katy Rainey [aut]
Maintainer: Alencar Xavier <alenxav@gmail.com>

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Package proteus updated to version 1.1.4 with previous version 1.1.3 dated 2023-09-17

Title: Multiform Seq2Seq Model for Time-Feature Analysis
Description: Seq2seq time-feature analysis based on variational model, with a wide range of distributions available for the latent variable.
Author: Giancarlo Vercellino
Maintainer: Giancarlo Vercellino <giancarlo.vercellino@gmail.com>

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Package logistic4p updated to version 1.6 with previous version 1.5 dated 2017-05-31

Title: Logistic Regression with Misclassification in Dependent Variables
Description: Error in a binary dependent variable, also known as misclassification, has not drawn much attention in psychology. Ignoring misclassification in logistic regression can result in misleading parameter estimates and statistical inference. This package conducts logistic regression analysis with misspecification in outcome variables.
Author: Haiyan Liu and Zhiyong Zhang
Maintainer: Zhiyong Zhang <johnnyzhz@gmail.com>

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Package hstats updated to version 1.0.0 with previous version 0.3.0 dated 2023-09-29

Title: Interaction Statistics
Description: Fast, model-agnostic implementation of different H-statistics introduced by Jerome H. Friedman and Bogdan E. Popescu (2008) <doi:10.1214/07-AOAS148>. These statistics quantify interaction strength per feature, feature pair, and feature triple. The package supports multi-output predictions and can account for case weights. In addition, several variants of the original statistics are provided. The shape of the interactions can be explored through partial dependence plots or individual conditional expectation plots. 'DALEX' explainers, meta learners ('mlr3', 'tidymodels', 'caret') and most other models work out-of-the-box.
Author: Michael Mayer [aut, cre]
Maintainer: Michael Mayer <mayermichael79@gmail.com>

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Package Rgof updated to version 1.2.1 with previous version 1.1.0 dated 2023-04-19

Title: 1d Goodness of Fit Tests
Description: Routines that allow the user to run a large number of goodness-of-fit tests. It allows for data to be continuous or discrete. It includes routines to estimate the power of the tests and display them as a power graph.
Author: Wolfgang Rolke [aut, cre]
Maintainer: Wolfgang Rolke <wolfgang.rolke@upr.edu>

Diff between Rgof versions 1.1.0 dated 2023-04-19 and 1.2.1 dated 2023-10-21

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Package hyd1d (with last version 0.4.6) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2023-08-21 0.4.6
2023-07-19 0.4.5
2023-03-06 0.4.4
2023-02-27 0.4.3
2023-02-22 0.4.2
2023-01-09 0.4.1

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Package GeoModels updated to version 1.1.4 with previous version 1.1.3 dated 2023-09-23

Title: Procedures for Gaussian and Non Gaussian Geostatistical (Large) Data Analysis
Description: Functions for Gaussian and Non Gaussian (bivariate) spatial and spatio-temporal data analysis are provided for a) simulation and inference for random fields using standard likelihood and a likelihood approximation method called weighted composite likelihood based on pairs and b) prediction using (local) best linear unbiased prediction. Weighted composite likelihood can be very efficient for estimating massive datasets. Both regression and spatial (temporal) dependence analysis can be jointly performed. Covariance functions for spatial and spatial-temporal data on Euclidean domains and spheres are provided. There are also many useful functions for plotting and performing diagnostic analysis. Different non Gaussian random fields can be considered in the analysis. Among them, random fields with marginal distributions such as Skew-Gaussian, Student-t, Tukey-h, Sin-Arcsin, Two-piece, Weibull, Gamma, Log-Gaussian, Binomial, Negative Binomial and Poisson. See the URL for the papers associ [...truncated...]
Author: Moreno Bevilacqua [aut, cre] , Victor Morales-Onate [aut] , Christian Caamano-Carrillo [aut]
Maintainer: Moreno Bevilacqua <moreno.bevilacqua89@gmail.com>

Diff between GeoModels versions 1.1.3 dated 2023-09-23 and 1.1.4 dated 2023-10-21

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Package rclipboard updated to version 0.2.0 with previous version 0.1.6 dated 2022-08-07

Title: Shiny/R Wrapper for 'clipboard.js'
Description: Leverages the functionality of 'clipboard.js', a JavaScript library for HMTL5-based copy to clipboard from web pages (see <https://clipboardjs.com> for more information), and provides a reactive copy-to-clipboard UI button component, called 'rclipButton', and a a reactive copy-to-clipboard UI link component, called 'rclipLink', for 'shiny' R applications.
Author: Sebastien Bihorel
Maintainer: Sebastien Bihorel <sb.pmlab@gmail.com>

Diff between rclipboard versions 0.1.6 dated 2022-08-07 and 0.2.0 dated 2023-10-21

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Package GFA updated to version 1.0.5 with previous version 1.0.4 dated 2023-10-07

Title: Group Factor Analysis
Description: Factor analysis implementation for multiple data sources, i.e., for groups of variables. The whole data analysis pipeline is provided, including functions and recommendations for data normalization and model definition, as well as missing value prediction and model visualization. The model group factor analysis (GFA) is inferred with Gibbs sampling, and it has been presented originally by Virtanen et al. (2012), and extended in Klami et al. (2015) <DOI:10.1109/TNNLS.2014.2376974> and Bunte et al. (2016) <DOI:10.1093/bioinformatics/btw207>; for details, see the citation info.
Author: Eemeli Leppaeaho [aut, cre], Seppo Virtanen [aut], Muhammad Ammad-ud-din [ctb], Suleiman A Khan [ctb], Tommi Suvitaival [ctb], Inka Saarinen [ctb], Samuel Kaski [ctb]
Maintainer: Eemeli Leppaeaho <eemeli.leppaaho@gmail.com>

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Package qlcal updated to version 0.0.8 with previous version 0.0.7 dated 2023-07-19

Title: R Bindings to the Calendaring Functionality of 'QuantLib'
Description: 'QuantLib' bindings are provided for R using 'Rcpp' via an evolved version of the initial header-only 'Quantuccia' project offering an subset of 'QuantLib' (now maintained separately just for the calendaring subset). See the included file 'AUTHORS' for a full list of contributors to 'QuantLib' (and hence also 'Quantuccia').
Author: Dirk Eddelbuettel; the authors and contributors of QuantLib
Maintainer: Dirk Eddelbuettel <edd@debian.org>

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Package ldt updated to version 0.4.2 with previous version 0.3.2.1 dated 2023-08-07

Title: Automated Uncertainty Analysis
Description: Methods and tools for model selection and multi-model inference (Burnham and Anderson (2002) <doi:10.1007/b97636>, among others). 'SUR' (for parameter estimation), 'logit'/'probit' (for binary classification), and 'VARMA' (for time-series forecasting) are implemented. Evaluations are both in-sample and out-of-sample. It is designed to be efficient in terms of CPU usage and memory consumption.
Author: Ramin Mojab [aut, cre], Stephen Becker [cph] by Ciyou Zhu . L-BFGS-B Version 3.0 is an algorithmic update from 2011, with coding changes by J. L. Morales)
Maintainer: Ramin Mojab <rmojab63@gmail.com>

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Package disaggregation (with last version 0.2.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2023-09-07 0.2.1
2023-04-28 0.2.0
2022-09-06 0.1.4
2020-02-19 0.1.3
2019-12-17 0.1.2
2019-12-09 0.1.1
2019-12-06 0.1.0

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Package checkdown updated to version 0.0.11 with previous version 0.0.10 dated 2023-09-24

Title: Check-Fields and Check-Boxes for 'rmarkdown'
Description: Creates auto-grading check-fields and check-boxes for 'rmarkdown' or 'quarto' HTML. It can be used in class, when teacher share materials and tasks, so students can solve some problems and check their work. In contrast to the 'learnr' package, the 'checkdown' package works serverlessly without 'shiny'.
Author: George Moroz [aut, cre]
Maintainer: George Moroz <agricolamz@gmail.com>

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Package BoundaryStats updated to version 2.1.1 with previous version 2.0.1 dated 2023-06-28

Title: Boundary Overlap Statistics
Description: Analysis workflow for finding geographic boundaries of ecological or landscape traits and comparing the placement of geographic boundaries of two traits. If data are trait values, trait data are transformed to boundary intensities based on approximate first derivatives across latitude and longitude. The package includes functions to create custom null models based on the input data. The boundary statistics are described in: Fortin, Drapeau, and Jacquez (1996) <doi:10.2307/3545584>.
Author: Amy Luo [aut, cre, cph] , Elizabeth Derryberry [ths]
Maintainer: Amy Luo <aluo@vols.utk.edu>

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 man/define_boundary.Rd       |    2 
 man/mod_random_clust_sim.Rd  |    6 +-
 man/overlap_null_distrib.Rd  |   10 +++
 vignettes/BoundaryStats.Rmd  |   14 ++---
 18 files changed, 181 insertions(+), 131 deletions(-)

More information about BoundaryStats at CRAN
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Package RcppColors updated to version 0.6.0 with previous version 0.5.0 dated 2023-09-22

Title: Color Mappings and 'C++' Header Files for Color Conversion
Description: Provides 'C++' header files to deal with color conversion from some color spaces to hexadecimal with 'Rcpp', and exports some color mapping functions for usage in R. Also exports functions to convert colors from the 'HSLuv' color space for usage in R. 'HSLuv' is a human-friendly alternative to HSL.
Author: Stephane Laurent [cre, aut], Scott Spencer [aut]
Maintainer: Stephane Laurent <laurent_step@outlook.fr>

Diff between RcppColors versions 0.5.0 dated 2023-09-22 and 0.6.0 dated 2023-10-21

 DESCRIPTION               |    6 ++---
 MD5                       |   23 ++++++++++----------
 NAMESPACE                 |    1 
 NEWS.md                   |    5 ++++
 R/RcppExports.R           |    8 +++++++
 R/hsluv.R                 |   52 ++++++++++++++++++++++++++++++++++++++++++++--
 README.md                 |    4 +++
 inst/include/RcppColors.h |    1 
 man/hsi.Rd                |only
 man/hsl.Rd                |    2 -
 man/hsluv.Rd              |    2 -
 src/RcppColors.cpp        |   11 +++++++++
 src/RcppExports.cpp       |   29 +++++++++++++++++++++++++
 13 files changed, 126 insertions(+), 18 deletions(-)

More information about RcppColors at CRAN
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