Title: Brings Seurat to the Tidyverse
Description: It creates an invisible layer that allow to see the 'Seurat' object
as tibble and interact seamlessly with the tidyverse.
Author: Stefano Mangiola [aut, cre],
Maria Doyle [ctb]
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>
Diff between tidyseurat versions 0.7.9 dated 2023-11-27 and 0.8.0 dated 2024-01-09
DESCRIPTION | 6 +-- MD5 | 19 +++++----- NAMESPACE | 3 + R/dplyr_methods.R | 38 +++++++++++++++++++++ build/stage23.rdb |binary build/tidyseurat.pdf |binary inst/doc/figures_article.html | 8 +--- inst/doc/introduction.html | 76 +++++++++++++++++++----------------------- man/group_split.Rd |only man/slice.Rd | 4 +- tests/testthat/test-dplyr.R | 29 ++++++++++++++++ 11 files changed, 123 insertions(+), 60 deletions(-)
Title: L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments,
and Many Distributions
Description: Extensive functions for Lmoments (LMs) and probability-weighted moments (PWMs),
distribution parameter estimation, LMs for distributions, LM ratio diagrams, multivariate
Lcomoments, and asymmetric (asy) trimmed LMs (TLMs). Maximum likelihood and
maximum product spacings estimation are available. Right-tail and left-tail LM censoring
by threshold or indicator variable are available. LMs of residual (resid) and reversed
(rev) residual life are implemented along with 13 quantile operators for reliability analyses.
Exact analytical bootstrap estimates of order statistics, LMs, and LM var-covars are available.
Harri-Coble Tau34-squared Normality Test is available. Distributions with L, TL, and added
(+) support for right-tail censoring (RC) encompass: Asy Exponential (Exp) Power [L],
Asy Triangular [L], Cauchy [TL], Eta-Mu [L], Exp. [L], Gamma [L], Generalized (Gen) Exp
Poisson [L], Gen Extreme Value [L], Gen Lambda [L, TL], Gen Logistic [L], Gen Normal [L],
Gen Pareto [L+RC, TL], Govindara [...truncated...]
Author: William Asquith
Maintainer: William Asquith <william.asquith@ttu.edu>
Diff between lmomco versions 2.4.11 dated 2023-08-30 and 2.4.13 dated 2024-01-09
DESCRIPTION | 8 +-- MD5 | 48 ++++++++++++---------- NAMESPACE | 4 + NEWS | 40 ++++++++++++++++++- R/TLmom.R | 18 +++----- R/distfitgovloc.R |only R/f2flo.R | 4 - R/lmomkap.R | 1 R/theoLmoms.R | 12 +++-- R/theoTLmoms.R | 101 +++++++++++++++++++++++++++--------------------- R/theopwms.R | 61 ++++++++++++++++++++++------ R/xlo2qua.R |only build/partial.rdb |binary man/disfitgovloc.Rd |only man/disfitqua.Rd | 6 +- man/f2f.Rd | 2 man/f2flo.Rd | 2 man/lmomkap.Rd | 4 - man/lmoms.bootbarvar.Rd | 6 +- man/par2qua2lo.Rd | 2 man/parpdq4.Rd | 7 +-- man/plotradarlmr.Rd | 3 - man/theoLmoms.Rd | 20 +++++---- man/theoTLmoms.Rd | 64 ++++++++++++++++++++---------- man/theopwms.Rd | 35 +++++++++++++++- man/x2xlo.Rd | 2 man/xlo2qua.Rd |only 27 files changed, 299 insertions(+), 151 deletions(-)
Title: Irucka Embry's Miscellaneous Data Collection
Description: Miscellaneous data sets [Chemistry, Engineering Economics,
Environmental/Water Resources Engineering, Nuclear Accidents, US
Presidential Elections, and US Continental Congress Presidents].
Author: Irucka Embry [aut, cre]
Maintainer: Irucka Embry <iembry@ecoccs.com>
Diff between iemiscdata versions 1.0.0 dated 2023-09-25 and 1.0.1 dated 2024-01-09
DESCRIPTION | 6 MD5 | 362 +++++----- NEWS.md | 5 R/data-Fp.R | 4 R/data-Fukushima_2011_FieldMeasurements_5.R | 32 R/data-Fukushima_2011_FieldSampleAirResults_2.R | 46 - R/data-Fukushima_2011_FieldSampleInstrumentResults.R | 48 - R/data-Fukushima_2011_FieldSampleSoilResults_2.R | 50 - R/data-Ia.R | 4 R/data-c_agricultural.R | 8 R/data-c_urban.R | 10 R/data-cn_agricultural.R | 14 R/data-cn_agricultural_notes.R | 4 R/data-cn_arid_semiarid.R | 12 R/data-cn_arid_semiarid_notes.R | 4 R/data-cn_other_agricultural.R | 14 R/data-cn_other_agricultural_notes.R | 4 R/data-cn_urban.R | 12 R/data-cn_urban_notes.R | 4 R/data-duh_gamma.R | 6 R/data-gases.R | 2 R/data-gases_plain.R | 2 R/data-greenhouse_gases_cloudy_notes_wikipedia.R | 4 R/data-hsg.R | 4 R/data-hsg_definitions.R | 4 R/data-nsheetflow.R | 4 R/data-nsheetflow_notes.R | 4 R/data-raddata_US_Fukushima_2011.R | 26 R/data-raddata_usa_territories_Fukushima_2011.R | 82 +- R/data-rainfall_distribution_equation_coefficients.R | 10 R/data-rainfall_type_equation_coefficients.R | 10 R/data-riprap_table_ft.R | 8 R/data-riprap_table_in.R | 8 R/data-riprap_table_mm.R | 8 R/data-riprap_table_yd.R | 8 R/data-runoff_depth.R | 28 R/data-runoff_depth_notes.R | 4 R/data-uh_ratios.R | 6 R/data-uh_ratios_masscurve.R | 8 build/vignette.rds |binary data/Fp.rda |binary data/Fukushima_2011_FieldMeasurements_5.rda |binary data/Fukushima_2011_FieldMeasurements_5_Metadata.rda |binary data/Fukushima_2011_FieldSampleAirResults_2.rda |binary data/Fukushima_2011_FieldSampleAirResults_2_Metadata.rda |binary data/Fukushima_2011_FieldSampleInstrumentResults.rda |binary data/Fukushima_2011_FieldSampleInstrumentResults_Metadata.rda |binary data/Fukushima_2011_FieldSampleSoilResults_2.rda |binary data/Fukushima_2011_FieldSampleSoilResults_2_Metadata.rda |binary data/Ia.rda |binary data/USAEC_facilities_nuclear_accidents.rda |binary data/USA_primary_water_contaminants.rda |binary data/USA_primary_water_contaminants_notes.rda |binary data/USA_secondary_water_contaminants.rda |binary data/USA_secondary_water_contaminants_notes.rda |binary data/c_agricultural.rda |binary data/c_urban.rda |binary data/civilian_nuclear_accidents_wiki.rda |binary data/cn_agricultural.rda |binary data/cn_agricultural_notes.rda |binary data/cn_arid_semiarid.rda |binary data/cn_arid_semiarid_notes.rda |binary data/cn_other_agricultural.rda |binary data/cn_other_agricultural_notes.rda |binary data/cn_urban.rda |binary data/cn_urban_notes.rda |binary data/common_gases.rda |binary data/common_gases_simp.rda |binary data/dry_air.rda |binary data/duh_gamma.rda |binary data/elements.rda |binary data/elements_pubchem.rda |binary data/elements_wiki.rda |binary data/exceptional_tn_waters.rda |binary data/exceptional_tn_waters_abbrv.rda |binary data/gas_constant.rda |binary data/gases.rda |binary data/gases_plain.rda |binary data/gases_table.rda |binary data/greenhouse_gases_cloudy_notes_wikipedia.rda |binary data/greenhouse_gases_cloudy_sky.rda |binary data/greenhouse_gases_cloudy_wikipedia.rda |binary data/greenhouse_gases_contributions.rda |binary data/hsg.rda |binary data/hsg_definitions.rda |binary data/i1.rda |binary data/i10.rda |binary data/i12.rda |binary data/i15.rda |binary data/i18.rda |binary data/i1_50.rda |binary data/i2.rda |binary data/i20.rda |binary data/i25.rda |binary data/i3.rda |binary data/i4.rda |binary data/i5.rda |binary data/i6.rda |binary data/i7.rda |binary data/i8.rda |binary data/i9.rda |binary data/i_25.rda |binary data/i_50.rda |binary data/i_75.rda |binary data/military_nuclear_accidents_wiki.rda |binary data/nchannel.rda |binary data/nmetalpipe.rda |binary data/norfolk_southern_epoh.rda |binary data/npartfull.rda |binary data/nsheetflow.rda |binary data/nsheetflow_notes.rda |binary data/nuclear_accidents.rda |binary data/nuclear_accidents_ranked.rda |binary data/nuclear_accidents_wiki.rda |binary data/nuclear_power_accidents_country_wiki.rda |binary data/pres_cont_congress.rda |binary data/pres_elect.rda |binary data/r10.rda |binary data/r20.rda |binary data/r8.rda |binary data/raddata_US_Fukushima_2011.rda |binary data/raddata_usa_territories_Fukushima_2011.rda |binary data/rainfall_distribution_equation_coefficients.rda |binary data/rainfall_type_equation_coefficients.rda |binary data/riprap_table_ft.rda |binary data/riprap_table_in.rda |binary data/riprap_table_mm.rda |binary data/riprap_table_yd.rda |binary data/runoff_depth.rda |binary data/runoff_depth_notes.rda |binary data/uh_ratios.rda |binary data/uh_ratios_masscurve.rda |binary data/water_vapour_pressure.rda |binary inst/doc/East-Palestine-Ohio_Norfolk-Southern-Train-32N-Cargo_Chemical-Databases.R | 2 inst/doc/East-Palestine-Ohio_Norfolk-Southern-Train-32N-Cargo_Chemical-Databases.pdf |binary inst/doc/Mannings-n-examples.R | 14 inst/doc/Mannings-n-examples.pdf |binary inst/doc/TN_ExceptionalMap.R | 2 inst/doc/TN_ExceptionalMap.pdf |binary inst/doc/Tables_with_Notes.R | 20 inst/doc/Tables_with_Notes.pdf |binary inst/doc/US_Locations_Fukushima_Radiation_Sampled_2011.R | 2 inst/doc/US_Locations_Fukushima_Radiation_Sampled_2011.pdf |binary inst/doc/View-PDF-table.pdf |binary inst/doc/Weighted_CN-and-Composite_CN_Examples.R | 8 inst/doc/Weighted_CN-and-Composite_CN_Examples.pdf |binary man/Fp.Rd | 4 man/Fukushima_2011_FieldMeasurements_5.Rd | 32 man/Fukushima_2011_FieldSampleAirResults_2.Rd | 46 - man/Fukushima_2011_FieldSampleInstrumentResults.Rd | 48 - man/Fukushima_2011_FieldSampleSoilResults_2.Rd | 50 - man/Ia.Rd | 4 man/c_agricultural.Rd | 8 man/c_urban.Rd | 10 man/cn_agricultural.Rd | 14 man/cn_agricultural_notes.Rd | 4 man/cn_arid_semiarid.Rd | 12 man/cn_arid_semiarid_notes.Rd | 4 man/cn_other_agricultural.Rd | 14 man/cn_other_agricultural_notes.Rd | 4 man/cn_urban.Rd | 12 man/cn_urban_notes.Rd | 4 man/duh_gamma.Rd | 6 man/gases.Rd | 2 man/gases_plain.Rd | 2 man/greenhouse_gases_cloudy_notes_wikipedia.Rd | 4 man/hsg.Rd | 4 man/hsg_definitions.Rd | 4 man/nsheetflow.Rd | 4 man/nsheetflow_notes.Rd | 4 man/raddata_US_Fukushima_2011.Rd | 26 man/raddata_usa_territories_Fukushima_2011.Rd | 82 +- man/rainfall_distribution_equation_coefficients.Rd | 10 man/rainfall_type_equation_coefficients.Rd | 10 man/riprap_table_ft.Rd | 8 man/riprap_table_in.Rd | 8 man/riprap_table_mm.Rd | 8 man/riprap_table_yd.Rd | 8 man/runoff_depth.Rd | 28 man/runoff_depth_notes.Rd | 4 man/uh_ratios.Rd | 6 man/uh_ratios_masscurve.Rd | 8 182 files changed, 719 insertions(+), 714 deletions(-)
Title: Covariate Balance Tables and Plots
Description: Generate balance tables and plots for covariates of groups preprocessed through
matching, weighting or subclassification, for example, using propensity scores. Includes
integration with 'MatchIt', 'twang', 'Matching', 'optmatch', 'CBPS', 'ebal', 'WeightIt',
'cem', 'sbw', and 'designmatch' for assessing balance on the output of their preprocessing
functions. Users can also specify data for balance assessment not generated through
the above packages. Also included are methods for assessing balance in clustered or
multiply imputed data sets or data sets with multi-category, continuous, or longitudinal treatments.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between cobalt versions 4.5.2 dated 2023-11-20 and 4.5.3 dated 2024-01-09
DESCRIPTION | 8 MD5 | 35 +- NEWS.md | 14 - R/bal.compute.R | 54 ++- R/bal.plot.R | 241 ++++++++++------- R/balance-summary.R | 1 R/base.bal.tab.R | 15 + R/class-bal.tab.cluster.R | 2 R/functions_for_processing.R | 490 +++++++++++++++++++++--------------- R/love.plot.R | 197 ++++++++------ R/splitfactor.R | 14 - build/cobalt.pdf |binary build/stage23.rdb |binary inst/doc/cobalt.html | 10 inst/doc/longitudinal-treat.html | 4 inst/doc/love.plot.html | 4 inst/doc/other-packages.html | 62 ++-- inst/doc/segmented-data.html | 124 +++------ tests/testthat/test-github-issues.R |only 19 files changed, 723 insertions(+), 552 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') 'SQLite' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'SQLite' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcsqlite versions 0.8.0 dated 2023-11-09 and 0.9.0 dated 2024-01-09
DESCRIPTION | 6 MD5 | 10 NEWS.md | 8 configure | 2 tools/sqlite3.c |20373 ++++++++++++++++++++++++++++++++++++++++---------------- tools/sqlite3.h | 715 + 6 files changed, 15238 insertions(+), 5876 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') 'PostgreSQL' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'PostgreSQL' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcpostgresql versions 0.8.0.1 dated 2023-12-12 and 0.9.0 dated 2024-01-09
adbcpostgresql-0.8.0.1/adbcpostgresql/src/vendor |only adbcpostgresql-0.9.0/adbcpostgresql/DESCRIPTION | 6 adbcpostgresql-0.9.0/adbcpostgresql/MD5 | 15 adbcpostgresql-0.9.0/adbcpostgresql/NEWS.md | 12 adbcpostgresql-0.9.0/adbcpostgresql/src/connection.cc | 37 - adbcpostgresql-0.9.0/adbcpostgresql/src/postgres_copy_reader.h | 306 ++++++++-- adbcpostgresql-0.9.0/adbcpostgresql/src/postgres_type.h | 3 adbcpostgresql-0.9.0/adbcpostgresql/src/postgres_util.h | 4 adbcpostgresql-0.9.0/adbcpostgresql/src/statement.cc | 143 +++- 9 files changed, 408 insertions(+), 118 deletions(-)
More information about adbcpostgresql at CRAN
Permanent link
Title: A Database Management Tool
Description: A database management tool built as a 'shiny' application. Connect to various
databases to send queries, upload files, preview tables, and more.
Author: Marcus Codrescu [aut, cre]
Maintainer: Marcus Codrescu <m.codrescu@outlook.com>
Diff between octopus versions 0.4.1 dated 2023-11-07 and 0.4.2 dated 2024-01-09
DESCRIPTION | 10 MD5 | 10 NEWS.md | 3 tests/testthat/test-duckdb_connection.R | 456 +++++++++++++-------------- tests/testthat/test-table_modal_w_download.R | 2 tests/testthat/test-view_database.R | 4 6 files changed, 249 insertions(+), 236 deletions(-)
Title: Interface to the 'ASSP' Library
Description: A wrapper around Michel Scheffers's 'libassp' (<https://libassp.sourceforge.net/>).
The 'libassp' (Advanced Speech Signal Processor) library aims at providing
functionality for handling speech signal files in most common audio formats
and for performing analyses common in phonetic science/speech science. This
includes the calculation of formants, fundamental frequency, root mean
square, auto correlation, a variety of spectral analyses, zero crossing
rate, filtering etc. This wrapper provides R with a large subset of
'libassp's signal processing functions and provides them to the user in a
(hopefully) user-friendly manner.
Author: Raphael Winkelmann [aut],
Lasse Bombien [aut],
Michel Scheffers [aut],
Markus Jochim [cre, aut]
Maintainer: Markus Jochim <markusjochim@phonetik.uni-muenchen.de>
Diff between wrassp versions 1.0.4 dated 2023-04-04 and 1.0.5 dated 2024-01-09
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NEWS.md | 6 ++++++ build/vignette.rds |binary inst/doc/wrassp_intro.html | 8 ++++---- man/AsspFileFormats.Rd | 6 ++++-- man/useWrasspLogger.Rd | 4 +++- man/wrasspOutputInfos.Rd | 4 +++- src/dataobj.c | 16 ++++++++-------- 9 files changed, 41 insertions(+), 29 deletions(-)
Title: Soil Database Interface
Description: A collection of functions for reading soil data from U.S. Department of Agriculture Natural Resources Conservation Service (USDA-NRCS) and National Cooperative Soil Survey (NCSS) databases.
Author: Dylan Beaudette [aut],
Jay Skovlin [aut],
Stephen Roecker [aut],
Andrew Brown [aut, cre]
Maintainer: Andrew Brown <andrew.g.brown@usda.gov>
Diff between soilDB versions 2.8.0 dated 2023-12-21 and 2.8.1 dated 2024-01-09
DESCRIPTION | 7 MD5 | 48 - NEWS.md | 17 R/fetchHenry.R | 3 R/fetchSDA_spatial.R | 23 R/fetchSoilGrids.R | 54 - R/get_SDA_coecoclass.R | 30 R/get_mapunit_from_NASIS.R | 29 R/waterDayYear.R | 2 build/vignette.rds |binary inst/CITATION | 6 inst/WORDLIST | 48 - inst/doc/fetchNASIS.Rmd | 7 inst/doc/fetchNASIS.html | 1630 +++-------------------------------- inst/doc/wcs-ssurgo.Rmd | 2 inst/doc/wcs-ssurgo.html | 10 man/fetchSDA_spatial.Rd | 2 man/fetchSoilGrids.Rd | 20 man/get_SDA_coecoclass.Rd | 6 man/get_mapunit_from_NASIS.Rd | 5 tests/testthat/test-fetchHenry.R | 39 tests/testthat/test-fetchSoilGrids.R | 4 tests/testthat/test-waterDayYear.R | 7 vignettes/fetchNASIS.Rmd | 7 vignettes/wcs-ssurgo.Rmd | 2 25 files changed, 389 insertions(+), 1619 deletions(-)
Title: Empirical Dynamic Modeling ('EDM')
Description: An implementation of 'EDM' algorithms based on research software developed for internal use at the Sugihara Lab ('UCSD/SIO'). The package is implemented with 'Rcpp' wrappers around the 'cppEDM' library. It implements the 'simplex' projection method from Sugihara & May (1990) <doi:10.1038/344734a0>, the 'S-map' algorithm from Sugihara (1994) <doi:10.1098/rsta.1994.0106>, convergent cross mapping described in Sugihara et al. (2012) <doi:10.1126/science.1227079>, and, 'multiview embedding' described in Ye & Sugihara (2016) <doi:10.1126/science.aag0863>.
Author: Joseph Park [aut, cre] ,
Cameron Smith [aut] ,
George Sugihara [aut, ccp] ,
Ethan Deyle [aut] ,
Erik Saberski [ctb] ,
Hao Ye [ctb] ,
The Regents of the University of California [cph]
Maintainer: Joseph Park <JosephPark@IEEE.org>
Diff between rEDM versions 1.15.1 dated 2023-11-10 and 1.15.3 dated 2024-01-09
DESCRIPTION | 8 ++-- MD5 | 40 ++++++++++---------- NEWS.md | 2 + R/EDM.R | 53 +++++++++++++++++++++++---- R/EDM_AuxFuncs.R | 82 +++++++++++++++++++++++++++++-------------- man/CCM.Rd | 7 ++- man/Embed.Rd | 5 +- man/EmbedDimension.Rd | 7 ++- man/Multiview.Rd | 7 ++- man/PredictInterval.Rd | 7 ++- man/PredictNonlinear.Rd | 7 ++- man/SMap.Rd | 7 ++- man/Simplex.Rd | 7 ++- src/cppEDM/src/API.cc | 3 - src/cppEDM/src/CCM.cc | 48 ++++++++++++++++++------- src/cppEDM/src/Common.cc | 13 +++--- src/cppEDM/src/Common.h | 3 + src/cppEDM/src/DataFrame.h | 22 ++++++++--- src/cppEDM/src/Eval.cc | 2 - src/cppEDM/src/Parameter.cc | 33 +++++++++++++---- vignettes/rEDM-tutorial.html | 20 +++++----- 21 files changed, 255 insertions(+), 128 deletions(-)
Title: 'Amazon Web Services' Storage Services
Description: Interface to 'Amazon Web Services' storage services,
including 'Simple Storage Service' ('S3') and more
<https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.storage versions 0.4.0 dated 2023-09-11 and 0.5.0 dated 2024-01-09
DESCRIPTION | 9 MD5 | 609 + NAMESPACE | 1 R/backup_interfaces.R | 246 R/backup_operations.R | 901 ++ R/backup_service.R | 57 R/backupstorage_service.R | 38 R/dlm_interfaces.R | 10 R/dlm_operations.R | 134 R/dlm_service.R | 40 R/ebs_service.R | 38 R/efs_interfaces.R | 26 R/efs_operations.R | 181 R/efs_service.R | 45 R/finspacedata_interfaces.R | 6 R/finspacedata_operations.R | 35 R/finspacedata_service.R | 48 R/fsx_interfaces.R | 92 R/fsx_operations.R | 173 R/fsx_service.R | 42 R/glacier_service.R | 38 R/omics_interfaces.R |only R/omics_operations.R |only R/omics_service.R |only R/recyclebin_interfaces.R | 12 R/recyclebin_service.R | 42 R/s3_interfaces.R | 134 R/s3_operations.R | 3410 +++++++--- R/s3_service.R | 208 R/s3control_interfaces.R | 326 R/s3control_operations.R | 1241 +++ R/s3control_service.R | 152 R/s3outposts_interfaces.R | 2 R/s3outposts_service.R | 38 R/storagegateway_interfaces.R | 2 R/storagegateway_operations.R | 12 R/storagegateway_service.R | 42 man/backup.Rd | 57 man/backup_create_logically_air_gapped_backup_vault.Rd | 5 man/backup_create_restore_testing_plan.Rd |only man/backup_create_restore_testing_selection.Rd |only man/backup_delete_restore_testing_plan.Rd |only man/backup_delete_restore_testing_selection.Rd |only man/backup_get_restore_job_metadata.Rd |only man/backup_get_restore_testing_inferred_metadata.Rd |only man/backup_get_restore_testing_plan.Rd |only man/backup_get_restore_testing_selection.Rd |only man/backup_list_backup_job_summaries.Rd |only man/backup_list_backup_jobs.Rd | 23 man/backup_list_backup_plan_templates.Rd | 2 man/backup_list_backup_plan_versions.Rd | 2 man/backup_list_backup_plans.Rd | 2 man/backup_list_backup_selections.Rd | 2 man/backup_list_backup_vaults.Rd | 2 man/backup_list_copy_job_summaries.Rd |only man/backup_list_copy_jobs.Rd | 24 man/backup_list_legal_holds.Rd | 2 man/backup_list_protected_resources.Rd | 2 man/backup_list_protected_resources_by_backup_vault.Rd | 2 man/backup_list_recovery_points_by_backup_vault.Rd | 22 man/backup_list_recovery_points_by_legal_hold.Rd | 2 man/backup_list_recovery_points_by_resource.Rd | 2 man/backup_list_restore_job_summaries.Rd |only man/backup_list_restore_jobs.Rd | 30 man/backup_list_restore_jobs_by_protected_resource.Rd |only man/backup_list_restore_testing_plans.Rd |only man/backup_list_restore_testing_selections.Rd |only man/backup_list_tags.Rd | 2 man/backup_put_restore_validation_result.Rd |only man/backup_update_region_settings.Rd | 13 man/backup_update_restore_testing_plan.Rd |only man/backup_update_restore_testing_selection.Rd |only man/backupstorage.Rd | 38 man/dlm.Rd | 40 man/dlm_create_lifecycle_policy.Rd | 89 man/dlm_get_lifecycle_policies.Rd | 11 man/dlm_update_lifecycle_policy.Rd | 53 man/ebs.Rd | 38 man/efs.Rd | 45 man/efs_create_access_point.Rd | 10 man/efs_create_file_system.Rd | 46 man/efs_create_mount_target.Rd | 6 man/efs_delete_replication_configuration.Rd | 4 man/efs_describe_account_preferences.Rd | 2 man/efs_describe_backup_policy.Rd | 3 man/efs_describe_lifecycle_configuration.Rd | 2 man/efs_put_lifecycle_configuration.Rd | 33 man/efs_update_file_system.Rd | 12 man/efs_update_file_system_protection.Rd |only man/finspacedata.Rd | 48 man/finspacedata_associate_user_to_permission_group.Rd | 6 man/finspacedata_create_user.Rd | 4 man/finspacedata_disable_user.Rd | 2 man/finspacedata_disassociate_user_from_permission_group.Rd | 4 man/finspacedata_enable_user.Rd | 2 man/finspacedata_get_programmatic_access_credentials.Rd | 2 man/finspacedata_list_permission_groups_by_user.Rd | 5 man/finspacedata_list_users.Rd | 4 man/finspacedata_update_user.Rd | 6 man/fsx.Rd | 42 man/fsx_copy_snapshot_and_update_volume.Rd |only man/fsx_create_file_system.Rd | 6 man/fsx_create_file_system_from_backup.Rd | 3 man/fsx_describe_shared_vpc_configuration.Rd |only man/fsx_describe_snapshots.Rd | 8 man/fsx_disassociate_file_system_aliases.Rd | 2 man/fsx_start_misconfigured_state_recovery.Rd |only man/fsx_update_shared_vpc_configuration.Rd |only man/glacier.Rd | 38 man/omics.Rd |only man/omics_abort_multipart_read_set_upload.Rd |only man/omics_accept_share.Rd |only man/omics_batch_delete_read_set.Rd |only man/omics_cancel_annotation_import_job.Rd |only man/omics_cancel_run.Rd |only man/omics_cancel_variant_import_job.Rd |only man/omics_complete_multipart_read_set_upload.Rd |only man/omics_create_annotation_store.Rd |only man/omics_create_annotation_store_version.Rd |only man/omics_create_multipart_read_set_upload.Rd |only man/omics_create_reference_store.Rd |only man/omics_create_run_group.Rd |only man/omics_create_sequence_store.Rd |only man/omics_create_share.Rd |only man/omics_create_variant_store.Rd |only man/omics_create_workflow.Rd |only man/omics_delete_annotation_store.Rd |only man/omics_delete_annotation_store_versions.Rd |only man/omics_delete_reference.Rd |only man/omics_delete_reference_store.Rd |only man/omics_delete_run.Rd |only man/omics_delete_run_group.Rd |only man/omics_delete_sequence_store.Rd |only man/omics_delete_share.Rd |only man/omics_delete_variant_store.Rd |only man/omics_delete_workflow.Rd |only man/omics_get_annotation_import_job.Rd |only man/omics_get_annotation_store.Rd |only man/omics_get_annotation_store_version.Rd |only man/omics_get_read_set.Rd |only man/omics_get_read_set_activation_job.Rd |only man/omics_get_read_set_export_job.Rd |only man/omics_get_read_set_import_job.Rd |only man/omics_get_read_set_metadata.Rd |only man/omics_get_reference.Rd |only man/omics_get_reference_import_job.Rd |only man/omics_get_reference_metadata.Rd |only man/omics_get_reference_store.Rd |only man/omics_get_run.Rd |only man/omics_get_run_group.Rd |only man/omics_get_run_task.Rd |only man/omics_get_sequence_store.Rd |only man/omics_get_share.Rd |only man/omics_get_variant_import_job.Rd |only man/omics_get_variant_store.Rd |only man/omics_get_workflow.Rd |only man/omics_list_annotation_import_jobs.Rd |only man/omics_list_annotation_store_versions.Rd |only man/omics_list_annotation_stores.Rd |only man/omics_list_multipart_read_set_uploads.Rd |only man/omics_list_read_set_activation_jobs.Rd |only man/omics_list_read_set_export_jobs.Rd |only man/omics_list_read_set_import_jobs.Rd |only man/omics_list_read_set_upload_parts.Rd |only man/omics_list_read_sets.Rd |only man/omics_list_reference_import_jobs.Rd |only man/omics_list_reference_stores.Rd |only man/omics_list_references.Rd |only man/omics_list_run_groups.Rd |only man/omics_list_run_tasks.Rd |only man/omics_list_runs.Rd |only man/omics_list_sequence_stores.Rd |only man/omics_list_shares.Rd |only man/omics_list_tags_for_resource.Rd |only man/omics_list_variant_import_jobs.Rd |only man/omics_list_variant_stores.Rd |only man/omics_list_workflows.Rd |only man/omics_start_annotation_import_job.Rd |only man/omics_start_read_set_activation_job.Rd |only man/omics_start_read_set_export_job.Rd |only man/omics_start_read_set_import_job.Rd |only man/omics_start_reference_import_job.Rd |only man/omics_start_run.Rd |only man/omics_start_variant_import_job.Rd |only man/omics_tag_resource.Rd |only man/omics_untag_resource.Rd |only man/omics_update_annotation_store.Rd |only man/omics_update_annotation_store_version.Rd |only man/omics_update_run_group.Rd |only man/omics_update_variant_store.Rd |only man/omics_update_workflow.Rd |only man/omics_upload_read_set_part.Rd |only man/recyclebin.Rd | 42 man/s3.Rd | 208 man/s3_abort_multipart_upload.Rd | 36 man/s3_complete_multipart_upload.Rd | 49 man/s3_copy_object.Rd | 517 + man/s3_create_bucket.Rd | 48 man/s3_create_multipart_upload.Rd | 333 man/s3_create_session.Rd |only man/s3_delete_bucket.Rd | 22 man/s3_delete_bucket_analytics_configuration.Rd | 11 man/s3_delete_bucket_cors.Rd | 10 man/s3_delete_bucket_encryption.Rd | 12 man/s3_delete_bucket_intelligent_tiering_configuration.Rd | 5 man/s3_delete_bucket_inventory_configuration.Rd | 11 man/s3_delete_bucket_lifecycle.Rd | 10 man/s3_delete_bucket_metrics_configuration.Rd | 11 man/s3_delete_bucket_ownership_controls.Rd | 10 man/s3_delete_bucket_policy.Rd | 27 man/s3_delete_bucket_replication.Rd | 10 man/s3_delete_bucket_tagging.Rd | 10 man/s3_delete_bucket_website.Rd | 10 man/s3_delete_object.Rd | 50 man/s3_delete_object_tagging.Rd | 23 man/s3_delete_objects.Rd | 89 man/s3_delete_public_access_block.Rd | 10 man/s3_get_bucket_accelerate_configuration.Rd | 12 man/s3_get_bucket_acl.Rd | 25 man/s3_get_bucket_analytics_configuration.Rd | 11 man/s3_get_bucket_cors.Rd | 25 man/s3_get_bucket_encryption.Rd | 10 man/s3_get_bucket_intelligent_tiering_configuration.Rd | 4 man/s3_get_bucket_inventory_configuration.Rd | 11 man/s3_get_bucket_lifecycle.Rd | 6 man/s3_get_bucket_lifecycle_configuration.Rd | 12 man/s3_get_bucket_location.Rd | 24 man/s3_get_bucket_logging.Rd | 11 man/s3_get_bucket_metrics_configuration.Rd | 11 man/s3_get_bucket_notification.Rd | 24 man/s3_get_bucket_notification_configuration.Rd | 24 man/s3_get_bucket_ownership_controls.Rd | 10 man/s3_get_bucket_policy.Rd | 45 man/s3_get_bucket_policy_status.Rd | 11 man/s3_get_bucket_replication.Rd | 10 man/s3_get_bucket_request_payment.Rd | 10 man/s3_get_bucket_tagging.Rd | 10 man/s3_get_bucket_versioning.Rd | 10 man/s3_get_bucket_website.Rd | 10 man/s3_get_object.Rd | 175 man/s3_get_object_acl.Rd | 21 man/s3_get_object_attributes.Rd | 53 man/s3_get_object_legal_hold.Rd | 17 man/s3_get_object_lock_configuration.Rd | 17 man/s3_get_object_retention.Rd | 17 man/s3_get_object_tagging.Rd | 23 man/s3_get_object_torrent.Rd | 10 man/s3_get_public_access_block.Rd | 10 man/s3_head_bucket.Rd | 51 man/s3_head_object.Rd | 111 man/s3_list_bucket_analytics_configurations.Rd | 10 man/s3_list_bucket_intelligent_tiering_configurations.Rd | 4 man/s3_list_bucket_inventory_configurations.Rd | 10 man/s3_list_bucket_metrics_configurations.Rd | 10 man/s3_list_buckets.Rd | 5 man/s3_list_directory_buckets.Rd |only man/s3_list_multipart_uploads.Rd | 78 man/s3_list_object_versions.Rd | 10 man/s3_list_objects.Rd | 36 man/s3_list_objects_v2.Rd | 72 man/s3_list_parts.Rd | 46 man/s3_put_bucket_accelerate_configuration.Rd | 16 man/s3_put_bucket_acl.Rd | 17 man/s3_put_bucket_analytics_configuration.Rd | 11 man/s3_put_bucket_cors.Rd | 16 man/s3_put_bucket_encryption.Rd | 17 man/s3_put_bucket_intelligent_tiering_configuration.Rd | 4 man/s3_put_bucket_inventory_configuration.Rd | 11 man/s3_put_bucket_lifecycle.Rd | 16 man/s3_put_bucket_lifecycle_configuration.Rd | 17 man/s3_put_bucket_logging.Rd | 17 man/s3_put_bucket_metrics_configuration.Rd | 11 man/s3_put_bucket_notification.Rd | 16 man/s3_put_bucket_notification_configuration.Rd | 10 man/s3_put_bucket_ownership_controls.Rd | 10 man/s3_put_bucket_policy.Rd | 68 man/s3_put_bucket_replication.Rd | 16 man/s3_put_bucket_request_payment.Rd | 16 man/s3_put_bucket_tagging.Rd | 16 man/s3_put_bucket_versioning.Rd | 16 man/s3_put_bucket_website.Rd | 17 man/s3_put_object.Rd | 214 man/s3_put_object_acl.Rd | 64 man/s3_put_object_legal_hold.Rd | 23 man/s3_put_object_lock_configuration.Rd | 16 man/s3_put_object_retention.Rd | 23 man/s3_put_object_tagging.Rd | 29 man/s3_put_public_access_block.Rd | 17 man/s3_restore_object.Rd | 29 man/s3_select_object_content.Rd | 11 man/s3_upload_part.Rd | 56 man/s3_upload_part_copy.Rd | 156 man/s3_write_get_object_response.Rd | 12 man/s3control.Rd | 152 man/s3control_associate_access_grants_identity_center.Rd |only man/s3control_create_access_grant.Rd |only man/s3control_create_access_grants_instance.Rd |only man/s3control_create_access_grants_location.Rd |only man/s3control_create_access_point.Rd | 4 man/s3control_create_access_point_for_object_lambda.Rd | 4 man/s3control_create_job.Rd | 5 man/s3control_create_multi_region_access_point.Rd | 5 man/s3control_create_storage_lens_group.Rd |only man/s3control_delete_access_grant.Rd |only man/s3control_delete_access_grants_instance.Rd |only man/s3control_delete_access_grants_instance_resource_policy.Rd |only man/s3control_delete_access_grants_location.Rd |only man/s3control_delete_access_point.Rd | 4 man/s3control_delete_access_point_for_object_lambda.Rd | 4 man/s3control_delete_access_point_policy.Rd | 4 man/s3control_delete_access_point_policy_for_object_lambda.Rd | 4 man/s3control_delete_job_tagging.Rd | 2 man/s3control_delete_multi_region_access_point.Rd | 4 man/s3control_delete_public_access_block.Rd | 5 man/s3control_delete_storage_lens_configuration.Rd | 4 man/s3control_delete_storage_lens_configuration_tagging.Rd | 4 man/s3control_delete_storage_lens_group.Rd |only man/s3control_describe_multi_region_access_point_operation.Rd | 5 man/s3control_dissociate_access_grants_identity_center.Rd |only man/s3control_get_access_grant.Rd |only man/s3control_get_access_grants_instance.Rd |only man/s3control_get_access_grants_instance_for_prefix.Rd |only man/s3control_get_access_grants_instance_resource_policy.Rd |only man/s3control_get_access_grants_location.Rd |only man/s3control_get_access_point.Rd | 4 man/s3control_get_access_point_configuration_for_object_lambda.Rd | 4 man/s3control_get_access_point_for_object_lambda.Rd | 5 man/s3control_get_access_point_policy.Rd | 5 man/s3control_get_access_point_policy_for_object_lambda.Rd | 4 man/s3control_get_access_point_policy_status.Rd | 5 man/s3control_get_access_point_policy_status_for_object_lambda.Rd | 5 man/s3control_get_data_access.Rd |only man/s3control_get_job_tagging.Rd | 2 man/s3control_get_multi_region_access_point.Rd | 5 man/s3control_get_multi_region_access_point_policy.Rd | 5 man/s3control_get_multi_region_access_point_policy_status.Rd | 5 man/s3control_get_multi_region_access_point_routes.Rd | 5 man/s3control_get_public_access_block.Rd | 5 man/s3control_get_storage_lens_configuration.Rd | 4 man/s3control_get_storage_lens_configuration_tagging.Rd | 4 man/s3control_get_storage_lens_group.Rd |only man/s3control_list_access_grants.Rd |only man/s3control_list_access_grants_instances.Rd |only man/s3control_list_access_grants_locations.Rd |only man/s3control_list_access_points.Rd | 5 man/s3control_list_access_points_for_object_lambda.Rd | 5 man/s3control_list_jobs.Rd | 7 man/s3control_list_multi_region_access_points.Rd | 5 man/s3control_list_regional_buckets.Rd | 5 man/s3control_list_storage_lens_configurations.Rd | 4 man/s3control_list_storage_lens_groups.Rd |only man/s3control_list_tags_for_resource.Rd |only man/s3control_put_access_grants_instance_resource_policy.Rd |only man/s3control_put_access_point_configuration_for_object_lambda.Rd | 4 man/s3control_put_access_point_policy.Rd | 4 man/s3control_put_access_point_policy_for_object_lambda.Rd | 4 man/s3control_put_multi_region_access_point_policy.Rd | 5 man/s3control_put_public_access_block.Rd | 5 man/s3control_put_storage_lens_configuration.Rd | 4 man/s3control_put_storage_lens_configuration_tagging.Rd | 4 man/s3control_submit_multi_region_access_point_routes.Rd | 4 man/s3control_tag_resource.Rd |only man/s3control_untag_resource.Rd |only man/s3control_update_access_grants_location.Rd |only man/s3control_update_job_status.Rd | 2 man/s3control_update_storage_lens_group.Rd |only man/s3outposts.Rd | 38 man/storagegateway.Rd | 42 man/storagegateway_describe_gateway_information.Rd | 5 man/storagegateway_list_file_shares.Rd | 5 man/storagegateway_update_bandwidth_rate_limit_schedule.Rd | 2 tests/testthat/test_backup.R | 32 tests/testthat/test_fsx.R | 4 tests/testthat/test_omics.R |only tests/testthat/test_s3.R | 4 375 files changed, 9798 insertions(+), 3542 deletions(-)
Title: 'Amazon Web Services' Networking & Content Delivery Services
Description: Interface to 'Amazon Web Services' networking and content
delivery services, including 'Route 53' Domain Name System service,
'CloudFront' content delivery, load balancing, and more
<https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.networking versions 0.4.0 dated 2023-09-11 and 0.5.0 dated 2024-01-09
DESCRIPTION | 17 MD5 | 344 +++++++-- NAMESPACE | 4 R/apigateway_service.R | 38 - R/apigatewaymanagementapi_service.R | 38 - R/apigatewayv2_service.R | 38 - R/appfabric_interfaces.R |only R/appfabric_operations.R |only R/appfabric_service.R |only R/appmesh_interfaces.R | 36 - R/appmesh_service.R | 38 - R/arczonalshift_interfaces.R |only R/arczonalshift_operations.R |only R/arczonalshift_service.R |only R/backupgateway_service.R | 38 - R/cloudfront_interfaces.R | 74 +- R/cloudfront_operations.R | 154 ++++ R/cloudfront_service.R | 61 + R/directconnect_service.R | 38 - R/elb_service.R | 38 - R/elbv2_interfaces.R | 134 +++ R/elbv2_operations.R | 350 +++++++++- R/elbv2_service.R | 50 - R/globalaccelerator_interfaces.R | 90 ++ R/globalaccelerator_operations.R | 256 +++++++ R/globalaccelerator_service.R | 47 - R/networkfirewall_interfaces.R | 26 R/networkfirewall_operations.R | 49 - R/networkfirewall_service.R | 38 - R/networkmanager_interfaces.R | 10 R/networkmanager_operations.R | 7 R/networkmanager_service.R | 38 - R/route53_interfaces.R | 2 R/route53_operations.R | 24 R/route53_service.R | 40 - R/route53domains_service.R | 38 - R/route53recoverycluster_interfaces.R | 2 R/route53recoverycluster_operations.R | 8 R/route53recoverycluster_service.R | 44 - R/route53recoverycontrolconfig_interfaces.R | 42 - R/route53recoverycontrolconfig_operations.R | 29 R/route53recoverycontrolconfig_service.R | 39 - R/route53recoveryreadiness_service.R | 38 - R/route53resolver_interfaces.R | 32 R/route53resolver_operations.R | 92 ++ R/route53resolver_service.R | 42 - R/servicediscovery_interfaces.R | 14 R/servicediscovery_operations.R | 40 + R/servicediscovery_service.R | 41 - R/telconetworkbuilder_interfaces.R |only R/telconetworkbuilder_operations.R |only R/telconetworkbuilder_service.R |only R/vpclattice_interfaces.R |only R/vpclattice_operations.R |only R/vpclattice_service.R |only man/apigateway.Rd | 38 - man/apigatewaymanagementapi.Rd | 38 - man/apigatewayv2.Rd | 38 - man/appfabric.Rd |only man/appfabric_batch_get_user_access_tasks.Rd |only man/appfabric_connect_app_authorization.Rd |only man/appfabric_create_app_authorization.Rd |only man/appfabric_create_app_bundle.Rd |only man/appfabric_create_ingestion.Rd |only man/appfabric_create_ingestion_destination.Rd |only man/appfabric_delete_app_authorization.Rd |only man/appfabric_delete_app_bundle.Rd |only man/appfabric_delete_ingestion.Rd |only man/appfabric_delete_ingestion_destination.Rd |only man/appfabric_get_app_authorization.Rd |only man/appfabric_get_app_bundle.Rd |only man/appfabric_get_ingestion.Rd |only man/appfabric_get_ingestion_destination.Rd |only man/appfabric_list_app_authorizations.Rd |only man/appfabric_list_app_bundles.Rd |only man/appfabric_list_ingestion_destinations.Rd |only man/appfabric_list_ingestions.Rd |only man/appfabric_list_tags_for_resource.Rd |only man/appfabric_start_ingestion.Rd |only man/appfabric_start_user_access_tasks.Rd |only man/appfabric_stop_ingestion.Rd |only man/appfabric_tag_resource.Rd |only man/appfabric_untag_resource.Rd |only man/appfabric_update_app_authorization.Rd |only man/appfabric_update_ingestion_destination.Rd |only man/appmesh.Rd | 38 - man/arczonalshift.Rd |only man/arczonalshift_cancel_zonal_shift.Rd |only man/arczonalshift_create_practice_run_configuration.Rd |only man/arczonalshift_delete_practice_run_configuration.Rd |only man/arczonalshift_get_managed_resource.Rd |only man/arczonalshift_list_autoshifts.Rd |only man/arczonalshift_list_managed_resources.Rd |only man/arczonalshift_list_zonal_shifts.Rd |only man/arczonalshift_start_zonal_shift.Rd |only man/arczonalshift_update_practice_run_configuration.Rd |only man/arczonalshift_update_zonal_autoshift_configuration.Rd |only man/arczonalshift_update_zonal_shift.Rd |only man/backupgateway.Rd | 38 - man/cloudfront.Rd | 61 + man/cloudfront_create_key_value_store.Rd |only man/cloudfront_delete_key_value_store.Rd |only man/cloudfront_describe_key_value_store.Rd |only man/cloudfront_list_key_value_stores.Rd |only man/cloudfront_update_key_value_store.Rd |only man/directconnect.Rd | 38 - man/elb.Rd | 38 - man/elbv2.Rd | 50 - man/elbv2_add_tags.Rd | 2 man/elbv2_add_trust_store_revocations.Rd |only man/elbv2_create_listener.Rd | 5 man/elbv2_create_trust_store.Rd |only man/elbv2_delete_trust_store.Rd |only man/elbv2_describe_target_health.Rd | 4 man/elbv2_describe_trust_store_associations.Rd |only man/elbv2_describe_trust_store_revocations.Rd |only man/elbv2_describe_trust_stores.Rd |only man/elbv2_get_trust_store_ca_certificates_bundle.Rd |only man/elbv2_get_trust_store_revocation_content.Rd |only man/elbv2_modify_listener.Rd | 5 man/elbv2_modify_trust_store.Rd |only man/elbv2_remove_trust_store_revocations.Rd |only man/elbv2_set_subnets.Rd | 19 man/globalaccelerator.Rd | 47 - man/globalaccelerator_create_cross_account_attachment.Rd |only man/globalaccelerator_delete_cross_account_attachment.Rd |only man/globalaccelerator_describe_cross_account_attachment.Rd |only man/globalaccelerator_list_cross_account_attachments.Rd |only man/globalaccelerator_list_cross_account_resource_accounts.Rd |only man/globalaccelerator_list_cross_account_resources.Rd |only man/globalaccelerator_update_cross_account_attachment.Rd |only man/networkfirewall.Rd | 38 - man/networkfirewall_create_rule_group.Rd | 9 man/networkfirewall_create_tls_inspection_configuration.Rd | 10 man/networkfirewall_describe_rule_group.Rd | 7 man/networkfirewall_update_rule_group.Rd | 9 man/networkfirewall_update_tls_inspection_configuration.Rd | 10 man/networkmanager.Rd | 38 - man/networkmanager_create_connect_peer.Rd | 9 man/route53.Rd | 40 - man/route53_create_health_check.Rd | 6 man/route53_get_geo_location.Rd | 4 man/route53_list_health_checks.Rd | 6 man/route53_list_hosted_zones.Rd | 5 man/route53_update_traffic_policy_instance.Rd | 7 man/route53domains.Rd | 38 - man/route53recoverycluster.Rd | 44 - man/route53recoverycluster_get_routing_control_state.Rd | 2 man/route53recoverycluster_update_routing_control_state.Rd | 4 man/route53recoverycluster_update_routing_control_states.Rd | 2 man/route53recoverycontrolconfig.Rd | 39 - man/route53recoverycontrolconfig_get_resource_policy.Rd |only man/route53recoveryreadiness.Rd | 38 - man/route53resolver.Rd | 42 - man/route53resolver_create_outpost_resolver.Rd | 4 man/route53resolver_create_resolver_endpoint.Rd | 39 - man/route53resolver_create_resolver_rule.Rd | 4 man/route53resolver_update_resolver_endpoint.Rd | 37 - man/servicediscovery.Rd | 41 - man/servicediscovery_discover_instances.Rd | 2 man/servicediscovery_discover_instances_revision.Rd |only man/servicediscovery_get_operation.Rd | 4 man/servicediscovery_register_instance.Rd | 2 man/telconetworkbuilder.Rd |only man/telconetworkbuilder_cancel_sol_network_operation.Rd |only man/telconetworkbuilder_create_sol_function_package.Rd |only man/telconetworkbuilder_create_sol_network_instance.Rd |only man/telconetworkbuilder_create_sol_network_package.Rd |only man/telconetworkbuilder_delete_sol_function_package.Rd |only man/telconetworkbuilder_delete_sol_network_instance.Rd |only man/telconetworkbuilder_delete_sol_network_package.Rd |only man/telconetworkbuilder_get_sol_function_instance.Rd |only man/telconetworkbuilder_get_sol_function_package.Rd |only man/telconetworkbuilder_get_sol_function_package_content.Rd |only man/telconetworkbuilder_get_sol_function_package_descriptor.Rd |only man/telconetworkbuilder_get_sol_network_instance.Rd |only man/telconetworkbuilder_get_sol_network_operation.Rd |only man/telconetworkbuilder_get_sol_network_package.Rd |only man/telconetworkbuilder_get_sol_network_package_content.Rd |only man/telconetworkbuilder_get_sol_network_package_descriptor.Rd |only man/telconetworkbuilder_instantiate_sol_network_instance.Rd |only man/telconetworkbuilder_list_sol_function_instances.Rd |only man/telconetworkbuilder_list_sol_function_packages.Rd |only man/telconetworkbuilder_list_sol_network_instances.Rd |only man/telconetworkbuilder_list_sol_network_operations.Rd |only man/telconetworkbuilder_list_sol_network_packages.Rd |only man/telconetworkbuilder_list_tags_for_resource.Rd |only man/telconetworkbuilder_put_sol_function_package_content.Rd |only man/telconetworkbuilder_put_sol_network_package_content.Rd |only man/telconetworkbuilder_tag_resource.Rd |only man/telconetworkbuilder_terminate_sol_network_instance.Rd |only man/telconetworkbuilder_untag_resource.Rd |only man/telconetworkbuilder_update_sol_function_package.Rd |only man/telconetworkbuilder_update_sol_network_instance.Rd |only man/telconetworkbuilder_update_sol_network_package.Rd |only man/telconetworkbuilder_validate_sol_function_package_content.Rd |only man/telconetworkbuilder_validate_sol_network_package_content.Rd |only man/vpclattice.Rd |only man/vpclattice_batch_update_rule.Rd |only man/vpclattice_create_access_log_subscription.Rd |only man/vpclattice_create_listener.Rd |only man/vpclattice_create_rule.Rd |only man/vpclattice_create_service.Rd |only man/vpclattice_create_service_network.Rd |only man/vpclattice_create_service_network_service_association.Rd |only man/vpclattice_create_service_network_vpc_association.Rd |only man/vpclattice_create_target_group.Rd |only man/vpclattice_delete_access_log_subscription.Rd |only man/vpclattice_delete_auth_policy.Rd |only man/vpclattice_delete_listener.Rd |only man/vpclattice_delete_resource_policy.Rd |only man/vpclattice_delete_rule.Rd |only man/vpclattice_delete_service.Rd |only man/vpclattice_delete_service_network.Rd |only man/vpclattice_delete_service_network_service_association.Rd |only man/vpclattice_delete_service_network_vpc_association.Rd |only man/vpclattice_delete_target_group.Rd |only man/vpclattice_deregister_targets.Rd |only man/vpclattice_get_access_log_subscription.Rd |only man/vpclattice_get_auth_policy.Rd |only man/vpclattice_get_listener.Rd |only man/vpclattice_get_resource_policy.Rd |only man/vpclattice_get_rule.Rd |only man/vpclattice_get_service.Rd |only man/vpclattice_get_service_network.Rd |only man/vpclattice_get_service_network_service_association.Rd |only man/vpclattice_get_service_network_vpc_association.Rd |only man/vpclattice_get_target_group.Rd |only man/vpclattice_list_access_log_subscriptions.Rd |only man/vpclattice_list_listeners.Rd |only man/vpclattice_list_rules.Rd |only man/vpclattice_list_service_network_service_associations.Rd |only man/vpclattice_list_service_network_vpc_associations.Rd |only man/vpclattice_list_service_networks.Rd |only man/vpclattice_list_services.Rd |only man/vpclattice_list_tags_for_resource.Rd |only man/vpclattice_list_target_groups.Rd |only man/vpclattice_list_targets.Rd |only man/vpclattice_put_auth_policy.Rd |only man/vpclattice_put_resource_policy.Rd |only man/vpclattice_register_targets.Rd |only man/vpclattice_tag_resource.Rd |only man/vpclattice_untag_resource.Rd |only man/vpclattice_update_access_log_subscription.Rd |only man/vpclattice_update_listener.Rd |only man/vpclattice_update_rule.Rd |only man/vpclattice_update_service.Rd |only man/vpclattice_update_service_network.Rd |only man/vpclattice_update_service_network_vpc_association.Rd |only man/vpclattice_update_target_group.Rd |only tests/testthat/test_appfabric.R |only tests/testthat/test_arczonalshift.R |only tests/testthat/test_cloudfront.R | 4 tests/testthat/test_elbv2.R | 4 tests/testthat/test_telconetworkbuilder.R |only tests/testthat/test_vpclattice.R |only 256 files changed, 2580 insertions(+), 1045 deletions(-)
More information about paws.networking at CRAN
Permanent link
Title: Functions to Efficiently Access NFL Play by Play Data
Description: A set of functions to access National Football
League play-by-play data from <https://www.nfl.com/>.
Author: Sebastian Carl [aut],
Ben Baldwin [cre, aut],
Lee Sharpe [ctb],
Maksim Horowitz [ctb],
Ron Yurko [ctb],
Samuel Ventura [ctb],
Tan Ho [ctb],
John Edwards [ctb]
Maintainer: Ben Baldwin <bbaldwin206@gmail.com>
Diff between nflfastR versions 4.6.0 dated 2023-10-20 and 4.6.1 dated 2024-01-09
nflfastR-4.6.0/nflfastR/tests/testthat/setup.R |only nflfastR-4.6.1/nflfastR/DESCRIPTION | 6 nflfastR-4.6.1/nflfastR/LICENSE | 4 nflfastR-4.6.1/nflfastR/MD5 | 138 nflfastR-4.6.1/nflfastR/NAMESPACE | 126 nflfastR-4.6.1/nflfastR/NEWS.md | 1136 ++- nflfastR-4.6.1/nflfastR/R/aggregate_game_stats.R | 1500 ++--- nflfastR-4.6.1/nflfastR/R/aggregate_game_stats_def.R | 1246 ++-- nflfastR-4.6.1/nflfastR/R/aggregate_game_stats_kicking.R | 378 - nflfastR-4.6.1/nflfastR/R/build_nflfastR_pbp.R | 182 nflfastR-4.6.1/nflfastR/R/build_playstats.R |only nflfastR-4.6.1/nflfastR/R/calculate_series_conversion_rates.R | 347 - nflfastR-4.6.1/nflfastR/R/calculate_standings.R | 268 nflfastR-4.6.1/nflfastR/R/data_documentation.R | 128 nflfastR-4.6.1/nflfastR/R/ep_wp_calculators.R | 384 - nflfastR-4.6.1/nflfastR/R/helper_add_cp_cpoe.R | 140 nflfastR-4.6.1/nflfastR/R/helper_add_ep_wp.R | 2860 +++++----- nflfastR-4.6.1/nflfastR/R/helper_add_fixed_drives.R | 286 - nflfastR-4.6.1/nflfastR/R/helper_add_game_data.R | 116 nflfastR-4.6.1/nflfastR/R/helper_add_nflscrapr_mutations.R | 1370 ++-- nflfastR-4.6.1/nflfastR/R/helper_add_series_data.R | 170 nflfastR-4.6.1/nflfastR/R/helper_add_xpass.R | 198 nflfastR-4.6.1/nflfastR/R/helper_add_xyac.R | 412 - nflfastR-4.6.1/nflfastR/R/helper_additional_functions.R | 806 +- nflfastR-4.6.1/nflfastR/R/helper_database_functions.R | 380 - nflfastR-4.6.1/nflfastR/R/helper_decode_player_ids.R | 284 nflfastR-4.6.1/nflfastR/R/helper_get_scheds_and_rosters.R | 28 nflfastR-4.6.1/nflfastR/R/helper_scrape_gc.R | 494 - nflfastR-4.6.1/nflfastR/R/helper_scrape_nfl.R | 812 +- nflfastR-4.6.1/nflfastR/R/helper_tidy_play_stats.R | 2618 ++++----- nflfastR-4.6.1/nflfastR/R/helper_variable_selector.R | 328 - nflfastR-4.6.1/nflfastR/R/load_pbp.R | 24 nflfastR-4.6.1/nflfastR/R/load_player_stats.R | 60 nflfastR-4.6.1/nflfastR/R/nflfastR-package.R | 254 nflfastR-4.6.1/nflfastR/R/report.R | 64 nflfastR-4.6.1/nflfastR/R/save_raw_pbp.R | 308 - nflfastR-4.6.1/nflfastR/R/top-level_scraper.R | 998 +-- nflfastR-4.6.1/nflfastR/R/utils.R | 480 - nflfastR-4.6.1/nflfastR/README.md | 282 nflfastR-4.6.1/nflfastR/man/add_qb_epa.Rd | 42 nflfastR-4.6.1/nflfastR/man/add_xpass.Rd | 56 nflfastR-4.6.1/nflfastR/man/add_xyac.Rd | 60 nflfastR-4.6.1/nflfastR/man/build_nflfastR_pbp.Rd | 152 nflfastR-4.6.1/nflfastR/man/calculate_expected_points.Rd | 140 nflfastR-4.6.1/nflfastR/man/calculate_player_stats.Rd | 220 nflfastR-4.6.1/nflfastR/man/calculate_player_stats_def.Rd | 82 nflfastR-4.6.1/nflfastR/man/calculate_player_stats_kicking.Rd | 74 nflfastR-4.6.1/nflfastR/man/calculate_series_conversion_rates.Rd | 186 nflfastR-4.6.1/nflfastR/man/calculate_standings.Rd | 112 nflfastR-4.6.1/nflfastR/man/calculate_win_probability.Rd | 140 nflfastR-4.6.1/nflfastR/man/clean_pbp.Rd | 124 nflfastR-4.6.1/nflfastR/man/decode_player_ids.Rd | 102 nflfastR-4.6.1/nflfastR/man/fast_scraper.Rd | 848 +- nflfastR-4.6.1/nflfastR/man/fast_scraper_roster.Rd | 80 nflfastR-4.6.1/nflfastR/man/fast_scraper_schedules.Rd | 72 nflfastR-4.6.1/nflfastR/man/field_descriptions.Rd | 52 nflfastR-4.6.1/nflfastR/man/load_pbp.Rd | 82 nflfastR-4.6.1/nflfastR/man/load_player_stats.Rd | 72 nflfastR-4.6.1/nflfastR/man/missing_raw_pbp.Rd | 76 nflfastR-4.6.1/nflfastR/man/nflfastR-package.Rd | 298 - nflfastR-4.6.1/nflfastR/man/report.Rd | 104 nflfastR-4.6.1/nflfastR/man/save_raw_pbp.Rd | 122 nflfastR-4.6.1/nflfastR/man/stat_ids.Rd | 50 nflfastR-4.6.1/nflfastR/man/teams_colors_logos.Rd | 90 nflfastR-4.6.1/nflfastR/man/update_db.Rd | 122 nflfastR-4.6.1/nflfastR/tests/testthat.R | 24 nflfastR-4.6.1/nflfastR/tests/testthat/helpers.R | 118 nflfastR-4.6.1/nflfastR/tests/testthat/test-build_nflfastR_pbp.R | 60 nflfastR-4.6.1/nflfastR/tests/testthat/test-calculate_series_conversion_rates.R | 42 nflfastR-4.6.1/nflfastR/tests/testthat/test-ep_wp_calculators.R | 90 nflfastR-4.6.1/nflfastR/tools/check.env | 12 71 files changed, 11739 insertions(+), 11780 deletions(-)
Title: Interpreted String Literals
Description: An implementation of interpreted string literals, inspired by
Python's Literal String Interpolation
<https://www.python.org/dev/peps/pep-0498/> and Docstrings
<https://www.python.org/dev/peps/pep-0257/> and Julia's Triple-Quoted
String Literals
<https://docs.julialang.org/en/v1.3/manual/strings/#Triple-Quoted-String-Literals-1>.
Author: Jim Hester [aut] ,
Jennifer Bryan [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Jennifer Bryan <jenny@posit.co>
Diff between glue versions 1.6.2 dated 2022-02-24 and 1.7.0 dated 2024-01-09
glue-1.6.2/glue/inst/doc/speed.R |only glue-1.6.2/glue/inst/doc/speed.Rmd |only glue-1.6.2/glue/inst/doc/speed.html |only glue-1.6.2/glue/vignettes/speed.Rmd |only glue-1.7.0/glue/DESCRIPTION | 29 - glue-1.7.0/glue/LICENSE | 2 glue-1.7.0/glue/MD5 | 78 +-- glue-1.7.0/glue/NEWS.md | 24 + glue-1.7.0/glue/R/color.R | 1 glue-1.7.0/glue/R/glue.R | 48 +- glue-1.7.0/glue/R/quoting.R | 4 glue-1.7.0/glue/R/safe.R | 1 glue-1.7.0/glue/R/sql.R | 109 +++- glue-1.7.0/glue/R/transformer.R | 28 + glue-1.7.0/glue/README.md | 26 - glue-1.7.0/glue/build/vignette.rds |binary glue-1.7.0/glue/inst/doc/engines.Rmd | 4 glue-1.7.0/glue/inst/doc/engines.html | 165 +++---- glue-1.7.0/glue/inst/doc/transformers.R | 58 +- glue-1.7.0/glue/inst/doc/transformers.Rmd | 35 + glue-1.7.0/glue/inst/doc/transformers.html | 423 ++++++++++--------- glue-1.7.0/glue/man/as_glue.Rd | 16 glue-1.7.0/glue/man/figures/logo.png |binary glue-1.7.0/glue/man/glue.Rd | 17 glue-1.7.0/glue/man/glue_col.Rd | 20 glue-1.7.0/glue/man/glue_collapse.Rd | 4 glue-1.7.0/glue/man/glue_safe.Rd | 8 glue-1.7.0/glue/man/glue_sql.Rd | 81 +++ glue-1.7.0/glue/man/identity_transformer.Rd | 2 glue-1.7.0/glue/man/quoting.Rd | 9 glue-1.7.0/glue/man/trim.Rd | 3 glue-1.7.0/glue/src/Makevars |only glue-1.7.0/glue/src/glue.c | 2 glue-1.7.0/glue/src/init.c | 6 glue-1.7.0/glue/tests/testthat/_snaps/color.md | 35 - glue-1.7.0/glue/tests/testthat/_snaps/glue.md | 42 + glue-1.7.0/glue/tests/testthat/_snaps/sql.md |only glue-1.7.0/glue/tests/testthat/_snaps/transformer.md |only glue-1.7.0/glue/tests/testthat/test-collapse.R | 6 glue-1.7.0/glue/tests/testthat/test-glue.R | 50 +- glue-1.7.0/glue/tests/testthat/test-sql.R | 38 + glue-1.7.0/glue/tests/testthat/test-transformer.R |only glue-1.7.0/glue/vignettes/engines.Rmd | 4 glue-1.7.0/glue/vignettes/transformers.Rmd | 35 + 44 files changed, 921 insertions(+), 492 deletions(-)
Title: Bayesian Network Structure Learning from Data with Missing
Values
Description: Bayesian Network Structure Learning from Data with Missing Values.
The package implements the Silander-Myllymaki complete search,
the Max-Min Parents-and-Children, the Hill-Climbing, the
Max-Min Hill-climbing heuristic searches, and the Structural
Expectation-Maximization algorithm. Available scoring functions are
BDeu, AIC, BIC. The package also implements methods for generating and using
bootstrap samples, imputed data, inference.
Author: Francesco Sambo [aut],
Alberto Franzin [aut, cre]
Maintainer: Alberto Franzin <afranzin@ulb.ac.be>
Diff between bnstruct versions 1.0.13 dated 2022-11-30 and 1.0.15 dated 2024-01-09
bnstruct-1.0.13/bnstruct/inst/doc/bnstruct.R |only bnstruct-1.0.15/bnstruct/DESCRIPTION | 10 bnstruct-1.0.15/bnstruct/MD5 | 54 bnstruct-1.0.15/bnstruct/NEWS.md | 10 bnstruct-1.0.15/bnstruct/R/AllGenerics.R | 10 bnstruct-1.0.15/bnstruct/R/BN-methods.R | 2 bnstruct-1.0.15/bnstruct/R/InferenceEngine-methods.R | 14 bnstruct-1.0.15/bnstruct/R/beliefPropagation-methods.R | 18 bnstruct-1.0.15/bnstruct/R/buildJunctionTree-methods.R | 11 bnstruct-1.0.15/bnstruct/R/em.R | 12 bnstruct-1.0.15/bnstruct/R/io-methods.R | 25 bnstruct-1.0.15/bnstruct/R/sm.R | 14 bnstruct-1.0.15/bnstruct/build/vignette.rds |binary bnstruct-1.0.15/bnstruct/inst/CITATION | 29 bnstruct-1.0.15/bnstruct/inst/doc/bnstruct.Rnw | 1000 ------------- bnstruct-1.0.15/bnstruct/inst/doc/bnstruct.pdf |binary bnstruct-1.0.15/bnstruct/man/InferenceEngine-class.Rd | 4 bnstruct-1.0.15/bnstruct/man/add.observations-set.Rd | 2 bnstruct-1.0.15/bnstruct/man/interventions-set.Rd | 2 bnstruct-1.0.15/bnstruct/man/interventions.Rd | 2 bnstruct-1.0.15/bnstruct/man/observations-set.Rd | 2 bnstruct-1.0.15/bnstruct/man/observations.Rd | 2 bnstruct-1.0.15/bnstruct/src/smfast.c | 2 bnstruct-1.0.15/bnstruct/src/util.c | 4 bnstruct-1.0.15/bnstruct/tests/testthat/test_em.R | 1 bnstruct-1.0.15/bnstruct/tests/testthat/test_em_contdata.R | 1 bnstruct-1.0.15/bnstruct/tests/testthat/test_sl.R | 1 bnstruct-1.0.15/bnstruct/vignettes/bnstruct-static.pdf |only bnstruct-1.0.15/bnstruct/vignettes/bnstruct.Rnw | 1000 ------------- 29 files changed, 126 insertions(+), 2106 deletions(-)
Title: Bayesian Additive Regression Trees
Description: Bayesian Additive Regression Trees (BART) provide flexible nonparametric modeling of covariates for continuous, binary, categorical and time-to-event outcomes. For more information see Sparapani, Spanbauer and McCulloch <doi:10.18637/jss.v097.i01>.
Author: Robert McCulloch [aut],
Rodney Sparapani [aut, cre],
Robert Gramacy [ctb],
Matthew Pratola [ctb],
Charles Spanbauer [ctb],
Martyn Plummer [ctb],
Nicky Best [ctb],
Kate Cowles [ctb],
Karen Vines [ctb]
Maintainer: Rodney Sparapani <rsparapa@mcw.edu>
Diff between BART versions 2.9.4 dated 2023-03-25 and 2.9.6 dated 2024-01-09
DESCRIPTION | 22 +++++++++--------- MD5 | 48 ++++++++++++++++++++-------------------- NEWS | 6 +++-- configure | 4 +-- demo/boston.R | 2 - inst/cxx-ex/cpbart.cpp | 6 ++--- inst/cxx-ex/cwbart.cpp | 6 ++--- inst/doc/the-BART-R-package.pdf |binary man/abart.Rd | 7 ++--- man/gbart.Rd | 9 +++---- man/lbart.Rd | 1 man/leukemia.Rd | 2 - man/mbart.Rd | 5 ++-- man/mbart2.Rd | 5 ++-- man/mc.lbart.Rd | 1 man/mc.wbart.Rd | 1 man/wbart.Rd | 1 man/xdm20.test.Rd | 4 +-- man/xdm20.train.Rd | 4 +-- man/ydm20.train.Rd | 4 +-- src/Makevars.win | 2 + src/cabart.cpp | 8 +++--- src/cgbart.cpp | 8 +++--- src/cpbart.cpp | 6 ++--- src/cwbart.cpp | 6 ++--- 25 files changed, 84 insertions(+), 84 deletions(-)
Title: Non-Interactive Spatial Tools for Raster Processing and
Visualization
Description: S3 classes and methods for manipulation with georeferenced raster data: reading/writing, processing, multi-panel visualization.
Author: Nikita Platonov [aut, cre]
Maintainer: Nikita Platonov <platonov@sevin.ru>
Diff between ursa versions 3.10.3 dated 2023-12-20 and 3.10.4 dated 2024-01-09
DESCRIPTION | 8 - MD5 | 44 ++++---- NAMESPACE | 3 NEWS.md | 17 +++ R/conn.open_gdal.R | 2 R/conn.read_gdal.R | 2 R/conn.write_gdal.R | 44 ++++++-- R/glance.R | 44 ++++++-- R/package_sf.R | 7 + R/panel_coastline.R | 46 ++++++++- R/ursa_as.R | 7 + R/whiteboxing.R |only R/xxx.gdalwarp.R | 3 R/xxx.geomap.R | 225 ++++++++++++++++++++++++++++++++------------- R/xxx.panel_basemap.R | 29 ++++- R/xxx.spatialize.R | 28 ++++- R/yyy.RogerBivand.R | 1 R/yyy.cache.R | 48 +++++++++ R/yyy.project.R | 13 ++ R/yyy.tile.R | 53 +++++++--- R/zzz.R | 1 inst/requisite/coast-l.rds |binary man/glance.Rd | 21 ++-- man/whiteboxing.Rd |only 24 files changed, 488 insertions(+), 158 deletions(-)
Title: Information Analysis for Test and Rating Scale Data
Description: Develop, evaluate, and score multiple choice examinations,
psychological scales, questionnaires, and similar types of data involving
sequences of choices among one or more sets of answers.
This version of the package should be considered as brand new. Almost all
of the functions have been changed, including their argument list.
See the file NEWS.Rd in the Inst folder for more information.
Using the package does not require any formal statistical knowledge
beyond what would be provided by a first course in statistics in a
social science department. There the user would encounter the concept
of probability and how it is used to model data and make decisions,
and would become familiar with basic mathematical and statistical notation.
Most of the output is in graphical form.
Author: James Ramsay [aut, cre],
Juan Li [ctb],
Marie Wiberg [ctb],
Joakim Wallmark [ctb],
Spencer Graves [ctb]
Maintainer: James Ramsay <james.ramsay@mcgill.ca>
Diff between TestGardener versions 3.3.0 dated 2023-11-28 and 3.3.1 dated 2024-01-09
DESCRIPTION | 24 - MD5 | 86 +++--- NAMESPACE | 6 R/Analyze.R | 222 +++++++++++---- R/DFfun.R | 51 +-- R/Fcurve.R | 30 +- R/Ffun.R | 27 - R/ICC.R |only R/ICC_plot.R | 39 +- R/Sbinsmth.R | 503 +++++++++++++++++++++++------------- R/Spca.R | 9 R/TG_analysis.R | 58 ++-- R/TG_density.fd.R | 98 ++----- R/chcemat_simulate.R | 2 R/density_plot.R | 3 R/eval.surp.R | 19 - R/index2info.R | 29 +- R/index_distn.R | 22 - R/index_fun.R | 5 R/index_search.R | 2 R/make_dataList.R | 298 +++++++++++++++------ R/mu.R | 3 R/scorePerformance.R | 26 - R/smooth.ICC.R | 14 - R/smooth.surp.R | 66 +--- R/surprisal.curve.R | 2 README.md | 7 data/Quant_13B_problem_dataList.rda |binary data/Quant_13B_problem_infoList.rda |binary data/Quant_13B_problem_parmList.rda |binary inst/NEWS.Rd | 14 + man/Analyze.Rd | 2 man/ICC.Rd |only man/ICC_plot.Rd | 1 man/Quant_13B_problem_dataList.Rd | 39 +- man/Sbinsmth.Rd | 52 +-- man/Spca.Rd | 12 man/TG_analysis.Rd | 35 +- man/TG_density.fd.Rd | 6 man/density_plot.Rd | 6 man/eval.surp.Rd | 11 man/index_distn.Rd | 25 - man/make_dataList.Rd | 18 - man/scorePerformance.Rd | 2 man/smooth.surp.Rd | 45 +-- 45 files changed, 1138 insertions(+), 781 deletions(-)
Title: Interface to 'Python' Package 'StepMix'
Description: This is an interface for the 'Python' package
'StepMix'. It is a 'Python' package following the scikit-learn API for
model-based clustering and generalized mixture modeling (latent class/profile
analysis) of continuous and categorical data. 'StepMix' handles missing values
through Full Information Maximum Likelihood (FIML) and provides multiple stepwise
Expectation-Maximization (EM) estimation methods based on pseudolikelihood
theory. Additional features include support for covariates and distal outcomes,
various simulation utilities, and non-parametric bootstrapping, which allows
inference in semi-supervised and unsupervised settings.
Author: Éric Lacourse [aut],
Roxane de la Sablonniere [aut],
Charles-Édouard Giguere [aut, cre],
Sacha Morin [aut],
Robin Legault [aut],
Felix Laliberte [aut],
Zsusza Bakk [ctb]
Maintainer: Charles-Édouard Giguere <ce.giguere@gmail.com>
Diff between stepmixr versions 0.1.1 dated 2023-03-22 and 0.1.2 dated 2024-01-09
DESCRIPTION | 10 - MD5 | 22 +- NAMESPACE | 19 + R/stepmix.R | 477 +++++++++++++++++++++++++++++------------------- man/Datasets.Rd | 7 man/bootstrap.Rd |only man/bootstrap_stats.Rd |only man/fit.Rd | 11 - man/install.stepmix.Rd | 1 man/mixed_descriptor.Rd | 5 man/predict.Rd | 13 - man/savefit.Rd | 5 man/stepmix.Rd | 12 - 13 files changed, 352 insertions(+), 230 deletions(-)
Title: Penalized Parametric and Semiparametric Bayesian Survival Models
with Shrinkage and Grouping Priors
Description: Algorithms to implement various Bayesian penalized survival regression models including: semiparametric proportional hazards models with lasso priors (Lee et al., Int J Biostat, 2011 <doi:10.2202/1557-4679.1301>) and three other shrinkage and group priors (Lee et al., Stat Anal Data Min, 2015 <doi:10.1002/sam.11266>); parametric accelerated failure time models with group/ordinary lasso prior (Lee et al. Comput Stat Data Anal, 2017 <doi:10.1016/j.csda.2017.02.014>).
Author: Kyu Ha Lee, Sounak Chakraborty, Harrison Reeder, Jianguo Sun
Maintainer: Kyu Ha Lee <klee@hsph.harvard.edu>
Diff between psbcGroup versions 1.5 dated 2021-06-24 and 1.7 dated 2024-01-09
psbcGroup-1.5/psbcGroup/src/aftGL_Utilities.c |only psbcGroup-1.7/psbcGroup/DESCRIPTION | 12 +++++------ psbcGroup-1.7/psbcGroup/MD5 | 27 +++++++++++++++---------- psbcGroup-1.7/psbcGroup/NAMESPACE | 1 psbcGroup-1.7/psbcGroup/R/VS.R | 9 ++++---- psbcGroup-1.7/psbcGroup/R/aftGL_LT.R |only psbcGroup-1.7/psbcGroup/R/bic4.R | 2 - psbcGroup-1.7/psbcGroup/data |only psbcGroup-1.7/psbcGroup/man/aftGL.Rd | 2 - psbcGroup-1.7/psbcGroup/man/aftGL_LT.Rd |only psbcGroup-1.7/psbcGroup/man/psbcEN.Rd | 2 - psbcGroup-1.7/psbcGroup/man/psbcFL.Rd | 2 - psbcGroup-1.7/psbcGroup/man/psbcGL.Rd | 2 - psbcGroup-1.7/psbcGroup/man/psbcGroup.Rd | 10 ++++++--- psbcGroup-1.7/psbcGroup/man/survData.Rd |only psbcGroup-1.7/psbcGroup/src/BAFTgpLT.c |only psbcGroup-1.7/psbcGroup/src/BAFTgpLT.h |only psbcGroup-1.7/psbcGroup/src/BAFTgpLT_Updates.c |only psbcGroup-1.7/psbcGroup/src/Utilities.c |only 19 files changed, 41 insertions(+), 28 deletions(-)
Title: 'Amazon Web Services' Machine Learning Services
Description: Interface to 'Amazon Web Services' machine learning services,
including 'SageMaker' managed machine learning service, natural
language processing, speech recognition, translation, and more
<https://aws.amazon.com/machine-learning/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.machine.learning versions 0.4.0 dated 2023-09-11 and 0.5.0 dated 2024-01-09
DESCRIPTION | 24 MD5 | 485 +++--- NAMESPACE | 4 R/augmentedairuntime_service.R | 38 R/bedrock_interfaces.R |only R/bedrock_operations.R |only R/bedrock_service.R |only R/bedrockruntime_interfaces.R |only R/bedrockruntime_operations.R |only R/bedrockruntime_service.R |only R/comprehend_interfaces.R | 12 R/comprehend_operations.R | 95 - R/comprehend_service.R | 43 R/comprehendmedical_service.R | 38 R/elasticinference_service.R | 38 R/forecastqueryservice_service.R | 38 R/forecastservice_service.R | 38 R/frauddetector_service.R | 38 R/lexmodelbuildingservice_service.R | 38 R/lexmodelsv2_interfaces.R | 78 R/lexmodelsv2_operations.R | 160 +- R/lexmodelsv2_service.R | 44 R/lexruntimeservice_service.R | 38 R/lexruntimev2_interfaces.R | 4 R/lexruntimev2_service.R | 38 R/lookoutequipment_interfaces.R | 100 + R/lookoutequipment_operations.R | 362 ++++ R/lookoutequipment_service.R | 63 R/lookoutmetrics_service.R | 38 R/machinelearning_interfaces.R | 4 R/machinelearning_service.R | 38 R/panorama_service.R | 38 R/personalize_interfaces.R | 22 R/personalize_operations.R | 56 R/personalize_service.R | 42 R/personalizeevents_interfaces.R | 20 R/personalizeevents_operations.R | 77 R/personalizeevents_service.R | 49 R/personalizeruntime_interfaces.R | 20 R/personalizeruntime_operations.R | 89 + R/personalizeruntime_service.R | 41 R/polly_operations.R | 34 R/polly_service.R | 38 R/rekognition_interfaces.R | 50 R/rekognition_operations.R | 297 ++- R/rekognition_service.R | 81 - R/sagemaker_interfaces.R | 292 ++- R/sagemaker_operations.R | 792 ++++++++-- R/sagemaker_service.R | 62 R/sagemakeredgemanager_service.R | 38 R/sagemakerfeaturestoreruntime_interfaces.R | 6 R/sagemakerfeaturestoreruntime_service.R | 38 R/sagemakergeospatialcapabilities_interfaces.R |only R/sagemakergeospatialcapabilities_operations.R |only R/sagemakergeospatialcapabilities_service.R |only R/sagemakermetrics_interfaces.R |only R/sagemakermetrics_operations.R |only R/sagemakermetrics_service.R |only R/sagemakerruntime_interfaces.R | 4 R/sagemakerruntime_operations.R | 13 R/sagemakerruntime_service.R | 38 R/textract_interfaces.R | 148 + R/textract_operations.R | 426 +++++ R/textract_service.R | 52 R/transcribeservice_interfaces.R | 52 R/transcribeservice_operations.R | 281 +++ R/transcribeservice_service.R | 42 R/translate_interfaces.R | 14 R/translate_operations.R | 54 R/translate_service.R | 38 R/voiceid_service.R | 38 man/augmentedairuntime.Rd | 38 man/bedrock.Rd |only man/bedrock_create_model_customization_job.Rd |only man/bedrock_create_provisioned_model_throughput.Rd |only man/bedrock_delete_custom_model.Rd |only man/bedrock_delete_model_invocation_logging_configuration.Rd |only man/bedrock_delete_provisioned_model_throughput.Rd |only man/bedrock_get_custom_model.Rd |only man/bedrock_get_foundation_model.Rd |only man/bedrock_get_model_customization_job.Rd |only man/bedrock_get_model_invocation_logging_configuration.Rd |only man/bedrock_get_provisioned_model_throughput.Rd |only man/bedrock_list_custom_models.Rd |only man/bedrock_list_foundation_models.Rd |only man/bedrock_list_model_customization_jobs.Rd |only man/bedrock_list_provisioned_model_throughputs.Rd |only man/bedrock_list_tags_for_resource.Rd |only man/bedrock_put_model_invocation_logging_configuration.Rd |only man/bedrock_stop_model_customization_job.Rd |only man/bedrock_tag_resource.Rd |only man/bedrock_untag_resource.Rd |only man/bedrock_update_provisioned_model_throughput.Rd |only man/bedrockruntime.Rd |only man/bedrockruntime_invoke_model.Rd |only man/bedrockruntime_invoke_model_with_response_stream.Rd |only man/comprehend.Rd | 43 man/comprehend_classify_document.Rd | 29 man/comprehend_create_document_classifier.Rd | 13 man/comprehend_create_flywheel.Rd | 9 man/comprehend_detect_toxic_content.Rd |only man/comprehend_start_document_classification_job.Rd | 5 man/comprehend_start_targeted_sentiment_detection_job.Rd | 2 man/comprehendmedical.Rd | 38 man/elasticinference.Rd | 38 man/forecastqueryservice.Rd | 38 man/forecastservice.Rd | 38 man/frauddetector.Rd | 38 man/lexmodelbuildingservice.Rd | 38 man/lexmodelsv2.Rd | 44 man/lexmodelsv2_create_bot_locale.Rd | 5 man/lexmodelsv2_create_bot_version.Rd | 4 man/lexmodelsv2_describe_bot_resource_generation.Rd |only man/lexmodelsv2_generate_bot_element.Rd |only man/lexmodelsv2_list_bot_resource_generations.Rd |only man/lexmodelsv2_start_bot_resource_generation.Rd |only man/lexmodelsv2_update_bot_locale.Rd | 8 man/lexruntimeservice.Rd | 38 man/lexruntimev2.Rd | 38 man/lookoutequipment.Rd | 63 man/lookoutequipment_create_inference_scheduler.Rd | 4 man/lookoutequipment_create_model.Rd | 26 man/lookoutequipment_create_retraining_scheduler.Rd |only man/lookoutequipment_delete_inference_scheduler.Rd | 2 man/lookoutequipment_delete_model.Rd | 7 man/lookoutequipment_delete_retraining_scheduler.Rd |only man/lookoutequipment_describe_model.Rd | 10 man/lookoutequipment_describe_retraining_scheduler.Rd |only man/lookoutequipment_import_model_version.Rd | 13 man/lookoutequipment_list_inference_schedulers.Rd | 3 man/lookoutequipment_list_models.Rd | 11 man/lookoutequipment_list_retraining_schedulers.Rd |only man/lookoutequipment_start_retraining_scheduler.Rd |only man/lookoutequipment_stop_retraining_scheduler.Rd |only man/lookoutequipment_update_model.Rd |only man/lookoutequipment_update_retraining_scheduler.Rd |only man/lookoutmetrics.Rd | 38 man/machinelearning.Rd | 38 man/panorama.Rd | 38 man/personalize.Rd | 42 man/personalize_create_batch_inference_job.Rd | 19 man/personalize_create_dataset.Rd | 2 man/personalize_create_solution_version.Rd | 20 man/personalize_delete_event_tracker.Rd | 2 man/personalize_list_datasets.Rd | 4 man/personalize_update_campaign.Rd | 7 man/personalizeevents.Rd | 46 man/personalizeevents_put_action_interactions.Rd |only man/personalizeevents_put_actions.Rd |only man/personalizeevents_put_events.Rd | 6 man/personalizeevents_put_items.Rd | 2 man/personalizeevents_put_users.Rd | 2 man/personalizeruntime.Rd | 41 man/personalizeruntime_get_action_recommendations.Rd |only man/personalizeruntime_get_personalized_ranking.Rd | 14 man/personalizeruntime_get_recommendations.Rd | 16 man/polly.Rd | 38 man/polly_describe_voices.Rd | 4 man/polly_start_speech_synthesis_task.Rd | 10 man/polly_synthesize_speech.Rd | 20 man/rekognition.Rd | 81 - man/rekognition_copy_project_version.Rd | 5 man/rekognition_create_dataset.Rd | 4 man/rekognition_create_project.Rd | 13 man/rekognition_create_project_version.Rd | 47 man/rekognition_delete_dataset.Rd | 4 man/rekognition_delete_project.Rd | 4 man/rekognition_delete_project_policy.Rd | 4 man/rekognition_delete_project_version.Rd | 7 man/rekognition_describe_dataset.Rd | 4 man/rekognition_describe_project_versions.Rd | 25 man/rekognition_describe_projects.Rd | 21 man/rekognition_detect_custom_labels.Rd | 10 man/rekognition_detect_moderation_labels.Rd | 7 man/rekognition_distribute_dataset_entries.Rd | 5 man/rekognition_get_media_analysis_job.Rd |only man/rekognition_list_dataset_entries.Rd | 4 man/rekognition_list_dataset_labels.Rd | 4 man/rekognition_list_media_analysis_jobs.Rd |only man/rekognition_list_project_policies.Rd | 4 man/rekognition_put_project_policy.Rd | 5 man/rekognition_start_media_analysis_job.Rd |only man/rekognition_start_project_version.Rd | 8 man/rekognition_stop_project_version.Rd | 6 man/rekognition_update_dataset_entries.Rd | 4 man/sagemaker.Rd | 62 man/sagemaker_create_app.Rd | 12 man/sagemaker_create_app_image_config.Rd | 7 man/sagemaker_create_auto_ml_job_v2.Rd | 19 man/sagemaker_create_cluster.Rd |only man/sagemaker_create_domain.Rd | 19 man/sagemaker_create_endpoint_config.Rd | 18 man/sagemaker_create_flow_definition.Rd | 4 man/sagemaker_create_inference_component.Rd |only man/sagemaker_create_model.Rd | 4 man/sagemaker_create_model_package.Rd | 23 man/sagemaker_create_presigned_domain_url.Rd | 25 man/sagemaker_create_space.Rd | 16 man/sagemaker_create_studio_lifecycle_config.Rd | 11 man/sagemaker_create_training_job.Rd | 10 man/sagemaker_create_user_profile.Rd | 2 man/sagemaker_delete_app.Rd | 10 man/sagemaker_delete_cluster.Rd |only man/sagemaker_delete_compilation_job.Rd |only man/sagemaker_delete_inference_component.Rd |only man/sagemaker_delete_studio_lifecycle_config.Rd | 7 man/sagemaker_describe_app.Rd | 8 man/sagemaker_describe_cluster.Rd |only man/sagemaker_describe_cluster_node.Rd |only man/sagemaker_describe_inference_component.Rd |only man/sagemaker_describe_studio_lifecycle_config.Rd | 7 man/sagemaker_list_cluster_nodes.Rd |only man/sagemaker_list_clusters.Rd |only man/sagemaker_list_data_quality_job_definitions.Rd | 3 man/sagemaker_list_inference_components.Rd |only man/sagemaker_list_model_quality_job_definitions.Rd | 3 man/sagemaker_list_monitoring_executions.Rd | 4 man/sagemaker_list_monitoring_schedules.Rd | 4 man/sagemaker_list_studio_lifecycle_configs.Rd | 6 man/sagemaker_search.Rd | 6 man/sagemaker_update_app_image_config.Rd | 5 man/sagemaker_update_cluster.Rd |only man/sagemaker_update_domain.Rd | 29 man/sagemaker_update_inference_component.Rd |only man/sagemaker_update_inference_component_runtime_config.Rd |only man/sagemaker_update_space.Rd | 9 man/sagemaker_update_training_job.Rd | 8 man/sagemakeredgemanager.Rd | 38 man/sagemakerfeaturestoreruntime.Rd | 38 man/sagemakergeospatialcapabilities.Rd |only man/sagemakergeospatialcapabilities_delete_earth_observation_job.Rd |only man/sagemakergeospatialcapabilities_delete_vector_enrichment_job.Rd |only man/sagemakergeospatialcapabilities_export_earth_observation_job.Rd |only man/sagemakergeospatialcapabilities_export_vector_enrichment_job.Rd |only man/sagemakergeospatialcapabilities_get_earth_observation_job.Rd |only man/sagemakergeospatialcapabilities_get_raster_data_collection.Rd |only man/sagemakergeospatialcapabilities_get_tile.Rd |only man/sagemakergeospatialcapabilities_get_vector_enrichment_job.Rd |only man/sagemakergeospatialcapabilities_list_earth_observation_jobs.Rd |only man/sagemakergeospatialcapabilities_list_raster_data_collections.Rd |only man/sagemakergeospatialcapabilities_list_tags_for_resource.Rd |only man/sagemakergeospatialcapabilities_list_vector_enrichment_jobs.Rd |only man/sagemakergeospatialcapabilities_sea_ras_dat_col.Rd |only man/sagemakergeospatialcapabilities_start_earth_observation_job.Rd |only man/sagemakergeospatialcapabilities_start_vector_enrichment_job.Rd |only man/sagemakergeospatialcapabilities_stop_earth_observation_job.Rd |only man/sagemakergeospatialcapabilities_stop_vector_enrichment_job.Rd |only man/sagemakergeospatialcapabilities_tag_resource.Rd |only man/sagemakergeospatialcapabilities_untag_resource.Rd |only man/sagemakermetrics.Rd |only man/sagemakermetrics_batch_put_metrics.Rd |only man/sagemakerruntime.Rd | 38 man/sagemakerruntime_invoke_endpoint.Rd | 6 man/sagemakerruntime_invoke_endpoint_with_response_stream.Rd | 7 man/textract.Rd | 52 man/textract_analyze_document.Rd | 15 man/textract_create_adapter.Rd |only man/textract_create_adapter_version.Rd |only man/textract_delete_adapter.Rd |only man/textract_delete_adapter_version.Rd |only man/textract_get_adapter.Rd |only man/textract_get_adapter_version.Rd |only man/textract_list_adapter_versions.Rd |only man/textract_list_adapters.Rd |only man/textract_list_tags_for_resource.Rd |only man/textract_start_document_analysis.Rd | 5 man/textract_tag_resource.Rd |only man/textract_untag_resource.Rd |only man/textract_update_adapter.Rd |only man/transcribeservice.Rd | 42 man/transcribeservice_delete_medical_scribe_job.Rd |only man/transcribeservice_get_medical_scribe_job.Rd |only man/transcribeservice_list_call_analytics_categories.Rd | 2 man/transcribeservice_list_call_analytics_jobs.Rd | 4 man/transcribeservice_list_language_models.Rd | 4 man/transcribeservice_list_medical_scribe_jobs.Rd |only man/transcribeservice_list_medical_transcription_jobs.Rd | 4 man/transcribeservice_list_medical_vocabularies.Rd | 6 man/transcribeservice_list_transcription_jobs.Rd | 4 man/transcribeservice_list_vocabularies.Rd | 4 man/transcribeservice_list_vocabulary_filters.Rd | 2 man/transcribeservice_start_call_analytics_job.Rd | 6 man/transcribeservice_start_medical_scribe_job.Rd |only man/transcribeservice_start_medical_transcription_job.Rd | 4 man/transcribeservice_start_transcription_job.Rd | 22 man/translate.Rd | 38 man/translate_start_text_translation_job.Rd | 11 man/translate_translate_document.Rd | 27 man/translate_translate_text.Rd | 12 man/voiceid.Rd | 38 tests/testthat/test_bedrock.R |only tests/testthat/test_bedrockruntime.R |only tests/testthat/test_lookoutequipment.R | 8 tests/testthat/test_rekognition.R | 8 tests/testthat/test_sagemaker.R | 16 tests/testthat/test_sagemakergeospatialcapabilities.R |only tests/testthat/test_sagemakermetrics.R |only tests/testthat/test_textract.R | 14 tests/testthat/test_transcribeservice.R | 8 299 files changed, 5325 insertions(+), 2105 deletions(-)
More information about paws.machine.learning at CRAN
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Title: 'Amazon Web Services' End User Computing Services
Description: Interface to 'Amazon Web Services' end user computing
services, including collaborative document editing, mobile intranet,
and more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.end.user.computing versions 0.4.0 dated 2023-09-11 and 0.5.0 dated 2024-01-09
DESCRIPTION | 6 MD5 | 130 ++-- R/appstream_interfaces.R | 24 R/appstream_operations.R | 19 R/appstream_service.R | 38 - R/ivschat_interfaces.R | 20 R/ivschat_service.R | 38 - R/nimblestudio_service.R | 38 - R/workdocs_service.R | 38 - R/worklink_service.R | 38 - R/workmail_interfaces.R | 74 ++ R/workmail_operations.R | 522 ++++++++++++++++++- R/workmail_service.R | 44 - R/workmailmessageflow_service.R | 38 - R/workspaces_interfaces.R | 110 +++- R/workspaces_operations.R | 263 +++++++++ R/workspaces_service.R | 46 - R/workspacesweb_service.R | 38 - man/appstream.Rd | 38 - man/appstream_create_fleet.Rd | 8 man/appstream_describe_sessions.Rd | 5 man/appstream_update_fleet.Rd | 6 man/ivschat.Rd | 38 - man/nimblestudio.Rd | 38 - man/workdocs.Rd | 38 - man/worklink.Rd | 38 - man/workmail.Rd | 44 - man/workmail_associate_delegate_to_resource.Rd | 21 man/workmail_associate_member_to_group.Rd | 22 man/workmail_create_group.Rd | 5 man/workmail_create_resource.Rd | 13 man/workmail_create_user.Rd | 26 man/workmail_delete_group.Rd | 10 man/workmail_delete_mailbox_permissions.Rd | 25 man/workmail_delete_organization.Rd | 6 man/workmail_delete_resource.Rd | 9 man/workmail_delete_user.Rd | 10 man/workmail_deregister_from_work_mail.Rd | 12 man/workmail_describe_entity.Rd |only man/workmail_describe_group.Rd | 11 man/workmail_describe_resource.Rd | 10 man/workmail_describe_user.Rd | 11 man/workmail_disassociate_delegate_from_resource.Rd | 21 man/workmail_disassociate_member_from_group.Rd | 22 man/workmail_get_mailbox_details.Rd | 11 man/workmail_list_group_members.Rd | 11 man/workmail_list_groups.Rd | 10 man/workmail_list_groups_for_entity.Rd |only man/workmail_list_mailbox_permissions.Rd | 13 man/workmail_list_resource_delegates.Rd | 10 man/workmail_list_resources.Rd | 10 man/workmail_list_users.Rd | 10 man/workmail_put_mailbox_permissions.Rd | 26 man/workmail_register_to_work_mail.Rd | 12 man/workmail_start_mailbox_export_job.Rd | 12 man/workmail_update_group.Rd |only man/workmail_update_mailbox_quota.Rd | 11 man/workmail_update_primary_email_address.Rd | 13 man/workmail_update_resource.Rd | 21 man/workmail_update_user.Rd |only man/workmailmessageflow.Rd | 38 - man/workspaces.Rd | 46 - man/workspaces_associate_workspace_application.Rd |only man/workspaces_deploy_workspace_applications.Rd |only man/workspaces_describe_application_associations.Rd |only man/workspaces_describe_applications.Rd |only man/workspaces_describe_bundle_associations.Rd |only man/workspaces_describe_image_associations.Rd |only man/workspaces_describe_workspace_associations.Rd |only man/workspaces_disassociate_workspace_application.Rd |only man/workspaces_modify_workspace_properties.Rd | 10 man/workspacesweb.Rd | 38 - 72 files changed, 1784 insertions(+), 529 deletions(-)
More information about paws.end.user.computing at CRAN
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Title: 'Amazon Web Services' Developer Tools Services
Description: Interface to 'Amazon Web Services' developer tools services,
including version control, continuous integration and deployment, and
more <https://aws.amazon.com/products/developer-tools/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.developer.tools versions 0.4.0 dated 2023-09-11 and 0.5.0 dated 2024-01-09
DESCRIPTION | 23 MD5 | 296 ++++--- NAMESPACE | 2 R/cloud9_operations.R | 46 - R/cloud9_service.R | 39 R/cloudcontrolapi_service.R | 38 R/codeartifact_service.R | 38 R/codebuild_service.R | 38 R/codecatalyst_interfaces.R |only R/codecatalyst_operations.R |only R/codecatalyst_service.R |only R/codecommit_interfaces.R | 20 R/codecommit_operations.R | 48 + R/codecommit_service.R | 43 - R/codedeploy_interfaces.R | 16 R/codedeploy_operations.R | 162 ++- R/codedeploy_service.R | 46 - R/codeguruprofiler_service.R | 38 R/codegurureviewer_service.R | 38 R/codegurusecurity_interfaces.R |only R/codegurusecurity_operations.R |only R/codegurusecurity_service.R |only R/codepipeline_interfaces.R | 16 R/codepipeline_operations.R | 20 R/codepipeline_service.R | 40 R/codestar_service.R | 38 R/codestarconnections_interfaces.R | 180 ++++ R/codestarconnections_operations.R | 505 +++++++++++- R/codestarconnections_service.R | 55 - R/codestarnotifications_service.R | 38 R/devopsguru_service.R | 38 R/drs_interfaces.R | 78 + R/drs_operations.R | 123 ++ R/drs_service.R | 41 R/fis_interfaces.R | 114 ++ R/fis_operations.R | 268 ++++++ R/fis_service.R | 48 - R/wellarchitected_interfaces.R | 174 +++- R/wellarchitected_operations.R | 487 +++++++++++ R/wellarchitected_service.R | 56 - R/xray_interfaces.R | 2 R/xray_operations.R | 4 R/xray_service.R | 38 man/cloud9.Rd | 39 man/cloud9_create_environment_ec2.Rd | 42 man/cloudcontrolapi.Rd | 38 man/codeartifact.Rd | 38 man/codebuild.Rd | 40 man/codecatalyst.Rd |only man/codecatalyst_create_access_token.Rd |only man/codecatalyst_create_dev_environment.Rd |only man/codecatalyst_create_project.Rd |only man/codecatalyst_create_source_repository.Rd |only man/codecatalyst_create_source_repository_branch.Rd |only man/codecatalyst_delete_access_token.Rd |only man/codecatalyst_delete_dev_environment.Rd |only man/codecatalyst_delete_project.Rd |only man/codecatalyst_delete_source_repository.Rd |only man/codecatalyst_delete_space.Rd |only man/codecatalyst_get_dev_environment.Rd |only man/codecatalyst_get_project.Rd |only man/codecatalyst_get_source_repository.Rd |only man/codecatalyst_get_source_repository_clone_urls.Rd |only man/codecatalyst_get_space.Rd |only man/codecatalyst_get_subscription.Rd |only man/codecatalyst_get_user_details.Rd |only man/codecatalyst_get_workflow.Rd |only man/codecatalyst_get_workflow_run.Rd |only man/codecatalyst_list_access_tokens.Rd |only man/codecatalyst_list_dev_environment_sessions.Rd |only man/codecatalyst_list_dev_environments.Rd |only man/codecatalyst_list_event_logs.Rd |only man/codecatalyst_list_projects.Rd |only man/codecatalyst_list_source_repositories.Rd |only man/codecatalyst_list_source_repository_branches.Rd |only man/codecatalyst_list_spaces.Rd |only man/codecatalyst_list_workflow_runs.Rd |only man/codecatalyst_list_workflows.Rd |only man/codecatalyst_start_dev_environment.Rd |only man/codecatalyst_start_dev_environment_session.Rd |only man/codecatalyst_start_workflow_run.Rd |only man/codecatalyst_stop_dev_environment.Rd |only man/codecatalyst_stop_dev_environment_session.Rd |only man/codecatalyst_update_dev_environment.Rd |only man/codecatalyst_update_project.Rd |only man/codecatalyst_update_space.Rd |only man/codecatalyst_verify_session.Rd |only man/codecommit.Rd | 42 man/codecommit_create_repository.Rd | 12 man/codecommit_update_repository_encryption_key.Rd |only man/codedeploy.Rd | 46 - man/codedeploy_batch_get_deployment_groups.Rd | 4 man/codedeploy_batch_get_deployment_targets.Rd | 6 man/codedeploy_create_application.Rd | 2 man/codedeploy_create_deployment.Rd | 6 man/codedeploy_create_deployment_config.Rd | 10 man/codedeploy_create_deployment_group.Rd | 22 man/codedeploy_delete_application.Rd | 4 man/codedeploy_delete_deployment_config.Rd | 2 man/codedeploy_delete_deployment_group.Rd | 4 man/codedeploy_delete_resources_by_external_id.Rd | 2 man/codedeploy_get_application.Rd | 4 man/codedeploy_get_deployment.Rd | 2 man/codedeploy_get_deployment_config.Rd | 2 man/codedeploy_get_deployment_group.Rd | 4 man/codedeploy_get_deployment_target.Rd | 6 man/codedeploy_list_application_revisions.Rd | 4 man/codedeploy_list_applications.Rd | 6 man/codedeploy_list_deployment_configs.Rd | 6 man/codedeploy_list_deployment_groups.Rd | 10 man/codedeploy_list_deployment_targets.Rd | 4 man/codedeploy_list_deployments.Rd | 8 man/codedeploy_register_application_revision.Rd | 4 man/codedeploy_register_on_premises_instance.Rd | 2 man/codedeploy_update_deployment_group.Rd | 23 man/codeguruprofiler.Rd | 38 man/codegurureviewer.Rd | 40 man/codegurusecurity.Rd |only man/codegurusecurity_batch_get_findings.Rd |only man/codegurusecurity_create_scan.Rd |only man/codegurusecurity_create_upload_url.Rd |only man/codegurusecurity_get_account_configuration.Rd |only man/codegurusecurity_get_findings.Rd |only man/codegurusecurity_get_metrics_summary.Rd |only man/codegurusecurity_get_scan.Rd |only man/codegurusecurity_list_findings_metrics.Rd |only man/codegurusecurity_list_scans.Rd |only man/codegurusecurity_list_tags_for_resource.Rd |only man/codegurusecurity_tag_resource.Rd |only man/codegurusecurity_untag_resource.Rd |only man/codegurusecurity_update_account_configuration.Rd |only man/codepipeline.Rd | 40 man/codepipeline_retry_stage_execution.Rd | 9 man/codepipeline_start_pipeline_execution.Rd | 16 man/codestar.Rd | 38 man/codestarconnections.Rd | 55 - man/codestarconnections_create_host.Rd | 2 man/codestarconnections_create_repository_link.Rd |only man/codestarconnections_create_sync_configuration.Rd |only man/codestarconnections_delete_repository_link.Rd |only man/codestarconnections_delete_sync_configuration.Rd |only man/codestarconnections_get_repository_link.Rd |only man/codestarconnections_get_repository_sync_status.Rd |only man/codestarconnections_get_resource_sync_status.Rd |only man/codestarconnections_get_sync_blocker_summary.Rd |only man/codestarconnections_get_sync_configuration.Rd |only man/codestarconnections_list_repository_links.Rd |only man/codestarconnections_list_repository_sync_definitions.Rd |only man/codestarconnections_list_sync_configurations.Rd |only man/codestarconnections_update_repository_link.Rd |only man/codestarconnections_update_sync_blocker.Rd |only man/codestarconnections_update_sync_configuration.Rd |only man/codestarnotifications.Rd | 38 man/devopsguru.Rd | 38 man/drs.Rd | 41 man/drs_create_launch_configuration_template.Rd | 8 man/drs_delete_launch_action.Rd |only man/drs_list_launch_actions.Rd |only man/drs_put_launch_action.Rd |only man/drs_update_launch_configuration.Rd | 6 man/drs_update_launch_configuration_template.Rd | 8 man/fis.Rd | 48 - man/fis_create_experiment_template.Rd | 5 man/fis_create_target_account_configuration.Rd |only man/fis_delete_target_account_configuration.Rd |only man/fis_get_experiment_target_account_configuration.Rd |only man/fis_get_target_account_configuration.Rd |only man/fis_list_experiment_resolved_targets.Rd |only man/fis_list_experiment_target_account_configurations.Rd |only man/fis_list_target_account_configurations.Rd |only man/fis_update_experiment_template.Rd | 5 man/fis_update_target_account_configuration.Rd |only man/wellarchitected.Rd | 56 - man/wellarchitected_create_review_template.Rd |only man/wellarchitected_create_template_share.Rd |only man/wellarchitected_create_workload.Rd | 5 man/wellarchitected_delete_review_template.Rd |only man/wellarchitected_delete_template_share.Rd |only man/wellarchitected_get_review_template.Rd |only man/wellarchitected_get_review_template_answer.Rd |only man/wellarchitected_get_review_template_lens_review.Rd |only man/wellarchitected_list_lens_shares.Rd | 4 man/wellarchitected_list_notifications.Rd | 7 man/wellarchitected_list_profile_shares.Rd | 4 man/wellarchitected_list_profiles.Rd | 3 man/wellarchitected_list_review_template_answers.Rd |only man/wellarchitected_list_review_templates.Rd |only man/wellarchitected_list_share_invitations.Rd | 13 man/wellarchitected_list_template_shares.Rd |only man/wellarchitected_list_workload_shares.Rd | 4 man/wellarchitected_update_review_template.Rd |only man/wellarchitected_update_review_template_answer.Rd |only man/wellarchitected_update_review_template_lens_review.Rd |only man/wellarchitected_upgrade_review_template_lens_review.Rd |only man/xray.Rd | 38 man/xray_get_trace_summaries.Rd | 4 tests/testthat/test_codecatalyst.R |only tests/testthat/test_codegurusecurity.R |only tests/testthat/test_codestarconnections.R | 8 tests/testthat/test_wellarchitected.R | 8 200 files changed, 3295 insertions(+), 1032 deletions(-)
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Title: 'Amazon Web Services' Database Services
Description: Interface to 'Amazon Web Services' database services,
including 'Relational Database Service' ('RDS'), 'DynamoDB' 'NoSQL'
database, and more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.database versions 0.4.0 dated 2023-09-11 and 0.5.0 dated 2024-01-09
DESCRIPTION | 31 MD5 | 420 +- NAMESPACE | 2 R/dax_service.R | 38 R/docdb_interfaces.R | 52 R/docdb_operations.R | 88 R/docdb_service.R | 38 R/docdbelastic_interfaces.R |only R/docdbelastic_operations.R |only R/docdbelastic_service.R |only R/dynamodb_interfaces.R | 8 R/dynamodb_operations.R | 17 R/dynamodb_service.R | 40 R/dynamodbstreams_service.R | 38 R/elasticache_interfaces.R | 118 R/elasticache_operations.R | 462 ++ R/elasticache_service.R | 47 R/keyspaces_service.R | 38 R/lakeformation_interfaces.R | 100 R/lakeformation_operations.R | 256 + R/lakeformation_service.R | 45 R/memorydb_service.R | 38 R/neptune_interfaces.R | 40 R/neptune_operations.R | 98 R/neptune_service.R | 38 R/neptunedata_interfaces.R |only R/neptunedata_operations.R |only R/neptunedata_service.R |only R/qldb_service.R | 38 R/qldbsession_service.R | 38 R/rds_interfaces.R | 252 + R/rds_operations.R | 1958 +++++++---- R/rds_service.R | 68 R/rdsdataservice_service.R | 53 R/redshift_interfaces.R | 192 - R/redshift_operations.R | 403 ++ R/redshift_service.R | 49 R/redshiftdataapiservice_service.R | 38 R/redshiftserverless_interfaces.R | 240 + R/redshiftserverless_operations.R | 642 +++ R/redshiftserverless_service.R | 53 R/simpledb_service.R | 38 R/timestreamquery_service.R | 38 R/timestreamwrite_service.R | 38 man/dax.Rd | 38 man/docdb.Rd | 38 man/docdb_create_db_cluster.Rd | 17 man/docdb_create_db_instance.Rd | 10 man/docdb_modify_db_cluster.Rd | 13 man/docdb_modify_db_instance.Rd | 17 man/docdb_restore_db_cluster_from_snapshot.Rd | 13 man/docdb_restore_db_cluster_to_point_in_time.Rd | 13 man/docdbelastic.Rd |only man/docdbelastic_create_cluster.Rd |only man/docdbelastic_create_cluster_snapshot.Rd |only man/docdbelastic_delete_cluster.Rd |only man/docdbelastic_delete_cluster_snapshot.Rd |only man/docdbelastic_get_cluster.Rd |only man/docdbelastic_get_cluster_snapshot.Rd |only man/docdbelastic_list_cluster_snapshots.Rd |only man/docdbelastic_list_clusters.Rd |only man/docdbelastic_list_tags_for_resource.Rd |only man/docdbelastic_restore_cluster_from_snapshot.Rd |only man/docdbelastic_tag_resource.Rd |only man/docdbelastic_untag_resource.Rd |only man/docdbelastic_update_cluster.Rd |only man/dynamodb.Rd | 40 man/dynamodb_export_table_to_point_in_time.Rd | 12 man/dynamodb_list_backups.Rd | 5 man/dynamodb_scan.Rd | 2 man/dynamodbstreams.Rd | 38 man/elasticache.Rd | 47 man/elasticache_copy_serverless_cache_snapshot.Rd |only man/elasticache_create_cache_cluster.Rd | 19 man/elasticache_create_replication_group.Rd | 25 man/elasticache_create_serverless_cache.Rd |only man/elasticache_create_serverless_cache_snapshot.Rd |only man/elasticache_create_user_group.Rd | 3 man/elasticache_delete_serverless_cache.Rd |only man/elasticache_delete_serverless_cache_snapshot.Rd |only man/elasticache_describe_reserved_cache_nodes.Rd | 19 man/elasticache_describe_reserved_cache_nodes_offerings.Rd | 19 man/elasticache_describe_serverless_cache_snapshots.Rd |only man/elasticache_describe_serverless_caches.Rd |only man/elasticache_export_serverless_cache_snapshot.Rd |only man/elasticache_modify_replication_group.Rd | 2 man/elasticache_modify_serverless_cache.Rd |only man/keyspaces.Rd | 38 man/lakeformation.Rd | 45 man/lakeformation_create_lake_format_identi_center_config.Rd |only man/lakeformation_create_lake_formation_opt_in.Rd |only man/lakeformation_delete_lake_format_identi_center_config.Rd |only man/lakeformation_delete_lake_formation_opt_in.Rd |only man/lakeformation_descri_lake_format_identi_center_config.Rd |only man/lakeformation_get_temporary_glue_table_credentials.Rd | 10 man/lakeformation_list_lake_formation_opt_ins.Rd |only man/lakeformation_register_resource.Rd | 7 man/lakeformation_update_lake_format_identi_center_config.Rd |only man/lakeformation_update_resource.Rd | 11 man/memorydb.Rd | 38 man/neptune.Rd | 38 man/neptune_add_role_to_db_cluster.Rd | 2 man/neptune_create_db_cluster.Rd | 37 man/neptune_modify_db_cluster.Rd | 22 man/neptune_restore_db_cluster_from_snapshot.Rd | 14 man/neptune_restore_db_cluster_to_point_in_time.Rd | 14 man/neptunedata.Rd |only man/neptunedata_cancel_gremlin_query.Rd |only man/neptunedata_cancel_loader_job.Rd |only man/neptunedata_cancel_ml_data_processing_job.Rd |only man/neptunedata_cancel_ml_model_training_job.Rd |only man/neptunedata_cancel_ml_model_transform_job.Rd |only man/neptunedata_cancel_open_cypher_query.Rd |only man/neptunedata_create_ml_endpoint.Rd |only man/neptunedata_delete_ml_endpoint.Rd |only man/neptunedata_delete_propertygraph_statistics.Rd |only man/neptunedata_delete_sparql_statistics.Rd |only man/neptunedata_execute_fast_reset.Rd |only man/neptunedata_execute_gremlin_explain_query.Rd |only man/neptunedata_execute_gremlin_profile_query.Rd |only man/neptunedata_execute_gremlin_query.Rd |only man/neptunedata_execute_open_cypher_explain_query.Rd |only man/neptunedata_execute_open_cypher_query.Rd |only man/neptunedata_get_engine_status.Rd |only man/neptunedata_get_gremlin_query_status.Rd |only man/neptunedata_get_loader_job_status.Rd |only man/neptunedata_get_ml_data_processing_job.Rd |only man/neptunedata_get_ml_endpoint.Rd |only man/neptunedata_get_ml_model_training_job.Rd |only man/neptunedata_get_ml_model_transform_job.Rd |only man/neptunedata_get_open_cypher_query_status.Rd |only man/neptunedata_get_propertygraph_statistics.Rd |only man/neptunedata_get_propertygraph_stream.Rd |only man/neptunedata_get_propertygraph_summary.Rd |only man/neptunedata_get_rdf_graph_summary.Rd |only man/neptunedata_get_sparql_statistics.Rd |only man/neptunedata_get_sparql_stream.Rd |only man/neptunedata_list_gremlin_queries.Rd |only man/neptunedata_list_loader_jobs.Rd |only man/neptunedata_list_ml_data_processing_jobs.Rd |only man/neptunedata_list_ml_endpoints.Rd |only man/neptunedata_list_ml_model_training_jobs.Rd |only man/neptunedata_list_ml_model_transform_jobs.Rd |only man/neptunedata_list_open_cypher_queries.Rd |only man/neptunedata_manage_propertygraph_statistics.Rd |only man/neptunedata_manage_sparql_statistics.Rd |only man/neptunedata_start_loader_job.Rd |only man/neptunedata_start_ml_data_processing_job.Rd |only man/neptunedata_start_ml_model_training_job.Rd |only man/neptunedata_start_ml_model_transform_job.Rd |only man/qldb.Rd | 38 man/qldbsession.Rd | 38 man/rds.Rd | 68 man/rds_apply_pending_maintenance_action.Rd | 4 man/rds_backtrack_db_cluster.Rd | 16 man/rds_copy_db_cluster_snapshot.Rd | 5 man/rds_copy_db_snapshot.Rd | 12 man/rds_create_blue_green_deployment.Rd | 12 man/rds_create_custom_db_engine_version.Rd | 9 man/rds_create_db_cluster.Rd | 19 man/rds_create_db_instance.Rd | 180 - man/rds_create_db_instance_read_replica.Rd | 175 man/rds_create_db_parameter_group.Rd | 3 man/rds_create_db_proxy.Rd | 20 man/rds_create_db_proxy_endpoint.Rd | 8 man/rds_create_event_subscription.Rd | 8 man/rds_create_integration.Rd |only man/rds_create_option_group.Rd | 5 man/rds_create_tenant_database.Rd |only man/rds_delete_db_cluster.Rd | 19 man/rds_delete_db_instance.Rd | 22 man/rds_delete_integration.Rd |only man/rds_delete_tenant_database.Rd |only man/rds_describe_certificates.Rd | 6 man/rds_describe_db_cluster_parameters.Rd | 10 man/rds_describe_db_cluster_snapshots.Rd | 14 man/rds_describe_db_engine_versions.Rd | 34 man/rds_describe_db_recommendations.Rd |only man/rds_describe_db_snapshot_tenant_databases.Rd |only man/rds_describe_db_snapshots.Rd | 14 man/rds_describe_engine_default_parameters.Rd | 2 man/rds_describe_event_categories.Rd | 2 man/rds_describe_integrations.Rd |only man/rds_describe_option_group_options.Rd | 9 man/rds_describe_option_groups.Rd | 6 man/rds_describe_orderable_db_instance_options.Rd | 31 man/rds_describe_reserved_db_instances.Rd | 3 man/rds_describe_reserved_db_instances_offerings.Rd | 3 man/rds_describe_tenant_databases.Rd |only man/rds_disable_http_endpoint.Rd |only man/rds_enable_http_endpoint.Rd |only man/rds_failover_db_cluster.Rd | 6 man/rds_modify_certificates.Rd | 5 man/rds_modify_db_cluster.Rd | 24 man/rds_modify_db_instance.Rd | 62 man/rds_modify_db_recommendation.Rd |only man/rds_modify_db_snapshot.Rd | 10 man/rds_modify_event_subscription.Rd | 4 man/rds_modify_option_group.Rd | 5 man/rds_modify_tenant_database.Rd |only man/rds_reboot_db_instance.Rd | 3 man/rds_reset_db_cluster_parameter_group.Rd | 7 man/rds_reset_db_parameter_group.Rd | 6 man/rds_restore_db_cluster_from_s3.Rd | 31 man/rds_restore_db_cluster_from_snapshot.Rd | 38 man/rds_restore_db_cluster_to_point_in_time.Rd | 50 man/rds_restore_db_instance_from_db_snapshot.Rd | 92 man/rds_restore_db_instance_from_s3.Rd | 96 man/rds_restore_db_instance_to_point_in_time.Rd | 196 - man/rds_start_db_cluster.Rd | 4 man/rds_start_db_instance.Rd | 4 man/rds_start_export_task.Rd | 5 man/rds_stop_activity_stream.Rd | 4 man/rdsdataservice.Rd | 53 man/redshift.Rd | 49 man/redshift_associate_data_share_consumer.Rd | 5 man/redshift_authorize_data_share.Rd | 8 man/redshift_create_cluster.Rd | 32 man/redshift_create_redshift_idc_application.Rd |only man/redshift_delete_custom_domain_association.Rd | 4 man/redshift_delete_redshift_idc_application.Rd |only man/redshift_delete_resource_policy.Rd |only man/redshift_describe_custom_domain_associations.Rd | 4 man/redshift_describe_inbound_integrations.Rd |only man/redshift_describe_redshift_idc_applications.Rd |only man/redshift_failover_primary_compute.Rd |only man/redshift_get_resource_policy.Rd |only man/redshift_modify_cluster.Rd | 25 man/redshift_modify_custom_domain_association.Rd | 8 man/redshift_modify_redshift_idc_application.Rd |only man/redshift_put_resource_policy.Rd |only man/redshift_restore_from_cluster_snapshot.Rd | 21 man/redshiftdataapiservice.Rd | 38 man/redshiftserverless.Rd | 53 man/redshiftserverless_convert_recovery_point_to_snapshot.Rd | 2 man/redshiftserverless_create_custom_domain_association.Rd |only man/redshiftserverless_create_endpoint_access.Rd | 4 man/redshiftserverless_create_namespace.Rd | 20 man/redshiftserverless_create_scheduled_action.Rd |only man/redshiftserverless_create_snapshot.Rd | 2 man/redshiftserverless_create_snapshot_copy_configuration.Rd |only man/redshiftserverless_create_workgroup.Rd | 14 man/redshiftserverless_delete_custom_domain_association.Rd |only man/redshiftserverless_delete_scheduled_action.Rd |only man/redshiftserverless_delete_snapshot_copy_configuration.Rd |only man/redshiftserverless_get_credentials.Rd | 8 man/redshiftserverless_get_custom_domain_association.Rd |only man/redshiftserverless_get_scheduled_action.Rd |only man/redshiftserverless_list_custom_domain_associations.Rd |only man/redshiftserverless_list_endpoint_access.Rd | 4 man/redshiftserverless_list_scheduled_actions.Rd |only man/redshiftserverless_list_snapshot_copy_configurations.Rd |only man/redshiftserverless_list_workgroups.Rd | 9 man/redshiftserverless_restore_from_snapshot.Rd | 10 man/redshiftserverless_restore_table_from_recovery_point.Rd |only man/redshiftserverless_update_custom_domain_association.Rd |only man/redshiftserverless_update_namespace.Rd | 16 man/redshiftserverless_update_scheduled_action.Rd |only man/redshiftserverless_update_snapshot_copy_configuration.Rd |only man/redshiftserverless_update_workgroup.Rd | 14 man/simpledb.Rd | 38 man/timestreamquery.Rd | 38 man/timestreamwrite.Rd | 38 tests/testthat/test_docdbelastic.R |only tests/testthat/test_elasticache.R | 16 tests/testthat/test_lakeformation.R | 12 tests/testthat/test_neptunedata.R |only tests/testthat/test_rds.R | 16 tests/testthat/test_redshift.R | 8 tests/testthat/test_redshiftserverless.R | 12 270 files changed, 6450 insertions(+), 2434 deletions(-)
Title: Pre-Compiled 'CmdStan' Models in R Packages
Description: Similar to 'rstantools' for 'rstan',
the 'instantiate' package builds pre-compiled
'CmdStan' models into CRAN-ready statistical modeling R packages.
The models compile once during installation,
the executables live inside the file systems of their respective packages,
and users have the full power and convenience of
'cmdstanr' without any additional compilation after package installation.
This approach saves time and helps R package developers
migrate from 'rstan' to the more modern 'cmdstanr'.
Packages 'rstantools', 'cmdstanr', 'stannis', and
'stanapi' are similar Stan clients with different objectives.
Author: William Michael Landau [aut, cre]
,
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between instantiate versions 0.0.2 dated 2023-08-11 and 0.2.0 dated 2024-01-09
instantiate-0.0.2/instantiate/inst/cmdstan.R |only instantiate-0.0.2/instantiate/inst/configuration/configure |only instantiate-0.0.2/instantiate/inst/configuration/configure.win |only instantiate-0.0.2/instantiate/inst/example.txt |only instantiate-0.2.0/instantiate/DESCRIPTION | 29 +-- instantiate-0.2.0/instantiate/MD5 | 86 +++++----- instantiate-0.2.0/instantiate/NAMESPACE | 1 instantiate-0.2.0/instantiate/NEWS.md | 21 ++ instantiate-0.2.0/instantiate/R/stan_cmdstan_exists.R | 14 + instantiate-0.2.0/instantiate/R/stan_cmdstan_path.R | 73 ++++---- instantiate-0.2.0/instantiate/R/stan_cmdstan_version.R | 11 - instantiate-0.2.0/instantiate/R/stan_package.R | 12 - instantiate-0.2.0/instantiate/R/stan_package_compile.R | 45 +---- instantiate-0.2.0/instantiate/R/stan_package_configure.R | 37 ++-- instantiate-0.2.0/instantiate/R/stan_package_create.R | 31 ++- instantiate-0.2.0/instantiate/R/stan_package_model.R | 32 +++ instantiate-0.2.0/instantiate/R/stan_package_model_files.R | 14 + instantiate-0.2.0/instantiate/R/utils_assert.R | 25 ++ instantiate-0.2.0/instantiate/R/utils_cmdstan.R | 21 -- instantiate-0.2.0/instantiate/cleanup | 8 instantiate-0.2.0/instantiate/cleanup.win | 8 instantiate-0.2.0/instantiate/configure | 9 - instantiate-0.2.0/instantiate/configure.win | 8 instantiate-0.2.0/instantiate/inst/configuration/cleanup | 10 - instantiate-0.2.0/instantiate/inst/configuration/cleanup.win | 10 - instantiate-0.2.0/instantiate/inst/configuration/install.libs.R |only instantiate-0.2.0/instantiate/inst/example |only instantiate-0.2.0/instantiate/man/instantiate-package.Rd | 11 - instantiate-0.2.0/instantiate/man/stan_cmdstan_exists.Rd | 47 ++--- instantiate-0.2.0/instantiate/man/stan_cmdstan_path.Rd | 38 ++-- instantiate-0.2.0/instantiate/man/stan_cmdstan_version.Rd | 43 ++--- instantiate-0.2.0/instantiate/man/stan_package_clean.Rd | 4 instantiate-0.2.0/instantiate/man/stan_package_compile.Rd | 61 ++----- instantiate-0.2.0/instantiate/man/stan_package_configure.Rd | 4 instantiate-0.2.0/instantiate/man/stan_package_model.Rd | 38 ++-- instantiate-0.2.0/instantiate/man/stan_package_model_files.Rd | 6 instantiate-0.2.0/instantiate/src/Makevars | 2 instantiate-0.2.0/instantiate/src/Makevars.win |only instantiate-0.2.0/instantiate/src/cmdstan.c | 12 + instantiate-0.2.0/instantiate/src/install.libs.R |only instantiate-0.2.0/instantiate/tests/testthat/test-stan_package_compile.R | 5 instantiate-0.2.0/instantiate/tests/testthat/test-stan_package_configure.R | 19 -- instantiate-0.2.0/instantiate/tests/testthat/test-stan_package_create.R | 2 43 files changed, 408 insertions(+), 389 deletions(-)
Title: 'Amazon Web Services' Customer Engagement Services
Description: Interface to 'Amazon Web Services' customer engagement
services, including 'Simple Email Service', 'Connect' contact center
service, and more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.customer.engagement versions 0.4.0 dated 2023-09-11 and 0.5.0 dated 2024-01-09
DESCRIPTION | 9 MD5 | 329 - NAMESPACE | 1 R/connect_interfaces.R | 628 ++ R/connect_operations.R | 2328 +++++++++- R/connect_service.R | 105 R/connectcampaignservice_service.R | 38 R/connectcases_interfaces.R |only R/connectcases_operations.R |only R/connectcases_service.R |only R/connectcontactlens_service.R | 38 R/connectparticipant_service.R | 38 R/connectwisdomservice_interfaces.R | 122 R/connectwisdomservice_operations.R | 489 +- R/connectwisdomservice_service.R | 50 R/customerprofiles_interfaces.R | 24 R/customerprofiles_operations.R | 31 R/customerprofiles_service.R | 39 R/pinpoint_operations.R | 15 R/pinpoint_service.R | 40 R/pinpointemail_service.R | 38 R/pinpointsmsvoice_service.R | 38 R/pinpointsmsvoicev2_interfaces.R | 336 + R/pinpointsmsvoicev2_operations.R | 910 +++ R/pinpointsmsvoicev2_service.R | 92 R/ses_service.R | 38 R/sesv2_interfaces.R | 2 R/sesv2_operations.R | 2 R/sesv2_service.R | 38 man/connect.Rd | 105 man/connect_associate_analytics_data_set.Rd |only man/connect_associate_flow.Rd |only man/connect_associate_user_proficiencies.Rd |only man/connect_batch_associate_analytics_data_set.Rd |only man/connect_batch_disassociate_analytics_data_set.Rd |only man/connect_batch_get_flow_association.Rd |only man/connect_batch_put_contact.Rd |only man/connect_claim_phone_number.Rd | 15 man/connect_create_agent_status.Rd | 2 man/connect_create_contact_flow.Rd | 7 man/connect_create_contact_flow_module.Rd | 5 man/connect_create_hours_of_operation.Rd | 2 man/connect_create_instance.Rd | 6 man/connect_create_integration_association.Rd | 2 man/connect_create_persistent_contact_association.Rd |only man/connect_create_predefined_attribute.Rd |only man/connect_create_prompt.Rd | 7 man/connect_create_queue.Rd | 2 man/connect_create_quick_connect.Rd | 4 man/connect_create_routing_profile.Rd | 2 man/connect_create_security_profile.Rd | 16 man/connect_create_traffic_distribution_group.Rd | 2 man/connect_create_use_case.Rd | 2 man/connect_create_user.Rd | 2 man/connect_create_user_hierarchy_group.Rd | 2 man/connect_create_view.Rd |only man/connect_create_view_version.Rd |only man/connect_create_vocabulary.Rd | 2 man/connect_delete_predefined_attribute.Rd |only man/connect_delete_security_profile.Rd | 5 man/connect_delete_view.Rd |only man/connect_delete_view_version.Rd |only man/connect_describe_predefined_attribute.Rd |only man/connect_describe_security_profile.Rd | 5 man/connect_describe_user.Rd | 4 man/connect_describe_view.Rd |only man/connect_disassociate_analytics_data_set.Rd |only man/connect_disassociate_flow.Rd |only man/connect_disassociate_user_proficiencies.Rd |only man/connect_get_federation_token.Rd | 4 man/connect_get_flow_association.Rd |only man/connect_get_metric_data_v2.Rd | 354 + man/connect_import_phone_number.Rd |only man/connect_list_analytics_data_associations.Rd |only man/connect_list_flow_associations.Rd |only man/connect_list_integration_associations.Rd | 5 man/connect_list_phone_numbers.Rd | 8 man/connect_list_phone_numbers_v2.Rd | 16 man/connect_list_predefined_attributes.Rd |only man/connect_list_quick_connects.Rd | 2 man/connect_list_realtime_contact_analysis_segments_v2.Rd |only man/connect_list_security_profile_applications.Rd |only man/connect_list_security_profile_permissions.Rd | 5 man/connect_list_user_proficiencies.Rd |only man/connect_list_view_versions.Rd |only man/connect_list_views.Rd |only man/connect_pause_contact.Rd |only man/connect_replicate_instance.Rd | 5 man/connect_resume_contact.Rd |only man/connect_resume_contact_recording.Rd | 6 man/connect_search_available_phone_numbers.Rd | 13 man/connect_search_contacts.Rd |only man/connect_search_predefined_attributes.Rd |only man/connect_search_users.Rd | 8 man/connect_send_chat_integration_event.Rd |only man/connect_start_chat_contact.Rd | 27 man/connect_start_outbound_voice_contact.Rd | 32 man/connect_start_task_contact.Rd | 41 man/connect_start_web_rtc_contact.Rd |only man/connect_stop_contact.Rd | 7 man/connect_suspend_contact_recording.Rd | 6 man/connect_tag_contact.Rd |only man/connect_tag_resource.Rd | 2 man/connect_untag_contact.Rd |only man/connect_update_contact_flow_content.Rd | 6 man/connect_update_contact_flow_module_content.Rd | 3 man/connect_update_contact_routing_data.Rd |only man/connect_update_phone_number.Rd | 17 man/connect_update_phone_number_metadata.Rd |only man/connect_update_predefined_attribute.Rd |only man/connect_update_prompt.Rd | 5 man/connect_update_security_profile.Rd | 13 man/connect_update_traffic_distribution.Rd | 3 man/connect_update_user_proficiencies.Rd |only man/connect_update_view_content.Rd |only man/connect_update_view_metadata.Rd |only man/connectcampaignservice.Rd | 38 man/connectcases.Rd |only man/connectcases_batch_get_field.Rd |only man/connectcases_batch_put_field_options.Rd |only man/connectcases_create_case.Rd |only man/connectcases_create_domain.Rd |only man/connectcases_create_field.Rd |only man/connectcases_create_layout.Rd |only man/connectcases_create_related_item.Rd |only man/connectcases_create_template.Rd |only man/connectcases_delete_domain.Rd |only man/connectcases_get_case.Rd |only man/connectcases_get_case_event_configuration.Rd |only man/connectcases_get_domain.Rd |only man/connectcases_get_layout.Rd |only man/connectcases_get_template.Rd |only man/connectcases_list_cases_for_contact.Rd |only man/connectcases_list_domains.Rd |only man/connectcases_list_field_options.Rd |only man/connectcases_list_fields.Rd |only man/connectcases_list_layouts.Rd |only man/connectcases_list_tags_for_resource.Rd |only man/connectcases_list_templates.Rd |only man/connectcases_put_case_event_configuration.Rd |only man/connectcases_search_cases.Rd |only man/connectcases_search_related_items.Rd |only man/connectcases_tag_resource.Rd |only man/connectcases_untag_resource.Rd |only man/connectcases_update_case.Rd |only man/connectcases_update_field.Rd |only man/connectcases_update_layout.Rd |only man/connectcases_update_template.Rd |only man/connectcontactlens.Rd | 38 man/connectparticipant.Rd | 38 man/connectwisdomservice.Rd | 50 man/connectwisdomservice_create_assistant.Rd | 13 man/connectwisdomservice_create_content.Rd | 6 man/connectwisdomservice_create_knowledge_base.Rd | 10 man/connectwisdomservice_create_quick_response.Rd |only man/connectwisdomservice_delete_content.Rd | 6 man/connectwisdomservice_delete_import_job.Rd |only man/connectwisdomservice_delete_quick_response.Rd |only man/connectwisdomservice_get_content.Rd | 6 man/connectwisdomservice_get_content_summary.Rd | 6 man/connectwisdomservice_get_import_job.Rd |only man/connectwisdomservice_get_knowledge_base.Rd | 6 man/connectwisdomservice_get_quick_response.Rd |only man/connectwisdomservice_list_contents.Rd | 6 man/connectwisdomservice_list_import_jobs.Rd |only man/connectwisdomservice_list_quick_responses.Rd |only man/connectwisdomservice_remove_knowledge_base_template_uri.Rd | 6 man/connectwisdomservice_search_content.Rd | 6 man/connectwisdomservice_search_quick_responses.Rd |only man/connectwisdomservice_start_content_upload.Rd | 15 man/connectwisdomservice_start_import_job.Rd |only man/connectwisdomservice_update_content.Rd | 4 man/connectwisdomservice_update_knowledge_base_template_uri.Rd | 6 man/connectwisdomservice_update_quick_response.Rd |only man/customerprofiles.Rd | 39 man/customerprofiles_detect_profile_object_type.Rd |only man/pinpoint.Rd | 40 man/pinpoint_delete_endpoint.Rd | 3 man/pinpoint_get_endpoint.Rd | 3 man/pinpoint_remove_attributes.Rd | 6 man/pinpoint_update_endpoint.Rd | 3 man/pinpointemail.Rd | 38 man/pinpointsmsvoice.Rd | 38 man/pinpointsmsvoicev2.Rd | 87 man/pinpointsmsvoicev2_create_event_destination.Rd | 4 man/pinpointsmsvoicev2_create_registration.Rd |only man/pinpointsmsvoicev2_create_registration_association.Rd |only man/pinpointsmsvoicev2_create_registration_attachment.Rd |only man/pinpointsmsvoicev2_create_registration_version.Rd |only man/pinpointsmsvoicev2_create_verified_destination_number.Rd |only man/pinpointsmsvoicev2_delete_registration.Rd |only man/pinpointsmsvoicev2_delete_registration_attachment.Rd |only man/pinpointsmsvoicev2_delete_registration_field_value.Rd |only man/pinpointsmsvoicev2_delete_verified_destination_number.Rd |only man/pinpointsmsvoicev2_describe_registration_attachments.Rd |only man/pinpointsmsvoicev2_describe_registration_field_definitions.Rd |only man/pinpointsmsvoicev2_describe_registration_field_values.Rd |only man/pinpointsmsvoicev2_describe_registration_section_definitions.Rd |only man/pinpointsmsvoicev2_describe_registration_type_definitions.Rd |only man/pinpointsmsvoicev2_describe_registration_versions.Rd |only man/pinpointsmsvoicev2_describe_registrations.Rd |only man/pinpointsmsvoicev2_describe_verified_destination_numbers.Rd |only man/pinpointsmsvoicev2_discard_registration_version.Rd |only man/pinpointsmsvoicev2_list_registration_associations.Rd |only man/pinpointsmsvoicev2_put_keyword.Rd | 6 man/pinpointsmsvoicev2_put_registration_field_value.Rd |only man/pinpointsmsvoicev2_release_sender_id.Rd |only man/pinpointsmsvoicev2_request_phone_number.Rd | 2 man/pinpointsmsvoicev2_request_sender_id.Rd |only man/pinpointsmsvoicev2_send_destination_number_verification_code.Rd |only man/pinpointsmsvoicev2_send_text_message.Rd | 6 man/pinpointsmsvoicev2_send_voice_message.Rd | 4 man/pinpointsmsvoicev2_submit_registration_version.Rd |only man/pinpointsmsvoicev2_update_event_destination.Rd | 4 man/pinpointsmsvoicev2_update_phone_number.Rd | 4 man/pinpointsmsvoicev2_update_pool.Rd | 4 man/pinpointsmsvoicev2_update_sender_id.Rd |only man/pinpointsmsvoicev2_verify_destination_number.Rd |only man/ses.Rd | 38 man/sesv2.Rd | 38 man/sesv2_list_email_templates.Rd | 2 tests/testthat/test_connectcases.R |only tests/testthat/test_pinpointsmsvoicev2.R | 32 223 files changed, 6198 insertions(+), 1068 deletions(-)
More information about paws.customer.engagement at CRAN
Permanent link
Title: 'Amazon Web Services' Compute Services
Description: Interface to 'Amazon Web Services' compute services,
including 'Elastic Compute Cloud' ('EC2'), 'Lambda'
functions-as-a-service, containers, batch processing, and more
<https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.compute versions 0.4.0 dated 2023-09-11 and 0.5.0 dated 2024-01-09
DESCRIPTION | 6 MD5 | 445 +-- R/apprunner_interfaces.R | 50 R/apprunner_operations.R | 120 R/apprunner_service.R | 40 R/batch_operations.R | 4 R/batch_service.R | 38 R/braket_interfaces.R | 14 R/braket_operations.R | 22 R/braket_service.R | 38 R/computeoptimizer_interfaces.R | 16 R/computeoptimizer_operations.R | 40 R/computeoptimizer_service.R | 38 R/ec2_interfaces.R | 428 ++- R/ec2_operations.R | 1371 ++++++++- R/ec2_service.R | 73 R/ec2instanceconnect_service.R | 38 R/ecr_interfaces.R | 32 R/ecr_operations.R | 103 R/ecr_service.R | 42 R/ecrpublic_service.R | 38 R/ecs_interfaces.R | 10 R/ecs_operations.R | 67 R/ecs_service.R | 38 R/eks_interfaces.R | 266 + R/eks_operations.R | 1390 ++++++++-- R/eks_service.R | 99 R/elasticbeanstalk_service.R | 38 R/emrcontainers_service.R | 38 R/emrserverless_interfaces.R | 8 R/emrserverless_operations.R | 20 R/emrserverless_service.R | 38 R/imagebuilder_interfaces.R | 224 + R/imagebuilder_operations.R | 743 +++++ R/imagebuilder_service.R | 59 R/lambda_interfaces.R | 20 R/lambda_operations.R | 12 R/lambda_service.R | 38 R/lightsail_service.R | 38 R/proton_service.R | 38 R/serverlessapplicationrepository_operations.R | 4 R/serverlessapplicationrepository_service.R | 38 man/apprunner.Rd | 40 man/apprunner_create_auto_scaling_configuration.Rd | 24 man/apprunner_delete_auto_scaling_configuration.Rd | 13 man/apprunner_list_services_for_auto_scaling_configuration.Rd |only man/apprunner_update_default_auto_scaling_configuration.Rd |only man/batch.Rd | 38 man/batch_create_compute_environment.Rd | 2 man/batch_update_compute_environment.Rd | 2 man/braket.Rd | 38 man/braket_create_job.Rd | 3 man/braket_create_quantum_task.Rd | 3 man/braket_get_job.Rd | 4 man/braket_get_quantum_task.Rd | 6 man/computeoptimizer.Rd | 38 man/computeoptimizer_put_recommendation_preferences.Rd | 45 man/ec2.Rd | 73 man/ec2_advertise_byoip_cidr.Rd | 26 man/ec2_allocate_address.Rd | 6 man/ec2_allocate_ipam_pool_cidr.Rd | 4 man/ec2_associate_ipam_byoasn.Rd |only man/ec2_associate_subnet_cidr_block.Rd | 16 man/ec2_associate_trunk_interface.Rd | 4 man/ec2_associate_vpc_cidr_block.Rd | 4 man/ec2_cancel_export_task.Rd | 5 man/ec2_create_fleet.Rd | 2 man/ec2_create_image.Rd | 19 man/ec2_create_ipam.Rd | 7 man/ec2_create_ipam_pool.Rd | 5 man/ec2_create_network_interface.Rd | 5 man/ec2_create_subnet.Rd | 20 man/ec2_create_verified_access_endpoint.Rd | 7 man/ec2_create_verified_access_group.Rd | 5 man/ec2_create_verified_access_instance.Rd | 6 man/ec2_create_verified_access_trust_provider.Rd | 5 man/ec2_create_volume.Rd | 19 man/ec2_delete_ipam_pool.Rd | 9 man/ec2_delete_vpc.Rd | 2 man/ec2_delete_vpc_peering_connection.Rd | 2 man/ec2_deprovision_ipam_byoasn.Rd |only man/ec2_describe_capacity_block_offerings.Rd |only man/ec2_describe_fast_launch_images.Rd | 10 man/ec2_describe_images.Rd | 9 man/ec2_describe_instance_topology.Rd |only man/ec2_describe_instances.Rd | 76 man/ec2_describe_ipam_byoasn.Rd |only man/ec2_describe_locked_snapshots.Rd |only man/ec2_describe_network_interfaces.Rd | 34 man/ec2_describe_security_group_references.Rd | 7 man/ec2_describe_spot_instance_requests.Rd | 6 man/ec2_describe_spot_price_history.Rd | 6 man/ec2_describe_stale_security_groups.Rd | 2 man/ec2_describe_store_image_tasks.Rd | 8 man/ec2_describe_trunk_interface_associations.Rd | 4 man/ec2_disable_fast_launch.Rd | 13 man/ec2_disable_image.Rd |only man/ec2_disable_image_block_public_access.Rd |only man/ec2_disable_snapshot_block_public_access.Rd |only man/ec2_disassociate_ipam_byoasn.Rd |only man/ec2_disassociate_trunk_interface.Rd | 5 man/ec2_enable_fast_launch.Rd | 18 man/ec2_enable_image.Rd |only man/ec2_enable_image_block_public_access.Rd |only man/ec2_enable_snapshot_block_public_access.Rd |only man/ec2_get_image_block_public_access_state.Rd |only man/ec2_get_ipam_discovered_public_addresses.Rd |only man/ec2_get_security_groups_for_vpc.Rd |only man/ec2_get_snapshot_block_public_access_state.Rd |only man/ec2_import_image.Rd | 6 man/ec2_lock_snapshot.Rd |only man/ec2_modify_ipam.Rd | 7 man/ec2_modify_network_interface_attribute.Rd | 5 man/ec2_modify_verified_access_endpoint_policy.Rd | 9 man/ec2_modify_verified_access_group_policy.Rd | 9 man/ec2_modify_verified_access_trust_provider.Rd | 9 man/ec2_modify_volume.Rd | 18 man/ec2_modify_vpn_tunnel_options.Rd | 3 man/ec2_provision_byoip_cidr.Rd | 20 man/ec2_provision_ipam_byoasn.Rd |only man/ec2_purchase_capacity_block.Rd |only man/ec2_release_address.Rd | 6 man/ec2_unlock_snapshot.Rd |only man/ec2instanceconnect.Rd | 38 man/ecr.Rd | 42 man/ecr_create_pull_through_cache_rule.Rd | 24 man/ecr_create_repository.Rd | 5 man/ecr_delete_repository.Rd | 6 man/ecr_update_pull_through_cache_rule.Rd |only man/ecr_validate_pull_through_cache_rule.Rd |only man/ecrpublic.Rd | 38 man/ecs.Rd | 38 man/ecs_create_service.Rd | 6 man/ecs_create_task_set.Rd | 6 man/ecs_put_account_setting.Rd | 20 man/ecs_put_account_setting_default.Rd | 20 man/ecs_run_task.Rd | 12 man/ecs_update_service.Rd | 2 man/eks.Rd | 99 man/eks_associate_access_policy.Rd |only man/eks_associate_encryption_config.Rd | 11 man/eks_associate_identity_provider_config.Rd | 14 man/eks_create_access_entry.Rd |only man/eks_create_addon.Rd | 27 man/eks_create_cluster.Rd | 13 man/eks_create_eks_anywhere_subscription.Rd |only man/eks_create_fargate_profile.Rd | 39 man/eks_create_nodegroup.Rd | 31 man/eks_create_pod_identity_association.Rd |only man/eks_delete_access_entry.Rd |only man/eks_delete_addon.Rd | 6 man/eks_delete_cluster.Rd | 4 man/eks_delete_eks_anywhere_subscription.Rd |only man/eks_delete_fargate_profile.Rd | 3 man/eks_delete_nodegroup.Rd | 7 man/eks_delete_pod_identity_association.Rd |only man/eks_describe_access_entry.Rd |only man/eks_describe_addon.Rd | 2 man/eks_describe_addon_configuration.Rd | 5 man/eks_describe_addon_versions.Rd | 20 man/eks_describe_cluster.Rd | 6 man/eks_describe_eks_anywhere_subscription.Rd |only man/eks_describe_fargate_profile.Rd | 6 man/eks_describe_identity_provider_config.Rd | 7 man/eks_describe_insight.Rd |only man/eks_describe_nodegroup.Rd | 6 man/eks_describe_pod_identity_association.Rd |only man/eks_describe_update.Rd | 5 man/eks_disassociate_access_policy.Rd |only man/eks_disassociate_identity_provider_config.Rd | 4 man/eks_list_access_entries.Rd |only man/eks_list_access_policies.Rd |only man/eks_list_addons.Rd | 29 man/eks_list_associated_access_policies.Rd |only man/eks_list_clusters.Rd | 33 man/eks_list_eks_anywhere_subscriptions.Rd |only man/eks_list_fargate_profiles.Rd | 32 man/eks_list_identity_provider_configs.Rd | 38 man/eks_list_insights.Rd |only man/eks_list_nodegroups.Rd | 40 man/eks_list_pod_identity_associations.Rd |only man/eks_list_tags_for_resource.Rd | 5 man/eks_list_updates.Rd | 35 man/eks_register_cluster.Rd | 11 man/eks_tag_resource.Rd | 14 man/eks_untag_resource.Rd | 10 man/eks_update_access_entry.Rd |only man/eks_update_addon.Rd | 6 man/eks_update_cluster_config.Rd | 9 man/eks_update_cluster_version.Rd | 2 man/eks_update_eks_anywhere_subscription.Rd |only man/eks_update_nodegroup_config.Rd | 7 man/eks_update_nodegroup_version.Rd | 14 man/eks_update_pod_identity_association.Rd |only man/elasticbeanstalk.Rd | 38 man/emrcontainers.Rd | 38 man/emrserverless.Rd | 38 man/emrserverless_create_application.Rd | 12 man/emrserverless_update_application.Rd | 12 man/imagebuilder.Rd | 59 man/imagebuilder_cancel_lifecycle_execution.Rd |only man/imagebuilder_create_component.Rd | 6 man/imagebuilder_create_container_recipe.Rd | 4 man/imagebuilder_create_distribution_configuration.Rd | 4 man/imagebuilder_create_image.Rd | 13 man/imagebuilder_create_image_pipeline.Rd | 13 man/imagebuilder_create_image_recipe.Rd | 4 man/imagebuilder_create_infrastructure_configuration.Rd | 4 man/imagebuilder_create_lifecycle_policy.Rd |only man/imagebuilder_create_workflow.Rd |only man/imagebuilder_delete_lifecycle_policy.Rd |only man/imagebuilder_delete_workflow.Rd |only man/imagebuilder_get_lifecycle_execution.Rd |only man/imagebuilder_get_lifecycle_policy.Rd |only man/imagebuilder_get_workflow.Rd |only man/imagebuilder_import_component.Rd | 6 man/imagebuilder_list_component_build_versions.Rd | 2 man/imagebuilder_list_components.Rd | 2 man/imagebuilder_list_container_recipes.Rd | 2 man/imagebuilder_list_distribution_configurations.Rd | 2 man/imagebuilder_list_image_build_versions.Rd | 2 man/imagebuilder_list_image_packages.Rd | 2 man/imagebuilder_list_image_pipeline_images.Rd | 2 man/imagebuilder_list_image_pipelines.Rd | 2 man/imagebuilder_list_image_recipes.Rd | 2 man/imagebuilder_list_image_scan_finding_aggregations.Rd | 2 man/imagebuilder_list_image_scan_findings.Rd | 2 man/imagebuilder_list_images.Rd | 2 man/imagebuilder_list_infrastructure_configurations.Rd | 2 man/imagebuilder_list_lifecycle_execution_resources.Rd |only man/imagebuilder_list_lifecycle_executions.Rd |only man/imagebuilder_list_lifecycle_policies.Rd |only man/imagebuilder_list_waiting_workflow_steps.Rd |only man/imagebuilder_list_workflow_build_versions.Rd |only man/imagebuilder_list_workflow_executions.Rd | 2 man/imagebuilder_list_workflow_step_executions.Rd | 6 man/imagebuilder_list_workflows.Rd |only man/imagebuilder_send_workflow_step_action.Rd |only man/imagebuilder_start_image_pipeline_execution.Rd | 4 man/imagebuilder_start_resource_state_update.Rd |only man/imagebuilder_update_distribution_configuration.Rd | 4 man/imagebuilder_update_image_pipeline.Rd | 15 man/imagebuilder_update_infrastructure_configuration.Rd | 4 man/imagebuilder_update_lifecycle_policy.Rd |only man/lambda.Rd | 38 man/lambda_create_function.Rd | 5 man/lambda_invoke.Rd | 2 man/lambda_update_function_configuration.Rd | 5 man/lightsail.Rd | 38 man/proton.Rd | 38 man/serverlessapplicationrepository.Rd | 38 man/serverlessapplicationrepository_cre_clo_for_cha_set.Rd | 4 tests/testthat/test_ec2.R | 24 tests/testthat/test_eks.R | 8 tests/testthat/test_imagebuilder.R | 12 255 files changed, 6292 insertions(+), 2108 deletions(-)
Title: Fast Change Point Detection via Sequential Gradient Descent
Description: Implements fast change point detection algorithm based on the
paper "Sequential Gradient Descent and Quasi-Newton's Method for
Change-Point Analysis" by Xianyang Zhang, Trisha Dawn
<https://proceedings.mlr.press/v206/zhang23b.html>. The algorithm is
based on dynamic programming with pruning and sequential gradient
descent. It is able to detect change points a magnitude faster than
the vanilla Pruned Exact Linear Time(PELT). The package includes
examples of linear regression, logistic regression, Poisson
regression, penalized linear regression data, and whole lot more
examples with custom cost function in case the user wants to use their
own cost function.
Author: Xingchi Li [aut, cre, cph] ,
Xianyang Zhang [aut, cph],
Trisha Dawn [aut, cph]
Maintainer: Xingchi Li <anthony.li@stat.tamu.edu>
Diff between fastcpd versions 0.10.0 dated 2023-12-21 and 0.10.1 dated 2024-01-09
fastcpd-0.10.0/fastcpd/man/figures/README-ar1_model-1.png |only fastcpd-0.10.0/fastcpd/man/figures/README-ar3_model_with_innovation_standard_deviation_3-1.png |only fastcpd-0.10.0/fastcpd/man/figures/README-linear_regression-1.png |only fastcpd-0.10.0/fastcpd/man/figures/README-linear_regression_with_one_dimensional_covariate-1.png |only fastcpd-0.10.0/fastcpd/man/figures/README-penalized_linear_regression-1.png |only fastcpd-0.10.1/fastcpd/DESCRIPTION | 6 fastcpd-0.10.1/fastcpd/MD5 | 37 - fastcpd-0.10.1/fastcpd/NEWS.md | 5 fastcpd-0.10.1/fastcpd/README.md | 277 ++-------- fastcpd-0.10.1/fastcpd/inst/doc/comparison-packages.R | 57 +- fastcpd-0.10.1/fastcpd/inst/doc/comparison-packages.Rmd | 61 +- fastcpd-0.10.1/fastcpd/inst/doc/comparison-packages.html | 210 +++---- fastcpd-0.10.1/fastcpd/inst/doc/examples-advanced.html | 2 fastcpd-0.10.1/fastcpd/src/fastcpd_class.cc | 7 fastcpd-0.10.1/fastcpd/src/fastcpd_class_cost.cc | 2 fastcpd-0.10.1/fastcpd/src/fastcpd_classes.h | 9 fastcpd-0.10.1/fastcpd/src/fastcpd_impl.cc | 8 fastcpd-0.10.1/fastcpd/src/test-functions.cc | 32 + fastcpd-0.10.1/fastcpd/tests/testthat/test-coverage.R | 4 fastcpd-0.10.1/fastcpd/tests/testthat/test-examples-data-transcriptome.R | 4 fastcpd-0.10.1/fastcpd/tests/testthat/test-examples-data-well_log.R | 6 fastcpd-0.10.1/fastcpd/vignettes/comparison-packages.Rmd | 61 +- 22 files changed, 365 insertions(+), 423 deletions(-)
Title: Read and Write CDISC Dataset JSON Files
Description: Read, construct and write CDISC (Clinical Data Interchange Standards Consortium) Dataset JSON (JavaScript Object Notation) files, while validating per the Dataset JSON schema file, as described in CDISC (2023) <https://www.cdisc.org/dataset-json>.
Author: Mike Stackhouse [aut, cre] ,
Nicholas Masel [aut]
Maintainer: Mike Stackhouse <mike.stackhouse@atorusresearch.com>
Diff between datasetjson versions 0.1.0 dated 2023-10-13 and 0.2.0 dated 2024-01-09
datasetjson-0.1.0/datasetjson/tests/testthat/testdata/dm_test.json |only datasetjson-0.2.0/datasetjson/DESCRIPTION | 6 datasetjson-0.2.0/datasetjson/MD5 | 21 datasetjson-0.2.0/datasetjson/NEWS.md | 5 datasetjson-0.2.0/datasetjson/R/read_dataset_json.R | 9 datasetjson-0.2.0/datasetjson/R/write_dataset_json.R | 9 datasetjson-0.2.0/datasetjson/README.md | 7 datasetjson-0.2.0/datasetjson/build/vignette.rds |binary datasetjson-0.2.0/datasetjson/inst/doc/getting_started.html | 416 +++++----- datasetjson-0.2.0/datasetjson/tests/testthat/test-date_time_conversions.R | 12 datasetjson-0.2.0/datasetjson/tests/testthat/test-read_dataset_json.R | 1 datasetjson-0.2.0/datasetjson/tests/testthat/test-write_dataset_json.R | 4 12 files changed, 234 insertions(+), 256 deletions(-)
Title: Analyses of Circadian Data
Description: Uses non-linear regression to statistically compare two circadian rhythms.
Groups are only compared if both are rhythmic (amplitude is non-zero).
Performs analyses regarding mesor, phase, and amplitude, reporting on estimates and statistical differences, for each, between groups.
Details can be found in Parsons et al (2020) <doi:10.1093/bioinformatics/btz730>.
Author: Rex Parsons [aut, cre] ,
Alexander Bender [ctb]
Maintainer: Rex Parsons <Rex.Parsons94@gmail.com>
Diff between circacompare versions 0.1.1 dated 2021-04-20 and 0.2.0 dated 2024-01-09
circacompare-0.1.1/circacompare/inst/doc/circacompare-vignette.R |only circacompare-0.1.1/circacompare/inst/doc/circacompare-vignette.Rmd |only circacompare-0.1.1/circacompare/inst/doc/circacompare-vignette.html |only circacompare-0.1.1/circacompare/vignettes/circacompare-vignette.Rmd |only circacompare-0.2.0/circacompare/DESCRIPTION | 29 circacompare-0.2.0/circacompare/MD5 | 49 circacompare-0.2.0/circacompare/NEWS.md | 14 circacompare-0.2.0/circacompare/R/circa_single.R | 184 ++- circacompare-0.2.0/circacompare/R/circa_single_mixed.R | 234 ++-- circacompare-0.2.0/circacompare/R/circacompare.R | 257 +++-- circacompare-0.2.0/circacompare/R/circacompare_mixed.R | 312 +++--- circacompare-0.2.0/circacompare/R/make_data.R | 42 circacompare-0.2.0/circacompare/R/utils.R | 497 +++++----- circacompare-0.2.0/circacompare/README.md | 2 circacompare-0.2.0/circacompare/build/vignette.rds |binary circacompare-0.2.0/circacompare/inst/CITATION | 18 circacompare-0.2.0/circacompare/inst/WORDLIST |only circacompare-0.2.0/circacompare/inst/doc/circacompare.R |only circacompare-0.2.0/circacompare/inst/doc/circacompare.Rmd |only circacompare-0.2.0/circacompare/inst/doc/circacompare.html |only circacompare-0.2.0/circacompare/man/circa_single.Rd | 25 circacompare-0.2.0/circacompare/man/circa_single_mixed.Rd | 41 circacompare-0.2.0/circacompare/man/circacompare.Rd | 23 circacompare-0.2.0/circacompare/man/circacompare_mixed.Rd | 38 circacompare-0.2.0/circacompare/man/make_data.Rd | 2 circacompare-0.2.0/circacompare/tests/testthat/test-circa_single.R | 173 ++- circacompare-0.2.0/circacompare/tests/testthat/test-circa_single_mixed.R | 126 ++ circacompare-0.2.0/circacompare/tests/testthat/test-circacompare.R | 113 +- circacompare-0.2.0/circacompare/tests/testthat/test-circacompare_mixed.R | 132 ++ circacompare-0.2.0/circacompare/vignettes/circacompare.Rmd |only 30 files changed, 1485 insertions(+), 826 deletions(-)
Title: Visualization of Viral Protein Sequence Diversity Dynamics
Description: To ease the visualization of outputs from Diversity Motif Analyser ('DiMA';
<https://github.com/BVU-BILSAB/DiMA>). 'vDiveR' allows visualization of the diversity
motifs (index and its variants – major, minor and unique) for elucidation of
the underlying inherent dynamics. Please refer <https://vdiver-manual.readthedocs.io/en/latest/>
for more information.
Author: Pendy Tok [aut, cre],
Li Chuin Chong [aut],
Evgenia Chikina [aut],
Yin Cheng Chen [aut],
Mohammad Asif Khan [aut]
Maintainer: Pendy Tok <pendytok0518@gmail.com>
Diff between vDiveR versions 1.2.0 dated 2023-09-12 and 1.2.1 dated 2024-01-09
vDiveR-1.2.0/vDiveR/tests/testthat/testthat-problems.rds |only vDiveR-1.2.1/vDiveR/DESCRIPTION | 8 +- vDiveR-1.2.1/vDiveR/MD5 | 25 +++--- vDiveR-1.2.1/vDiveR/NAMESPACE | 5 + vDiveR-1.2.1/vDiveR/NEWS.md | 5 - vDiveR-1.2.1/vDiveR/R/metadata_extraction.R | 38 +++++---- vDiveR-1.2.1/vDiveR/R/plot_dynamics_proteome.R | 12 +-- vDiveR-1.2.1/vDiveR/R/plot_time.R | 58 ++++++++++----- vDiveR-1.2.1/vDiveR/R/plot_worldmap.R | 40 +++++++--- vDiveR-1.2.1/vDiveR/README.md | 2 vDiveR-1.2.1/vDiveR/man/metadata_extraction.Rd | 3 vDiveR-1.2.1/vDiveR/man/plot_time.Rd | 12 ++- vDiveR-1.2.1/vDiveR/man/plot_worldmap.Rd | 4 - vDiveR-1.2.1/vDiveR/man/vDiveR-package.Rd | 2 14 files changed, 135 insertions(+), 79 deletions(-)
Title: Probabilistic Forecast Combination Using CRPS Learning
Description: Combine probabilistic forecasts using CRPS learning algorithms proposed in Berrisch, Ziel (2021) <arXiv:2102.00968> <doi:10.1016/j.jeconom.2021.11.008>. The package implements multiple online learning algorithms like Bernstein online aggregation; see Wintenberger (2014) <arXiv:1404.1356>. Quantile regression is also implemented for comparison purposes. Model parameters can be tuned automatically with respect to the loss of the forecast combination. Methods like predict(), update(), plot() and print() are available for convenience. This package utilizes the optim C++ library for numeric optimization <https://github.com/kthohr/optim>.
Author: Jonathan Berrisch [aut, cre] ,
Florian Ziel [aut]
Maintainer: Jonathan Berrisch <Jonathan@Berrisch.biz>
Diff between profoc versions 1.2.1 dated 2023-08-25 and 1.3.0 dated 2024-01-09
profoc-1.2.1/profoc/R/cppclock.R |only profoc-1.3.0/profoc/DESCRIPTION | 8 - profoc-1.3.0/profoc/MD5 | 56 +++++--- profoc-1.3.0/profoc/NAMESPACE | 6 profoc-1.3.0/profoc/NEWS.md | 13 ++ profoc-1.3.0/profoc/R/misc.R | 139 +++++++++++++++++++++- profoc-1.3.0/profoc/R/online.R | 84 +++---------- profoc-1.3.0/profoc/R/online_update.R | 7 - profoc-1.3.0/profoc/R/splines.R | 41 ++++++ profoc-1.3.0/profoc/build/partial.rdb |binary profoc-1.3.0/profoc/build/vignette.rds |binary profoc-1.3.0/profoc/inst/doc/class.R |only profoc-1.3.0/profoc/inst/doc/class.Rmd |only profoc-1.3.0/profoc/inst/doc/class.html |only profoc-1.3.0/profoc/inst/doc/production.R |only profoc-1.3.0/profoc/inst/doc/production.Rmd |only profoc-1.3.0/profoc/inst/doc/production.html |only profoc-1.3.0/profoc/inst/doc/profoc.R | 11 - profoc-1.3.0/profoc/inst/doc/profoc.Rmd | 3 profoc-1.3.0/profoc/inst/doc/profoc.html | 39 +++--- profoc-1.3.0/profoc/inst/include/clock.h | 59 ++++++++- profoc-1.3.0/profoc/inst/include/conline.h | 16 +- profoc-1.3.0/profoc/man/batch.Rd | 2 profoc-1.3.0/profoc/man/init_experts_list.Rd |only profoc-1.3.0/profoc/man/make_basis_mats.Rd |only profoc-1.3.0/profoc/man/make_hat_mats.Rd |only profoc-1.3.0/profoc/man/online.Rd | 2 profoc-1.3.0/profoc/man/oracle.Rd | 2 profoc-1.3.0/profoc/man/post_process_model.Rd |only profoc-1.3.0/profoc/src/conline.cpp | 65 ---------- profoc-1.3.0/profoc/src/conline_exports.cpp | 19 ++- profoc-1.3.0/profoc/tests/testthat/test-predict.R | 5 profoc-1.3.0/profoc/vignettes/class.Rmd |only profoc-1.3.0/profoc/vignettes/methods.html |only profoc-1.3.0/profoc/vignettes/production.Rmd |only profoc-1.3.0/profoc/vignettes/profoc.Rmd | 3 36 files changed, 374 insertions(+), 206 deletions(-)
Title: 'Amazon Web Services' Application Integration Services
Description: Interface to 'Amazon Web Services' application integration
services, including 'Simple Queue Service' ('SQS') message queue,
'Simple Notification Service' ('SNS') publish/subscribe messaging, and
more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.application.integration versions 0.4.0 dated 2023-09-11 and 0.5.0 dated 2024-01-09
DESCRIPTION | 26 - MD5 | 178 ++++++---- NAMESPACE | 3 R/eventbridge_interfaces.R | 6 R/eventbridge_operations.R | 40 +- R/eventbridge_service.R | 38 +- R/eventbridgepipes_interfaces.R |only R/eventbridgepipes_operations.R |only R/eventbridgepipes_service.R |only R/eventbridgescheduler_interfaces.R |only R/eventbridgescheduler_operations.R |only R/eventbridgescheduler_service.R |only R/locationservice_interfaces.R | 24 - R/locationservice_operations.R | 70 ++- R/locationservice_service.R | 38 +- R/mq_service.R | 38 +- R/mwaa_interfaces.R | 8 R/mwaa_operations.R | 27 + R/mwaa_service.R | 49 +- R/resourceexplorer_interfaces.R |only R/resourceexplorer_operations.R |only R/resourceexplorer_service.R |only R/schemas_service.R | 38 +- R/sfn_interfaces.R | 34 + R/sfn_operations.R | 151 +++++++- R/sfn_service.R | 52 +- R/sns_operations.R | 30 + R/sns_service.R | 38 +- R/sqs_interfaces.R | 50 +- R/sqs_operations.R | 12 R/sqs_service.R | 44 +- R/swf_service.R | 38 +- man/eventbridge.Rd | 38 +- man/eventbridge_delete_endpoint.Rd | 2 man/eventbridge_describe_endpoint.Rd | 2 man/eventbridge_list_endpoints.Rd | 2 man/eventbridge_put_rule.Rd | 26 + man/eventbridge_update_endpoint.Rd | 2 man/eventbridgepipes.Rd |only man/eventbridgepipes_create_pipe.Rd |only man/eventbridgepipes_delete_pipe.Rd |only man/eventbridgepipes_describe_pipe.Rd |only man/eventbridgepipes_list_pipes.Rd |only man/eventbridgepipes_list_tags_for_resource.Rd |only man/eventbridgepipes_start_pipe.Rd |only man/eventbridgepipes_stop_pipe.Rd |only man/eventbridgepipes_tag_resource.Rd |only man/eventbridgepipes_untag_resource.Rd |only man/eventbridgepipes_update_pipe.Rd |only man/eventbridgescheduler.Rd |only man/eventbridgescheduler_create_schedule.Rd |only man/eventbridgescheduler_create_schedule_group.Rd |only man/eventbridgescheduler_delete_schedule.Rd |only man/eventbridgescheduler_delete_schedule_group.Rd |only man/eventbridgescheduler_get_schedule.Rd |only man/eventbridgescheduler_get_schedule_group.Rd |only man/eventbridgescheduler_list_schedule_groups.Rd |only man/eventbridgescheduler_list_schedules.Rd |only man/eventbridgescheduler_list_tags_for_resource.Rd |only man/eventbridgescheduler_tag_resource.Rd |only man/eventbridgescheduler_untag_resource.Rd |only man/eventbridgescheduler_update_schedule.Rd |only man/locationservice.Rd | 38 +- man/locationservice_calculate_route.Rd | 13 man/locationservice_create_place_index.Rd | 3 man/locationservice_create_route_calculator.Rd | 2 man/locationservice_create_tracker.Rd | 16 man/locationservice_delete_key.Rd | 13 man/locationservice_get_map_glyphs.Rd | 2 man/locationservice_list_device_positions.Rd | 3 man/locationservice_update_tracker.Rd | 5 man/mq.Rd | 38 +- man/mwaa.Rd | 47 +- man/mwaa_create_environment.Rd | 24 + man/mwaa_update_environment.Rd | 3 man/resourceexplorer.Rd |only man/resourceexplorer_associate_default_view.Rd |only man/resourceexplorer_batch_get_view.Rd |only man/resourceexplorer_create_index.Rd |only man/resourceexplorer_create_view.Rd |only man/resourceexplorer_delete_index.Rd |only man/resourceexplorer_delete_view.Rd |only man/resourceexplorer_disassociate_default_view.Rd |only man/resourceexplorer_get_account_level_service_configuration.Rd |only man/resourceexplorer_get_default_view.Rd |only man/resourceexplorer_get_index.Rd |only man/resourceexplorer_get_view.Rd |only man/resourceexplorer_list_indexes.Rd |only man/resourceexplorer_list_indexes_for_members.Rd |only man/resourceexplorer_list_supported_resource_types.Rd |only man/resourceexplorer_list_tags_for_resource.Rd |only man/resourceexplorer_list_views.Rd |only man/resourceexplorer_search.Rd |only man/resourceexplorer_tag_resource.Rd |only man/resourceexplorer_untag_resource.Rd |only man/resourceexplorer_update_index_type.Rd |only man/resourceexplorer_update_view.Rd |only man/schemas.Rd | 38 +- man/sfn.Rd | 54 +-- man/sfn_delete_state_machine.Rd | 2 man/sfn_describe_execution.Rd | 2 man/sfn_describe_map_run.Rd | 2 man/sfn_list_executions.Rd | 17 man/sfn_redrive_execution.Rd |only man/sfn_send_task_failure.Rd | 7 man/sfn_send_task_heartbeat.Rd | 9 man/sfn_send_task_success.Rd | 7 man/sfn_start_execution.Rd | 4 man/sfn_test_state.Rd |only man/sns.Rd | 38 +- man/sns_create_topic.Rd | 7 man/sns_subscribe.Rd | 19 + man/sqs.Rd | 38 +- man/sqs_create_queue.Rd | 2 man/sqs_get_queue_attributes.Rd | 4 man/sqs_set_queue_attributes.Rd | 2 man/swf.Rd | 40 +- tests/testthat/test_eventbridgepipes.R |only tests/testthat/test_eventbridgescheduler.R |only tests/testthat/test_resourceexplorer.R |only 120 files changed, 1026 insertions(+), 577 deletions(-)
More information about paws.application.integration at CRAN
Permanent link
Title: 'Amazon Web Services' Analytics Services
Description: Interface to 'Amazon Web Services' 'analytics' services,
including 'Elastic MapReduce' 'Hadoop' and 'Spark' big data service,
'Elasticsearch' search engine, and more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.analytics versions 0.4.0 dated 2023-09-11 and 0.5.0 dated 2024-01-09
DESCRIPTION | 33 MD5 | 489 +++++++--- NAMESPACE | 6 R/athena_interfaces.R | 26 R/athena_operations.R | 56 - R/athena_service.R | 43 R/cloudsearch_service.R | 38 R/cloudsearchdomain_service.R | 38 R/datapipeline_service.R | 38 R/datazone_interfaces.R |only R/datazone_operations.R |only R/datazone_service.R |only R/elasticsearchservice_service.R | 38 R/emr_interfaces.R | 20 R/emr_operations.R | 67 + R/emr_service.R | 39 R/entityresolution_interfaces.R |only R/entityresolution_operations.R |only R/entityresolution_service.R |only R/firehose_interfaces.R | 6 R/firehose_operations.R | 5 R/firehose_service.R | 38 R/glue_interfaces.R | 154 ++- R/glue_operations.R | 406 ++++++++ R/glue_service.R | 49 - R/gluedatabrew_service.R | 38 R/healthlake_service.R | 38 R/ivs_interfaces.R | 20 R/ivs_service.R | 38 R/ivsrealtime_interfaces.R |only R/ivsrealtime_operations.R |only R/ivsrealtime_service.R |only R/kafka_interfaces.R | 68 + R/kafka_operations.R | 164 +++ R/kafka_service.R | 43 R/kafkaconnect_service.R | 38 R/kendra_interfaces.R | 6 R/kendra_operations.R | 29 R/kendra_service.R | 38 R/kendraranking_interfaces.R |only R/kendraranking_operations.R |only R/kendraranking_service.R |only R/kinesis_interfaces.R | 32 R/kinesis_operations.R | 90 + R/kinesis_service.R | 41 R/kinesisanalytics_service.R | 38 R/kinesisanalyticsv2_service.R | 38 R/mturk_service.R | 38 R/opensearchingestion_interfaces.R |only R/opensearchingestion_operations.R |only R/opensearchingestion_service.R |only R/opensearchservice_interfaces.R | 124 ++ R/opensearchservice_operations.R | 268 +++++ R/opensearchservice_service.R | 46 R/opensearchserviceserverless_interfaces.R |only R/opensearchserviceserverless_operations.R |only R/opensearchserviceserverless_service.R |only R/quicksight_interfaces.R | 172 ++- R/quicksight_operations.R | 483 +++++++++ R/quicksight_service.R | 48 man/athena.Rd | 42 man/athena_create_data_catalog.Rd | 5 man/athena_get_data_catalog.Rd | 5 man/athena_get_database.Rd | 5 man/athena_get_table_metadata.Rd | 10 man/athena_list_data_catalogs.Rd | 9 man/athena_list_databases.Rd | 10 man/athena_list_query_executions.Rd | 2 man/athena_list_table_metadata.Rd | 6 man/athena_start_calculation_execution.Rd | 3 man/athena_start_query_execution.Rd | 8 man/cloudsearch.Rd | 38 man/cloudsearchdomain.Rd | 38 man/datapipeline.Rd | 38 man/datazone.Rd |only man/datazone_accept_predictions.Rd |only man/datazone_accept_subscription_request.Rd |only man/datazone_cancel_subscription.Rd |only man/datazone_create_asset.Rd |only man/datazone_create_asset_revision.Rd |only man/datazone_create_asset_type.Rd |only man/datazone_create_data_source.Rd |only man/datazone_create_domain.Rd |only man/datazone_create_environment.Rd |only man/datazone_create_environment_profile.Rd |only man/datazone_create_form_type.Rd |only man/datazone_create_glossary.Rd |only man/datazone_create_glossary_term.Rd |only man/datazone_create_group_profile.Rd |only man/datazone_create_listing_change_set.Rd |only man/datazone_create_project.Rd |only man/datazone_create_project_membership.Rd |only man/datazone_create_subscription_grant.Rd |only man/datazone_create_subscription_request.Rd |only man/datazone_create_subscription_target.Rd |only man/datazone_create_user_profile.Rd |only man/datazone_delete_asset.Rd |only man/datazone_delete_asset_type.Rd |only man/datazone_delete_data_source.Rd |only man/datazone_delete_domain.Rd |only man/datazone_delete_environment.Rd |only man/datazone_delete_environment_blueprint_configuration.Rd |only man/datazone_delete_environment_profile.Rd |only man/datazone_delete_form_type.Rd |only man/datazone_delete_glossary.Rd |only man/datazone_delete_glossary_term.Rd |only man/datazone_delete_listing.Rd |only man/datazone_delete_project.Rd |only man/datazone_delete_project_membership.Rd |only man/datazone_delete_subscription_grant.Rd |only man/datazone_delete_subscription_request.Rd |only man/datazone_delete_subscription_target.Rd |only man/datazone_get_asset.Rd |only man/datazone_get_asset_type.Rd |only man/datazone_get_data_source.Rd |only man/datazone_get_data_source_run.Rd |only man/datazone_get_domain.Rd |only man/datazone_get_environment.Rd |only man/datazone_get_environment_blueprint.Rd |only man/datazone_get_environment_blueprint_configuration.Rd |only man/datazone_get_environment_profile.Rd |only man/datazone_get_form_type.Rd |only man/datazone_get_glossary.Rd |only man/datazone_get_glossary_term.Rd |only man/datazone_get_group_profile.Rd |only man/datazone_get_iam_portal_login_url.Rd |only man/datazone_get_listing.Rd |only man/datazone_get_project.Rd |only man/datazone_get_subscription.Rd |only man/datazone_get_subscription_grant.Rd |only man/datazone_get_subscription_request_details.Rd |only man/datazone_get_subscription_target.Rd |only man/datazone_get_user_profile.Rd |only man/datazone_list_asset_revisions.Rd |only man/datazone_list_data_source_run_activities.Rd |only man/datazone_list_data_source_runs.Rd |only man/datazone_list_data_sources.Rd |only man/datazone_list_domains.Rd |only man/datazone_list_environment_blueprint_configurations.Rd |only man/datazone_list_environment_blueprints.Rd |only man/datazone_list_environment_profiles.Rd |only man/datazone_list_environments.Rd |only man/datazone_list_notifications.Rd |only man/datazone_list_project_memberships.Rd |only man/datazone_list_projects.Rd |only man/datazone_list_subscription_grants.Rd |only man/datazone_list_subscription_requests.Rd |only man/datazone_list_subscription_targets.Rd |only man/datazone_list_subscriptions.Rd |only man/datazone_list_tags_for_resource.Rd |only man/datazone_put_environment_blueprint_configuration.Rd |only man/datazone_reject_predictions.Rd |only man/datazone_reject_subscription_request.Rd |only man/datazone_revoke_subscription.Rd |only man/datazone_search.Rd |only man/datazone_search_group_profiles.Rd |only man/datazone_search_listings.Rd |only man/datazone_search_types.Rd |only man/datazone_search_user_profiles.Rd |only man/datazone_start_data_source_run.Rd |only man/datazone_tag_resource.Rd |only man/datazone_untag_resource.Rd |only man/datazone_update_data_source.Rd |only man/datazone_update_domain.Rd |only man/datazone_update_environment.Rd |only man/datazone_update_environment_profile.Rd |only man/datazone_update_glossary.Rd |only man/datazone_update_glossary_term.Rd |only man/datazone_update_group_profile.Rd |only man/datazone_update_project.Rd |only man/datazone_update_subscription_grant_status.Rd |only man/datazone_update_subscription_request.Rd |only man/datazone_update_subscription_target.Rd |only man/datazone_update_user_profile.Rd |only man/elasticsearchservice.Rd | 38 man/emr.Rd | 39 man/emr_create_studio.Rd | 19 man/emr_get_cluster_session_credentials.Rd | 4 man/emr_list_supported_instance_types.Rd | 2 man/emr_run_job_flow.Rd | 12 man/emr_set_keep_job_flow_alive_when_no_steps.Rd |only man/emr_update_studio.Rd | 6 man/entityresolution.Rd |only man/entityresolution_create_id_mapping_workflow.Rd |only man/entityresolution_create_matching_workflow.Rd |only man/entityresolution_create_schema_mapping.Rd |only man/entityresolution_delete_id_mapping_workflow.Rd |only man/entityresolution_delete_matching_workflow.Rd |only man/entityresolution_delete_schema_mapping.Rd |only man/entityresolution_get_id_mapping_job.Rd |only man/entityresolution_get_id_mapping_workflow.Rd |only man/entityresolution_get_match_id.Rd |only man/entityresolution_get_matching_job.Rd |only man/entityresolution_get_matching_workflow.Rd |only man/entityresolution_get_provider_service.Rd |only man/entityresolution_get_schema_mapping.Rd |only man/entityresolution_list_id_mapping_jobs.Rd |only man/entityresolution_list_id_mapping_workflows.Rd |only man/entityresolution_list_matching_jobs.Rd |only man/entityresolution_list_matching_workflows.Rd |only man/entityresolution_list_provider_services.Rd |only man/entityresolution_list_schema_mappings.Rd |only man/entityresolution_list_tags_for_resource.Rd |only man/entityresolution_start_id_mapping_job.Rd |only man/entityresolution_start_matching_job.Rd |only man/entityresolution_tag_resource.Rd |only man/entityresolution_untag_resource.Rd |only man/entityresolution_update_id_mapping_workflow.Rd |only man/entityresolution_update_matching_workflow.Rd |only man/entityresolution_update_schema_mapping.Rd |only man/firehose.Rd | 38 man/firehose_create_delivery_stream.Rd | 5 man/glue.Rd | 49 - man/glue_batch_get_table_optimizer.Rd |only man/glue_create_table_optimizer.Rd |only man/glue_delete_table_optimizer.Rd |only man/glue_get_column_statistics_task_run.Rd |only man/glue_get_column_statistics_task_runs.Rd |only man/glue_get_table_optimizer.Rd |only man/glue_get_unfiltered_partition_metadata.Rd | 11 man/glue_get_unfiltered_partitions_metadata.Rd | 11 man/glue_get_unfiltered_table_metadata.Rd | 19 man/glue_list_column_statistics_task_runs.Rd |only man/glue_list_table_optimizer_runs.Rd |only man/glue_start_column_statistics_task_run.Rd |only man/glue_stop_column_statistics_task_run.Rd |only man/glue_update_job_from_source_control.Rd | 7 man/glue_update_source_control_from_job.Rd | 7 man/glue_update_table_optimizer.Rd |only man/gluedatabrew.Rd | 38 man/healthlake.Rd | 38 man/ivs.Rd | 38 man/ivsrealtime.Rd |only man/ivsrealtime_create_encoder_configuration.Rd |only man/ivsrealtime_create_participant_token.Rd |only man/ivsrealtime_create_stage.Rd |only man/ivsrealtime_create_storage_configuration.Rd |only man/ivsrealtime_delete_encoder_configuration.Rd |only man/ivsrealtime_delete_stage.Rd |only man/ivsrealtime_delete_storage_configuration.Rd |only man/ivsrealtime_disconnect_participant.Rd |only man/ivsrealtime_get_composition.Rd |only man/ivsrealtime_get_encoder_configuration.Rd |only man/ivsrealtime_get_participant.Rd |only man/ivsrealtime_get_stage.Rd |only man/ivsrealtime_get_stage_session.Rd |only man/ivsrealtime_get_storage_configuration.Rd |only man/ivsrealtime_list_compositions.Rd |only man/ivsrealtime_list_encoder_configurations.Rd |only man/ivsrealtime_list_participant_events.Rd |only man/ivsrealtime_list_participants.Rd |only man/ivsrealtime_list_stage_sessions.Rd |only man/ivsrealtime_list_stages.Rd |only man/ivsrealtime_list_storage_configurations.Rd |only man/ivsrealtime_list_tags_for_resource.Rd |only man/ivsrealtime_start_composition.Rd |only man/ivsrealtime_stop_composition.Rd |only man/ivsrealtime_tag_resource.Rd |only man/ivsrealtime_untag_resource.Rd |only man/ivsrealtime_update_stage.Rd |only man/kafka.Rd | 43 man/kafka_create_replicator.Rd |only man/kafka_delete_replicator.Rd |only man/kafka_describe_replicator.Rd |only man/kafka_list_replicators.Rd |only man/kafka_update_replication_info.Rd |only man/kafkaconnect.Rd | 38 man/kendra.Rd | 38 man/kendra_create_experience.Rd | 4 man/kendra_create_index.Rd | 4 man/kendra_query.Rd | 19 man/kendra_update_index.Rd | 3 man/kendraranking.Rd |only man/kendraranking_create_rescore_execution_plan.Rd |only man/kendraranking_delete_rescore_execution_plan.Rd |only man/kendraranking_describe_rescore_execution_plan.Rd |only man/kendraranking_list_rescore_execution_plans.Rd |only man/kendraranking_list_tags_for_resource.Rd |only man/kendraranking_rescore.Rd |only man/kendraranking_tag_resource.Rd |only man/kendraranking_untag_resource.Rd |only man/kendraranking_update_rescore_execution_plan.Rd |only man/kinesis.Rd | 41 man/kinesis_delete_resource_policy.Rd |only man/kinesis_get_resource_policy.Rd |only man/kinesis_put_resource_policy.Rd |only man/kinesisanalytics.Rd | 38 man/kinesisanalyticsv2.Rd | 38 man/mturk.Rd | 38 man/opensearchingestion.Rd |only man/opensearchingestion_create_pipeline.Rd |only man/opensearchingestion_delete_pipeline.Rd |only man/opensearchingestion_get_pipeline.Rd |only man/opensearchingestion_get_pipeline_blueprint.Rd |only man/opensearchingestion_get_pipeline_change_progress.Rd |only man/opensearchingestion_list_pipeline_blueprints.Rd |only man/opensearchingestion_list_pipelines.Rd |only man/opensearchingestion_list_tags_for_resource.Rd |only man/opensearchingestion_start_pipeline.Rd |only man/opensearchingestion_stop_pipeline.Rd |only man/opensearchingestion_tag_resource.Rd |only man/opensearchingestion_untag_resource.Rd |only man/opensearchingestion_update_pipeline.Rd |only man/opensearchingestion_validate_pipeline.Rd |only man/opensearchservice.Rd | 46 man/opensearchservice_add_data_source.Rd |only man/opensearchservice_create_domain.Rd | 3 man/opensearchservice_delete_data_source.Rd |only man/opensearchservice_describe_domains.Rd | 3 man/opensearchservice_get_data_source.Rd |only man/opensearchservice_get_domain_maintenance_status.Rd |only man/opensearchservice_list_data_sources.Rd |only man/opensearchservice_list_domain_maintenances.Rd |only man/opensearchservice_start_domain_maintenance.Rd |only man/opensearchservice_update_data_source.Rd |only man/opensearchservice_update_domain_config.Rd | 5 man/opensearchserviceserverless.Rd |only man/opensearchserviceserverless_batc_get_effe_life_poli.Rd |only man/opensearchserviceserverless_batch_get_collection.Rd |only man/opensearchserviceserverless_batch_get_lifecycle_policy.Rd |only man/opensearchserviceserverless_batch_get_vpc_endpoint.Rd |only man/opensearchserviceserverless_create_access_policy.Rd |only man/opensearchserviceserverless_create_collection.Rd |only man/opensearchserviceserverless_create_lifecycle_policy.Rd |only man/opensearchserviceserverless_create_security_config.Rd |only man/opensearchserviceserverless_create_security_policy.Rd |only man/opensearchserviceserverless_create_vpc_endpoint.Rd |only man/opensearchserviceserverless_delete_access_policy.Rd |only man/opensearchserviceserverless_delete_collection.Rd |only man/opensearchserviceserverless_delete_lifecycle_policy.Rd |only man/opensearchserviceserverless_delete_security_config.Rd |only man/opensearchserviceserverless_delete_security_policy.Rd |only man/opensearchserviceserverless_delete_vpc_endpoint.Rd |only man/opensearchserviceserverless_get_access_policy.Rd |only man/opensearchserviceserverless_get_account_settings.Rd |only man/opensearchserviceserverless_get_policies_stats.Rd |only man/opensearchserviceserverless_get_security_config.Rd |only man/opensearchserviceserverless_get_security_policy.Rd |only man/opensearchserviceserverless_list_access_policies.Rd |only man/opensearchserviceserverless_list_collections.Rd |only man/opensearchserviceserverless_list_lifecycle_policies.Rd |only man/opensearchserviceserverless_list_security_configs.Rd |only man/opensearchserviceserverless_list_security_policies.Rd |only man/opensearchserviceserverless_list_tags_for_resource.Rd |only man/opensearchserviceserverless_list_vpc_endpoints.Rd |only man/opensearchserviceserverless_tag_resource.Rd |only man/opensearchserviceserverless_untag_resource.Rd |only man/opensearchserviceserverless_update_access_policy.Rd |only man/opensearchserviceserverless_update_account_settings.Rd |only man/opensearchserviceserverless_update_collection.Rd |only man/opensearchserviceserverless_update_lifecycle_policy.Rd |only man/opensearchserviceserverless_update_security_config.Rd |only man/opensearchserviceserverless_update_security_policy.Rd |only man/opensearchserviceserverless_update_vpc_endpoint.Rd |only man/quicksight.Rd | 48 man/quicksight_create_account_subscription.Rd | 41 man/quicksight_create_analysis.Rd | 10 man/quicksight_create_dashboard.Rd | 19 man/quicksight_create_data_set.Rd | 6 man/quicksight_create_data_source.Rd | 6 man/quicksight_create_group.Rd | 2 man/quicksight_create_role_membership.Rd |only man/quicksight_create_template.Rd | 6 man/quicksight_delete_identity_propagation_config.Rd |only man/quicksight_delete_role_custom_permission.Rd |only man/quicksight_delete_role_membership.Rd |only man/quicksight_describe_role_custom_permission.Rd |only man/quicksight_list_identity_propagation_configs.Rd |only man/quicksight_list_role_memberships.Rd |only man/quicksight_register_user.Rd | 5 man/quicksight_start_asset_bundle_export_job.Rd | 19 man/quicksight_start_asset_bundle_import_job.Rd | 16 man/quicksight_update_analysis.Rd | 6 man/quicksight_update_dashboard.Rd | 6 man/quicksight_update_dashboard_links.Rd |only man/quicksight_update_identity_propagation_config.Rd |only man/quicksight_update_role_custom_permission.Rd |only man/quicksight_update_template.Rd | 6 tests/testthat/test_datazone.R |only tests/testthat/test_entityresolution.R |only tests/testthat/test_glue.R | 8 tests/testthat/test_ivsrealtime.R |only tests/testthat/test_kafka.R | 8 tests/testthat/test_kendraranking.R |only tests/testthat/test_opensearchingestion.R |only tests/testthat/test_opensearchserviceserverless.R |only 386 files changed, 3568 insertions(+), 1132 deletions(-)
More information about paws.analytics at CRAN
Permanent link
Title: Setting the Critical Path in Project Management
Description: Solving the problem of project management using CPM (Critical Path Method), PERT (Program Evaluation and Review Technique) and LESS (Least Cost Estimating and Scheduling) methods. The package sets the critical path, schedule and Gantt chart. In addition, it allows to draw a graph even with marked critical activities. For more information about project management see: Taha H. A. "Operations Research. An Introduction" (2017, ISBN:978-1-292-16554-7), Rama Murthy P. "Operations Research" (2007, ISBN:978-81-224-2944-2), Yuval Cohen & Arik Sadeh (2006) "A New Approach for Constructing and Generating AOA Networks", Journal of Engineering, Computing and Architecture 1. 1-13, Konarzewska I., Jewczak M., Kucharski A. (2020, ISBN:978-83-8220-112-3), Miszczyńska D., Miszczyński M. "Wybrane metody badań operacyjnych" (2000, ISBN:83-907712-0-9).
Author: Adam Kucharski
Maintainer: Adam Kucharski <aqcharski@interia.pl>
Diff between critpath versions 0.2.1 dated 2023-06-06 and 0.2.2 dated 2024-01-09
DESCRIPTION | 8 +-- MD5 | 42 ++++++++-------- NEWS | 3 + R/criticalpath_methodsAOE.R | 110 +++++++++++++++++++++---------------------- R/lessAOA.R | 44 ++++++++--------- build/vignette.rds |binary inst/doc/CPMandPERT.R | 11 +--- inst/doc/CPMandPERT.Rmd | 25 ++++----- inst/doc/CPMandPERT.html | 105 ++++++++++++++++++++--------------------- inst/doc/Introduction.Rmd | 60 ++++++++++++----------- inst/doc/Introduction.html | 112 ++++++++++++++++++++++---------------------- inst/doc/LESS.R | 14 ++--- inst/doc/LESS.Rmd | 26 +++++----- inst/doc/LESS.html | 44 ++++++++--------- man/plot_alap.Rd | 2 man/plot_asap.Rd | 2 man/plot_gantt.Rd | 2 man/solve_lessAOA.Rd | 12 ++-- man/solve_pathAOA.Rd | 4 - vignettes/CPMandPERT.Rmd | 25 ++++----- vignettes/Introduction.Rmd | 60 ++++++++++++----------- vignettes/LESS.Rmd | 26 +++++----- 22 files changed, 371 insertions(+), 366 deletions(-)
Title: Interact with 'Bluesky' Social
Description: Collect data from and make posts on 'Bluesky' Social
via the Hypertext Transfer Protocol (HTTP) Application Programming
Interface (API), as documented at <https://atproto.com/specs/xrpc>. This
further supports broader queries to the Authenticated Transfer (AT) Protocol
<https://atproto.com/> which 'Bluesky' Social relies on. Data is returned in a
tidy format and posts can be made using a simple interface.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <christopherkenny@fas.harvard.edu>
Diff between bskyr versions 0.1.0 dated 2023-11-26 and 0.1.2 dated 2024-01-09
DESCRIPTION | 7 + MD5 | 125 ++++++++++++++++---------------- NAMESPACE | 1 NEWS.md | 11 ++ R/actor_profile.R | 3 R/actor_search.R | 19 +++- R/actor_suggestions.R | 24 ++++-- R/feed_author_feed.R | 25 ++++-- R/feed_feed.R | 25 ++++-- R/feed_feed_generator.R | 107 +++++++++++++-------------- R/feed_feed_generators.R | 115 ++++++++++++++--------------- R/feed_feeds.R | 20 +++-- R/feed_get_posts.R | 147 +++++++++++++++++++------------------- R/feed_likes.R | 20 +++-- R/feed_post_likes.R | 19 +++- R/feed_post_thread.R | 3 R/feed_reposts.R | 19 +++- R/feed_search.R | 115 ++++++++++++++++++----------- R/feed_suggestions.R | 19 +++- R/feed_timeline.R | 29 +++++-- R/graph_actor_lists.R | 125 +++++++++++++++++--------------- R/graph_blocked_lists.R | 101 +++++++++++++------------- R/graph_blocks.R | 109 +++++++++++++++------------- R/graph_follow_suggestions.R | 3 R/graph_followers.R | 142 +++++++++++++++++++----------------- R/graph_follows.R | 145 +++++++++++++++++++------------------ R/graph_muted_lists.R | 73 +++++++++--------- R/graph_mutes.R | 109 +++++++++++++++------------- R/identity_resolve_handle.R | 3 R/notification_notifications.R | 113 +++++++++++++++-------------- R/proc.R | 2 R/record_like.R | 3 R/record_post.R | 3 R/record_repost.R | 3 R/repo_create_record.R | 3 R/repo_delete_record.R | 1 R/repo_describe_repo.R | 3 R/repo_get_record.R | 3 R/repo_list_records.R | 19 +++- R/repo_upload_blob.R | 1 R/roxygen.R | 6 + R/utils.R | 35 ++++++++- README.md | 41 +++++++++- inst/WORDLIST | 5 + man/bs_get_actor_lists.Rd | 7 + man/bs_get_actor_suggestions.Rd | 5 + man/bs_get_author_feed.Rd | 5 + man/bs_get_blocked_lists.Rd | 3 man/bs_get_blocks.Rd | 5 + man/bs_get_feed.Rd | 5 + man/bs_get_feed_suggestions.Rd | 5 + man/bs_get_feeds.Rd | 5 + man/bs_get_followers.Rd | 5 + man/bs_get_follows.Rd | 5 + man/bs_get_likes.Rd | 5 + man/bs_get_mutes.Rd | 5 + man/bs_get_notifications.Rd | 5 + man/bs_get_post_likes.Rd | 5 + man/bs_get_reposts.Rd | 5 + man/bs_get_timeline.Rd | 5 + man/bs_list_records.Rd | 5 + man/bs_search_actors.Rd | 5 + man/bs_search_posts.Rd |only tests/testthat/t/f/search |only tests/testthat/test-feed_search.R |only 65 files changed, 1173 insertions(+), 821 deletions(-)
Title: Manage Massive Matrices with Shared Memory and Memory-Mapped
Files
Description: Create, store, access, and manipulate massive matrices.
Matrices are allocated to shared memory and may use memory-mapped
files. Packages 'biganalytics', 'bigtabulate', 'synchronicity', and
'bigalgebra' provide advanced functionality.
Author: Michael J. Kane [aut, cre] ,
John W. Emerson [aut],
Peter Haverty [aut],
Charles Determan [aut]
Maintainer: Michael J. Kane <bigmemoryauthors@gmail.com>
Diff between bigmemory versions 4.6.1 dated 2022-05-02 and 4.6.4 dated 2024-01-09
DESCRIPTION | 12 ++++++------ MD5 | 16 ++++++++-------- R/bigmemory.R | 11 +++-------- configure | 3 ++- inst/CITATION | 9 +++++---- man/big.matrix.descriptor-class.Rd | 27 ++------------------------- man/sub.big.matrix.Rd | 22 ++++++++++++++++------ src/bigmemory.cpp | 4 ++-- src/deepcopy.cpp | 2 +- 9 files changed, 45 insertions(+), 61 deletions(-)
Title: Automatic Machine Learning with 'tidymodels'
Description: The goal of this package will be to provide a simple interface for automatic machine learning that fits the 'tidymodels' framework. The intention is to work for regression and classification problems with a simple verb framework.
Author: Steven Sanderson [aut, cre, cph]
Maintainer: Steven Sanderson <spsanderson@gmail.com>
Diff between tidyAML versions 0.0.3 dated 2023-11-29 and 0.0.4 dated 2024-01-09
tidyAML-0.0.3/tidyAML/R/internas-full-make-wflw.R |only tidyAML-0.0.4/tidyAML/DESCRIPTION | 12 tidyAML-0.0.4/tidyAML/MD5 | 66 +- tidyAML-0.0.4/tidyAML/NAMESPACE | 1 tidyAML-0.0.4/tidyAML/NEWS.md | 24 + tidyAML-0.0.4/tidyAML/R/00_global_variables.R | 11 tidyAML-0.0.4/tidyAML/R/extract-mod-spec.R | 3 tidyAML-0.0.4/tidyAML/R/extract-regression-residuals.R |only tidyAML-0.0.4/tidyAML/R/extract-wflw-pred.R | 5 tidyAML-0.0.4/tidyAML/R/internals-full-make-wflw.R |only tidyAML-0.0.4/tidyAML/R/internals-make-fitted-wflw.R | 5 tidyAML-0.0.4/tidyAML/R/internals-make-preds-wflw.R | 62 ++ tidyAML-0.0.4/tidyAML/R/internals-make-wflw.R | 1 tidyAML-0.0.4/tidyAML/R/make-classification-fast.R | 35 + tidyAML-0.0.4/tidyAML/R/make-regression-fast.R | 29 - tidyAML-0.0.4/tidyAML/R/match-args.R | 1 tidyAML-0.0.4/tidyAML/R/utils-lib-loads.R | 4 tidyAML-0.0.4/tidyAML/README.md | 270 ++++++++---- tidyAML-0.0.4/tidyAML/build/vignette.rds |binary tidyAML-0.0.4/tidyAML/inst/doc/getting-started.R | 2 tidyAML-0.0.4/tidyAML/inst/doc/getting-started.Rmd | 2 tidyAML-0.0.4/tidyAML/inst/doc/getting-started.html | 92 ++-- tidyAML-0.0.4/tidyAML/man/extract_model_spec.Rd | 4 tidyAML-0.0.4/tidyAML/man/extract_regression_residuals.Rd |only tidyAML-0.0.4/tidyAML/man/extract_wflw.Rd | 1 tidyAML-0.0.4/tidyAML/man/extract_wflw_fit.Rd | 1 tidyAML-0.0.4/tidyAML/man/extract_wflw_pred.Rd | 1 tidyAML-0.0.4/tidyAML/man/fast_classification.Rd | 23 - tidyAML-0.0.4/tidyAML/man/fast_regression.Rd | 17 tidyAML-0.0.4/tidyAML/man/full_internal_make_wflw.Rd | 4 tidyAML-0.0.4/tidyAML/man/get_model.Rd | 1 tidyAML-0.0.4/tidyAML/man/internal_make_fitted_wflw.Rd | 5 tidyAML-0.0.4/tidyAML/man/internal_make_wflw.Rd | 1 tidyAML-0.0.4/tidyAML/man/internal_make_wflw_predictions.Rd | 17 tidyAML-0.0.4/tidyAML/man/match_args.Rd | 1 tidyAML-0.0.4/tidyAML/vignettes/getting-started.Rmd | 2 36 files changed, 467 insertions(+), 236 deletions(-)
Title: Companion Tools for Open-Source Tools for Training Resources
(OTTR)
Description: Tools for converting Open-Source Tools for Training Resources
(OTTR) courses into Leanpub or Coursera courses. 'ottrpal' is for use
with the OTTR Template repository to create courses.
Author: Candace Savonen [aut, cre] ,
John Muschelli [aut] ,
Carrie Wright [ctb],
Howard Baek [ctb]
Maintainer: Candace Savonen <cansav09@gmail.com>
Diff between ottrpal versions 1.2 dated 2023-09-20 and 1.2.1 dated 2024-01-09
ottrpal-1.2.1/ottrpal/DESCRIPTION | 6 +++--- ottrpal-1.2.1/ottrpal/MD5 | 8 +++----- ottrpal-1.2.1/ottrpal/NEWS.md | 6 +++++- ottrpal-1.2.1/ottrpal/inst/doc/getting-started.html | 10 +++++----- ottrpal-1.2/ottrpal/tests |only 5 files changed, 16 insertions(+), 14 deletions(-)
Title: IMAGing engINEs, Tools for Application of Image Filters to Data
Matrices
Description: Provides fast application of image filters to data matrices,
using R and C++ algorithms.
Author: Wencheng Lau-Medrano [aut, cre]
Maintainer: Wencheng Lau-Medrano <luis.laum@gmail.com>
Diff between imagine versions 2.0.0 dated 2023-04-27 and 2.1.0 dated 2024-01-09
imagine-2.0.0/imagine/inst/doc/vignette.R |only imagine-2.0.0/imagine/inst/doc/vignette.Rmd |only imagine-2.0.0/imagine/inst/doc/vignette.html |only imagine-2.0.0/imagine/man/image-package.Rd |only imagine-2.0.0/imagine/src/engines.cpp |only imagine-2.0.0/imagine/vignettes/vignette.Rmd |only imagine-2.1.0/imagine/DESCRIPTION | 8 imagine-2.1.0/imagine/MD5 | 45 ++-- imagine-2.1.0/imagine/NAMESPACE | 1 imagine-2.1.0/imagine/NEWS.md | 5 imagine-2.1.0/imagine/R/RcppExports.R | 50 +++- imagine-2.1.0/imagine/R/imagine-internal.R | 17 + imagine-2.1.0/imagine/R/imagine-main.R | 161 ++++++++++----- imagine-2.1.0/imagine/R/imagine-package.R |only imagine-2.1.0/imagine/build/partial.rdb |binary imagine-2.1.0/imagine/build/vignette.rds |binary imagine-2.1.0/imagine/inst/doc/imagine-intro.R |only imagine-2.1.0/imagine/inst/doc/imagine-intro.Rmd |only imagine-2.1.0/imagine/inst/doc/imagine-intro.html |only imagine-2.1.0/imagine/man/agenbagFilters.Rd |only imagine-2.1.0/imagine/man/basic2DFilter.Rd | 146 ++++++------- imagine-2.1.0/imagine/man/contextualMF.Rd | 74 +++--- imagine-2.1.0/imagine/man/convolutions.Rd | 139 ++++++------ imagine-2.1.0/imagine/man/imagine-package.Rd |only imagine-2.1.0/imagine/man/wbImage.Rd | 33 +-- imagine-2.1.0/imagine/src/2D-convolution.cpp |only imagine-2.1.0/imagine/src/RcppExports.cpp | 87 +++++--- imagine-2.1.0/imagine/src/agenbag-gradients.cpp |only imagine-2.1.0/imagine/src/contextual-median-filter.cpp |only imagine-2.1.0/imagine/src/convolution-with-quantiles.cpp |only imagine-2.1.0/imagine/src/mean-filter.cpp |only imagine-2.1.0/imagine/src/quantile-filter.cpp |only imagine-2.1.0/imagine/vignettes/imagine-intro.Rmd |only 33 files changed, 461 insertions(+), 305 deletions(-)
Title: Forecasting Tipping Points at the Community Level
Description: Rolling and expanding window approaches to assessing abundance based early warning signals, non-equilibrium resilience measures, and machine learning. See Dakos et al. (2012) <doi:10.1371/journal.pone.0041010>, Deb et al. (2022) <doi:10.1098/rsos.211475>, Drake and Griffen (2010) <doi:10.1038/nature09389>, Ushio et al. (2018) <doi:10.1038/nature25504> and Weinans et al. (2021) <doi:10.1038/s41598-021-87839-y> for methodological details. Graphical presentation of the outputs are also provided for clear and publishable figures. Visit the 'EWSmethods' website for more information, and tutorials.
Author: Duncan O'Brien [aut, cre, cph]
,
Smita Deb [aut] ,
Sahil Sidheekh [aut],
Narayanan Krishnan [aut],
Partha Dutta [aut] ,
Christopher Clements [aut]
Maintainer: Duncan O'Brien <duncan.a.obrien@gmail.com>
Diff between EWSmethods versions 1.2.1 dated 2023-11-07 and 1.2.4 dated 2024-01-09
DESCRIPTION | 12 ++++++------ MD5 | 24 ++++++++++++------------ NAMESPACE | 2 -- NEWS.md | 3 +++ R/deseason_ts.R | 32 +++----------------------------- R/smapJ_index.R | 7 +++++-- R/smap_jacobian.R | 40 ++++++++++++++++++++++++++++++++++------ R/uni_smap_jacobian.R | 11 +++++++---- inst/CITATION | 5 ++--- inst/doc/ews_assessments.html | 4 ++-- man/deseason_ts.Rd | 2 +- man/multiJI.Rd | 4 ++-- man/multi_smap_jacobian.Rd | 2 +- 13 files changed, 78 insertions(+), 70 deletions(-)
Title: Create Ternary and Holdridge Plots
Description: Plots ternary diagrams (simplex plots / Gibbs triangles) and
Holdridge life zone plots <doi:10.1126/science.105.2727.367> using the
standard graphics functions.
An alternative to 'ggtern', which uses the 'ggplot2' family of plotting
functions.
Includes a 'Shiny' user interface for point-and-click ternary plotting.
Author: Martin R. Smith [aut, cre, cph]
,
Lilian Sanselme [ctb]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between Ternary versions 2.2.1 dated 2023-06-29 and 2.3.0 dated 2024-01-09
DESCRIPTION | 6 MD5 | 107 NAMESPACE | 5 NEWS.md | 13 R/Contours.R | 269 R/Coordinates.R | 73 R/Holdridge.R | 9 R/SetRegion.R |only R/TernaryPlot.R | 56 R/dot-TrianglePlot.R | 14 R/helpers.R | 39 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 26 inst/WORDLIST | 4 inst/doc/Holdridge.Rmd | 8 inst/doc/Holdridge.html | 24 inst/doc/Ternary.R | 45 inst/doc/Ternary.Rmd | 53 inst/doc/Ternary.html | 70 inst/doc/annotation.R | 4 inst/doc/annotation.Rmd | 4 inst/doc/annotation.html | 8 inst/doc/interpolation.R | 14 inst/doc/interpolation.Rmd | 14 inst/doc/interpolation.html | 16 inst/doc/new-users.R | 23 inst/doc/new-users.Rmd | 28 inst/doc/new-users.html | 38 man/ColourTernary.Rd | 6 man/HoldridgePlot.Rd | 21 man/ReflectedEquivalents.Rd | 4 man/TernaryContour.Rd | 25 man/TernaryCoords.Rd | 23 man/TernaryDensityContour.Rd | 4 man/TernaryPlot.Rd | 19 man/TernaryPointValues.Rd | 6 man/TernaryTiles.Rd | 4 man/TernaryXRange.Rd | 4 man/TriangleCentres.Rd | 4 man/XYToTernary.Rd | 18 man/dot-SetRegion.Rd |only tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/Contours/contours.svg | 2958 +-- tests/testthat/_snaps/Contours/density-contours.svg | 512 tests/testthat/_snaps/Contours/filledcontours.svg |19544 +++++++++----------- tests/testthat/test-Annotate.R | 4 tests/testthat/test-Contours.R | 22 tests/testthat/test-Coordinates.R | 44 tests/testthat/test-SetRegion.R |only vignettes/Holdridge.Rmd | 8 vignettes/Ternary.Rmd | 53 vignettes/annotation.Rmd | 4 vignettes/interpolation.Rmd | 14 vignettes/new-users.Rmd | 28 56 files changed, 11993 insertions(+), 12308 deletions(-)
Title: Load Data from 'Linkedin Advertising API'
Description: Get data from 'Linkedin Advertising API' <https://learn.microsoft.com/en-us/linkedin/marketing/overview?view=li-lms-2023-10>.
You can load ad account hierarchy (accounts, users, campaign groups, campaigns and creatives) and
also you can load ad analytics data from your 'Linkedin' Ad account.
Author: Alexey Seleznev [aut, cre]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rlinkedinads versions 0.1.2 dated 2023-11-10 and 0.1.3 dated 2024-01-09
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/auth.R | 2 +- man/rlinkedinads-package.Rd | 4 ++-- 5 files changed, 14 insertions(+), 10 deletions(-)
Title: Utilities Powering the Globe and Mail's Data Journalism Template
Description: Core functions necessary for using The Globe and Mail's R data journalism template, 'startr', along with utilities for day-to-day data journalism tasks, such as reading and writing files, producing graphics and cleaning up datasets.
Author: Tom Cardoso [aut, cre] ,
Michael Pereira [ctb],
The Globe and Mail Inc. [cph]
Maintainer: Tom Cardoso <tcardoso@globeandmail.com>
Diff between upstartr versions 0.1.1 dated 2021-02-23 and 0.1.2 dated 2024-01-09
DESCRIPTION | 11 +++++------ MD5 | 8 ++++---- NEWS.md | 6 ++++++ R/init.R | 2 +- README.md | 4 ++-- 5 files changed, 18 insertions(+), 13 deletions(-)
Title: Spatial Temporal Analysis of Moving Polygons
Description: Perform spatial temporal analysis of moving polygons; a
longstanding analysis problem in Geographic Information Systems. Facilitates
directional analysis, distance analysis, and some other simple functionality for
examining spatial-temporal patterns of moving polygons.
Author: Jed Long [aut, cre] ,
Colin Robertson [aut]
Maintainer: Jed Long <jed.long@uwo.ca>
Diff between stampr versions 0.3.0 dated 2023-04-27 and 0.3.1 dated 2024-01-09
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 4 ++-- NEWS | 5 +++++ R/stamp.direction.r | 8 ++++---- R/stampr-package.r | 8 ++++---- 6 files changed, 25 insertions(+), 20 deletions(-)
Title: Clustering of Sites with Species Data
Description: Clustering algorithm developed for use with plot inventories of species. It groups plots by subsets of diagnostic species rather than overall species composition. There is an unsupervised and a supervised mode, the latter accepting suggestions for species with greater weight and cluster medoids.
Author: Sebastian Schmidtlein [aut, cre]
,
Jason Collison [aut],
Robin Pfannendoerfer [aut],
Lubomir Tichy [ctb]
Maintainer: Sebastian Schmidtlein <schmidtlein@kit.edu>
Diff between isopam versions 1.3.0 dated 2023-12-11 and 2.0 dated 2024-01-09
isopam-1.3.0/isopam/R/isopamp.R |only isopam-1.3.0/isopam/man/andechs.rd |only isopam-2.0/isopam/DESCRIPTION | 12 isopam-2.0/isopam/MD5 | 19 isopam-2.0/isopam/NAMESPACE | 12 isopam-2.0/isopam/R/isopam.R | 1466 +++++++++++++++++++++-------------- isopam-2.0/isopam/R/isotab.R | 515 +++++++----- isopam-2.0/isopam/R/plot.isotab.R |only isopam-2.0/isopam/data/andechs.rda |binary isopam-2.0/isopam/man/andechs.Rd |only isopam-2.0/isopam/man/isopam.Rd | 199 ++-- isopam-2.0/isopam/man/isotab.Rd | 110 +- isopam-2.0/isopam/man/plot.isotab.Rd |only 13 files changed, 1405 insertions(+), 928 deletions(-)
Title: Hydro-Meteorology Time-Series
Description: Functions for the management and treatment of hydrology and
meteorology time-series stored in a 'Sqlite' data base.
Author: Pierre Chevallier [aut, cre]
Maintainer: Pierre Chevallier <pierre.chevallier@mailo.com>
Diff between htsr versions 2.1.2 dated 2023-10-13 and 2.1.3 dated 2024-01-09
htsr-2.1.2/htsr/R/ds_inventory.R |only htsr-2.1.2/htsr/man/ds_inventory.Rd |only htsr-2.1.3/htsr/DESCRIPTION | 8 ++-- htsr-2.1.3/htsr/MD5 | 48 +++++++++++++------------ htsr-2.1.3/htsr/R/d_convert_hydraccess.R | 6 +-- htsr-2.1.3/htsr/R/d_convert_meteofrance_d.R |only htsr-2.1.3/htsr/R/d_imp_hts.R | 23 ++++++----- htsr-2.1.3/htsr/R/d_table.R | 2 - htsr-2.1.3/htsr/R/ds_exp_hts.R | 2 - htsr-2.1.3/htsr/R/ds_inventory_sensor.R |only htsr-2.1.3/htsr/R/ds_inventory_station.R |only htsr-2.1.3/htsr/R/ds_sensor.R | 2 - htsr-2.1.3/htsr/R/ds_station.R | 2 - htsr-2.1.3/htsr/R/h_wl_di.R | 2 - htsr-2.1.3/htsr/R/hs_tstep.R | 16 +++++--- htsr-2.1.3/htsr/R/p_gaps.R | 13 +++--- htsr-2.1.3/htsr/build/vignette.rds |binary htsr-2.1.3/htsr/inst/doc/htsr-package.Rmd | 6 ++- htsr-2.1.3/htsr/inst/doc/htsr-package.html | 10 +++-- htsr-2.1.3/htsr/man/d_convert_hydraccess.Rd | 4 +- htsr-2.1.3/htsr/man/d_convert_meteofrance_d.Rd |only htsr-2.1.3/htsr/man/d_imp_hts.Rd | 8 ++-- htsr-2.1.3/htsr/man/d_table.Rd | 2 - htsr-2.1.3/htsr/man/ds_inventory_sensor.Rd |only htsr-2.1.3/htsr/man/ds_inventory_station.Rd |only htsr-2.1.3/htsr/man/p_gaps.Rd | 2 - htsr-2.1.3/htsr/src/RcppExports.cpp | 6 +-- htsr-2.1.3/htsr/src/u_timestep.cpp | 4 +- htsr-2.1.3/htsr/vignettes/htsr-package.Rmd | 6 ++- 29 files changed, 96 insertions(+), 76 deletions(-)
Title: Collapsed Latent Position Cluster Model for Social Networks
Description: Markov chain Monte Carlo based inference routines for collapsed latent position cluster models or social networks, which includes searches over the model space (number of clusters in the latent position cluster model). The label switching algorithm used is that of Nobile and Fearnside (2007) <doi:10.1007/s11222-006-9014-7> which relies on the algorithm of Carpaneto and Toth (1980) <doi:10.1145/355873.355883>.
Author: Jason Wyse [aut, cre],
Caitriona Ryan [aut],
Nial Friel [ths]
Maintainer: Jason Wyse <wyseja@tcd.ie>
Diff between collpcm versions 1.2 dated 2021-07-13 and 1.3 dated 2024-01-09
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 7 +++++++ R/collpcm.control.R | 12 ++++++------ R/collpcm.get.mkl.latent.positions.R | 2 +- R/plot.collpcm.R | 2 +- build/vignette.rds |binary inst/CITATION | 26 ++++++++++++++------------ inst/doc/collpcm.pdf |binary 9 files changed, 41 insertions(+), 32 deletions(-)
Title: Network Analysis of Immune Repertoire
Description: Pipelines for studying the adaptive immune repertoire of T cells
and B cells via network analysis based on receptor sequence similarity.
Relate clinical outcomes to immune repertoires based on their network
properties, or to particular clusters and clones within a repertoire.
Yang et al. (2023) <doi:10.3389/fimmu.2023.1181825>.
Author: Brian Neal [aut, cre],
Hai Yang [aut],
Phi Long Le [aut],
Li Zhang [cph, aut]
Maintainer: Brian Neal <Brian.Neal@ucsf.edu>
Diff between NAIR versions 1.0.2 dated 2023-09-27 and 1.0.3 dated 2024-01-09
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 8 ++++++++ build/vignette.rds |binary inst/doc/cluster_analysis.html | 4 ++-- inst/doc/supplementary.html | 2 +- tests/testthat/test_functions.R | 3 --- 7 files changed, 20 insertions(+), 15 deletions(-)
Title: Didactic Econometrics Starter Kit
Description: Written to help undergraduate as well as graduate students to get started
with R for basic econometrics without the need to import specific functions
and datasets from many different sources. Primarily, the package is meant to
accompany the German textbook Auer, L.v., Hoffmann, S., Kranz, T. (2023,
ISBN: 978-3-662-68263-0) from which the exercises cover all the topics from the textbook
Auer, L.v. (2023, ISBN: 978-3-658-42699-6).
Author: Soenke Hoffmann [cre, aut],
Tobias Kranz [aut]
Maintainer: Soenke Hoffmann <sohoffma@ovgu.de>
Diff between desk versions 1.1.0 dated 2023-09-19 and 1.1.1 dated 2024-01-09
DESCRIPTION | 6 +++--- MD5 | 39 ++++++++++++++++++++------------------- NEWS.md | 39 ++++++++++++++++++++------------------- R/bp.test.R | 2 +- R/new.session.R | 3 ++- R/plot.desk.R | 3 ++- R/roll.win.R | 4 +++- R/wh.test.R | 2 +- data/data.eu.rda |binary data/data.govexpend.rda |binary data/data.wage.rda |binary data/data.windscreen.rda |binary inst/extdata/data.tip.txt |only man/ar1sim.Rd | 2 +- man/data.ballb.Rd | 2 +- man/data.govexpend.Rd | 2 +- man/data.lifesat.Rd | 2 +- man/data.macro.Rd | 2 +- man/data.wage.Rd | 1 + man/data.windscreen.Rd | 8 ++++---- man/roll.win.Rd | 2 +- 21 files changed, 63 insertions(+), 56 deletions(-)
Title: Topic Models
Description: Provides an interface to the C code for Latent Dirichlet
Allocation (LDA) models and Correlated Topics Models
(CTM) by David M. Blei and co-authors and the C++ code
for fitting LDA models using Gibbs sampling by Xuan-Hieu
Phan and co-authors.
Author: Bettina Gruen [aut, cre] ,
Kurt Hornik [aut] ,
David M Blei [ctb, cph] ,
John D Lafferty [ctb, cph] ,
Xuan-Hieu Phan [ctb, cph] ,
Makoto Matsumoto [ctb, cph] ,
Takuji Nishimura [ctb, cph] ,
Shawn Cokus [ctb]
Maintainer: Bettina Gruen <Bettina.Gruen@R-project.org>
Diff between topicmodels versions 0.2-15 dated 2023-11-27 and 0.2-16 dated 2024-01-09
DESCRIPTION | 11 ++++------ MD5 | 18 +++++++++------- build/vignette.rds |binary data/AssociatedPress.rda |binary data/JSS_papers.rda |only inst/NEWS.Rd | 8 +++++++ inst/doc/topicmodels.R | 49 ++++++++++++++++++++++------------------------ inst/doc/topicmodels.Rnw | 30 +++++++++++++--------------- inst/doc/topicmodels.pdf |binary man/JSS_papers.Rd |only vignettes/topicmodels.Rnw | 30 +++++++++++++--------------- 11 files changed, 75 insertions(+), 71 deletions(-)
Title: Risk Metrics to Evaluating R Packages
Description: Facilities for assessing R packages against a number of metrics to
help quantify their robustness.
Author: R Validation Hub [aut],
Doug Kelkhoff [aut],
Marly Gotti [aut],
Eli Miller [cre, aut],
Kevin K [aut],
Yilong Zhang [aut],
Eric Milliman [aut],
Juliane Manitz [aut],
Mark Padgham [ctb],
PSI special interest group Application and Implementation of
Meth [...truncated...]
Maintainer: Eli Miller <eli.miller@atorusresearch.com>
Diff between riskmetric versions 0.2.3 dated 2023-08-31 and 0.2.4 dated 2024-01-09
DESCRIPTION | 6 MD5 | 26 +- NEWS.md | 4 R/pkg_ref_cache_news.R | 2 R/pkg_ref_class.R | 12 - build/vignette.rds |binary inst/doc/extending-riskmetric.R | 18 - inst/doc/extending-riskmetric.html | 160 +++++++-------- inst/doc/riskmetric.R | 28 +- inst/doc/riskmetric.html | 362 +++++++++++++++++------------------ man/pkg_assess.Rd | 26 +- man/pkg_ref.Rd | 12 - tests/testthat/setup_test_packages.R | 8 tests/testthat/test_pkg_ref.R | 2 14 files changed, 335 insertions(+), 331 deletions(-)
Title: NHANES Data Retrieval
Description: Utility to retrieve data from the National Health and Nutrition
Examination Survey (NHANES) website <https://www.cdc.gov/nchs/nhanes/index.htm>.
Author: Christopher Endres [aut, cre],
Laha Ale [aut] ,
Robert Gentleman [aut],
Deepayan Sarkar [aut]
Maintainer: Christopher Endres <cjendres1@gmail.com>
Diff between nhanesA versions 0.7.4 dated 2023-07-16 and 1.0 dated 2024-01-09
DESCRIPTION | 36 ++- MD5 | 65 +++-- NAMESPACE | 13 - NEWS.md | 5 R/db_util.R |only R/nhanes.R | 447 ++++++++++++++++++++++++++++++++------ R/nhanesDB.R |only R/nhanes_codebook.R | 225 ++++++++++++------- R/nhanes_constants.R | 116 ++++----- R/nhanes_internal_functions.R | 33 +- R/nhanes_options.R |only R/nhanes_search.R | 194 ++++++++++------ R/nhanes_tables.R | 350 +++++++++++++++++++++++++---- R/nhanes_translate.R | 406 +++++++++++++++++++++++++++++----- R/zzz.R |only README.md | 88 +++++++ build/vignette.rds |binary inst/doc/Introducing_nhanesA.R | 78 ++---- inst/doc/Introducing_nhanesA.Rmd | 106 ++------- inst/doc/Introducing_nhanesA.html | 262 +++++++++------------- inst/doc/UsingSurveyWeights.R |only inst/doc/UsingSurveyWeights.html |only inst/doc/UsingSurveyWeights.rmd |only man/browseNHANES.Rd | 30 ++ man/nhanes.Rd | 48 +++- man/nhanesAttr.Rd | 19 + man/nhanesCodebook.Rd | 14 - man/nhanesCodebookFromURL.Rd |only man/nhanesDXA.Rd | 11 man/nhanesFromURL.Rd |only man/nhanesManifest.Rd |only man/nhanesOptions.Rd |only man/nhanesSearch.Rd | 9 man/nhanesSearchTableNames.Rd | 8 man/nhanesTableSummary.Rd |only man/nhanesTableVars.Rd | 9 man/nhanesTables.Rd | 15 - man/nhanesTranslate.Rd | 50 ++-- vignettes/Introducing_nhanesA.Rmd | 106 ++------- vignettes/UsingSurveyWeights.rmd |only 40 files changed, 1912 insertions(+), 831 deletions(-)
Title: Mixtures of von Mises-Fisher Distributions
Description: Fit and simulate mixtures of von Mises-Fisher distributions.
Author: Kurt Hornik [aut, cre] ,
Bettina Gruen [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between movMF versions 0.2-7 dated 2022-04-22 and 0.2-8 dated 2024-01-09
DESCRIPTION | 9 +++--- MD5 | 22 +++++++++------- build/partial.rdb |binary build/vignette.rds |binary data |only inst/CITATION | 10 +++---- inst/NEWS.Rd | 9 ++++++ inst/doc/movMF.R | 60 +++++++++++++++------------------------------ inst/doc/movMF.Rnw | 25 ++++++------------ inst/doc/movMF.pdf |binary man/useR_2008_abstracts.Rd |only vignettes/movMF.Rnw | 25 ++++++------------ vignettes/vMF.bib | 10 ++++++- 13 files changed, 75 insertions(+), 95 deletions(-)
Title: Access the Congress.gov API
Description: Download and read data on United States congressional proceedings.
Data is read from the Library of Congress's Congress.gov Application Programming
Interface (<https://github.com/LibraryOfCongress/api.congress.gov/>). Functions
exist for all version 3 endpoints, including for bills, amendments, congresses,
summaries, members, reports, communications, nominations, and treaties.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <christopherkenny@fas.harvard.edu>
Diff between congress versions 0.0.1 dated 2022-10-12 and 0.0.3 dated 2024-01-09
congress-0.0.1/congress/R/communication.R |only congress-0.0.1/congress/R/report.R |only congress-0.0.1/congress/man/cong_communication.Rd |only congress-0.0.1/congress/tests/testthat/httptest2 |only congress-0.0.1/congress/tests/testthat/test-communication.R |only congress-0.0.1/congress/tests/testthat/test-report.R |only congress-0.0.3/congress/DESCRIPTION | 15 congress-0.0.3/congress/MD5 | 172 +++++-- congress-0.0.3/congress/NAMESPACE | 11 congress-0.0.3/congress/NEWS.md | 74 +++ congress-0.0.3/congress/R/amendment.R | 232 +++++----- congress-0.0.3/congress/R/bill.R | 39 + congress-0.0.3/congress/R/bound_record.R |only congress-0.0.3/congress/R/committee.R | 44 + congress-0.0.3/congress/R/committee_meeting.R |only congress-0.0.3/congress/R/committee_print.R |only congress-0.0.3/congress/R/committee_report.R |only congress-0.0.3/congress/R/congress-package.R | 1 congress-0.0.3/congress/R/congress.R | 11 congress-0.0.3/congress/R/congress_key.R | 168 +++---- congress-0.0.3/congress/R/daily_record.R |only congress-0.0.3/congress/R/hearing.R |only congress-0.0.3/congress/R/helpers.R | 114 ++++ congress-0.0.3/congress/R/house_communication.R |only congress-0.0.3/congress/R/house_requirement.R |only congress-0.0.3/congress/R/member.R | 214 ++++----- congress-0.0.3/congress/R/nomination.R | 13 congress-0.0.3/congress/R/record.R | 14 congress-0.0.3/congress/R/request_next.R |only congress-0.0.3/congress/R/senate_communication.R |only congress-0.0.3/congress/R/summaries.R | 10 congress-0.0.3/congress/R/treaty.R | 16 congress-0.0.3/congress/README.md | 139 ++++- congress-0.0.3/congress/inst/WORDLIST | 11 congress-0.0.3/congress/inst/httptest2/redact.R | 11 congress-0.0.3/congress/man/cong_amendment.Rd | 3 congress-0.0.3/congress/man/cong_bound_record.Rd |only congress-0.0.3/congress/man/cong_committee.Rd | 13 congress-0.0.3/congress/man/cong_committee_meeting.Rd |only congress-0.0.3/congress/man/cong_committee_print.Rd |only congress-0.0.3/congress/man/cong_committee_report.Rd | 4 congress-0.0.3/congress/man/cong_daily_record.Rd |only congress-0.0.3/congress/man/cong_hearing.Rd |only congress-0.0.3/congress/man/cong_house_communication.Rd |only congress-0.0.3/congress/man/cong_house_requirement.Rd |only congress-0.0.3/congress/man/cong_member.Rd | 2 congress-0.0.3/congress/man/cong_nomination.Rd | 2 congress-0.0.3/congress/man/cong_record.Rd | 4 congress-0.0.3/congress/man/cong_request_next.Rd |only congress-0.0.3/congress/man/cong_senate_communication.Rd |only congress-0.0.3/congress/man/figures/lifecycle-archived.svg |only congress-0.0.3/congress/man/figures/lifecycle-defunct.svg |only congress-0.0.3/congress/man/figures/lifecycle-deprecated.svg |only congress-0.0.3/congress/man/figures/lifecycle-experimental.svg |only congress-0.0.3/congress/man/figures/lifecycle-maturing.svg |only congress-0.0.3/congress/man/figures/lifecycle-questioning.svg |only congress-0.0.3/congress/man/figures/lifecycle-stable.svg |only congress-0.0.3/congress/man/figures/lifecycle-superseded.svg |only congress-0.0.3/congress/tests/testthat/t |only congress-0.0.3/congress/tests/testthat/test-amendment.R | 32 + congress-0.0.3/congress/tests/testthat/test-bill.R | 37 + congress-0.0.3/congress/tests/testthat/test-bound_record.R |only congress-0.0.3/congress/tests/testthat/test-committee.R | 72 ++- congress-0.0.3/congress/tests/testthat/test-committee_meeting.R |only congress-0.0.3/congress/tests/testthat/test-committee_print.R |only congress-0.0.3/congress/tests/testthat/test-committee_report.R |only congress-0.0.3/congress/tests/testthat/test-congress.R | 23 congress-0.0.3/congress/tests/testthat/test-congress_key.R |only congress-0.0.3/congress/tests/testthat/test-daily_record.R |only congress-0.0.3/congress/tests/testthat/test-hearing.R |only congress-0.0.3/congress/tests/testthat/test-house_communication.R |only congress-0.0.3/congress/tests/testthat/test-house_requirement.R |only congress-0.0.3/congress/tests/testthat/test-member.R | 30 + congress-0.0.3/congress/tests/testthat/test-nomination.R | 30 + congress-0.0.3/congress/tests/testthat/test-record.R | 12 congress-0.0.3/congress/tests/testthat/test-request_next.R |only congress-0.0.3/congress/tests/testthat/test-senate_communication.R |only congress-0.0.3/congress/tests/testthat/test-summaries.R | 23 congress-0.0.3/congress/tests/testthat/test-treaty.R | 30 + 79 files changed, 1106 insertions(+), 520 deletions(-)
Title: Download Data from Brazil's Population Census
Description: Download data from Brazil's population census. The package is built
on top of the 'Arrow' platform <https://arrow.apache.org/docs/r/>,
which allows users to work with larger-than-memory census data using
'dplyr' familiar functions. <https://arrow.apache.org/docs/r/articles/arrow.html#analyzing-arrow-data-with-dplyr>.
Author: Rafael H. M. Pereira [aut, cre]
,
Rogerio J. Barbosa [aut] ,
Ipea - Institute for Applied Economic Research [cph, fnd]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between censobr versions 0.2.0 dated 2023-09-30 and 0.3.0 dated 2024-01-09
DESCRIPTION | 6 MD5 | 62 +++--- NEWS.md | 21 ++ R/data_dictionary.R | 2 R/docs_interview_manual.R | 6 R/docs_questionnaire.R | 32 +-- R/onLoad.R | 4 R/read_emigration.R | 12 - R/read_families.R | 4 R/read_households.R | 2 R/read_mortality.R | 14 - R/read_population.R | 2 R/read_tracts.R | 4 README.md | 10 - inst/doc/censobr.R | 37 +--- inst/doc/censobr.Rmd | 37 +--- inst/doc/censobr.html | 109 +++++++---- inst/doc/census_tracts_data.R | 25 +- inst/doc/census_tracts_data.Rmd | 21 -- inst/doc/census_tracts_data.html | 258 +++++++++++++++++++++++++++- inst/doc/documentation.html | 4 man/data_dictionary.Rd | 2 man/questionnaire.Rd | 11 - man/read_families.Rd | 2 man/read_tracts.Rd | 2 tests/tests_rafa/merge_household.R |only tests/tests_rafa/merge_pdfs.R |only tests/tests_rafa/test_rafa.R | 4 tests/testthat.R | 4 tests/testthat/test_docs_interview_manual.R | 4 tests/testthat/test_docs_questionnaire.R | 49 ++++- vignettes/censobr.Rmd | 37 +--- vignettes/census_tracts_data.Rmd | 21 -- 33 files changed, 559 insertions(+), 249 deletions(-)
Title: Goodness-of-Fit Test for Weibull Distribution (Weibullness)
Description: Conducts a goodness-of-fit test for the Weibull distribution (referred to as the weibullness test) and furnishes parameter estimations for both the two-parameter and three-parameter Weibull distributions. Notably, the threshold parameter is derived through correlation from the Weibull plot. Additionally, this package conducts goodness-of-fit assessments for the exponential, Gumbel, and inverse Weibull distributions, accompanied by parameter estimations.
For more details, see Park (2017) <doi:10.23055/ijietap.2017.24.4.2848>,
Park (2018) <doi:10.1155/2018/6056975>, and Park (2023) <doi:10.3390/math11143156>.
This work was supported by the National Research Foundation of Korea (NRF) grants funded by
the Korea government (MSIT) (No. 2022R1A2C1091319, RS-2023-00242528).
Author: Chanseok Park [aut, cre]
Maintainer: Chanseok Park <statpnu@gmail.com>
Diff between weibullness versions 1.23.8 dated 2023-08-08 and 1.24.1 dated 2024-01-09
weibullness-1.23.8/weibullness/R/weibull.estimate.R |only weibullness-1.23.8/weibullness/R/weibullness.R |only weibullness-1.23.8/weibullness/R/wp.plot.R |only weibullness-1.23.8/weibullness/data/Wdata.rda |only weibullness-1.23.8/weibullness/man/print.weibull.estimate.Rd |only weibullness-1.23.8/weibullness/man/print.wp.test.critical.Rd |only weibullness-1.24.1/weibullness/DESCRIPTION | 19 +- weibullness-1.24.1/weibullness/MD5 | 71 ++++++---- weibullness-1.24.1/weibullness/NAMESPACE | 26 ++- weibullness-1.24.1/weibullness/R/Distribution.inverse.Weibull.R |only weibullness-1.24.1/weibullness/R/Estimate.Gumbel.R |only weibullness-1.24.1/weibullness/R/Estimate.Weibull.R |only weibullness-1.24.1/weibullness/R/Estimate.inverse.Weibull.R |only weibullness-1.24.1/weibullness/R/ep.test.R |only weibullness-1.24.1/weibullness/R/gp.test.R |only weibullness-1.24.1/weibullness/R/iwp.test.R |only weibullness-1.24.1/weibullness/R/prob.plot.R |only weibullness-1.24.1/weibullness/R/wp.test.R |only weibullness-1.24.1/weibullness/build/partial.rdb |binary weibullness-1.24.1/weibullness/data/Exponential_Quantiles_from_3_to_1000-bunzip2.rda |only weibullness-1.24.1/weibullness/data/Gumbel_Quantiles_from_3_to_1000-bunzip2.rda |only weibullness-1.24.1/weibullness/data/IW_Quantiles_from_2_to_1000-bunzip2.rda |only weibullness-1.24.1/weibullness/data/Wdata-bunzip2.rda |only weibullness-1.24.1/weibullness/data/Weibull_Quantiles_from_3_to_1000-bunzip2.rda |binary weibullness-1.24.1/weibullness/inst/CITATION | 14 - weibullness-1.24.1/weibullness/inst/NEWS.Rd | 7 weibullness-1.24.1/weibullness/man/Exponential.ANOVA.Quantiles.Rd |only weibullness-1.24.1/weibullness/man/Gumbel.Plot.Quantiles.Rd |only weibullness-1.24.1/weibullness/man/IW.Plot.Quantiles.Rd |only weibullness-1.24.1/weibullness/man/Wdata.Rd | 6 weibullness-1.24.1/weibullness/man/Weibull.Plot.Quantiles.Rd | 2 weibullness-1.24.1/weibullness/man/ep.plot.Rd |only weibullness-1.24.1/weibullness/man/ep.test.Rd |only weibullness-1.24.1/weibullness/man/ep.test.critical.Rd |only weibullness-1.24.1/weibullness/man/ep.test.pvalue.Rd |only weibullness-1.24.1/weibullness/man/gp.plot.Rd |only weibullness-1.24.1/weibullness/man/gp.test.Rd |only weibullness-1.24.1/weibullness/man/gp.test.critical.Rd |only weibullness-1.24.1/weibullness/man/gp.test.pvalue.Rd |only weibullness-1.24.1/weibullness/man/gumbel.gp.Rd |only weibullness-1.24.1/weibullness/man/inverseWeibull.Rd |only weibullness-1.24.1/weibullness/man/invweibull.mle.Rd |only weibullness-1.24.1/weibullness/man/iwp.plot.Rd |only weibullness-1.24.1/weibullness/man/iwp.test.Rd |only weibullness-1.24.1/weibullness/man/iwp.test.critical.Rd |only weibullness-1.24.1/weibullness/man/iwp.test.pvalue.Rd |only weibullness-1.24.1/weibullness/man/weibull.ic.Rd | 11 - weibullness-1.24.1/weibullness/man/weibull.mle.Rd | 8 - weibullness-1.24.1/weibullness/man/weibull.rm.Rd | 5 weibullness-1.24.1/weibullness/man/weibull.threshold.Rd | 6 weibullness-1.24.1/weibullness/man/weibull.wp.Rd | 5 weibullness-1.24.1/weibullness/man/wp.plot.Rd | 16 +- weibullness-1.24.1/weibullness/man/wp.test.Rd | 12 - weibullness-1.24.1/weibullness/man/wp.test.critical.Rd | 4 weibullness-1.24.1/weibullness/man/wp.test.pvalue.Rd | 4 55 files changed, 124 insertions(+), 92 deletions(-)
More information about TwoWayFEWeights at CRAN
Permanent link
Title: Efficient Implementation of K-Means++ Algorithm
Description: Efficient implementation of K-Means++ algorithm. For more
information see (1) "kmeans++ the advantages of the k-means++
algorithm" by David Arthur and Sergei Vassilvitskii (2007),
Proceedings of the eighteenth annual ACM-SIAM symposium on Discrete
algorithms, Society for Industrial and Applied Mathematics,
Philadelphia, PA, USA, pp. 1027-1035, and (2) "The Effectiveness of
Lloyd-Type Methods for the k-Means Problem" by Rafail Ostrovsky, Yuval
Rabani, Leonard J. Schulman and Chaitanya Swamy
<doi:10.1145/2395116.2395117>.
Author: Aviezer Lifshitz [aut, cre],
Amos Tanay [aut],
Weizmann Institute of Science [cph]
Maintainer: Aviezer Lifshitz <aviezer.lifshitz@weizmann.ac.il>
Diff between tglkmeans versions 0.3.11 dated 2023-08-21 and 0.5.4 dated 2024-01-09
DESCRIPTION | 46 MD5 | 65 - NAMESPACE | 7 NEWS.md | 37 R/RcppExports.R | 12 R/TGL_kmeans.R | 172 ++ R/downsample.R |only R/intra_clustering.R | 11 R/misc.R | 2 R/tests.R | 14 R/tglkmeans-package.R | 10 R/zzz.R | 6 README.md | 55 inst/doc/usage.R | 20 inst/doc/usage.Rmd | 16 inst/doc/usage.html | 2238 +++++++++++++++++++-------------------- man/TGL_kmeans.Rd | 26 man/TGL_kmeans_tidy.Rd | 28 man/downsample_matrix.Rd |only man/simulate_data.Rd | 6 man/tglkmeans-package.Rd | 2 src/AParamStat.h | 4 src/DownsampleWorker.cpp |only src/DownsampleWorker.h |only src/KMeans.cpp | 100 - src/KMeans.h | 6 src/Makevars |only src/RcppExports.cpp | 36 src/ReassignWorker.cpp |only src/ReassignWorker.h |only src/TGLkmeans.cpp | 9 src/UpdateMinDistanceWorker.cpp |only src/UpdateMinDistanceWorker.h |only src/downsample.cpp |only tests/testthat.R | 6 tests/testthat/test-clustering.R | 74 - tests/testthat/test-downsample.R |only tests/testthat/test-misc.R | 7 vignettes/usage.Rmd | 16 39 files changed, 1623 insertions(+), 1408 deletions(-)
Title: Estimating Specificity at Controlled Sensitivity, or Vice Versa
Description: Perform biomarker evaluation and comparison in terms of specificity at a controlled sensitivity level, or sensitivity at a controlled specificity level. Point estimation and exact bootstrap of Huang, Parakati, Patil, and Sanda (2023) <doi:10.5705/ss.202021.0020> for the one- and two-biomarker problems are implemented.
Author: Yijian Huang <yhuang5@emory.edu>
Maintainer: Yijian Huang <yhuang5@emory.edu>
Diff between SenSpe versions 1.2 dated 2023-06-21 and 1.3 dated 2024-01-09
DESCRIPTION | 8 - MD5 | 18 +- inst/doc/SenSpe.R | 3 inst/doc/SenSpe.Rmd | 3 inst/doc/SenSpe.html | 321 +++++++++++++++++++++++++-------------------------- man/snsp1m.Rd | 1 man/snsp2mp.Rd | 1 man/snsp2mup.Rd | 1 src/eb2mp.f | 63 ++++++---- vignettes/SenSpe.Rmd | 3 10 files changed, 231 insertions(+), 191 deletions(-)
Title: Particle-Takens Stability
Description: Includes a collection of functions presented in "Measuring stability in ecological systems without static equilibria" by Clark et al. (2022) <doi:10.1002/ecs2.4328> in Ecosphere.
These can be used to estimate the parameters of a stochastic state space model (i.e. a model where
a time series is observed with error). The goal of this package is to estimate the variability
around a deterministic process, both in terms of observation error - i.e. variability due to
imperfect observations that does not influence system state - and in terms of process noise - i.e.
stochastic variation in the actual state of the process. Unlike classical methods for estimating
variability, this package does not necessarily assume that the deterministic state is fixed (i.e.
a fixed-point equilibrium), meaning that variability around a dynamic trajectory can be estimated
(e.g. stochastic fluctuations during predator-prey dynamics).
Author: Adam Clark [aut, cre]
Maintainer: Adam Clark <adam.tclark@gmail.com>
Diff between pttstability versions 1.3 dated 2023-10-24 and 1.4 dated 2024-01-09
DESCRIPTION | 11 ++-- MD5 | 25 +++++---- NAMESPACE | 3 - R/bayesfun.R | 2 R/particlefilter.R | 100 +++++++++----------------------------- R/pttstability_man.R | 39 ++++++-------- R/smapping_functions.R |only man/EDMfun0.Rd | 2 man/S_map_Sugihara1994.Rd |only man/likelihood0.Rd | 2 man/makeblock.Rd |only man/particleFilterLL.Rd | 2 man/particleFilterLL_piecewise.Rd | 51 ++++++++----------- man/process_scof.Rd | 13 +--- man/pttstability.Rd | 38 ++++++-------- 15 files changed, 111 insertions(+), 177 deletions(-)
Title: A Simple Author Handler for Scientific Writing
Description: Handles and formats author information in scientific writing
in 'R Markdown' and 'Quarto'. 'plume' provides easy-to-use and
flexible tools for injecting author metadata in 'YAML' headers as well
as generating author and contribution lists (among others) as strings
from tabular data.
Author: Arnaud Gallou [aut, cre, cph]
Maintainer: Arnaud Gallou <arangacas@gmail.com>
Diff between plume versions 0.2.1 dated 2023-12-09 and 0.2.2 dated 2024-01-09
plume-0.2.1/plume/man/NameHandler.Rd |only plume-0.2.2/plume/DESCRIPTION | 6 plume-0.2.2/plume/MD5 | 81 - plume-0.2.2/plume/NAMESPACE | 1 plume-0.2.2/plume/NEWS.md | 18 plume-0.2.2/plume/R/checkers.R | 102 - plume-0.2.2/plume/R/context-binder.R | 2 plume-0.2.2/plume/R/name-handler.R | 2 plume-0.2.2/plume/R/plume-handler.R | 19 plume-0.2.2/plume/R/plume-package.R | 2 plume-0.2.2/plume/R/plume.R | 25 plume-0.2.2/plume/R/set-default-names.R | 2 plume-0.2.2/plume/R/status-setter.R | 15 plume-0.2.2/plume/R/utils-tbl.R | 22 plume-0.2.2/plume/R/utils.R | 60 plume-0.2.2/plume/R/yaml.R | 23 plume-0.2.2/plume/inst/doc/plume.html | 636 +++++----- plume-0.2.2/plume/inst/doc/working-in-other-languages.R | 25 plume-0.2.2/plume/inst/doc/working-in-other-languages.Rmd | 30 plume-0.2.2/plume/inst/doc/working-in-other-languages.html | 49 plume-0.2.2/plume/man/Plume.Rd | 17 plume-0.2.2/plume/man/PlumeHandler.Rd | 3 plume-0.2.2/plume/man/PlumeQuarto.Rd | 2 plume-0.2.2/plume/man/StatusSetter.Rd | 3 plume-0.2.2/plume/man/StatusSetterPlume.Rd | 3 plume-0.2.2/plume/man/StatusSetterPlumeQuarto.Rd | 3 plume-0.2.2/plume/tests/testthat/_snaps/get-author-list.md | 7 plume-0.2.2/plume/tests/testthat/_snaps/get-contact-details.md | 6 plume-0.2.2/plume/tests/testthat/_snaps/get-contributions.md | 48 plume-0.2.2/plume/tests/testthat/_snaps/get-orcids.md | 12 plume-0.2.2/plume/tests/testthat/_snaps/initialize.md | 96 - plume-0.2.2/plume/tests/testthat/_snaps/plm-template.md | 12 plume-0.2.2/plume/tests/testthat/_snaps/set-status.md | 6 plume-0.2.2/plume/tests/testthat/_snaps/to-yaml.md | 45 plume-0.2.2/plume/tests/testthat/helper-plume.R | 7 plume-0.2.2/plume/tests/testthat/test-get-contributions.R | 9 plume-0.2.2/plume/tests/testthat/test-icon.R | 2 plume-0.2.2/plume/tests/testthat/test-initialize.R | 12 plume-0.2.2/plume/tests/testthat/test-set-main-contributors.R | 17 plume-0.2.2/plume/tests/testthat/test-set-status.R | 3 plume-0.2.2/plume/tests/testthat/test-to-yaml.R | 45 plume-0.2.2/plume/vignettes/working-in-other-languages.Rmd | 30 42 files changed, 877 insertions(+), 631 deletions(-)
Title: Non-Smooth Regularization for Structural Equation Models
Description: Provides regularized structural equation modeling
(regularized SEM) with non-smooth penalty functions (e.g., lasso) building
on 'lavaan'. The package is heavily inspired by the
['regsem'](<https://github.com/Rjacobucci/regsem>) and
['lslx'](<https://github.com/psyphh/lslx>) packages.
Author: Jannik H. Orzek [aut, cre, cph]
Maintainer: Jannik H. Orzek <jannik.orzek@mailbox.org>
Diff between lessSEM versions 1.5.2 dated 2023-06-25 and 1.5.4 dated 2024-01-09
lessSEM-1.5.2/lessSEM/inst/include/lesstimate/LICENSE |only lessSEM-1.5.2/lessSEM/inst/include/lesstimate/lesstimateConfig.cmake |only lessSEM-1.5.2/lessSEM/inst/include/lesstimate/lesstimate_logo.png |only lessSEM-1.5.2/lessSEM/inst/include/lesstimate/lesstimate_logo.svg |only lessSEM-1.5.2/lessSEM/inst/include/lesstimate/vcpkg.json |only lessSEM-1.5.4/lessSEM/DESCRIPTION | 12 lessSEM-1.5.4/lessSEM/MD5 | 144 - lessSEM-1.5.4/lessSEM/NAMESPACE | 4 lessSEM-1.5.4/lessSEM/NEWS.md | 6 lessSEM-1.5.4/lessSEM/R/SEMData.R | 4 lessSEM-1.5.4/lessSEM/R/class-regularizedSEM.R | 12 lessSEM-1.5.4/lessSEM/R/class-regularizedSEMMixedPenalty.R | 12 lessSEM-1.5.4/lessSEM/R/controlOptimizer.R | 4 lessSEM-1.5.4/lessSEM/R/cvRegularizeSEMInternal.R | 4 lessSEM-1.5.4/lessSEM/R/cvRegularizeSmoothSEMInternal.R | 4 lessSEM-1.5.4/lessSEM/R/initializeSEM.R | 29 lessSEM-1.5.4/lessSEM/R/mixedPenalty.R | 20 lessSEM-1.5.4/lessSEM/R/regularizationHelper.R |only lessSEM-1.5.4/lessSEM/R/regularizeSEMWithCustomPenalty.R | 2 lessSEM-1.5.4/lessSEM/R/setupRegularizedSEM.R | 2 lessSEM-1.5.4/lessSEM/README.md | 51 lessSEM-1.5.4/lessSEM/inst/doc/Definition-Variables-and-Multi-Group-SEM.Rmd | 76 lessSEM-1.5.4/lessSEM/inst/doc/Definition-Variables-and-Multi-Group-SEM.html | 76 lessSEM-1.5.4/lessSEM/inst/doc/General-Purpose-Optimization.Rmd | 123 - lessSEM-1.5.4/lessSEM/inst/doc/General-Purpose-Optimization.html | 199 +- lessSEM-1.5.4/lessSEM/inst/doc/Mixed-Penalties.Rmd | 8 lessSEM-1.5.4/lessSEM/inst/doc/Mixed-Penalties.html | 2 lessSEM-1.5.4/lessSEM/inst/doc/Parameter-transformations.Rmd | 88 - lessSEM-1.5.4/lessSEM/inst/doc/Parameter-transformations.html | 95 - lessSEM-1.5.4/lessSEM/inst/doc/The-Structural-Equation-Model.Rmd | 46 lessSEM-1.5.4/lessSEM/inst/doc/The-Structural-Equation-Model.html | 46 lessSEM-1.5.4/lessSEM/inst/doc/lessSEM.Rmd | 64 lessSEM-1.5.4/lessSEM/inst/doc/lessSEM.html | 64 lessSEM-1.5.4/lessSEM/inst/include/lesstimate/Readme.md | 13 lessSEM-1.5.4/lessSEM/inst/include/lesstimate/include/lesstimate/common_headers.h | 33 lessSEM-1.5.4/lessSEM/inst/include/lesstimate/include/lesstimate/glmnet_cappedL1.h | 11 lessSEM-1.5.4/lessSEM/inst/include/lesstimate/include/lesstimate/glmnet_class.h | 5 lessSEM-1.5.4/lessSEM/inst/include/lesstimate/include/lesstimate/glmnet_lasso.h | 8 lessSEM-1.5.4/lessSEM/inst/include/lesstimate/include/lesstimate/glmnet_lsp.h | 11 lessSEM-1.5.4/lessSEM/inst/include/lesstimate/include/lesstimate/glmnet_mcp.h | 13 lessSEM-1.5.4/lessSEM/inst/include/lesstimate/include/lesstimate/glmnet_mixedPenalty.h | 607 ++++--- lessSEM-1.5.4/lessSEM/inst/include/lesstimate/include/lesstimate/glmnet_ridge.h | 3 lessSEM-1.5.4/lessSEM/inst/include/lesstimate/include/lesstimate/glmnet_scad.h | 16 lessSEM-1.5.4/lessSEM/inst/include/lesstimate/include/lesstimate/ista_cappedL1.h | 12 lessSEM-1.5.4/lessSEM/inst/include/lesstimate/include/lesstimate/ista_lasso.h | 10 lessSEM-1.5.4/lessSEM/inst/include/lesstimate/include/lesstimate/ista_lsp.h | 10 lessSEM-1.5.4/lessSEM/inst/include/lesstimate/include/lesstimate/ista_mcp.h | 10 lessSEM-1.5.4/lessSEM/inst/include/lesstimate/include/lesstimate/ista_mixedPenalty.h | 837 +++++----- lessSEM-1.5.4/lessSEM/inst/include/lesstimate/include/lesstimate/ista_ridge.h | 4 lessSEM-1.5.4/lessSEM/inst/include/lesstimate/include/lesstimate/ista_scad.h | 10 lessSEM-1.5.4/lessSEM/inst/include/lesstimate/include/lesstimate/model.h | 31 lessSEM-1.5.4/lessSEM/inst/include/lesstimate/include/lesstimate/penalty.h | 2 lessSEM-1.5.4/lessSEM/inst/include/lesstimate/include/lesstimate/simplified_interfaces.h | 11 lessSEM-1.5.4/lessSEM/inst/include/lesstimate/include/lesstimate/smoothPenalty.h | 11 lessSEM-1.5.4/lessSEM/man/controlBFGS.Rd | 2 lessSEM-1.5.4/lessSEM/man/controlGlmnet.Rd | 2 lessSEM-1.5.4/lessSEM/man/covariances.Rd |only lessSEM-1.5.4/lessSEM/man/dot-labelLavaanParameters.Rd |only lessSEM-1.5.4/lessSEM/man/figures/README-unnamed-chunk-3-1.png |only lessSEM-1.5.4/lessSEM/man/figures/README-unnamed-chunk-4-1.png |binary lessSEM-1.5.4/lessSEM/man/figures/README-unnamed-chunk-7-1.png |only lessSEM-1.5.4/lessSEM/man/figures/README-unnamed-chunk-9-1.png |only lessSEM-1.5.4/lessSEM/man/loadings.Rd |only lessSEM-1.5.4/lessSEM/man/mixedPenalty.Rd | 20 lessSEM-1.5.4/lessSEM/man/regressions.Rd |only lessSEM-1.5.4/lessSEM/man/variances.Rd |only lessSEM-1.5.4/lessSEM/src/SEM.cpp | 2 lessSEM-1.5.4/lessSEM/src/findStringInVector.h | 4 lessSEM-1.5.4/lessSEM/src/glmnet_generalPurposeMixedPenalty.cpp | 6 lessSEM-1.5.4/lessSEM/src/glmnet_mixed.cpp | 3 lessSEM-1.5.4/lessSEM/src/ista_generalPurposeMixedPenalty.cpp | 10 lessSEM-1.5.4/lessSEM/src/ista_mixed.cpp | 5 lessSEM-1.5.4/lessSEM/src/mgSEM.cpp | 148 + lessSEM-1.5.4/lessSEM/src/mgSEM.h | 11 lessSEM-1.5.4/lessSEM/vignettes/Definition-Variables-and-Multi-Group-SEM.Rmd | 76 lessSEM-1.5.4/lessSEM/vignettes/General-Purpose-Optimization.Rmd | 123 - lessSEM-1.5.4/lessSEM/vignettes/Mixed-Penalties.Rmd | 8 lessSEM-1.5.4/lessSEM/vignettes/Parameter-transformations.Rmd | 88 - lessSEM-1.5.4/lessSEM/vignettes/The-Structural-Equation-Model.Rmd | 46 lessSEM-1.5.4/lessSEM/vignettes/lessSEM.Rmd | 64 80 files changed, 2064 insertions(+), 1419 deletions(-)
Title: Diffusion Model of Conflict (DMC) in Reaction Time Tasks
Description: DMC model simulation detailed in Ulrich, R., Schroeter, H., Leuthold, H., & Birngruber, T. (2015).
Automatic and controlled stimulus processing in conflict tasks: Superimposed diffusion processes and delta functions.
Cognitive Psychology, 78, 148-174. Ulrich et al. (2015) <doi:10.1016/j.cogpsych.2015.02.005>.
Decision processes within choice reaction-time (CRT) tasks are often modelled using evidence accumulation models (EAMs),
a variation of which is the Diffusion Decision Model (DDM, for a review, see Ratcliff & McKoon, 2008).
Ulrich et al. (2015) introduced a Diffusion Model for Conflict tasks (DMC). The DMC model combines common
features from within standard diffusion models with the addition of superimposed controlled and automatic activation.
The DMC model is used to explain distributional reaction time (and error rate) patterns in common behavioural
conflict-like tasks (e.g., Flanker task, Simon task). This R-package implements the DMC model and provides functional [...truncated...]
Author: Ian G. Mackenzie [cre, aut],
Carolin Dudschig [aut]
Maintainer: Ian G. Mackenzie <ian.mackenzie@uni-tuebingen.de>
Diff between DMCfun versions 2.0.2 dated 2021-10-25 and 3.5.2 dated 2024-01-09
DMCfun-2.0.2/DMCfun/data/flankerData.txt |only DMCfun-2.0.2/DMCfun/data/simonData.txt |only DMCfun-2.0.2/DMCfun/man/mean.dmcfit.Rd |only DMCfun-3.5.2/DMCfun/DESCRIPTION | 21 DMCfun-3.5.2/DMCfun/MD5 | 93 DMCfun-3.5.2/DMCfun/NAMESPACE | 17 DMCfun-3.5.2/DMCfun/R/dmcData.R | 151 - DMCfun-3.5.2/DMCfun/R/dmcFit.R | 699 +++-- DMCfun-3.5.2/DMCfun/R/dmcSim.R | 175 - DMCfun-3.5.2/DMCfun/R/plot.R | 2436 ++++++++++++++----- DMCfun-3.5.2/DMCfun/R/summary.R | 113 DMCfun-3.5.2/DMCfun/R/zzz.R | 34 DMCfun-3.5.2/DMCfun/README.md | 26 DMCfun-3.5.2/DMCfun/build |only DMCfun-3.5.2/DMCfun/data/flankerData.rda |binary DMCfun-3.5.2/DMCfun/data/flankerData.txt.gz |only DMCfun-3.5.2/DMCfun/data/simonData.rda |binary DMCfun-3.5.2/DMCfun/data/simonData.txt.gz |only DMCfun-3.5.2/DMCfun/inst/dmcSimApp/app.R | 98 DMCfun-3.5.2/DMCfun/man/DMCfun-package.Rd | 2 DMCfun-3.5.2/DMCfun/man/calculateBinProbabilities.Rd | 4 DMCfun-3.5.2/DMCfun/man/calculateDelta.Rd | 1 DMCfun-3.5.2/DMCfun/man/dmcCombineObservedData.Rd | 5 DMCfun-3.5.2/DMCfun/man/dmcFit.Rd | 47 DMCfun-3.5.2/DMCfun/man/dmcFitDE.Rd | 36 DMCfun-3.5.2/DMCfun/man/dmcFitSubject.Rd | 43 DMCfun-3.5.2/DMCfun/man/dmcFitSubjectDE.Rd | 35 DMCfun-3.5.2/DMCfun/man/dmcObservedData.Rd | 11 DMCfun-3.5.2/DMCfun/man/dmcSim.Rd | 18 DMCfun-3.5.2/DMCfun/man/dmcSims.Rd | 8 DMCfun-3.5.2/DMCfun/man/mean.dmcfit_subject.Rd |only DMCfun-3.5.2/DMCfun/man/plot.dmcfit.Rd | 25 DMCfun-3.5.2/DMCfun/man/plot.dmcfit_subject.Rd |only DMCfun-3.5.2/DMCfun/man/plot.dmcfits.Rd |only DMCfun-3.5.2/DMCfun/man/plot.dmcfits_subject.Rd |only DMCfun-3.5.2/DMCfun/man/plot.dmclist.Rd | 24 DMCfun-3.5.2/DMCfun/man/plot.dmcob.Rd | 16 DMCfun-3.5.2/DMCfun/man/plot.dmcobs.Rd | 26 DMCfun-3.5.2/DMCfun/man/plot.dmcsim.Rd | 28 DMCfun-3.5.2/DMCfun/man/rtDist.Rd | 2 DMCfun-3.5.2/DMCfun/man/summary.dmcfit.Rd | 4 DMCfun-3.5.2/DMCfun/man/summary.dmcfit_subject.Rd |only DMCfun-3.5.2/DMCfun/man/summary.dmcfits.Rd |only DMCfun-3.5.2/DMCfun/man/summary.dmcfits_subject.Rd |only DMCfun-3.5.2/DMCfun/man/summary.dmcsim.Rd | 1 DMCfun-3.5.2/DMCfun/src/dmcCppR.cpp | 68 DMCfun-3.5.2/DMCfun/src/inDMC.cpp | 16 DMCfun-3.5.2/DMCfun/src/inDMC.h | 72 DMCfun-3.5.2/DMCfun/src/outDMC.cpp | 155 - DMCfun-3.5.2/DMCfun/src/runDMC.cpp | 512 ++- DMCfun-3.5.2/DMCfun/src/runDMC.h | 64 DMCfun-3.5.2/DMCfun/tests/testthat/test-dmcFit.R | 4 DMCfun-3.5.2/DMCfun/tests/testthat/test-dmcSim.R | 4 DMCfun-3.5.2/DMCfun/tests/testthat/test-plot.R | 19 54 files changed, 3542 insertions(+), 1571 deletions(-)
Title: Multidimensional Scaling for Big Data
Description: MDS is a statistic tool for reduction of dimensionality, using as input a distance
matrix of dimensions n × n. When n is large, classical algorithms suffer from
computational problems and MDS configuration can not be obtained.
With this package, we address these problems by means of six algorithms, being two of them
original proposals:
- Landmark MDS proposed by De Silva V. and JB. Tenenbaum (2004).
- Interpolation MDS proposed by Delicado P. and C. Pachón-García (2021)
<arXiv:2007.11919> (original proposal).
- Reduced MDS proposed by Paradis E (2018).
- Pivot MDS proposed by Brandes U. and C. Pich (2007)
- Divide-and-conquer MDS proposed by Delicado P. and C. Pachón-García (2021)
<arXiv:2007.11919> (original proposal).
- Fast MDS, proposed by Yang, T., J. Liu, L. McMillan and W. Wang (2006).
Author: Cristian Pachon Garcia [aut, cre]
,
Pedro Delicado [aut]
Maintainer: Cristian Pachon Garcia <cc.pachon@gmail.com>
Diff between bigmds versions 2.0.1 dated 2021-10-05 and 3.0.0 dated 2024-01-09
DESCRIPTION | 30 +-- MD5 | 41 ++-- NAMESPACE | 8 NEWS.md | 4 R/divide_conquer_mds.R | 298 +++++++++++++++++-------------- R/fast_mds.R | 269 +++++++++++++-------------- R/interpolation_mds.R | 232 ++++++++++-------------- R/landmark_mds.R |only R/pivot_mds.R |only R/reduced_mds.R |only R/utils.R | 115 +++++++++-- README.md | 151 ++++++++------- inst/CITATION | 2 man/divide_conquer_mds.Rd | 34 --- man/fast_mds.Rd | 36 --- man/interpolation_mds.Rd | 36 --- man/landmark_mds.Rd |only man/pivot_mds.Rd |only man/reduced_mds.Rd |only tests/testthat/test-divide_conquer_mds.R | 21 -- tests/testthat/test-fast_mds.R | 18 - tests/testthat/test-interpolation_mds.R | 4 tests/testthat/test-landmark_mds.R |only tests/testthat/test-pivot_mds.R |only tests/testthat/test-reduced_mds.R |only tests/testthat/test-utils.R | 20 -- 26 files changed, 650 insertions(+), 669 deletions(-)
Title: USGS ScienceBase Tools
Description: Tools for interacting with U.S. Geological Survey ScienceBase
<https://www.sciencebase.gov> interfaces. ScienceBase is a data cataloging and
collaborative data management platform. Functions included for querying
ScienceBase, and creating and fetching datasets.
Author: David Blodgett [cre],
Luke Winslow [aut],
Scott Chamberlain [ctb],
Alison Appling [ctb],
Jordan Read [ctb]
Maintainer: David Blodgett <dblodgett@usgs.gov>
Diff between sbtools versions 1.3.0 dated 2023-12-20 and 1.3.1 dated 2024-01-09
DESCRIPTION | 6 MD5 | 48 +++--- NAMESPACE | 1 NEWS.md | 4 R/AAA.R | 2 R/authenticate_sb.R | 55 +++++-- R/current_session.R | 4 R/identifier_exists.R | 56 +++---- R/item_get.R | 210 +++++++++++++-------------- R/item_list_files.R | 326 +++++++++++++++++++++--------------------- R/item_update_identifier.R | 176 +++++++++++----------- R/sb_item.R | 140 +++++++++--------- README.md | 174 +++++++++++----------- inst/CITATION | 2 inst/doc/sbtools.R | 42 ++--- inst/doc/sbtools.Rmd | 4 inst/doc/sbtools.html | 98 +++++------- man/identifier_exists.Rd | 64 ++++---- man/item_get.Rd | 76 ++++----- man/item_get_parent.Rd | 56 +++---- man/item_list_files.Rd | 130 ++++++++-------- man/sbitem.Rd | 90 +++++------ tests/testthat/test-auth-rm.R | 124 +++++++-------- tests/testthat/test-auth.R | 4 vignettes/sbtools.Rmd | 4 25 files changed, 963 insertions(+), 933 deletions(-)
Title: REDCap Castellated Data Handling
Description: Originally forked from the R part of 'REDCapRITS' by Paul Egeler.
See <https://github.com/pegeler/REDCapRITS>.
Handles castellated datasets from 'REDCap' projects with repeating instruments.
Assists in casting tidy tables from raw 'REDCap' data exports for each
repeated instrument. Keeps a focused data export approach, by allowing to
only export required data from the database.
'REDCap' (Research Electronic Data Capture) is a secure, web-based software
platform designed to support data capture for research studies, providing
1) an intuitive interface for validated data capture; 2) audit trails for
tracking data manipulation and export procedures; 3) automated export
procedures for seamless data downloads to common statistical packages; and
4) procedures for data integration and interoperability with external sources
(Harris et al (2009) <doi:10.1016/j.jbi.2008.08.010>;
Harris et al (2019) <doi:10.1016/j.jbi.2019.103208>).
Author: Andreas Gammelgaard Damsbo [aut, cre]
,
Paul Egeler [aut]
Maintainer: Andreas Gammelgaard Damsbo <agdamsbo@clin.au.dk>
Diff between REDCapCAST versions 23.12.1 dated 2023-12-20 and 24.1.1 dated 2024-01-09
DESCRIPTION | 15 +-- MD5 | 12 +- NEWS.md | 6 + R/read_redcap_tables.R | 44 +++++---- README.md | 3 inst/doc/Introduction.html | 214 ++++++++++++++++++++++----------------------- man/read_redcap_tables.Rd | 5 - 7 files changed, 161 insertions(+), 138 deletions(-)
Title: Image-Based Identification of Color Based on Rayner (1970)
Terminology and Known Fungal Pigments
Description: Image-based color matching using the "Mycological Colour Chart" by Rayner (1970, ISBN:9780851980263) and its associated fungal pigments. This package will assist mycologists in identifying color during morphological analysis.
Author: Nina Rose Zapanta [aut] ,
Rhenz Hannah Santos [aut] ,
Jericho Ivan Pineda [aut] ,
Lourdes Alvarez [aut, ths] ,
Chester Deocaris [aut, ths, cre]
Maintainer: Chester Deocaris <ccdeocaris@pup.edu.ph>
Diff between PUPMCR versions 0.1.0 dated 2022-04-25 and 0.2.0 dated 2024-01-09
PUPMCR-0.1.0/PUPMCR/R/imageanalysis.R |only PUPMCR-0.1.0/PUPMCR/inst/LookupTable.xlsx |only PUPMCR-0.1.0/PUPMCR/man/raynercolor.Rd |only PUPMCR-0.2.0/PUPMCR/DESCRIPTION | 27 +++++++++++++------------- PUPMCR-0.2.0/PUPMCR/MD5 | 23 +++++++++++++++++----- PUPMCR-0.2.0/PUPMCR/NAMESPACE | 8 ++++++- PUPMCR-0.2.0/PUPMCR/R/fungalpigments.LAB.R |only PUPMCR-0.2.0/PUPMCR/R/fungalpigments.RGB.R |only PUPMCR-0.2.0/PUPMCR/R/hue.LAB.R |only PUPMCR-0.2.0/PUPMCR/R/hue.RGB.R |only PUPMCR-0.2.0/PUPMCR/R/raynercolor.LAB.R |only PUPMCR-0.2.0/PUPMCR/R/raynercolor.RGB.R |only PUPMCR-0.2.0/PUPMCR/inst/LookupTableV2.xlsx |only PUPMCR-0.2.0/PUPMCR/man/fungalpigments.LAB.Rd |only PUPMCR-0.2.0/PUPMCR/man/fungalpigments.RGB.Rd |only PUPMCR-0.2.0/PUPMCR/man/hue.LAB.Rd |only PUPMCR-0.2.0/PUPMCR/man/hue.RGB.Rd |only PUPMCR-0.2.0/PUPMCR/man/raynercolor.LAB.Rd |only PUPMCR-0.2.0/PUPMCR/man/raynercolor.RGB.Rd |only PUPMCR-0.2.0/PUPMCR/tests |only 20 files changed, 39 insertions(+), 19 deletions(-)
Title: Eigenvalues and Singular Values and Vectors from Large Matrices
Description: R interface to 'PRIMME' <https://www.cs.wm.edu/~andreas/software/>, a C library for computing a few
eigenvalues and their corresponding eigenvectors of a real symmetric or complex
Hermitian matrix, or generalized Hermitian eigenproblem. It can also compute
singular values and vectors of a square or rectangular matrix. 'PRIMME' finds
largest, smallest, or interior singular/eigenvalues and can use preconditioning
to accelerate convergence. General description of the methods are provided in the papers
Stathopoulos (2010, <doi:10.1145/1731022.1731031>) and Wu (2017, <doi:10.1137/16M1082214>).
See 'citation("PRIMME")' for details.
Author: Eloy Romero [aut, cre],
Andreas Stathopoulos [aut],
Lingfei Wu [aut],
College of William & Mary [cph]
Maintainer: Eloy Romero <eloy@cs.wm.edu>
Diff between PRIMME versions 3.2-5 dated 2023-09-30 and 3.2-6 dated 2024-01-09
DESCRIPTION | 11 - MD5 | 16 - R/RcppExports.R | 2 src/RcppExports.cpp | 28 +- src/primme/include/common.h | 4 src/primme/include/cublas_wrapper.h | 222 +++++++++++++++++++++ src/primme/linalg/blaslapack.cpp | 2 src/primme/linalg/cublas_wrapper.cpp | 359 +++++++++++++++++------------------ src/primme/linalg/magma_wrapper.cpp | 10 9 files changed, 437 insertions(+), 217 deletions(-)
Title: Dirichlet Process Bayesian Clustering, Profile Regression
Description: Bayesian clustering using a Dirichlet process mixture model. This model is an alternative to regression models, non-parametrically linking a response vector to covariate data through cluster membership. The package allows Bernoulli, Binomial, Poisson, Normal, survival and categorical response, as well as Normal and discrete covariates. It also allows for fixed effects in the response model, where a spatial CAR (conditional autoregressive) term can be also included. Additionally, predictions may be made for the response, and missing values for the covariates are handled. Several samplers and label switching moves are implemented along with diagnostic tools to assess convergence. A number of R functions for post-processing of the output are also provided. In addition to fitting mixtures, it may additionally be of interest to determine which covariates actively drive the mixture components. This is implemented in the package as variable selection. The main reference for the package is Liv [...truncated...]
Author: David I. Hastie, Silvia Liverani <liveranis@gmail.com> and Sylvia Richardson with contributions from Aurore J. Lavigne, Lucy Leigh, Lamiae Azizi, Xi Liu, Ruizhu Huang, Austin Gratton, Wei Jing
Maintainer: Silvia Liverani <liveranis@gmail.com>
Diff between PReMiuM versions 3.2.11 dated 2023-11-13 and 3.2.13 dated 2024-01-09
ChangeLog | 5 +++++ DESCRIPTION | 6 +++--- MD5 | 8 ++++---- src/include/MCMC/sampler.h | 3 ++- src/postProcess.cpp | 4 ++-- 5 files changed, 16 insertions(+), 10 deletions(-)
Title: BFV, BGV, CKKS Schema for Fully Homomorphic Encryption
Description: Implements the Brakerski-Fan-Vercauteren (BFV, 2012) <https://eprint.iacr.org/2012/144>, Brakerski-Gentry-Vaikuntanathan (BGV, 2014) <doi:10.1145/2633600>, and Cheon-Kim-Kim-Song (CKKS, 2016) <https://eprint.iacr.org/2016/421.pdf> schema for Fully Homomorphic Encryption. The included vignettes demonstrate the encryption procedures.
Author: Bastiaan Quast [aut, cre]
Maintainer: Bastiaan Quast <bquast@gmail.com>
Diff between HomomorphicEncryption versions 0.3.0 dated 2023-12-09 and 0.9.0 dated 2024-01-09
DESCRIPTION | 8 +-- MD5 | 68 ++++++++++++++++++++----- NAMESPACE | 11 ++++ R/CKKS.R |only README.md | 6 +- build/vignette.rds |binary inst/doc/BFV-2.R |only inst/doc/BFV-2.Rmd |only inst/doc/BFV-2.html |only inst/doc/BFV-addition.html | 4 - inst/doc/BFV.R | 20 ++++++- inst/doc/BFV.Rmd | 35 +++++++++++-- inst/doc/BFV.html | 88 +++++++++++++++++++++------------ inst/doc/BGV-2.R |only inst/doc/BGV-2.Rmd |only inst/doc/BGV-2.html |only inst/doc/BGV-addition-2.R |only inst/doc/BGV-addition-2.Rmd |only inst/doc/BGV-addition-2.html |only inst/doc/CKKS-encode-2.R |only inst/doc/CKKS-encode-2.Rmd |only inst/doc/CKKS-encode-2.html |only inst/doc/CKKS-encode-encrypt-2.R |only inst/doc/CKKS-encode-encrypt-2.Rmd |only inst/doc/CKKS-encode-encrypt-2.html |only inst/doc/CKKS-encode-encrypt.R |only inst/doc/CKKS-encode-encrypt.Rmd |only inst/doc/CKKS-encode-encrypt.html |only inst/doc/CKKS-encode.R |only inst/doc/CKKS-encode.Rmd |only inst/doc/CKKS-encode.html |only inst/doc/CKKS.R | 8 +-- inst/doc/CKKS.Rmd | 8 +-- inst/doc/CKKS.html | 11 +--- man/compute_basis_coordinates.Rd |only man/coordinate_wise_random_rounding.Rd |only man/decode.Rd |only man/encode.Rd |only man/pi_function.Rd |only man/pi_inverse.Rd |only man/round_coordinates.Rd |only man/sigma_R_discretization.Rd |only man/sigma_function.Rd |only man/sigma_inverse.Rd |only man/vandermonde.Rd |only tests/testthat/test-BFV.R | 4 + vignettes/BFV-2.Rmd |only vignettes/BFV.Rmd | 35 +++++++++++-- vignettes/BGV-2.Rmd |only vignettes/BGV-addition-2.Rmd |only vignettes/CKKS-encode-2.Rmd |only vignettes/CKKS-encode-encrypt-2.Rmd |only vignettes/CKKS-encode-encrypt.Rmd |only vignettes/CKKS-encode.Rmd |only vignettes/CKKS.Rmd | 8 +-- 55 files changed, 228 insertions(+), 86 deletions(-)
More information about HomomorphicEncryption at CRAN
Permanent link
Title: Biological Geometries
Description: Is used to simulate and fit biological geometries. 'biogeom' incorporates several novel universal parametric equations that can generate the profiles of bird eggs, flowers, linear and lanceolate leaves, seeds, starfish, and tree-rings (Gielis (2003) <doi:10.3732/ajb.90.3.333>; Shi et al. (2020) <doi:10.3390/sym12040645>), three growth-rate curves representing the ontogenetic growth trajectories of animals and plants against time, and the axially symmetrical and integral forms of all these functions (Shi et al. (2017) <doi:10.1016/j.ecolmodel.2017.01.012>; Shi et al. (2021) <doi:10.3390/sym13081524>). The optimization method proposed by Nelder and Mead (1965) <doi:10.1093/comjnl/7.4.308> was used to estimate model parameters. 'biogeom' includes several real data sets of the boundary coordinates of natural shapes, including avian eggs, fruit, lanceolate and ovate leaves, tree rings, seeds, and sea stars,and can be potentially applied to other natural shapes. [...truncated...]
Author: Peijian Shi [aut, cre],
Johan Gielis [aut],
Brady K. Quinn [aut]
Maintainer: Peijian Shi <pjshi@njfu.edu.cn>
Diff between biogeom versions 1.3.7 dated 2023-10-21 and 1.4.1 dated 2024-01-09
DESCRIPTION | 8 +-- MD5 | 46 ++++++++++-------- R/MBriereE.R | 6 +- R/MLRFE.R | 6 +- R/MPerformanceE.R |only R/MbetaE.R | 6 +- R/areaovate.R | 30 ++++++++++- R/curveovate.R | 4 - R/fitLorenz.R |only R/fitovate.R | 27 +++++++--- R/fitsigmoid.R | 126 +++++++++++++++++++++++++++++++++++++++++++++++++- R/sigmoid.R | 28 ++++++++++- build/partial.rdb |binary data/LeafSizeDist.rda |only man/LeafSizeDist.Rd |only man/MBriereE.Rd | 27 +++++----- man/MLRFE.Rd | 37 +++++++------- man/MPerformanceE.Rd |only man/MbetaE.Rd | 27 +++++----- man/areaovate.Rd | 6 +- man/bilat.Rd | 2 man/curveovate.Rd | 33 +++++++++---- man/fitLorenz.Rd |only man/fitovate.Rd | 60 +++++++++++++++++++---- man/fitsigmoid.Rd | 47 ++++++++++++++---- man/sigmoid.Rd | 17 +++++- man/whitespruce.Rd | 6 +- 27 files changed, 415 insertions(+), 134 deletions(-)
Title: Bayesian Seemingly Unrelated Regression
Description: Bayesian seemingly unrelated regression with general variable selection and dense/sparse covariance matrix. The sparse seemingly unrelated regression is described in Bottolo et al. (2021) <doi:10.1111/rssc.12490>, the software paper is in Zhao et al. (2021) <doi:10.18637/jss.v100.i11>, and the model with random effects is described in Zhao et al. (2023) <doi:10.1093/jrsssc/qlad102>.
Author: Marco Banterle [aut],
Zhi Zhao [aut, cre],
Leonardo Bottolo [ctb],
Sylvia Richardson [ctb],
Waldir Leoncio [ctb],
Alex Lewin [aut],
Manuela Zucknick [aut]
Maintainer: Zhi Zhao <zhi.zhao@medisin.uio.no>
Diff between BayesSUR versions 2.1-5 dated 2023-11-30 and 2.1-6 dated 2024-01-09
BayesSUR-2.1-5/BayesSUR/vignettes/BayesSUR-RE.html |only BayesSUR-2.1-6/BayesSUR/DESCRIPTION | 12 +- BayesSUR-2.1-6/BayesSUR/MD5 | 19 ++- BayesSUR-2.1-6/BayesSUR/NEWS.md | 8 + BayesSUR-2.1-6/BayesSUR/README.md | 17 +-- BayesSUR-2.1-6/BayesSUR/build/vignette.rds |binary BayesSUR-2.1-6/BayesSUR/cleanup | 4 BayesSUR-2.1-6/BayesSUR/inst/CITATION | 4 BayesSUR-2.1-6/BayesSUR/inst/doc/BayesSUR-RE.R |only BayesSUR-2.1-6/BayesSUR/inst/doc/BayesSUR-RE.Rmd |only BayesSUR-2.1-6/BayesSUR/inst/doc/BayesSUR-RE.html |only BayesSUR-2.1-6/BayesSUR/man/figures |only BayesSUR-2.1-6/BayesSUR/vignettes/BayesSUR-RE.Rmd | 100 ++++++++++++++++++++- 13 files changed, 132 insertions(+), 32 deletions(-)
Title: Analysis of Basketball Data
Description: Collection of tools to work with European basketball data. Functions available are related to friendly
web scraping, data management and visualization. Data were obtained from <https://www.euroleaguebasketball.net/euroleague/>,
<https://www.euroleaguebasketball.net/eurocup/> and <https://www.acb.com/>, following the instructions
of their respectives robots.txt files, when available. Box score data are available for the three leagues.
Play-by-play data are also available for the Spanish league. Methods for analysis include a population pyramid,
2D plots, circular plots of players' percentiles, plots of players' monthly/yearly stats, team heatmaps,
team shooting plots, team four factors plots, cross-tables with the results of regular season games,
maps of nationalities, combinations of lineups, possessions-related variables, timeouts,
performance by periods, personal fouls and offensive rebounds.
Please see Vinue (2020) <doi:10.1089/big.2018.0124>.
Author: Guillermo Vinue
Maintainer: Guillermo Vinue <Guillermo.Vinue@uv.es>
Diff between BAwiR versions 1.3.1 dated 2023-11-14 and 1.3.2 dated 2024-01-09
DESCRIPTION | 12 ++++++------ MD5 | 20 ++++++++++++-------- NAMESPACE | 3 +++ NEWS | 4 ++++ R/do_process_acb_pbp.R |only R/scraping_games_euro.R | 3 +++ data/acb_shields.RData |only inst/doc/BAwiR.html | 4 ++-- inst/doc/BAwiR_pbp.html | 4 ++-- man/BAwiR-package.Rd | 6 ++++-- man/acb_shields.Rd |only man/do_process_acb_pbp.Rd |only man/scraping_games_euro.Rd | 5 ++++- 13 files changed, 40 insertions(+), 21 deletions(-)
Title: Sentiment Analysis for Text, Image and Video using Transformer
Models
Description: Implements sentiment analysis using huggingface <https://huggingface.co> transformer zero-shot classification model pipelines for text and image data. The default text pipeline is Cross-Encoder's DistilRoBERTa <https://huggingface.co/cross-encoder/nli-distilroberta-base> and default image/video pipeline is Open AI's CLIP <https://huggingface.co/openai/clip-vit-base-patch32>. All other zero-shot classification model pipelines can be implemented using their model name from <https://huggingface.co/models?pipeline_tag=zero-shot-classification>.
Author: Alexander Christensen [aut] ,
Hudson Golino [aut] ,
Aleksandar Tomasevic [aut, cre]
Maintainer: Aleksandar Tomasevic <atomashevic@gmail.com>
Diff between transforEmotion versions 0.1.1 dated 2022-05-11 and 0.1.4 dated 2024-01-09
DESCRIPTION | 40 - MD5 | 92 +- NAMESPACE | 47 + NEWS | 59 + R/dlo.R |only R/emotions.R | 74 +- R/emoxicon_scores.R | 272 ++++---- R/image_scores.R |only R/neo_ipip_extraversion.R | 46 - R/nlp_scores.R | 704 +++++++++++----------- R/punctuate.R | 134 ++-- R/setup_miniconda.R | 89 +- R/setup_modules.R | 89 +- R/stop_words.R | 36 - R/tinytrolls.R | 72 +- R/transforEmotion.R | 42 - R/transformer_scores.R | 635 ++++++++++---------- R/utils-transforEmotion.R | 1234 ++++++++++++++++++++-------------------- R/video_scores.R |only R/zzz.R | 27 README.md |only build/partial.rdb |only build/vignette.rds |binary data/datalist | 8 inst/CITATION | 33 - inst/doc/Setup.R | 146 +++- inst/doc/Setup.Rmd | 284 ++++++--- inst/doc/Setup.pdf |binary inst/extdata |only inst/python |only man/MASS_mvrnorm.Rd |only man/calculate_moving_average.Rd |only man/conda_check.Rd |only man/dlo_dynamics.Rd |only man/emotions.Rd | 70 +- man/emoxicon_scores.Rd | 110 +-- man/emphasize.Rd |only man/figures |only man/generate_observables.Rd |only man/generate_q.Rd |only man/image_scores.Rd |only man/neo_ipip_extraversion.Rd | 50 - man/nlp_scores.Rd | 349 +++++------ man/plot_sim_emotions.Rd |only man/punctuate.Rd | 90 +- man/setup_miniconda.Rd | 35 - man/setup_modules.Rd | 60 - man/simulate_video.Rd |only man/stop_words.Rd | 40 - man/tinytrolls.Rd | 66 +- man/transforEmotion-package.Rd | 48 - man/transformer_scores.Rd | 311 ++++------ man/video_scores.Rd |only tests |only vignettes/Setup.Rmd | 284 ++++++--- 55 files changed, 3001 insertions(+), 2675 deletions(-)
More information about transforEmotion at CRAN
Permanent link
Title: Data from all Seasons of Survivor (US) TV Series in Tidy Format
Description: Several datasets which detail the results and events of each season of Survivor. This includes
details on the cast, voting history, immunity and reward challenges, jury votes and viewers. This data is
useful for practicing data wrangling, graph analytics and analysing how each season of Survivor played out.
Includes 'ggplot2' scales and colour palettes for visualisation.
Author: Daniel Oehm [aut, cre],
Carly Levitz [ctb],
Dario Mavec [ctb]
Maintainer: Daniel Oehm <danieloehm@gmail.com>
Diff between survivoR versions 2.1.0 dated 2023-06-20 and 2.3.0 dated 2024-01-09
DESCRIPTION | 6 - MD5 | 74 ++++++++------- NAMESPACE | 2 NEWS.md | 24 ++++ R/datasets.R | 119 ++++++++++++++++++++---- R/helpers-ne.R | 23 ++++ R/helpers.R | 6 - R/scales.R | 2 R/server-conf.R | 95 ++++++++++++++++++- R/ui-conf.R | 7 + README.md | 198 ++++++++++++++++++++++++----------------- data/advantage_details.rda |binary data/advantage_movement.rda |binary data/auction_details.rda |only data/boot_mapping.rda |binary data/castaway_details.rda |binary data/castaways.rda |binary data/challenge_description.rda |binary data/challenge_results.rda |binary data/confessionals.rda |binary data/episodes.rda |only data/jury_votes.rda |binary data/season_palettes.rda |binary data/season_summary.rda |binary data/survivor_auction.rda |binary data/tribe_colours.rda |binary data/tribe_mapping.rda |binary data/viewers.rda |binary data/vote_history.rda |binary inst/readme.html | 9 - inst/readme.md | 5 - man/advantage_movement.Rd | 8 - man/auction_details.Rd |only man/castaways.Rd | 9 + man/challenge_description.Rd | 25 +++-- man/challenge_results.Rd | 6 - man/episodes.Rd |only man/launch_confessional_app.Rd | 4 man/season_summary.Rd | 2 man/survivor_auction.Rd | 6 + 40 files changed, 449 insertions(+), 181 deletions(-)
Title: Reconstruction of Daily Data - Precipitation
Description: Applies quality control to daily precipitation observations;
reconstructs the original series by estimating precipitation in missing values; and
creates gridded datasets of daily precipitation.
Author: Roberto Serrano-Notivoli [aut, cre]
Maintainer: Roberto Serrano-Notivoli <roberto.serrano@unizar.es>
Diff between reddPrec versions 0.4.0 dated 2017-10-17 and 2.0.0 dated 2024-01-09
reddPrec-0.4.0/reddPrec/data |only reddPrec-0.4.0/reddPrec/inst |only reddPrec-0.4.0/reddPrec/man/cleaned.Rd |only reddPrec-0.4.0/reddPrec/man/filled.Rd |only reddPrec-0.4.0/reddPrec/man/points.Rd |only reddPrec-0.4.0/reddPrec/man/preci.Rd |only reddPrec-0.4.0/reddPrec/man/sts.Rd |only reddPrec-2.0.0/reddPrec/DESCRIPTION | 27 +- reddPrec-2.0.0/reddPrec/MD5 | 31 +- reddPrec-2.0.0/reddPrec/NAMESPACE | 31 +- reddPrec-2.0.0/reddPrec/R/fillData.R |only reddPrec-2.0.0/reddPrec/R/gapFilling.R | 251 ++++++++----------- reddPrec-2.0.0/reddPrec/R/gridPcp.R | 152 ++++------- reddPrec-2.0.0/reddPrec/R/predday.R |only reddPrec-2.0.0/reddPrec/R/predpoint.R |only reddPrec-2.0.0/reddPrec/R/qcFirst.R |only reddPrec-2.0.0/reddPrec/R/qcLast.R |only reddPrec-2.0.0/reddPrec/R/qcPrec.R | 356 ++++++++-------------------- reddPrec-2.0.0/reddPrec/R/stand_qq.R |only reddPrec-2.0.0/reddPrec/R/stand_ratio.R |only reddPrec-2.0.0/reddPrec/R/standardization.R |only reddPrec-2.0.0/reddPrec/man/gapFilling.Rd | 99 ++++--- reddPrec-2.0.0/reddPrec/man/gridPcp.Rd | 104 ++++---- reddPrec-2.0.0/reddPrec/man/qcPrec.Rd | 110 ++++---- 24 files changed, 505 insertions(+), 656 deletions(-)
Title: Parse and Manipulate Research Patient Data Registry ('RPDR')
Text Queries
Description: Functions to load Research Patient Data Registry ('RPDR') text queries from Partners Healthcare institutions into R.
The package also provides helper functions to manipulate data and execute common procedures
such as finding the closest radiological exams considering a given timepoint, or creating a DICOM header database
from the downloaded images. All functionalities are parallelized for fast and efficient analyses.
Author: Marton Kolossvary [aut, cre]
Maintainer: Marton Kolossvary <mkolossvary@mgh.harvard.edu>
Diff between parseRPDR versions 1.0.1 dated 2023-03-31 and 1.1.0 dated 2024-01-09
parseRPDR-1.0.1/parseRPDR/R/find_exam_bm.R |only parseRPDR-1.0.1/parseRPDR/man/find_exam_bm.Rd |only parseRPDR-1.1.0/parseRPDR/DESCRIPTION | 22 parseRPDR-1.1.0/parseRPDR/MD5 | 76 +- parseRPDR-1.1.0/parseRPDR/NAMESPACE | 1 parseRPDR-1.1.0/parseRPDR/NEWS.md | 15 parseRPDR-1.1.0/parseRPDR/R/ZZZ.R | 9 parseRPDR-1.1.0/parseRPDR/R/convert_dia.R | 16 parseRPDR-1.1.0/parseRPDR/R/convert_enc.R | 17 parseRPDR-1.1.0/parseRPDR/R/convert_med.R | 15 parseRPDR-1.1.0/parseRPDR/R/convert_notes.R | 16 parseRPDR-1.1.0/parseRPDR/R/convert_phy.R | 15 parseRPDR-1.1.0/parseRPDR/R/convert_prc.R | 15 parseRPDR-1.1.0/parseRPDR/R/convert_rfv.R | 17 parseRPDR-1.1.0/parseRPDR/R/dcm_db.R | 2 parseRPDR-1.1.0/parseRPDR/R/find_exam.R | 41 - parseRPDR-1.1.0/parseRPDR/R/find_exam_ram.R | 47 - parseRPDR-1.1.0/parseRPDR/R/load_all_data.R | 48 - parseRPDR-1.1.0/parseRPDR/R/load_notes.R | 2 parseRPDR-1.1.0/parseRPDR/R/parse_ids.R | 14 parseRPDR-1.1.0/parseRPDR/R/pretty_mrn.R | 41 - parseRPDR-1.1.0/parseRPDR/R/remove_column.R | 2 parseRPDR-1.1.0/parseRPDR/README.md | 293 ++++------ parseRPDR-1.1.0/parseRPDR/man/convert_notes.Rd | 2 parseRPDR-1.1.0/parseRPDR/man/create_img_db.Rd | 6 parseRPDR-1.1.0/parseRPDR/man/find_exam.Rd | 19 parseRPDR-1.1.0/parseRPDR/man/find_exam_ram.Rd | 43 - parseRPDR-1.1.0/parseRPDR/man/load_notes.Rd | 2 parseRPDR-1.1.0/parseRPDR/man/remove_column.Rd | 1 parseRPDR-1.1.0/parseRPDR/tests/covr.R | 7 parseRPDR-1.1.0/parseRPDR/tests/testthat.R | 8 parseRPDR-1.1.0/parseRPDR/tests/testthat/test-convert_dia.R | 10 parseRPDR-1.1.0/parseRPDR/tests/testthat/test-convert_enc.R | 12 parseRPDR-1.1.0/parseRPDR/tests/testthat/test-convert_med.R | 16 parseRPDR-1.1.0/parseRPDR/tests/testthat/test-convert_phy.R | 12 parseRPDR-1.1.0/parseRPDR/tests/testthat/test-convert_prc.R | 16 parseRPDR-1.1.0/parseRPDR/tests/testthat/test-convert_rfv.R | 12 parseRPDR-1.1.0/parseRPDR/tests/testthat/test-find_exam.R | 81 -- parseRPDR-1.1.0/parseRPDR/tests/testthat/test-load_all_data.R | 20 parseRPDR-1.1.0/parseRPDR/tests/testthat/test-pretty_mrn.R | 9 40 files changed, 500 insertions(+), 500 deletions(-)
Title: Landscape Metrics for Categorical Map Patterns
Description: Calculates landscape metrics for categorical landscape patterns in
a tidy workflow. 'landscapemetrics' reimplements the most common metrics from
'FRAGSTATS' (<https://www.fragstats.org/>) and new ones from the current
literature on landscape metrics. This package supports 'terra' SpatRaster objects
as input arguments. It further provides utility functions to visualize patches,
select metrics and building blocks to develop new metrics.
Author: Maximilian H.K. Hesselbarth [aut, cre]
,
Marco Sciaini [aut] ,
Jakub Nowosad [aut] ,
Sebastian Hanss [aut] ,
Laura J. Graham [ctb] ,
Jeffrey Hollister [ctb] ,
Kimberly A. With [ctb] ,
Florian Prive [ctb] function),
Project Nayuki [ctb] ,
Matt Strima [...truncated...]
Maintainer: Maximilian H.K. Hesselbarth <mhk.hesselbarth@gmail.com>
Diff between landscapemetrics versions 2.1.0 dated 2023-11-28 and 2.1.1 dated 2024-01-09
DESCRIPTION | 6 MD5 | 342 +++++++++++++++++++++---------------------- NEWS.md | 7 R/calculate_correlation.R | 3 R/calculate_lsm.R | 3 R/check_landscape.R | 3 R/construct_buffer.R | 8 - R/data_info.R | 3 R/extract_lsm.R | 3 R/get_adjacencies.R | 3 R/get_boundaries.R | 3 R/get_centroids.R | 3 R/get_circumscribingcircle.R | 5 R/get_nearestneighbour.R | 3 R/get_patches.R | 3 R/get_unique_values.R | 3 R/landscape_as_list.R | 3 R/list_lsm.R | 3 R/lsm_c_ai.R | 3 R/lsm_c_area_cv.R | 3 R/lsm_c_area_mn.R | 3 R/lsm_c_area_sd.R | 3 R/lsm_c_ca.R | 3 R/lsm_c_cai_cv.R | 3 R/lsm_c_cai_mn.R | 3 R/lsm_c_cai_sd.R | 3 R/lsm_c_circle_cv.R | 3 R/lsm_c_circle_mn.R | 3 R/lsm_c_circle_sd.R | 3 R/lsm_c_clumpy.R | 5 R/lsm_c_cohesion.R | 5 R/lsm_c_contig_cv.R | 3 R/lsm_c_contig_mn.R | 3 R/lsm_c_contig_sd.R | 3 R/lsm_c_core_cv.R | 3 R/lsm_c_core_mn.R | 3 R/lsm_c_core_sd.R | 3 R/lsm_c_cpland.R | 5 R/lsm_c_dcad.R | 3 R/lsm_c_dcore_cv.R | 3 R/lsm_c_dcore_mn.R | 3 R/lsm_c_dcore_sd.R | 3 R/lsm_c_division.R | 3 R/lsm_c_ed.R | 5 R/lsm_c_enn_cv.R | 3 R/lsm_c_enn_mn.R | 3 R/lsm_c_enn_sd.R | 3 R/lsm_c_frac_cv.R | 3 R/lsm_c_frac_mn.R | 3 R/lsm_c_frac_sd.R | 3 R/lsm_c_gyrate_cv.R | 3 R/lsm_c_gyrate_mn.R | 3 R/lsm_c_gyrate_sd.R | 5 R/lsm_c_iji.R | 5 R/lsm_c_lpi.R | 3 R/lsm_c_lsi.R | 3 R/lsm_c_mesh.R | 3 R/lsm_c_ndca.R | 3 R/lsm_c_nlsi.R | 3 R/lsm_c_np.R | 3 R/lsm_c_pafrac.R | 3 R/lsm_c_para_cv.R | 3 R/lsm_c_para_mn.R | 3 R/lsm_c_para_sd.R | 5 R/lsm_c_pd.R | 3 R/lsm_c_pladj.R | 3 R/lsm_c_pland.R | 3 R/lsm_c_shape_cv.R | 3 R/lsm_c_shape_mn.R | 3 R/lsm_c_shape_sd.R | 3 R/lsm_c_split.R | 3 R/lsm_c_tca.R | 3 R/lsm_c_te.R | 3 R/lsm_l_ai.R | 7 R/lsm_l_area_cv.R | 3 R/lsm_l_area_mn.R | 3 R/lsm_l_area_sd.R | 3 R/lsm_l_cai_cv.R | 3 R/lsm_l_cai_mn.R | 3 R/lsm_l_cai_sd.R | 3 R/lsm_l_circle_cv.R | 3 R/lsm_l_circle_mn.R | 3 R/lsm_l_circle_sd.R | 3 R/lsm_l_cohesion.R | 3 R/lsm_l_condent.R | 3 R/lsm_l_contag.R | 3 R/lsm_l_contig_cv.R | 3 R/lsm_l_contig_mn.R | 3 R/lsm_l_contig_sd.R | 3 R/lsm_l_core_cv.R | 3 R/lsm_l_core_mn.R | 3 R/lsm_l_core_sd.R | 3 R/lsm_l_dcad.R | 3 R/lsm_l_dcore_cv.R | 3 R/lsm_l_dcore_mn.R | 3 R/lsm_l_dcore_sd.R | 5 R/lsm_l_division.R | 3 R/lsm_l_ed.R | 3 R/lsm_l_enn_cv.R | 3 R/lsm_l_enn_mn.R | 3 R/lsm_l_enn_sd.R | 3 R/lsm_l_ent.R | 3 R/lsm_l_frac_cv.R | 3 R/lsm_l_frac_mn.R | 3 R/lsm_l_frac_sd.R | 3 R/lsm_l_gyrate_cv.R | 3 R/lsm_l_gyrate_mn.R | 3 R/lsm_l_gyrate_sd.R | 3 R/lsm_l_iji.R | 5 R/lsm_l_joinent.R | 5 R/lsm_l_lpi.R | 3 R/lsm_l_lsi.R | 3 R/lsm_l_mesh.R | 3 R/lsm_l_msidi.R | 3 R/lsm_l_msiei.R | 3 R/lsm_l_mutinf.R | 3 R/lsm_l_ndca.R | 3 R/lsm_l_np.R | 3 R/lsm_l_pafrac.R | 3 R/lsm_l_para_cv.R | 3 R/lsm_l_para_mn.R | 3 R/lsm_l_para_sd.R | 3 R/lsm_l_pd.R | 3 R/lsm_l_pladj.R | 3 R/lsm_l_pr.R | 3 R/lsm_l_prd.R | 3 R/lsm_l_relmutinf.R | 3 R/lsm_l_rpr.R | 3 R/lsm_l_shape_cv.R | 3 R/lsm_l_shape_mn.R | 3 R/lsm_l_shape_sd.R | 3 R/lsm_l_shdi.R | 3 R/lsm_l_shei.R | 3 R/lsm_l_sidi.R | 3 R/lsm_l_siei.R | 3 R/lsm_l_split.R | 3 R/lsm_l_ta.R | 3 R/lsm_l_tca.R | 3 R/lsm_l_te.R | 3 R/lsm_p_area.R | 3 R/lsm_p_cai.R | 3 R/lsm_p_circle.R | 3 R/lsm_p_contig.R | 3 R/lsm_p_core.R | 3 R/lsm_p_enn.R | 3 R/lsm_p_frac.R | 3 R/lsm_p_gyrate.R | 3 R/lsm_p_ncore.R | 3 R/lsm_p_para.R | 3 R/lsm_p_perim.R | 3 R/lsm_p_shape.R | 3 R/matrix_to_raster.R | 3 R/options_landscapemetrics.R | 61 +++---- R/pad_raster.R | 3 R/points_as_mat.R | 3 R/prepare_extras.R | 24 --- R/proj_info.R | 3 R/raster_to_points.R | 3 R/sample_lsm.R | 8 - R/show_cores.R | 3 R/show_correlation.R | 3 R/show_lsm.R | 3 R/show_patches.R | 3 R/spatialize_lsm.R | 4 R/unpad_raster.R | 3 R/window_lsm.R | 5 inst/doc/get_started.html | 7 man/construct_buffer.Rd | 11 + man/get_enn_patch.Rd | 1 man/get_perimeter_patch.Rd | 1 man/lsm_c_iji.Rd | 1 man/lsm_l_iji.Rd | 1 172 files changed, 247 insertions(+), 737 deletions(-)
More information about landscapemetrics at CRAN
Permanent link
Title: Text Conversion from Nexis Uni PDFs to R Data Frames
Description: Transform 'newswire' and earnings call transcripts as PDF obtained from 'Nexis Uni' to R data frames. Various 'newswires' and 'FairDisclosure' earnings call formats are supported. Further, users can apply several pre-defined dictionaries on the data based on Graffin et al. (2016)<doi:10.5465/amj.2013.0288> and Gamache et al. (2015)<doi:10.5465/amj.2013.0377>.
Author: Jonas Roettger [aut, cre]
Maintainer: Jonas Roettger <jonas.roettger@gmx.net>
Diff between disclosuR versions 0.5.2 dated 2023-11-23 and 0.6.0 dated 2024-01-09
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/2023-04-24_DisclosuR.R | 2 -- 3 files changed, 6 insertions(+), 8 deletions(-)
Title: Efficient Phylogenetics on Large Trees
Description: Efficient phylogenetic analyses on massive phylogenies comprising up to millions of tips. Functions include pruning, rerooting, calculation of most-recent common ancestors, calculating distances from the tree root and calculating pairwise distances. Calculation of phylogenetic signal and mean trait depth (trait conservatism), ancestral state reconstruction and hidden character prediction of discrete characters, simulating and fitting models of trait evolution, fitting and simulating diversification models, dating trees, comparing trees, and reading/writing trees in Newick format. Citation: Louca, Stilianos and Doebeli, Michael (2017) <doi:10.1093/bioinformatics/btx701>.
Author: Stilianos Louca
Maintainer: Stilianos Louca <louca.research@gmail.com>
Diff between castor versions 1.7.11 dated 2023-08-17 and 1.8.0 dated 2024-01-09
DESCRIPTION | 11 - MD5 | 67 ++++--- NAMESPACE | 8 R/RcppExports.R | 16 + R/asr_mk_model.R | 2 R/auxiliary_routines.R | 176 ++++++++++++++++++- R/biom.R |only R/consensus_taxonomies.R | 6 R/correlate_phylo_geodistances.R |only R/expanded_tree_from_jplace.r |only R/fit_musse.R | 2 R/geographic_acf.R | 30 +-- R/get_all_node_depths.R | 2 R/hsp_binomial.R | 3 R/hsp_empirical_probabilities.R | 9 R/hsp_max_parsimony.R | 49 +++-- R/hsp_mk_model.R | 20 +- R/hsp_nearest_neighbor.R | 2 R/map_to_state_space.R | 25 +- R/place_tips_taxonomically.R |only R/read_tree.R | 4 man/consensus_taxonomies.Rd | 8 man/correlate_phylo_geodistances.Rd |only man/expanded_tree_from_jplace.Rd |only man/fit_sbm_const.Rd | 2 man/fit_sbm_geobiased_const.Rd | 2 man/fit_sbm_linear.Rd | 2 man/fit_sbm_on_grid.Rd | 2 man/fit_sbm_parametric.Rd | 2 man/geographic_acf.Rd | 4 man/hsp_binomial.Rd | 3 man/hsp_empirical_probabilities.Rd | 3 man/hsp_max_parsimony.Rd | 3 man/hsp_mk_model.Rd | 3 man/map_to_state_space.Rd | 14 - man/place_tips_taxonomically.Rd |only src/RcppExports.cpp | 69 +++++++ src/phylogenetics_cpp_routines.cpp | 328 ++++++++++++++++++++++++++++++++---- 38 files changed, 729 insertions(+), 148 deletions(-)
Title: Treatment of Zeros, Left-Censored and Missing Values in
Compositional Data Sets
Description: Principled methods for the imputation of zeros, left-censored and missing data in
compositional data sets (Palarea-Albaladejo and Martin-Fernandez (2015) <doi:10.1016/j.chemolab.2015.02.019>).
Author: Javier Palarea-Albaladejo [cre, aut]
,
Josep Antoni Martin-Fernandez [aut]
Maintainer: Javier Palarea-Albaladejo <javier.palarea@udg.edu>
Diff between zCompositions versions 1.5 dated 2023-12-07 and 1.5.0-1 dated 2024-01-09
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- NEWS | 9 ++++++++- R/cmultRepl.R | 10 ++++++---- R/lrDA.R | 10 ++++++---- R/lrEM.R | 10 ++++++---- R/lrEMplus.R | 10 ++++++---- R/lrSVD.R | 10 ++++++---- R/lrSVDplus.R | 11 ++++++----- R/multKM.R | 10 ++++++---- R/multLN.R | 10 ++++++---- R/multRepl.R | 10 ++++++---- R/multReplus.R | 10 ++++++---- man/zCompositions-package.Rd | 2 +- 14 files changed, 86 insertions(+), 60 deletions(-)
Title: Standardize Plant Names According to World Flora Online
Taxonomic Backbone
Description: World Flora Online is an online flora of all known plants, available from <https://www.worldfloraonline.org/>. Methods are provided of matching a list of plant names (scientific names, taxonomic names, botanical names) against a static copy of the World Flora Online Taxonomic Backbone data that can be downloaded from the World Flora Online website. The World Flora Online Taxonomic Backbone is an updated version of The Plant List (<http://www.theplantlist.org/>), a working list of plant names that has become static since 2013.
Author: Roeland Kindt [cre, aut]
Maintainer: Roeland Kindt <RoelandCEKindt@gmail.com>
Diff between WorldFlora versions 1.13-2 dated 2023-05-26 and 1.14-1 dated 2024-01-09
DESCRIPTION | 10 ++--- MD5 | 16 ++++----- R/WFO.acceptable.match.R | 36 +++++++++++++++++++++ R/new.backbone.R | 74 ++++++++++++++++++++++++-------------------- inst/ChangeLog | 11 ++++++ man/WFO.acceptable.match.Rd | 32 +++++++++++++++++-- man/WFO.example.Rd | 4 +- man/WFO.match.Rd | 8 ++-- man/WFO.match2.Rd | 2 - 9 files changed, 139 insertions(+), 54 deletions(-)
Title: Functions for Tidy Analysis and Generation of Random Data
Description: To make it easy to generate random numbers based upon the underlying stats
distribution functions. All data is returned in a tidy and structured
format making working with the data simple and straight forward. Given that the
data is returned in a tidy 'tibble' it lends itself to working with the rest of the
'tidyverse'.
Author: Steven Sanderson [aut, cre, cph]
Maintainer: Steven Sanderson <spsanderson@gmail.com>
Diff between TidyDensity versions 1.2.6 dated 2023-10-30 and 1.3.0 dated 2024-01-09
DESCRIPTION | 7 MD5 | 386 +++++++------ NAMESPACE | 4 NEWS.md | 33 + R/00_global_variables.R | 24 R/augment-bootstrap-density.R | 178 +++--- R/augment-bootstrap-p.R | 142 ++--- R/augment-bootstrap-q.R | 144 ++--- R/autoplot-combined-dist.R | 560 ++++++++++---------- R/autoplot-four-graphs.R | 190 +++--- R/autoplot-multi-dist.R | 58 +- R/autoplot-randomwalk.R | 24 R/autoplot-triangular.R |only R/autoplot.R | 59 +- R/bootstrap-unnest-tbl.R | 108 +-- R/combine-multi-single-dist-tbl.R | 26 R/combine-tidy-distributions-tbl.R | 140 ++--- R/empirical-tidy-bootstrap.R | 186 +++--- R/empirical-tidy.R | 278 ++++----- R/est-param-bernoulli.R | 4 R/est-param-beta.R | 314 +++++------ R/est-param-binomial.R | 330 +++++------ R/est-param-burr.R | 4 R/est-param-cauchy.R | 192 +++--- R/est-param-exponential.R | 206 +++---- R/est-param-gamma.R | 252 ++++----- R/est-param-geometric.R | 236 ++++---- R/est-param-hypergeometric.R | 446 +++++++-------- R/est-param-logistic.R | 280 +++++----- R/est-param-lognormal.R | 226 ++++---- R/est-param-negative-binomial.R | 298 +++++----- R/est-param-normal.R | 226 ++++---- R/est-param-pareto.R | 238 ++++---- R/est-param-poisson.R | 212 +++---- R/est-param-triangular.R |only R/est-param-uniform.R | 216 +++---- R/palette-color-blind.R | 80 +- R/plot-bootstrap-stat.R | 510 +++++++++--------- R/random-tidy-bernoulli.R | 52 + R/random-tidy-beta.R | 45 + R/random-tidy-binomial.R | 43 + R/random-tidy-burr-inverse.R | 59 +- R/random-tidy-burr.R | 59 +- R/random-tidy-cauchy.R | 44 + R/random-tidy-chisquare.R | 50 + R/random-tidy-exponential-inverse.R | 44 + R/random-tidy-exponential.R | 45 + R/random-tidy-f.R | 45 + R/random-tidy-gamma-inverse.R | 54 + R/random-tidy-gamma.R | 45 + R/random-tidy-general-beta.R | 62 +- R/random-tidy-general-pareto.R | 59 +- R/random-tidy-geom.R | 45 + R/random-tidy-hypergeometric.R | 46 + R/random-tidy-logistic.R | 45 + R/random-tidy-lognormal.R | 45 + R/random-tidy-mixture.R | 2 R/random-tidy-negative-binomial.R | 45 + R/random-tidy-normal-inverse.R | 53 + R/random-tidy-normal.R | 47 + R/random-tidy-paralogistic.R | 52 + R/random-tidy-pareto-inverse.R | 45 + R/random-tidy-pareto-single-param.R | 45 + R/random-tidy-pareto.R | 44 + R/random-tidy-poisson.R | 45 + R/random-tidy-t.R | 48 + R/random-tidy-triangular.R |only R/random-tidy-uniform.R | 44 + R/random-tidy-weibull-inverse.R | 54 + R/random-tidy-weibull.R | 45 + R/random-tidy-zero-truc-poisson.R | 44 + R/random-tidy-zero-trunc-geometric.R | 45 + R/random-tidy-zero-truncated-binomial.R | 45 + R/random-zero-trunc-negative-binomial.R | 46 + R/stats-bernoulli-tbl.R | 4 R/stats-beta-tbl.R | 4 R/stats-binomial-tbl.R | 4 R/stats-burr-tbl.R | 4 R/stats-cauchy-tbl.R | 4 R/stats-chisquare-tbl.R | 4 R/stats-exponential-tbl.R | 4 R/stats-f-tbl.R | 4 R/stats-gamma-tbl.R | 4 R/stats-geometric-tbl.R | 10 R/stats-hypergeometric-tbl.R | 4 R/stats-logistic-tbl.R | 4 R/stats-lognormal-tbl.R | 4 R/stats-negative-binomial-tbl.R | 4 R/stats-normal-tbl.R | 4 R/stats-pareto-tbl.R | 4 R/stats-poisson-tbl.R | 4 R/stats-t-tbl.R | 4 R/stats-tidy-stat-func-tbl.R | 68 +- R/stats-triangular-tbl.R |only R/stats-uniform-tbl.R | 4 R/stats-weibull-tbl.R | 4 R/utils-distribution-comparison.R | 170 +++--- R/vec-cumulative-functions.R | 508 +++++++++--------- README.md | 24 build/vignette.rds |binary inst/doc/getting-started.html | 36 - man/bootstrap_density_augment.Rd | 6 man/bootstrap_p_augment.Rd | 4 man/bootstrap_q_augment.Rd | 4 man/bootstrap_stat_plot.Rd | 4 man/bootstrap_unnest_tbl.Rd | 2 man/csd.Rd | 3 man/cvar.Rd | 3 man/figures/README-more_than_nine_simulations-1.png |binary man/figures/README-more_than_nine_simulations-2.png |binary man/figures/README-more_than_nine_simulations-3.png |binary man/figures/README-more_than_nine_simulations-4.png |binary man/figures/README-plot_density-1.png |binary man/figures/README-plot_density-2.png |binary man/figures/README-plot_density-3.png |binary man/figures/README-plot_density-4.png |binary man/tidy_autoplot.Rd | 4 man/tidy_bernoulli.Rd | 5 man/tidy_beta.Rd | 14 man/tidy_binomial.Rd | 11 man/tidy_burr.Rd | 7 man/tidy_cauchy.Rd | 12 man/tidy_chisquare.Rd | 13 man/tidy_combined_autoplot.Rd | 4 man/tidy_exponential.Rd | 7 man/tidy_f.Rd | 14 man/tidy_four_autoplot.Rd | 2 man/tidy_gamma.Rd | 13 man/tidy_generalized_beta.Rd | 8 man/tidy_generalized_pareto.Rd | 8 man/tidy_geometric.Rd | 7 man/tidy_hypergeometric.Rd | 13 man/tidy_inverse_burr.Rd | 7 man/tidy_inverse_exponential.Rd | 12 man/tidy_inverse_gamma.Rd | 8 man/tidy_inverse_normal.Rd | 8 man/tidy_inverse_pareto.Rd | 13 man/tidy_inverse_weibull.Rd | 8 man/tidy_logistic.Rd | 13 man/tidy_lognormal.Rd | 13 man/tidy_mixture_density.Rd | 2 man/tidy_multi_dist_autoplot.Rd | 9 man/tidy_multi_single_dist.Rd | 3 man/tidy_negative_binomial.Rd | 12 man/tidy_normal.Rd | 7 man/tidy_paralogistic.Rd | 7 man/tidy_pareto.Rd | 13 man/tidy_pareto1.Rd | 13 man/tidy_poisson.Rd | 6 man/tidy_random_walk_autoplot.Rd | 10 man/tidy_t.Rd | 7 man/tidy_triangular.Rd |only man/tidy_uniform.Rd | 7 man/tidy_weibull.Rd | 13 man/tidy_zero_truncated_binomial.Rd | 12 man/tidy_zero_truncated_geometric.Rd | 12 man/tidy_zero_truncated_negative_binomial.Rd | 7 man/tidy_zero_truncated_poisson.Rd | 11 man/triangle_plot.Rd |only man/util_bernoulli_param_estimate.Rd | 5 man/util_bernoulli_stats_tbl.Rd | 5 man/util_beta_param_estimate.Rd | 3 man/util_beta_stats_tbl.Rd | 5 man/util_binomial_param_estimate.Rd | 3 man/util_binomial_stats_tbl.Rd | 5 man/util_burr_param_estimate.Rd | 5 man/util_burr_stats_tbl.Rd | 5 man/util_cauchy_param_estimate.Rd | 3 man/util_cauchy_stats_tbl.Rd | 5 man/util_chisquare_stats_tbl.Rd | 5 man/util_exponential_param_estimate.Rd | 5 man/util_exponential_stats_tbl.Rd | 5 man/util_f_stats_tbl.Rd | 5 man/util_gamma_param_estimate.Rd | 5 man/util_gamma_stats_tbl.Rd | 5 man/util_geometric_param_estimate.Rd | 5 man/util_geometric_stats_tbl.Rd | 5 man/util_hypergeometric_param_estimate.Rd | 3 man/util_hypergeometric_stats_tbl.Rd | 5 man/util_logistic_param_estimate.Rd | 3 man/util_logistic_stats_tbl.Rd | 5 man/util_lognormal_param_estimate.Rd | 5 man/util_lognormal_stats_tbl.Rd | 5 man/util_negative_binomial_param_estimate.Rd | 3 man/util_negative_binomial_stats_tbl.Rd | 5 man/util_normal_param_estimate.Rd | 3 man/util_normal_stats_tbl.Rd | 5 man/util_pareto_param_estimate.Rd | 5 man/util_pareto_stats_tbl.Rd | 5 man/util_poisson_param_estimate.Rd | 3 man/util_poisson_stats_tbl.Rd | 5 man/util_t_stats_tbl.Rd | 5 man/util_triangular_param_estimate.Rd |only man/util_triangular_stats_tbl.Rd |only man/util_uniform_param_estimate.Rd | 3 man/util_uniform_stats_tbl.Rd | 5 man/util_weibull_param_estimate.Rd | 1 man/util_weibull_stats_tbl.Rd | 5 198 files changed, 5422 insertions(+), 4487 deletions(-)
Title: Extract and Analyze Rivers from Elevation Data
Description: Seamless extraction of river networks from digital
elevation models data. The package allows analysis of digital
elevation models that can be either externally provided or
downloaded from open source repositories (thus interfacing
with the 'elevatr' package). Extraction is performed via the
'D8' flow direction algorithm of TauDEM (Terrain Analysis Using
Digital Elevation Models), thus interfacing with the 'traudem'
package. Resulting river networks are compatible with functions
from the 'OCNet' package. See Carraro (2023)
<doi:10.5194/hess-27-3733-2023> for a presentation of the package.
Author: Luca Carraro [cre, aut],
University of Zurich [cph, fnd]
Maintainer: Luca Carraro <luca.carraro@hotmail.it>
Diff between rivnet versions 0.3.4 dated 2023-11-24 and 0.4.0 dated 2024-01-09
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 13 +++++++++++++ R/extract_river.R | 21 +++++++++++++++------ R/points_colorscale.R | 4 ++-- build/vignette.rds |binary inst/doc/rivnet.R | 4 ++-- man/extract_river.Rd | 7 ++++--- man/plot.Rd | 29 +++++++++++++++++++---------- 9 files changed, 66 insertions(+), 34 deletions(-)
Title: Post-Hoc Interaction Analysis
Description: Analysis of terms in linear, generalized and mixed linear models,
on the basis of multiple comparisons of factor contrasts. Specially suited
for the analysis of interaction terms.
Author: Helios De Rosario-Martinez [aut, cre],
John Fox [ctb],
R Core Team [ctb],
Chalmers Phil [ctb]
Maintainer: Helios De Rosario-Martinez <helios.derosario@gmail.com>
Diff between phia versions 0.3-0 dated 2023-12-03 and 0.3-1 dated 2024-01-09
ChangeLog | 8 +++++++- DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/interactionMeans.R | 44 ++++++++++++++++++++++++++++---------------- inst/doc/phia.pdf |binary man/interactionMeans.Rd | 7 +++++-- man/phia-package.Rd | 4 ++-- 7 files changed, 52 insertions(+), 31 deletions(-)
Title: Helper Tools for Managing Data, Dates, Missing Values, and Text
Description: An assortment of helper functions for managing data (e.g.,
rotating values in matrices by a user-defined angle, switching from
row- to column-indexing), dates (e.g., intuiting year from messy date
strings), handling missing values (e.g., removing elements/rows across
multiple vectors or matrices if any have an NA), text (e.g.,
flushing reports to the console in real-time); and combining data frames
with different schema (copying, filling, or concatenating columns or
applying functions before combining).
Author: Adam B. Smith [cre, aut]
Maintainer: Adam B. Smith <adam.smith@mobot.org>
Diff between omnibus versions 1.2.8 dated 2023-12-07 and 1.2.9 dated 2024-01-09
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/renumSeq.r | 24 ++++++++++-------------- README.md | 2 +- man/renumSeq.Rd | 8 ++++---- 6 files changed, 28 insertions(+), 28 deletions(-)
Title: Log-Concave Density Estimation in Arbitrary Dimensions
Description: Software for computing a log-concave (maximum likelihood) estimator for independent and identically distributed data in any number of dimensions. For a detailed description of the method see Cule, Samworth and Stewart (2010, Journal of Royal Statistical Society Series B, <doi:10.1111/j.1467-9868.2010.00753.x>).
Author: Madeleine Cule [aut],
Robert Gramacy [aut],
Richard Samworth [aut],
Yining Chen [aut, cre],
Lutz Duembgen [ctb] ,
Vikneswaran Gopal [ctb] ,
George Casella [ctb] ,
C. Bradford Barber [cph] ,
The Geometry Center [cph],
Kai Habel [cph] ,
Raoul Grasman [ [...truncated...]
Maintainer: Yining Chen <y.chen101@lse.ac.uk>
Diff between LogConcDEAD versions 1.6-8 dated 2023-04-05 and 1.6-9 dated 2024-01-09
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 4 +++- build/vignette.rds |binary inst/doc/LogConcDEAD.pdf |binary src/poly2.c | 4 ++-- src/solvoptweights.c | 2 +- 7 files changed, 16 insertions(+), 14 deletions(-)
Title: Fixed Rank Kriging
Description: A tool for spatial/spatio-temporal modelling and prediction with large datasets. The approach models the field, and hence the covariance function, using a set of basis functions. This fixed-rank basis-function representation facilitates the modelling of big data, and the method naturally allows for non-stationary, anisotropic covariance functions. Discretisation of the spatial domain into so-called basic areal units (BAUs) facilitates the use of observations with varying support (i.e., both point-referenced and areal supports, potentially simultaneously), and prediction over arbitrary user-specified regions. `FRK` also supports inference over various manifolds, including the 2D plane and 3D sphere, and it provides helper functions to model, fit, predict, and plot with relative ease. Version 2.0.0 and above also supports the modelling of non-Gaussian data (e.g., Poisson, binomial, negative-binomial, gamma, and inverse-Gaussian) by employing a generalised linear mixed model (GLMM) framew [...truncated...]
Author: Andrew Zammit-Mangion [aut, cre],
Matthew Sainsbury-Dale [aut]
Maintainer: Andrew Zammit-Mangion <andrewzm@gmail.com>
Diff between FRK versions 2.2.0 dated 2023-10-18 and 2.2.1 dated 2024-01-09
DESCRIPTION | 12 +-- MD5 | 48 ++++++------ R/AllClass.R | 14 +++ R/AllGeneric.R | 4 - R/FRK_wrapper.R | 3 R/SRE.R | 156 ++++++++++++++++++++++++++---------------- R/SREfit.R | 74 ++++++++++++++----- R/SREpredict.R | 127 ++++++++++++++++++++++++++-------- R/SREutils.R | 90 +++++++++++++++++++----- R/check_args.R | 21 ++++- R/geometryfns.R | 54 +++++++++++--- R/misc.R | 27 ++++++- build/vignette.rds |binary data/AIRS_05_2003.rda |binary data/Am_data.rda |binary data/MODIS_cloud_df.rda |binary data/NOAA_df_1990.rda |binary data/isea3h.rda |binary data/worldmap.rda |binary inst/doc/FRK_intro.pdf |binary inst/doc/FRK_non-Gaussian.pdf |binary man/SRE-class.Rd | 14 +++ man/SRE.Rd | 124 +++++++++++++++++++-------------- man/coef_uncertainty.Rd | 11 ++ src/FRK.cpp | 86 +++++++++++++---------- 25 files changed, 595 insertions(+), 270 deletions(-)
Title: Data Management and Analysis of Tests
Description: A system for the management, assessment, and psychometric analysis of data from educational and psychological tests.
Author: Gunter Maris [aut],
Timo Bechger [aut],
Jesse Koops [aut, cre],
Ivailo Partchev [aut]
Maintainer: Jesse Koops <jesse.koops@cito.nl>
Diff between dexter versions 1.2.2 dated 2022-11-08 and 1.3.3 dated 2024-01-09
dexter-1.2.2/dexter/R/anon_plausible_values.R |only dexter-1.2.2/dexter/src/roger.cpp |only dexter-1.3.3/dexter/DESCRIPTION | 16 dexter-1.3.3/dexter/MD5 | 187 ++--- dexter-1.3.3/dexter/NAMESPACE | 8 dexter-1.3.3/dexter/NEWS.md | 18 dexter-1.3.3/dexter/R/RcppExports.R | 80 +- dexter-1.3.3/dexter/R/ability.R | 34 dexter-1.3.3/dexter/R/anon.R | 22 dexter-1.3.3/dexter/R/anon_calibration.R | 42 - dexter-1.3.3/dexter/R/data_selection.R | 2 dexter-1.3.3/dexter/R/dexter.R | 87 +- dexter-1.3.3/dexter/R/dif.R | 71 - dexter-1.3.3/dexter/R/enorm.R | 220 ------ dexter-1.3.3/dexter/R/equating.R | 155 ++-- dexter-1.3.3/dexter/R/individual_differences.R | 6 dexter-1.3.3/dexter/R/interaction_model.R | 19 dexter-1.3.3/dexter/R/latent_cor.R |only dexter-1.3.3/dexter/R/misc.R | 140 +-- dexter-1.3.3/dexter/R/oplike.R | 10 dexter-1.3.3/dexter/R/plausible_scores.R | 221 ++---- dexter-1.3.3/dexter/R/plausible_values.R | 319 ++++++-- dexter-1.3.3/dexter/R/plots.R | 53 - dexter-1.3.3/dexter/R/profile_analysis.R | 8 dexter-1.3.3/dexter/R/reparam.R | 49 - dexter-1.3.3/dexter/R/resp_data.R | 60 + dexter-1.3.3/dexter/R/standards.R | 11 dexter-1.3.3/dexter/R/suf_stats.R | 1 dexter-1.3.3/dexter/R/tia.R | 45 - dexter-1.3.3/dexter/build/vignette.rds |binary dexter-1.3.3/dexter/inst/doc/DIF_vignette.R | 10 dexter-1.3.3/dexter/inst/doc/DIF_vignette.Rmd | 10 dexter-1.3.3/dexter/inst/doc/DIF_vignette.html | 159 ++-- dexter-1.3.3/dexter/inst/doc/Equating.R | 29 dexter-1.3.3/dexter/inst/doc/Equating.Rmd | 27 dexter-1.3.3/dexter/inst/doc/Equating.html | 221 +++--- dexter-1.3.3/dexter/inst/doc/Plausible_Values.R | 86 +- dexter-1.3.3/dexter/inst/doc/Plausible_Values.Rmd | 100 +- dexter-1.3.3/dexter/inst/doc/Plausible_Values.html | 326 ++++----- dexter-1.3.3/dexter/inst/doc/Test_Individual_differences.R | 15 dexter-1.3.3/dexter/inst/doc/Test_Individual_differences.Rmd | 7 dexter-1.3.3/dexter/inst/doc/Test_Individual_differences.html | 183 ++--- dexter-1.3.3/dexter/inst/doc/dexter.R | 31 dexter-1.3.3/dexter/inst/doc/dexter.Rmd | 9 dexter-1.3.3/dexter/inst/doc/dexter.html | 286 +++---- dexter-1.3.3/dexter/inst/doc/profile-plots.R | 25 dexter-1.3.3/dexter/inst/doc/profile-plots.Rmd | 23 dexter-1.3.3/dexter/inst/doc/profile-plots.html | 49 - dexter-1.3.3/dexter/man/DIF.Rd | 5 dexter-1.3.3/dexter/man/ability.Rd | 22 dexter-1.3.3/dexter/man/add_booklet.Rd | 4 dexter-1.3.3/dexter/man/coef.prms.Rd | 4 dexter-1.3.3/dexter/man/dexter-package.Rd | 10 dexter-1.3.3/dexter/man/fit_domains.Rd | 3 dexter-1.3.3/dexter/man/fit_enorm.Rd | 4 dexter-1.3.3/dexter/man/fit_inter.Rd | 4 dexter-1.3.3/dexter/man/get_resp_data.Rd | 2 dexter-1.3.3/dexter/man/get_testscores.Rd | 2 dexter-1.3.3/dexter/man/individual_differences.Rd | 4 dexter-1.3.3/dexter/man/information.Rd | 4 dexter-1.3.3/dexter/man/latent_cor.Rd | 6 dexter-1.3.3/dexter/man/plausible_scores.Rd | 21 dexter-1.3.3/dexter/man/plausible_values.Rd | 29 dexter-1.3.3/dexter/man/plot.prms.Rd | 9 dexter-1.3.3/dexter/man/probability_to_pass.Rd | 5 dexter-1.3.3/dexter/man/profile_plot.Rd | 8 dexter-1.3.3/dexter/man/standards_3dc.Rd | 9 dexter-1.3.3/dexter/man/verbAggrData.Rd | 2 dexter-1.3.3/dexter/src/Makevars | 12 dexter-1.3.3/dexter/src/Makevars.win | 13 dexter-1.3.3/dexter/src/RcppExports.cpp | 358 +++++----- dexter-1.3.3/dexter/src/ability.cpp |only dexter-1.3.3/dexter/src/ability.h |only dexter-1.3.3/dexter/src/data.cpp | 18 dexter-1.3.3/dexter/src/elsym.cpp | 319 +++----- dexter-1.3.3/dexter/src/myomp.h |only dexter-1.3.3/dexter/src/priors.cpp |only dexter-1.3.3/dexter/src/priors.h |only dexter-1.3.3/dexter/src/progress.h | 53 + dexter-1.3.3/dexter/src/pv.cpp |only dexter-1.3.3/dexter/src/shared.h |only dexter-1.3.3/dexter/src/simulation.cpp |only dexter-1.3.3/dexter/tests/testthat.R | 5 dexter-1.3.3/dexter/tests/testthat/test_ability.R | 41 - dexter-1.3.3/dexter/tests/testthat/test_data_selection.R | 10 dexter-1.3.3/dexter/tests/testthat/test_database.R | 45 - dexter-1.3.3/dexter/tests/testthat/test_enorm.R | 6 dexter-1.3.3/dexter/tests/testthat/test_interaction.R | 7 dexter-1.3.3/dexter/tests/testthat/test_latent_cor.R | 9 dexter-1.3.3/dexter/tests/testthat/test_p2p.R | 9 dexter-1.3.3/dexter/tests/testthat/test_plausible_scores.R | 17 dexter-1.3.3/dexter/tests/testthat/test_plausible_values.R | 6 dexter-1.3.3/dexter/tests/testthat/test_profiles.R | 3 dexter-1.3.3/dexter/tests/testthat/test_tia.R | 5 dexter-1.3.3/dexter/vignettes/DIF_vignette.Rmd | 10 dexter-1.3.3/dexter/vignettes/Equating.Rmd | 27 dexter-1.3.3/dexter/vignettes/Plausible_Values.Rmd | 100 +- dexter-1.3.3/dexter/vignettes/Test_Individual_differences.Rmd | 7 dexter-1.3.3/dexter/vignettes/dexter.Rmd | 9 dexter-1.3.3/dexter/vignettes/profile-plots.Rmd | 23 100 files changed, 2539 insertions(+), 2210 deletions(-)
Title: General Bivariate Copula Theory and Many Utility Functions
Description: Extensive functions for bivariate copula (bicopula) computations and related operations
for bicopula theory. The lower, upper, product, and select other bicopula are implemented along
with operations including the diagonal, survival copula, dual of a copula, co-copula, and
numerical bicopula density. Level sets, horizontal and vertical sections are supported. Numerical
derivatives and inverses of a bicopula are provided through which simulation is implemented.
Bicopula composition, convex combination, asymmetry extension, and products also are provided.
Support extends to the Kendall Function as well as the Lmoments thereof. Kendall Tau,
Spearman Rho and Footrule, Gini Gamma, Blomqvist Beta, Hoeffding Phi, Schweizer-
Wolff Sigma, tail dependency, tail order, skewness, and bivariate Lmoments are implemented, and
positive/negative quadrant dependency, left (right) increasing (decreasing) are available.
Other features include Kullback-Leibler Divergence, Vuong Procedure, spectral measure, [...truncated...]
Author: William Asquith
Maintainer: William Asquith <william.asquith@ttu.edu>
Diff between copBasic versions 2.2.2 dated 2023-10-17 and 2.2.3 dated 2024-01-09
DESCRIPTION | 8 +- MD5 | 156 ++++++++++++++++++++++++++---------------------- NAMESPACE | 15 ++++ NEWS | 57 +++++++++++++++++ R/AMHcop.R | 29 ++++++-- R/CIRCcop.R |only R/COP.R | 7 +- R/COPinv.R | 8 +- R/COPinv2.R | 8 +- R/EuvCOP.R |only R/EvuCOP.R |only R/M_N5p12b.R |only R/ORDSUMcop.R |only R/ORDSUWcop.R |only R/PLACKETTcop.R | 7 +- R/W_N5p12a.R |only R/bicoploc.R |only R/breveCOP.R | 2 R/diagCOPatf.R | 16 ++-- R/kfuncCOP.R | 12 ++- R/kfuncCOPinv.R | 7 +- R/level.curvesCOP.R | 17 +++-- R/level.curvesCOP2.R | 23 ++++++- R/prod2COP.R | 5 - R/sectionCOP.R | 2 R/simCOP.R | 121 +++++++++++++++++++++++++++++++++++-- build/partial.rdb |binary inst/OtherTest.R |only inst/empcop_Evu.R |only man/AMHcop.Rd | 43 ++++++++----- man/CIRCcop.Rd |only man/COP.Rd | 2 man/COPinv.Rd | 17 ++--- man/COPinv2.Rd | 17 ++--- man/EMPIRsim.Rd | 2 man/EuvCOP.Rd |only man/EvuCOP.Rd |only man/HRcop.Rd | 4 - man/JOcopB5.Rd | 2 man/M_N5p12b.Rd |only man/ORDSUMcop.Rd |only man/ORDSUWcop.Rd |only man/PARETOcop.Rd | 4 - man/RFcop.Rd | 18 +++-- man/W.Rd | 6 - man/W_N5p12a.Rd |only man/aicCOP.Rd | 4 - man/asCOP.Rd | 1 man/bicCOP.Rd | 4 - man/bicoploc.Rd |only man/bilmoms.Rd | 7 +- man/blomCOPss.Rd | 4 - man/composite1COP.Rd | 6 - man/convex2COP.Rd | 2 man/copBasic-package.Rd | 27 ++++++-- man/densityCOP.Rd | 4 - man/densityCOPplot.Rd | 2 man/derCOP.Rd | 2 man/derCOP2.Rd | 2 man/derCOPinv.Rd | 10 +-- man/derCOPinv2.Rd | 2 man/diagCOP.Rd | 1 man/diagCOPatf.Rd | 15 +++- man/footCOP.Rd | 2 man/giniCOP.Rd | 2 man/glueCOP.Rd | 2 man/hoefCOP.Rd | 2 man/isCOP.LTD.Rd | 2 man/isCOP.RTI.Rd | 4 - man/isCOP.permsym.Rd | 2 man/isCOP.radsym.Rd | 2 man/joint.curvesCOP.Rd | 2 man/jointCOP.Rd | 2 man/kfuncCOP.Rd | 17 +++-- man/kfuncCOPinv.Rd | 12 ++- man/kfuncCOPlmoms.Rd | 80 +++++++++++++++--------- man/kullCOP.Rd | 22 +++--- man/level.curvesCOP.Rd | 7 +- man/level.curvesCOP2.Rd | 7 +- man/prod2COP.Rd | 34 +++++++--- man/rhobevCOP.Rd | 6 - man/semicorCOP.Rd | 8 +- man/simCOP.Rd | 24 +++++-- man/simCOPmicro.Rd | 16 ++-- man/stabtaildepf.Rd | 4 - man/tEVcop.Rd | 2 man/tauCOP.Rd | 2 man/vuongCOP.Rd | 4 - 88 files changed, 665 insertions(+), 310 deletions(-)
Title: Evaluate Function Calls on HPC Schedulers (LSF, SGE, SLURM,
PBS/Torque)
Description: Evaluate arbitrary function calls using workers on HPC schedulers
in single line of code. All processing is done on the network without
accessing the file system. Remote schedulers are supported via SSH.
Author: Michael Schubert [aut, cre, cph]
,
ZeroMQ authors [aut, cph]
Maintainer: Michael Schubert <mschu.dev@gmail.com>
Diff between clustermq versions 0.9.2 dated 2023-12-07 and 0.9.3 dated 2024-01-09
clustermq-0.9.2/clustermq/inst/doc/quickstart.R |only clustermq-0.9.2/clustermq/inst/doc/quickstart.Rmd |only clustermq-0.9.2/clustermq/inst/doc/quickstart.html |only clustermq-0.9.2/clustermq/src/patch_libzmq.sh |only clustermq-0.9.2/clustermq/vignettes/quickstart.Rmd |only clustermq-0.9.3/clustermq/DESCRIPTION | 12 clustermq-0.9.3/clustermq/MD5 | 87 - clustermq-0.9.3/clustermq/NEWS.md | 12 clustermq-0.9.3/clustermq/R/foreach.r | 12 clustermq-0.9.3/clustermq/R/master.r | 2 clustermq-0.9.3/clustermq/R/pool.r | 46 clustermq-0.9.3/clustermq/R/qsys.r | 16 clustermq-0.9.3/clustermq/R/qsys_local.r | 5 clustermq-0.9.3/clustermq/R/qsys_lsf.r | 17 clustermq-0.9.3/clustermq/R/qsys_multicore.r | 12 clustermq-0.9.3/clustermq/R/qsys_multiprocess.r | 6 clustermq-0.9.3/clustermq/R/qsys_sge.r | 24 clustermq-0.9.3/clustermq/R/qsys_slurm.r | 17 clustermq-0.9.3/clustermq/R/qsys_ssh.r | 17 clustermq-0.9.3/clustermq/README.md |only clustermq-0.9.3/clustermq/build/vignette.rds |binary clustermq-0.9.3/clustermq/configure | 25 clustermq-0.9.3/clustermq/inst/SGE.tmpl | 2 clustermq-0.9.3/clustermq/inst/SSH.tmpl | 10 clustermq-0.9.3/clustermq/inst/doc/faq.R |only clustermq-0.9.3/clustermq/inst/doc/faq.Rmd |only clustermq-0.9.3/clustermq/inst/doc/faq.html |only clustermq-0.9.3/clustermq/inst/doc/technicaldocs.R | 5 clustermq-0.9.3/clustermq/inst/doc/technicaldocs.Rmd | 9 clustermq-0.9.3/clustermq/inst/doc/technicaldocs.html | 23 clustermq-0.9.3/clustermq/inst/doc/userguide.R | 40 clustermq-0.9.3/clustermq/inst/doc/userguide.Rmd | 353 ++---- clustermq-0.9.3/clustermq/inst/doc/userguide.html | 663 +++++------- clustermq-0.9.3/clustermq/man/Pool.Rd | 1 clustermq-0.9.3/clustermq/src/CMQMaster.cpp | 3 clustermq-0.9.3/clustermq/src/CMQMaster.h | 212 ++- clustermq-0.9.3/clustermq/src/CMQProxy.cpp | 1 clustermq-0.9.3/clustermq/src/CMQProxy.h | 8 clustermq-0.9.3/clustermq/src/CMQWorker.h | 22 clustermq-0.9.3/clustermq/src/common.cpp | 13 clustermq-0.9.3/clustermq/src/common.h | 8 clustermq-0.9.3/clustermq/src/util |only clustermq-0.9.3/clustermq/tests/testthat/test-4-pool.r | 28 clustermq-0.9.3/clustermq/tests/testthat/test-5-queue.r | 25 clustermq-0.9.3/clustermq/tests/testthat/test-7-ssh_proxy.r | 17 clustermq-0.9.3/clustermq/tests/testthat/test-8-foreach.r | 24 clustermq-0.9.3/clustermq/vignettes/faq.Rmd |only clustermq-0.9.3/clustermq/vignettes/technicaldocs.Rmd | 9 clustermq-0.9.3/clustermq/vignettes/userguide.Rmd | 353 ++---- 49 files changed, 942 insertions(+), 1197 deletions(-)
Title: Generate and Plot Voronoi or Sunburst Treemaps from Hierarchical
Data
Description: Treemaps are a visually appealing graphical representation of
numerical data using a space-filling approach. A plane or 'map' is
subdivided into smaller areas called cells. The cells in the map are
scaled according to an underlying metric which allows to grasp the
hierarchical organization and relative importance of many objects at
once. This package contains two different implementations of treemaps,
Voronoi treemaps and Sunburst treemaps. The Voronoi treemap function
subdivides the plot area in polygonal cells according to the highest
hierarchical level, then continues to subdivide those parental cells
on the next lower hierarchical level, and so on. The Sunburst treemap
is a computationally less demanding treemap that does not require
iterative refinement, but simply generates circle sectors that are
sized according to predefined weights. The Voronoi tesselation is
based on functions from Paul Murrell (2012)
<https://www.stat.auckland.ac.nz/~paul/Reports/VoronoiTreemap/voronoi [...truncated...]
Author: Michael Jahn [aut, cre] ,
David Leslie [aut],
Ahmadou Dicko [aut] ,
Paul Murrell [aut, cph]
Maintainer: Michael Jahn <jahn@mpusp.mpg.de>
Diff between WeightedTreemaps versions 0.1.1 dated 2023-12-13 and 0.1.2 dated 2024-01-09
DESCRIPTION | 6 - MD5 | 22 ++--- NEWS.md | 4 - R/drawTreemap.R | 55 +++++++------ R/voronoiTreemap.R | 51 ++++++------ README.md | 37 ++++++--- inst/doc/WeightedTreemaps.R | 164 ++++++++++++++++++++--------------------- inst/doc/WeightedTreemaps.Rmd | 22 +++-- inst/doc/WeightedTreemaps.html | 17 ++-- man/drawTreemap.Rd | 55 +++++++------ man/voronoiTreemap.Rd | 51 ++++++------ vignettes/WeightedTreemaps.Rmd | 22 +++-- 12 files changed, 269 insertions(+), 237 deletions(-)
More information about WeightedTreemaps at CRAN
Permanent link
Title: Models for Data from Unmarked Animals
Description: Fits hierarchical models of animal abundance and occurrence to data collected using survey methods such as point counts, site occupancy sampling, distance sampling, removal sampling, and double observer sampling. Parameters governing the state and observation processes can be modeled as functions of covariates. References: Kellner et al. (2023) <doi:10.1111/2041-210X.14123>, Fiske and Chandler (2011) <doi:10.18637/jss.v043.i10>.
Author: Richard Chandler [aut],
Ken Kellner [cre, aut],
Ian Fiske [aut],
David Miller [aut],
Andy Royle [aut],
Jeff Hostetler [aut],
Rebecca Hutchinson [aut],
Adam Smith [aut],
Lea Pautrel [aut],
Marc Kery [ctb],
Mike Meredith [ctb],
Auriel Fournier [ctb],
A [...truncated...]
Maintainer: Ken Kellner <contact@kenkellner.com>
Diff between unmarked versions 1.3.2 dated 2023-07-08 and 1.4.1 dated 2024-01-09
DESCRIPTION | 21 +++-- MD5 | 119 ++++++++++++++++++--------------- NAMESPACE | 11 +-- NEWS.md | 13 +++ R/RcppExports.R | 4 + R/boot.R | 5 - R/gdistsamp.R | 39 +++++++--- R/gmultmix.R | 25 ++++-- R/goccu.R |only R/gpcount.R | 21 +++-- R/occuCOP.R |only R/power.R | 8 +- R/ranef.R | 15 +++- R/unmarkedCrossVal.R | 4 - R/unmarkedEstimate.R | 2 R/unmarkedFit.R | 32 +++++++- R/unmarkedFrame.R | 28 ++++++- R/utils.R | 18 ++++ build/partial.rdb |only build/vignette.rds |binary inst/doc/cap-recap.R | 8 +- inst/doc/colext.R | 2 inst/doc/contributing_to_unmarked.R |only inst/doc/contributing_to_unmarked.Rmd |only inst/doc/contributing_to_unmarked.html |only inst/doc/distsamp.R | 6 - inst/doc/distsamp.html | 4 - inst/doc/occuMulti.R | 12 +-- inst/doc/occuMulti.html | 54 +++++++------- inst/doc/simulate.R | 4 - inst/doc/spp-dist.R | 12 +-- inst/doc/spp-dist.html | 108 +++++++++++++---------------- inst/doc/unmarked.R | 8 +- man/MesoCarnivores.Rd | 14 +-- man/fitted-methods.Rd | 2 man/gdistsamp.Rd | 6 - man/getP-methods.Rd | 14 ++- man/gmultmix.Rd | 26 +++---- man/goccu.Rd |only man/gpcount.Rd | 11 +-- man/nonparboot-methods.Rd | 1 man/occuCOP.Rd |only man/occuFP.Rd | 2 man/ranef-methods.Rd | 2 man/simulate-methods.Rd | 2 man/unmarked-package.Rd | 2 man/unmarkedFit-class.Rd | 3 man/unmarkedFrame-class.Rd | 11 ++- man/unmarkedFrameOccuCOP.Rd |only man/unmarkedMultFrame.Rd | 3 src/RcppExports.cpp | 18 ++++ src/TMB/tmb_goccu.hpp |only src/TMB/tmb_occu.hpp | 5 + src/TMB/unmarked_TMBExports.cpp | 3 src/nll_occuCOP.cpp |only tests/testthat/test_distsampOpen.R | 2 tests/testthat/test_gdistsamp.R | 84 +++++++++++++++++++++-- tests/testthat/test_gmultmix.R | 40 +++++++++++ tests/testthat/test_goccu.R |only tests/testthat/test_gpcount.R | 47 +++++++++++++ tests/testthat/test_occu.R | 41 ++++++++++- tests/testthat/test_occuCOP.R |only tests/testthat/test_parboot.R | 22 ++++++ tests/testthat/test_predict.R | 10 +- tests/testthat/test_unmarkedFrame.R | 15 ++++ vignettes/contributing_to_unmarked.Rmd |only vignettes/figures/COP-model.png |only vignettes/unmarked.bib | 15 ++++ 68 files changed, 696 insertions(+), 288 deletions(-)
Title: Spatial Statistical Modeling and Prediction
Description: Fit, summarize, and predict for a variety of spatial statistical models applied to point-referenced and areal (lattice) data. Parameters are estimated using various methods. Additional modeling features include anisotropy, non-spatial random effects, partition factors, big data approaches, and more. Model-fit statistics are used to summarize, visualize, and compare models. Predictions at unobserved locations are readily obtainable. For additional details, see Dumelle et al. (2023) <doi:10.1371/journal.pone.0282524>.
Author: Michael Dumelle [aut, cre] ,
Matt Higham [aut],
Jay M. Ver Hoef [aut]
Maintainer: Michael Dumelle <Dumelle.Michael@epa.gov>
Diff between spmodel versions 0.5.0 dated 2023-10-25 and 0.5.1 dated 2024-01-09
DESCRIPTION | 6 MD5 | 54 - NAMESPACE | 1 NEWS.md | 18 R/augment.R | 534 +++++----- R/cov_estimate_sv.R | 98 - R/data.R | 300 +++--- R/dispersion_initial.R | 178 +-- R/dispersion_params.R | 116 +- R/get_fitted_glm.R | 1 R/get_local_list.R | 2 R/get_loocv.R | 89 - R/glance.R | 116 +- R/loocv.R | 228 +++- R/loocv_glm.R | 126 ++ R/partition_matrix.R | 52 - R/plot.R | 664 ++++++------- R/predict.R | 2123 ++++++++++++++++++++++--------------------- R/predict_glm.R | 190 ++- R/spautor.R | 536 +++++----- R/spcov_initial.R | 392 +++---- R/spgautor.R | 3 R/spglm.R | 3 R/splm.R | 786 +++++++-------- R/spmodel-package.R | 2 R/utils.R | 70 - man/loocv.Rd | 21 tests/testthat/test-extras.R | 55 - 28 files changed, 3615 insertions(+), 3149 deletions(-)
Title: Species-Habitat Associations
Description: Analyse species-habitat associations in R. Therefore, information about the location
of the species (as a point pattern) is needed together with environmental conditions
(as a categorical raster). To test for significance habitat associations, one of
the two components is randomized. Methods are mainly based on Plotkin et al. (2000)
<doi:10.1006/jtbi.2000.2158> and Harms et al. (2001) <doi:10.1111/j.1365-2745.2001.00615.x>.
Author: Maximilian H.K. Hesselbarth [aut, cre]
,
Marco Sciaini [aut] ,
Chris Wudel [aut] ,
Zeke Marshall [ctb] ,
Thomas Etherington [ctb] ,
Janosch Heinermann [ctb]
Maintainer: Maximilian H.K. Hesselbarth <mhk.hesselbarth@gmail.com>
Diff between shar versions 2.2 dated 2023-12-21 and 2.2.1 dated 2024-01-09
shar-2.2.1/shar/DESCRIPTION | 6 shar-2.2.1/shar/MD5 | 76 ++++----- shar-2.2.1/shar/NEWS.md | 4 shar-2.2.1/shar/R/calc_gest.R | 3 shar-2.2.1/shar/R/calc_moments.R | 3 shar-2.2.1/shar/R/calculate_energy.R | 3 shar-2.2.1/shar/R/classify_habitats.R | 163 ++++++++++---------- shar-2.2.1/shar/R/classint_to_vector.R | 99 ++++++------ shar-2.2.1/shar/R/compute_statistics.R | 3 shar-2.2.1/shar/R/create_neighbourhood.R | 129 ++++++++-------- shar-2.2.1/shar/R/dummy_transf.R | 3 shar-2.2.1/shar/R/energy_fun.R | 3 shar-2.2.1/shar/R/extract_points.R | 79 ++++------ shar-2.2.1/shar/R/fit_point_process.R | 3 shar-2.2.1/shar/R/get_dist_pairs.R | 3 shar-2.2.1/shar/R/list_to_randomized.R | 173 ++++++++++------------ shar-2.2.1/shar/R/pack_randomized.R | 3 shar-2.2.1/shar/R/plot.rd_mar.R | 4 shar-2.2.1/shar/R/plot.rd_multi.R | 3 shar-2.2.1/shar/R/plot.rd_pat.R | 3 shar-2.2.1/shar/R/plot.rd_ras.R | 3 shar-2.2.1/shar/R/plot_energy.R | 149 +++++++++---------- shar-2.2.1/shar/R/print.rd_mar.R | 3 shar-2.2.1/shar/R/print.rd_pat.R | 187 +++++++++++------------- shar-2.2.1/shar/R/print.rd_ras.R | 3 shar-2.2.1/shar/R/randomize_raster.R | 3 shar-2.2.1/shar/R/reconstruct_algorithm.R | 3 shar-2.2.1/shar/R/reconstruct_pattern.R | 3 shar-2.2.1/shar/R/reconstruct_pattern_marks.R | 3 shar-2.2.1/shar/R/reconstruct_pattern_multi.R | 3 shar-2.2.1/shar/R/results_habitat_association.R | 3 shar-2.2.1/shar/R/sample_randomized.R | 3 shar-2.2.1/shar/R/select_kernel.R | 3 shar-2.2.1/shar/R/translate_raster.R | 3 shar-2.2.1/shar/R/unpack_randomized.R | 3 shar-2.2.1/shar/inst/doc/get_started.html | 4 shar-2.2.1/shar/man/energy_fun.Rd | 1 shar-2.2.1/shar/man/plot.rd_mar.Rd | 1 shar-2.2.1/shar/man/to_dummy.Rd |only shar-2.2/shar/man/dummy_transf.Rd |only 40 files changed, 526 insertions(+), 621 deletions(-)
Title: Triangle - A 2D Quality Mesh Generator and Delaunay Triangulator
Description: This is a port of Jonathan Shewchuk's Triangle library to
R. From his description: "Triangle generates exact Delaunay
triangulations, constrained Delaunay triangulations, conforming
Delaunay triangulations, Voronoi diagrams, and high-quality
triangular meshes. The latter can be generated with no small or
large angles, and are thus suitable for finite element analysis."
Author: Jonathan Richard Shewchuk [ctb, cph],
David C. Sterratt [cph, aut, cre],
Elias Pipping [ctb],
Michael Sumner [ctb]
Maintainer: David C. Sterratt <david.c.sterratt@ed.ac.uk>
Diff between RTriangle versions 1.6-0.12 dated 2023-01-15 and 1.6-0.13 dated 2024-01-09
DESCRIPTION | 10 +++---- MD5 | 16 +++++------ NEWS | 22 ++++++++++++++- R/triangle-package.R | 4 +- R/triangle.R | 67 +++++++++++++++++++---------------------------- inst/CITATION | 10 +++---- man/RTriangle-package.Rd | 2 - man/triangulate.Rd | 15 ++++++++-- src/triangle.c | 41 ++++++++++++++-------------- 9 files changed, 103 insertions(+), 84 deletions(-)
Title: Interface to 'NetCDF' Datasets
Description: An interface to the 'NetCDF' file formats designed by Unidata
for efficient storage of array-oriented scientific data and descriptions.
Most capabilities of 'NetCDF' version 4 are supported. Optional conversions
of time units are enabled by 'UDUNITS' version 2, also from Unidata.
Author: Pavel Michna [aut],
Milton Woods [aut, cre]
Maintainer: Milton Woods <miltonjwoods@gmail.com>
Diff between RNetCDF versions 2.8-1 dated 2023-10-23 and 2.9-1 dated 2024-01-09
DESCRIPTION | 8 - INSTALL | 4 MD5 | 40 ++--- NEWS | 4 configure | 36 +++-- configure.ac | 6 src/RNetCDF.h | 2 src/attribute.c | 2 src/common.c | 4 src/common.h | 2 src/convert.c | 342 +++++++++++++++++++++++++-------------------------- src/convert.h | 2 src/dataset.c | 2 src/dimension.c | 2 src/group.c | 2 src/init.c | 2 src/type.c | 2 src/udunits.c | 8 - src/variable.c | 4 tests/RNetCDF-test.R | 13 + tools/convert.m4 | 10 - 21 files changed, 263 insertions(+), 234 deletions(-)
Title: Some Useful Functions for Statistics and Visualization
Description: Offers a range of utilities and functions for everyday programming tasks.
1.Data Manipulation. Such as grouping and merging, column splitting, and character expansion.
2.File Handling. Read and convert files in popular formats, including "blast", "diamond", "fasta", "gff", "gtf", and various image formats like "jpg", "png", "pdf", and "svg".
3.Plotting Assistance. Helpful utilities for generating color palettes, validating color formats, and adding transparency.
4.Statistical Analysis. Includes functions for pairwise comparisons and multiple testing corrections,
enabling perform statistical analyses with ease.
5.Graph Plotting, Provides efficient tools for creating doughnut plot and multi-layered doughnut plot;
Venn diagrams, including traditional Venn diagrams, upset plots, and flower plots;
Simplified functions for creating stacked bar plots, or a box plot with alphabets group for multiple comparison group.
Author: Chen Peng [aut, cre]
Maintainer: Chen Peng <pengchen2001@zju.edu.cn>
Diff between pcutils versions 0.2.0 dated 2024-01-09 and 0.2.1 dated 2024-01-09
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/plots.R | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Preparation, Checking and Post-Processing Data for PK/PD
Modeling
Description: Efficient tools for preparation, checking and post-processing of data in PK/PD (pharmacokinetics/pharmacodynamics) modeling, with focus on use of Nonmem. Attention is paid to ensure consistency, traceability, and Nonmem compatibility of Data. Rigorously checks final Nonmem datasets. Implemented in 'data.table', but easily integrated with 'base' and 'tidyverse'.
Author: Philip Delff [aut, cre]
Maintainer: Philip Delff <philip@delff.dk>
Diff between NMdata versions 0.1.3 dated 2023-11-11 and 0.1.4 dated 2024-01-09
DESCRIPTION | 6 - MD5 | 74 +++++++------ NAMESPACE | 2 NEWS.md | 39 ++++++- R/NMcheckData.R | 2 R/NMdataConf.R | 79 +++++++++++++- R/NMexpandDoses.R | 9 + R/NMextractDataFile.R | 2 R/NMextractText.R | 125 +++++++++++++++-------- R/NMreadCov.R | 4 R/NMreadExt.R | 99 +++++++++++++----- R/NMreadParsText.R |only R/NMreadPhi.R | 26 ++++ R/NMreadSection.R | 9 - R/NMscanData.R | 14 +- R/NMtransInp.R | 8 - R/NMwriteData.R | 2 R/NMwriteSectionOne.R | 16 +- R/colLabels.R |only R/fnAppend.R | 9 + man/NMdataConf.Rd | 29 ++++- man/NMextractText.Rd | 9 - man/NMreadCov.Rd | 2 man/NMreadExt.Rd | 36 ++++++ man/NMreadParsText.Rd |only man/NMreadPhi.Rd | 15 ++ man/NMreadSection.Rd | 13 +- man/colLabels.Rd |only tests/testthat/testReference/NMdataConf_01.rds |binary tests/testthat/testReference/NMdataConf_02.rds |binary tests/testthat/testReference/NMextractText_2.rds |binary tests/testthat/testReference/NMreadExt_02.rds |binary tests/testthat/testReference/NMreadExt_03.rds |binary tests/testthat/testReference/NMreadExt_04.rds |binary tests/testthat/testReference/NMreadExt_05.rds |binary tests/testthat/test_NMdataConf.R | 32 +++++ tests/testthat/test_NMextractText.R | 8 + tests/testthat/test_NMscanData.R | 3 tests/testthat/test_NMwriteSection.R | 5 tests/testthat/test_fnAppend.R | 14 ++ 40 files changed, 523 insertions(+), 168 deletions(-)
Title: Nonlinear Mixed Effects Models in Population PK/PD
Description: Fit and compare nonlinear mixed-effects models in differential
equations with flexible dosing information commonly seen in pharmacokinetics
and pharmacodynamics (Almquist, Leander, and Jirstrand 2015
<doi:10.1007/s10928-015-9409-1>). Differential equation solving is
by compiled C code provided in the 'rxode2' package
(Wang, Hallow, and James 2015 <doi:10.1002/psp4.12052>).
Author: Matthew Fidler [aut, cre] ,
Yuan Xiong [ctb],
Rik Schoemaker [ctb] ,
Justin Wilkins [ctb] ,
Wenping Wang [ctb],
Mirjam Trame [ctb],
Huijuan Xu [ctb],
John Harrold [ctb],
Bill Denney [ctb] ,
Theodoros Papathanasiou [ctb],
Teun Post [ctb],
Richard Hooi [...truncated...]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between nlmixr2 versions 2.0.9 dated 2023-02-20 and 2.1.0 dated 2024-01-09
DESCRIPTION | 16 +- MD5 | 34 +++--- NAMESPACE | 12 ++ NEWS.md | 6 - R/hardReexports.R | 15 +- R/nlmixr2CheckInstall.R | 30 ++++- R/reexports.R | 24 ++++ R/utils.R | 9 + README.md | 203 ++++++++++++++++++++++++++++-------- inst/CITATION | 30 ----- man/foceiControl.Rd | 45 ++++--- man/nlmeControl.Rd | 38 +++++- man/nlmixr2.Rd | 45 +++++++ man/reexports.Rd | 10 + man/saemControl.Rd | 34 +++++- man/vpcSim.Rd | 6 - tests/testthat/test-basic-nlmixr2.R | 14 +- tests/testthat/test-ini-pipe.R | 4 18 files changed, 421 insertions(+), 154 deletions(-)
Title: Utilities for Working with NEON Data
Description: NEON data packages can be accessed through the NEON Data Portal <https://www.neonscience.org>
or through the NEON Data API (see <https://data.neonscience.org/data-api> for documentation). Data delivered from
the Data Portal are provided as monthly zip files packaged within a parent zip file, while individual files
can be accessed from the API. This package provides tools that aid in discovering, downloading, and reformatting
data prior to use in analyses. This includes downloading data via the API, merging data tables by type, and
converting formats. For more information, see the readme file at <https://github.com/NEONScience/NEON-utilities>.
Author: Claire Lunch [aut, cre, ctb],
Christine Laney [aut, ctb],
Nathan Mietkiewicz [aut, ctb],
Eric Sokol [aut, ctb],
Kaelin Cawley [aut, ctb],
NEON [aut]
Maintainer: Claire Lunch <clunch@battelleecology.org>
Diff between neonUtilities versions 2.4.0 dated 2023-10-18 and 2.4.1 dated 2024-01-09
DESCRIPTION | 8 ++--- MD5 | 40 ++++++++++++------------- NEWS.md | 14 +++++++++ R/byFileAOP.R | 36 +++++++++++++++++------ R/byTileAOP.R | 32 ++++++++++++++++---- R/findTablesByFormat.R | 33 +++++++++++++-------- R/footRaster.R | 10 ++++-- R/getAPI.R | 8 +++-- R/getAPIHeaders.R | 8 +++-- R/getNeonDOI.R | 9 ++++- R/stackDataFilesParallel.R | 43 +-------------------------- R/stackEddy.R | 70 +++++++++++++++++++++++++-------------------- R/stackFromStore.R | 3 + R/sysdata.rda |binary R/unzipZipfileParallel.R | 5 +++ R/zipsByProduct.R | 19 +++++++++--- R/zipsByURI.R | 28 ++++++++++++++++-- README.md | 9 +++++ data/table_types.rda |binary man/stackEddy.Rd | 5 ++- man/zipsByURI.Rd | 5 ++- 21 files changed, 244 insertions(+), 141 deletions(-)
Title: Some Additional Multiple Imputation Functions, Especially for
'mice'
Description: Contains functions for multiple imputation which
complements existing functionality in R.
In particular, several imputation methods for the
mice package (van Buuren & Groothuis-Oudshoorn, 2011,
<doi:10.18637/jss.v045.i03>) are implemented.
Main features of the miceadds package include
plausible value imputation (Mislevy, 1991,
<doi:10.1007/BF02294457>), multilevel imputation for
variables at any level or with any number of hierarchical
and non-hierarchical levels (Grund, Luedtke & Robitzsch,
2018, <doi:10.1177/1094428117703686>; van Buuren, 2018,
Ch.7, <doi:10.1201/9780429492259>), imputation using
partial least squares (PLS) for high dimensional
predictors (Robitzsch, Pham & Yanagida, 2016),
nested multiple imputation (Rubin, 2003,
<doi:10.1111/1467-9574.00217>), substantive model
compatible imputation (Bartlett et al., 2015,
<doi:10.1177/0962280214521348>), and features
for the generation of synthetic datasets
(Reiter, 2005, <doi:10. [...truncated...]
Author: Alexander Robitzsch [aut,cre] ,
Simon Grund [aut] ,
Thorsten Henke [ctb]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between miceadds versions 3.16-18 dated 2023-01-06 and 3.17-44 dated 2024-01-09
DESCRIPTION | 12 +-- MD5 | 95 +++++++++++++-------------- NAMESPACE | 6 + R/ANSI_create_table.R | 5 - R/ANSI_create_table_check_variable_values.R | 4 - R/RcppExports.R | 4 - R/complete.miceadds.R | 25 +++---- R/datalist2mids.R | 2 R/mice.1chain.R | 18 ++--- R/mice.impute.2l.pmm.R | 2 R/mice.impute.pls.R | 19 ++++- R/mice_imputation_2l_lmer.R | 2 R/mice_imputation_pls_do_impute.R | 4 - R/mice_imputation_pls_include_derived_vars.R |only R/mice_imputation_pls_pca_reduction.R | 14 ++- R/mice_multilevel_add_groupmeans.R | 3 R/syn_da_create_formula.R | 2 R/systime.R | 3 build/partial.rdb |binary data/data.allison.gssexp.rda |binary data/data.allison.hip.rda |binary data/data.allison.usnews.rda |binary data/data.enders.depression.rda |binary data/data.enders.eatingattitudes.rda |binary data/data.enders.employee.rda |binary data/data.graham.ex3.rda |binary data/data.graham.ex6.rda |binary data/data.graham.ex8a.rda |binary data/data.graham.ex8b.rda |binary data/data.graham.ex8c.rda |binary data/data.internet.rda |binary data/data.largescale.rda |binary data/data.ma01.rda |binary data/data.ma02.rda |binary data/data.ma03.rda |binary data/data.ma04.rda |binary data/data.ma05.rda |binary data/data.ma06.rda |binary data/data.ma07.rda |binary data/data.ma08.rda |binary data/data.ma09.rda |binary data/data.smallscale.rda |binary inst/CITATION | 5 - inst/NEWS | 22 +++++- man/complete.miceadds.Rd | 13 ++- man/lm.cluster.Rd | 54 +++++++++++++++ man/mice.impute.pls.Rd | 19 ++++- src/RcppExports.cpp | 70 +++++++++---------- src/miceadds_rcpp_ml_mcmc_sub.cpp | 52 +++++++------- 49 files changed, 283 insertions(+), 172 deletions(-)
Title: Utilities to Weave Hydrologic Fabrics
Description: A collection of utilities that support creation of network attributes for hydrologic networks. Methods and algorithms implemented are documented in Moore et al. (2019) <doi:10.3133/ofr20191096>), Cormen and Leiserson (2022) <ISBN:9780262046305> and Verdin and Verdin (1999) <doi:10.1016/S0022-1694(99)00011-6>.
Author: David Blodgett [aut, cre]
Maintainer: David Blodgett <dblodgett@usgs.gov>
Diff between hydroloom versions 1.0.0 dated 2023-09-29 and 1.0.1 dated 2024-01-09
DESCRIPTION | 6 MD5 | 44 + NEWS.md | 5 R/add_levelpaths.R | 3 R/make_index_ids.R | 2 README.md | 11 build/vignette.rds |binary inst/CITATION |only inst/doc/advanced_network.R | 4 inst/doc/advanced_network.html | 10 inst/doc/flow-table.R | 10 inst/doc/flow-table.Rmd | 4 inst/doc/flow-table.html | 704 ++++++++++++++++++++++--------- inst/doc/hydroloom.R | 2 inst/doc/hydroloom.html | 2 inst/doc/non-dendritic.R | 2 inst/doc/non-dendritic.Rmd | 2 inst/doc/non-dendritic.html | 2 tests/testthat/test_add_pfafstetter.R | 2 tests/testthat/test_get_hydro_location.R | 2 tests/testthat/test_index.R | 13 vignettes/flow-table-fig.jpeg |only vignettes/flow-table.Rmd | 4 vignettes/non-dendritic.Rmd | 2 24 files changed, 597 insertions(+), 239 deletions(-)
Title: Download Official Spatial Data Sets of Brazil
Description: Easy access to official spatial data sets of Brazil as 'sf' objects
in R. The package includes a wide range of geospatial data available
at various geographic scales and for various years with harmonized
attributes, projection and fixed topology.
Author: Rafael H. M. Pereira [aut, cre]
,
Caio Nogueira Goncalves [aut],
Paulo Henrique Fernandes de Araujo [ctb],
Guilherme Duarte Carvalho [ctb],
Rodrigo Almeida de Arruda [ctb],
Igor Nascimento [ctb],
Barbara Santiago Pedreira da Costa [ctb],
Welligtton S [...truncated...]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between geobr versions 1.8.1 dated 2023-09-21 and 1.8.2 dated 2024-01-09
DESCRIPTION | 12 ++++++----- MD5 | 24 +++++++++++------------ R/read_capitals.R | 5 ++-- R/read_comparable_areas.R | 4 +-- R/read_disaster_risk_area.R | 18 ++++++++--------- data/grid_state_correspondence_table.RData |binary inst/doc/intro_to_geobr.R | 30 +++++++++++------------------ inst/doc/intro_to_geobr.Rmd | 30 +++++++++++------------------ man/geobr.Rd | 2 + man/read_comparable_areas.Rd | 4 +-- man/read_disaster_risk_area.Rd | 18 ++++++++--------- tests/tests_rafa/test_rafa.R | 5 ---- vignettes/intro_to_geobr.Rmd | 30 +++++++++++------------------ 13 files changed, 83 insertions(+), 99 deletions(-)
Title: Combined Analysis of Pleiotropy and Epistasis for Diversity
Outbred Mice
Description: Combined Analysis of Pleiotropy and Epistasis infers predictive
networks between genetic variants and phenotypes. It can be used with
standard two-parent populations as well as multi-parent populations, such
as the Diversity Outbred (DO) mice, Collaborative Cross (CC) mice, or the
multi-parent advanced generation intercross (MAGIC) population of Arabidopsis
thaliana. It uses complementary information of pleiotropic gene variants across
different phenotypes to resolve models of epistatic interactions between alleles.
To do this, cape reparametrizes main effect and interaction coefficients from
pairwise variant regressions into directed influence parameters. These
parameters describe how alleles influence each other, in terms of suppression
and enhancement, as well as how gene variants influence phenotypes. All of the
final interactions are reported as directed interactions between pairs of
parental alleles. For detailed descriptions of the methods used in this package
please see the fol [...truncated...]
Author: Anna Tyler [aut, cre],
Jake Emerson [aut],
Baha El Kassaby [aut],
Ann Wells [aut],
Georgi Kolishovski [aut],
Vivek Philip [aut],
Gregory Carter [aut]
Maintainer: Anna Tyler <anna.tyler@jax.org>
Diff between cape versions 3.1.1 dated 2022-05-19 and 3.1.2 dated 2024-01-09
cape-3.1.1/cape/demo/demo_PLINK/plink.parameters.yml |only cape-3.1.1/cape/demo/demo_qtl/NON_NZO.parameters.yml |only cape-3.1.1/cape/demo/demo_qtl2/iron.parameters.yml |only cape-3.1.1/cape/demo/demo_rds/NON_NZO.parameters.yml |only cape-3.1.1/cape/vignettes/cape.md |only cape-3.1.2/cape/DESCRIPTION | 9 cape-3.1.2/cape/MD5 | 187 + cape-3.1.2/cape/NEWS.md | 10 cape-3.1.2/cape/R/calc_p.R | 4 cape-3.1.2/cape/R/cape2mpp.R | 4 cape-3.1.2/cape/R/direct_influence.R | 4 cape-3.1.2/cape/R/error_prop.R | 7 cape-3.1.2/cape/R/get_covar.R | 5 cape-3.1.2/cape/R/get_eigentraits.R | 4 cape-3.1.2/cape/R/get_geno.R | 5 cape-3.1.2/cape/R/get_geno_with_covar.R | 5 cape-3.1.2/cape/R/get_marker_chr.R | 6 cape-3.1.2/cape/R/get_marker_location.R | 6 cape-3.1.2/cape/R/get_marker_name.R | 4 cape-3.1.2/cape/R/get_network.R | 5 cape-3.1.2/cape/R/get_pairs_for_pairscan.R | 6 cape-3.1.2/cape/R/get_pheno.R | 15 cape-3.1.2/cape/R/hist_pheno.R | 5 cape-3.1.2/cape/R/kin_adjust.R | 2 cape-3.1.2/cape/R/kinship.R | 79 cape-3.1.2/cape/R/load_input_and_run_cape.R | 9 cape-3.1.2/cape/R/marker2covar.R | 11 cape-3.1.2/cape/R/norm_pheno.R | 5 cape-3.1.2/cape/R/pairscan.R | 5 cape-3.1.2/cape/R/pheno2covar.R | 5 cape-3.1.2/cape/R/plink2cape.R | 5 cape-3.1.2/cape/R/plot_effects.R | 7 cape-3.1.2/cape/R/plot_full_network.R | 4 cape-3.1.2/cape/R/plot_network.R | 4 cape-3.1.2/cape/R/plot_pairscan.R | 5 cape-3.1.2/cape/R/plot_pheno_cor.R | 7 cape-3.1.2/cape/R/plot_singlescan.R | 5 cape-3.1.2/cape/R/plot_svd.R | 9 cape-3.1.2/cape/R/plot_variant_influences.R | 5 cape-3.1.2/cape/R/qnorm_pheno.R | 5 cape-3.1.2/cape/R/qtl2_to_cape.R | 6 cape-3.1.2/cape/R/read_parameters.R | 5 cape-3.1.2/cape/R/remove_kin_ind.R | 5 cape-3.1.2/cape/R/remove_unused_markers.R | 5 cape-3.1.2/cape/R/select_markers_for_pairscan.R | 6 cape-3.1.2/cape/R/singlescan.R | 6 cape-3.1.2/cape/build/vignette.rds |binary cape-3.1.2/cape/demo/demo_PLINK/0_plink.parameters_0.yml |only cape-3.1.2/cape/demo/demo_PLINK/data |only cape-3.1.2/cape/demo/demo_qtl/0_NON_NZO.parameters_0.yml |only cape-3.1.2/cape/demo/demo_qtl/data |only cape-3.1.2/cape/demo/demo_qtl2/0_iron.parameters_0.yml |only cape-3.1.2/cape/demo/demo_qtl2/data |only cape-3.1.2/cape/demo/demo_rds/0_NON_NZO.parameters_0.yml |only cape-3.1.2/cape/demo/demo_rds/data |only cape-3.1.2/cape/inst/doc/cape.R | 26 cape-3.1.2/cape/inst/doc/cape.Rmd | 88 cape-3.1.2/cape/inst/doc/cape.html | 1438 +++++++++++---- cape-3.1.2/cape/man/Cape-class.Rd | 96 - cape-3.1.2/cape/man/calc_p.Rd | 5 cape-3.1.2/cape/man/cape2mpp.Rd | 5 cape-3.1.2/cape/man/direct_influence.Rd | 6 cape-3.1.2/cape/man/error_prop.Rd | 8 cape-3.1.2/cape/man/get_covar.Rd | 6 cape-3.1.2/cape/man/get_eigentraits.Rd | 5 cape-3.1.2/cape/man/get_geno.Rd | 6 cape-3.1.2/cape/man/get_marker_chr.Rd | 7 cape-3.1.2/cape/man/get_marker_location.Rd | 7 cape-3.1.2/cape/man/get_marker_name.Rd | 6 cape-3.1.2/cape/man/get_network.Rd | 6 cape-3.1.2/cape/man/get_pairs_for_pairscan.Rd | 7 cape-3.1.2/cape/man/get_pheno.Rd | 16 cape-3.1.2/cape/man/hist_pheno.Rd | 6 cape-3.1.2/cape/man/kinship.Rd | 12 cape-3.1.2/cape/man/load_input_and_run_cape.Rd | 10 cape-3.1.2/cape/man/marker2covar.Rd | 12 cape-3.1.2/cape/man/norm_pheno.Rd | 6 cape-3.1.2/cape/man/pairscan.Rd | 6 cape-3.1.2/cape/man/pheno2covar.Rd | 6 cape-3.1.2/cape/man/plink2cape.Rd | 6 cape-3.1.2/cape/man/plot_effects.Rd | 8 cape-3.1.2/cape/man/plot_full_network.Rd | 6 cape-3.1.2/cape/man/plot_network.Rd | 5 cape-3.1.2/cape/man/plot_pairscan.Rd | 6 cape-3.1.2/cape/man/plot_pheno_cor.Rd | 6 cape-3.1.2/cape/man/plot_singlescan.Rd | 6 cape-3.1.2/cape/man/plot_svd.Rd | 10 cape-3.1.2/cape/man/plot_variant_influences.Rd | 6 cape-3.1.2/cape/man/qnorm_pheno.Rd | 6 cape-3.1.2/cape/man/qtl2_to_cape.Rd | 7 cape-3.1.2/cape/man/read_parameters.Rd | 6 cape-3.1.2/cape/man/remove_kin_ind.Rd | 6 cape-3.1.2/cape/man/remove_unused_markers.Rd | 6 cape-3.1.2/cape/man/select_markers_for_pairscan.Rd | 7 cape-3.1.2/cape/man/singlescan.Rd | 6 cape-3.1.2/cape/vignettes/cape.Rmd | 88 96 files changed, 1453 insertions(+), 1030 deletions(-)
Title: Dynamic Function-Oriented 'Make'-Like Declarative Pipelines
Description: Pipeline tools coordinate the pieces of computationally
demanding analysis projects.
The 'targets' package is a 'Make'-like pipeline tool for statistics and
data science in R. The package skips costly runtime for tasks
that are already up to date,
orchestrates the necessary computation with implicit parallel computing,
and abstracts files as R objects. If all the current output matches
the current upstream code and data, then the whole pipeline is up
to date, and the results are more trustworthy than otherwise.
The methodology in this package
borrows from GNU 'Make' (2015, ISBN:978-9881443519)
and 'drake' (2018, <doi:10.21105/joss.00550>).
Author: William Michael Landau [aut, cre]
,
Matthew T. Warkentin [ctb],
Mark Edmondson [ctb] ,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between targets versions 1.4.0 dated 2023-12-11 and 1.4.1 dated 2024-01-09
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ NEWS.md | 7 +++++++ R/class_progress.R | 27 ++++++++++++++++++--------- R/tar_debug_instructions.R | 7 ++++--- R/tar_make_clustermq.R | 2 +- R/utils_cli.R | 22 ++++++++++++++++++---- R/utils_imports.R | 6 +++++- tests/testthat/helper-utils.R | 2 +- tests/testthat/test-class_clustermq.R | 7 ------- tests/testthat/test-class_torch.R | 1 - tests/testthat/test-tar_make_clustermq.R | 6 ------ tests/testthat/test-utils_cli.R | 17 +++++++++++------ 13 files changed, 81 insertions(+), 55 deletions(-)
Title: Archetypes for Targets
Description: Function-oriented Make-like declarative pipelines for
Statistics and data science are supported in the 'targets' R package.
As an extension to 'targets', the 'tarchetypes' package provides
convenient user-side functions to make 'targets' easier to use.
By establishing reusable archetypes for common kinds of
targets and pipelines, these functions help express complicated
reproducible pipelines concisely and compactly.
The methods in this package were influenced by the 'drake' R package
by Will Landau (2018) <doi:10.21105/joss.00550>.
Author: William Michael Landau [aut, cre]
,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between tarchetypes versions 0.7.10 dated 2023-12-04 and 0.7.11 dated 2024-01-09
tarchetypes-0.7.10/tarchetypes/R/utils_seed.R |only tarchetypes-0.7.11/tarchetypes/DESCRIPTION | 8 tarchetypes-0.7.11/tarchetypes/MD5 | 113 ++++++-------- tarchetypes-0.7.11/tarchetypes/NAMESPACE | 2 tarchetypes-0.7.11/tarchetypes/NEWS.md | 6 tarchetypes-0.7.11/tarchetypes/R/tar_map2_raw.R | 2 tarchetypes-0.7.11/tarchetypes/R/tar_package.R | 2 tarchetypes-0.7.11/tarchetypes/R/tar_quarto.R | 1 tarchetypes-0.7.11/tarchetypes/R/tar_quarto_raw.R | 1 tarchetypes-0.7.11/tarchetypes/R/tar_quarto_rep.R | 1 tarchetypes-0.7.11/tarchetypes/R/tar_quarto_rep_raw.R | 3 tarchetypes-0.7.11/tarchetypes/R/tar_render.R | 12 + tarchetypes-0.7.11/tarchetypes/R/tar_render_raw.R | 1 tarchetypes-0.7.11/tarchetypes/R/tar_render_rep.R | 1 tarchetypes-0.7.11/tarchetypes/R/tar_render_rep_raw.R | 3 tarchetypes-0.7.11/tarchetypes/R/tar_rep2_raw.R | 6 tarchetypes-0.7.11/tarchetypes/R/tar_rep_raw.R | 5 tarchetypes-0.7.11/tarchetypes/man/tar_age.Rd | 10 - tarchetypes-0.7.11/tarchetypes/man/tar_change.Rd | 14 - tarchetypes-0.7.11/tarchetypes/man/tar_combine.Rd | 10 - tarchetypes-0.7.11/tarchetypes/man/tar_combine_raw.Rd | 10 - tarchetypes-0.7.11/tarchetypes/man/tar_download.Rd | 12 - tarchetypes-0.7.11/tarchetypes/man/tar_file_read.Rd | 14 - tarchetypes-0.7.11/tarchetypes/man/tar_files.Rd | 14 - tarchetypes-0.7.11/tarchetypes/man/tar_files_input.Rd | 6 tarchetypes-0.7.11/tarchetypes/man/tar_files_input_raw.Rd | 6 tarchetypes-0.7.11/tarchetypes/man/tar_files_raw.Rd | 14 - tarchetypes-0.7.11/tarchetypes/man/tar_force.Rd | 14 - tarchetypes-0.7.11/tarchetypes/man/tar_formats.Rd | 14 - tarchetypes-0.7.11/tarchetypes/man/tar_group_by.Rd | 14 - tarchetypes-0.7.11/tarchetypes/man/tar_group_count.Rd | 14 - tarchetypes-0.7.11/tarchetypes/man/tar_group_select.Rd | 14 - tarchetypes-0.7.11/tarchetypes/man/tar_group_size.Rd | 14 - tarchetypes-0.7.11/tarchetypes/man/tar_knit.Rd | 14 - tarchetypes-0.7.11/tarchetypes/man/tar_knit_raw.Rd | 10 - tarchetypes-0.7.11/tarchetypes/man/tar_map2.Rd | 10 - tarchetypes-0.7.11/tarchetypes/man/tar_map2_count.Rd | 14 - tarchetypes-0.7.11/tarchetypes/man/tar_map2_count_raw.Rd | 14 - tarchetypes-0.7.11/tarchetypes/man/tar_map2_raw.Rd | 10 - tarchetypes-0.7.11/tarchetypes/man/tar_map2_size.Rd | 14 - tarchetypes-0.7.11/tarchetypes/man/tar_map2_size_raw.Rd | 14 - tarchetypes-0.7.11/tarchetypes/man/tar_map_rep.Rd | 14 - tarchetypes-0.7.11/tarchetypes/man/tar_map_rep_raw.Rd | 14 - tarchetypes-0.7.11/tarchetypes/man/tar_quarto.Rd | 29 ++- tarchetypes-0.7.11/tarchetypes/man/tar_quarto_raw.Rd | 27 ++- tarchetypes-0.7.11/tarchetypes/man/tar_quarto_rep.Rd | 29 ++- tarchetypes-0.7.11/tarchetypes/man/tar_quarto_rep_raw.Rd | 29 ++- tarchetypes-0.7.11/tarchetypes/man/tar_render.Rd | 29 ++- tarchetypes-0.7.11/tarchetypes/man/tar_render_raw.Rd | 25 ++- tarchetypes-0.7.11/tarchetypes/man/tar_render_rep.Rd | 29 ++- tarchetypes-0.7.11/tarchetypes/man/tar_render_rep_raw.Rd | 29 ++- tarchetypes-0.7.11/tarchetypes/man/tar_rep.Rd | 14 - tarchetypes-0.7.11/tarchetypes/man/tar_rep2.Rd | 14 - tarchetypes-0.7.11/tarchetypes/man/tar_rep2_raw.Rd | 14 - tarchetypes-0.7.11/tarchetypes/man/tar_rep_map.Rd | 14 - tarchetypes-0.7.11/tarchetypes/man/tar_rep_map_raw.Rd | 14 - tarchetypes-0.7.11/tarchetypes/man/tar_rep_raw.Rd | 14 - tarchetypes-0.7.11/tarchetypes/man/tar_skip.Rd | 14 - 58 files changed, 480 insertions(+), 333 deletions(-)
Title: Structure for Organizing Monte Carlo Simulation Designs
Description: Provides tools to safely and efficiently organize and execute
Monte Carlo simulation experiments in R.
The package controls the structure and back-end of Monte Carlo simulation experiments
by utilizing a generate-analyse-summarise workflow. The workflow safeguards against
common simulation coding issues, such as automatically re-simulating non-convergent results,
prevents inadvertently overwriting simulation files, catches error and warning messages
during execution, and implicitly supports parallel processing.
For a pedagogical introduction to the package see
Sigal and Chalmers (2016) <doi:10.1080/10691898.2016.1246953>. For a more in-depth overview of
the package and its design philosophy see Chalmers and Adkins (2020) <doi:10.20982/tqmp.16.4.p248>.
Author: Phil Chalmers [aut, cre] ,
Matthew Sigal [ctb],
Ogreden Oguzhan [ctb]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between SimDesign versions 2.13 dated 2023-10-17 and 2.14 dated 2024-01-09
DESCRIPTION | 6 MD5 | 89 +++++----- NAMESPACE | 10 + NEWS.md | 35 ++++ R/Attach.R | 83 +++++++-- R/PBA.R | 114 +++++++++---- R/RobbinsMonro.R |only R/SFA.R |only R/SimBoot.R | 8 R/SimDesign.R | 1 R/SimSolve.R | 330 ++++++++++++++++++++++++++++++--------- R/convertWarnings.R |only R/functions.R | 2 R/reSummarise.R | 8 R/rejectionSampling.R | 2 R/runSimulation.R | 76 ++++++-- R/summary_functions.R | 21 +- R/util.R | 124 +++++++++++++- build/vignette.rds |binary inst/doc/Catch_errors.R | 39 ++++ inst/doc/Catch_errors.Rmd | 57 ++++++ inst/doc/Catch_errors.html | 62 ++++++- inst/doc/Fixed_obj_fun.html | 16 - inst/doc/MultipleAnalyses.Rmd | 2 inst/doc/MultipleAnalyses.html | 4 inst/doc/Parallel-computing.Rmd | 2 inst/doc/Parallel-computing.html | 4 inst/doc/Saving-results.R | 13 - inst/doc/Saving-results.Rmd | 41 ++-- inst/doc/Saving-results.html | 128 +++++++-------- inst/doc/SimDesign-intro.html | 20 +- man/Analyse.Rd | 2 man/Attach.Rd | 63 ++++++- man/EDR.Rd | 9 - man/PBA.Rd | 32 ++- man/RSE.Rd | 4 man/RobbinsMonro.Rd |only man/SFA.Rd |only man/SimSolve.Rd | 243 +++++++++++++++++++++------- man/colVars.Rd |only man/convertWarnings.Rd |only man/reSummarise.Rd | 5 man/rejectionSampling.Rd | 2 man/runSimulation.Rd | 55 ++++-- tests/tests/test-SimDesign.R | 51 ++++-- vignettes/Catch_errors.Rmd | 57 ++++++ vignettes/MultipleAnalyses.Rmd | 2 vignettes/Parallel-computing.Rmd | 2 vignettes/Saving-results.Rmd | 41 ++-- 49 files changed, 1377 insertions(+), 488 deletions(-)
Title: Phylogenetic Tools for Comparative Biology (and Other Things)
Description: A wide range of methods for phylogenetic analysis - concentrated in phylogenetic comparative biology, but also including numerous techniques for visualizing, analyzing, manipulating, reading or writing, and even inferring phylogenetic trees. Included among the functions in phylogenetic comparative biology are various for ancestral state reconstruction, model-fitting, and simulation of phylogenies and trait data. A broad range of plotting methods for phylogenies and comparative data include (but are not restricted to) methods for mapping trait evolution on trees, for projecting trees into phenotype space or a onto a geographic map, and for visualizing correlated speciation between trees. Lastly, numerous functions are designed for reading, writing, analyzing, inferring, simulating, and manipulating phylogenetic trees and comparative data. For instance, there are functions for computing consensus phylogenies from a set, for simulating phylogenetic trees and data under a range of models, [...truncated...]
Author: Liam J. Revell
Maintainer: Liam J. Revell <liam.revell@umb.edu>
Diff between phytools versions 2.0-3 dated 2023-11-09 and 2.1-1 dated 2024-01-09
DESCRIPTION | 8 MD5 | 398 +++++++++++++++++++++---------------------- NAMESPACE | 14 + R/anc.Bayes.R | 2 R/asr.R | 83 ++++++++ R/fitBiogeog.R |only R/fitMk.R | 8 R/fitgammaMk.R |only R/fitmultiMk.R | 7 R/fitpolyMk.R | 12 - R/parsimony.R | 38 ++++ R/plotSimmap.R | 33 +++ R/ratebystate.R | 2 R/utilities.R | 5 data/ant.geog.rda |only data/ant.tree.rda |only data/datalist | 3 data/whale.tree.rda |only inst/CITATION | 15 - man/Dtest.Rd | 2 man/add.arrow.Rd | 2 man/add.color.bar.Rd | 2 man/add.everywhere.Rd | 2 man/add.random.Rd | 2 man/add.simmap.legend.Rd | 2 man/add.species.to.genus.Rd | 2 man/aic.w.Rd | 2 man/allFurcTrees.Rd | 2 man/anc.Bayes.Rd | 2 man/anc.ML.Rd | 2 man/anc.trend.Rd | 2 man/ancThresh.Rd | 2 man/ancr.Rd | 4 man/anoletree.Rd | 26 ++ man/ansi_phylo.Rd | 2 man/applyBranchLengths.Rd | 2 man/as.Qmatrix.Rd | 4 man/as.multiPhylo.Rd | 2 man/ave.rates.Rd | 2 man/averageTree.Rd | 2 man/bd.Rd | 2 man/bind.tip.Rd | 2 man/bind.tree.simmap.Rd | 2 man/bmPlot.Rd | 6 man/branching.diffusion.Rd | 2 man/brownie.lite.Rd | 4 man/brownieREML.Rd | 6 man/cladelabels.Rd | 2 man/collapse.to.star.Rd | 2 man/collapseTree.Rd | 2 man/compare.chronograms.Rd | 2 man/consensus.edges.Rd | 3 man/contMap.Rd | 12 - man/cophylo.Rd | 2 man/cospeciation.Rd | 2 man/countSimmap.Rd | 2 man/ctt.Rd | 2 man/density.multiSimmap.Rd | 2 man/densityMap.Rd | 10 - man/densityTree.Rd | 2 man/describe.simmap.Rd | 2 man/di2multi.simmap.Rd | 2 man/dotTree.Rd | 2 man/drop.clade.Rd | 2 man/drop.leaves.Rd | 2 man/drop.tip.contMap.Rd | 2 man/drop.tip.multiSimmap.Rd | 2 man/drop.tip.simmap.Rd | 2 man/edge.widthMap.Rd | 2 man/edgeProbs.Rd | 2 man/estDiversity.Rd | 2 man/evol.rate.mcmc.Rd | 6 man/evol.vcv.Rd | 4 man/evolvcv.lite.Rd | 2 man/exhaustiveMP.Rd | 2 man/expand.clade.Rd | 2 man/export.as.xml.Rd | 2 man/fancyTree.Rd | 8 man/fastAnc.Rd | 2 man/fastBM.Rd | 2 man/fastMRCA.Rd | 2 man/findMRCA.Rd | 2 man/fit.bd.Rd | 4 man/fitBayes.Rd | 2 man/fitDiversityModel.Rd | 4 man/fitMk.Rd | 13 + man/fitPagel.Rd | 2 man/force.ultrametric.Rd | 2 man/gamma_pruning.Rd |only man/gammatest.Rd | 2 man/genSeq.Rd | 2 man/geo.legend.Rd | 2 man/get.treepos.Rd | 2 man/getCladesofSize.Rd | 2 man/getDescendants.Rd | 2 man/getExtant.Rd | 2 man/getSisters.Rd | 2 man/getStates.Rd | 2 man/labelnodes.Rd | 2 man/ladderize.simmap.Rd | 2 man/lambda.transform.Rd | 2 man/likMlambda.Rd | 2 man/linklabels.Rd | 2 man/locate.fossil.Rd | 2 man/locate.yeti.Rd | 2 man/ls.tree.Rd | 2 man/ltt.Rd | 2 man/ltt95.Rd | 2 man/make.era.map.Rd | 2 man/make.simmap.Rd | 6 man/map.overlap.Rd | 2 man/map.to.singleton.Rd | 2 man/mapped.states.Rd | 2 man/markChanges.Rd | 2 man/matchNodes.Rd | 2 man/mergeMappedStates.Rd | 2 man/midpoint.root.Rd | 2 man/minRotate.Rd | 2 man/minSplit.Rd | 2 man/modified.Grafen.Rd | 2 man/mrp.supertree.Rd | 2 man/multi.mantel.Rd | 4 man/multiC.Rd | 2 man/multiRF.Rd | 4 man/multirateBM.Rd | 4 man/nodeHeights.Rd | 2 man/nodelabels.cophylo.Rd | 2 man/optim.phylo.ls.Rd | 2 man/orderMappedEdge.Rd | 2 man/paintSubTree.Rd | 2 man/paste.tree.Rd | 2 man/pbtree.Rd | 2 man/pgls.Ives.Rd | 2 man/phenogram.Rd | 8 man/phyl.RMA.Rd | 2 man/phyl.cca.Rd | 2 man/phyl.pairedttest.Rd | 2 man/phyl.pca.Rd | 2 man/phyl.resid.Rd | 2 man/phyl.vcv.Rd | 4 man/phylANOVA.Rd | 6 man/phylo.heatmap.Rd | 2 man/phylo.impute.Rd | 2 man/phylo.to.map.Rd | 4 man/phylo.toBackbone.Rd | 2 man/phyloDesign.Rd | 2 man/phylomorphospace.Rd | 4 man/phylomorphospace3d.Rd | 4 man/phylosig.Rd | 6 man/phytools-package.Rd | 2 man/plot.backbonePhylo.Rd | 2 man/plotBranchbyTrait.Rd | 2 man/plotSimmap.Rd | 6 man/plotThresh.Rd | 4 man/plotTree.Rd | 4 man/plotTree.datamatrix.Rd | 2 man/plotTree.errorbars.Rd | 2 man/plotTree.wBars.Rd | 2 man/posterior.evolrate.Rd | 2 man/posthoc.Rd | 3 man/print.backbonePhylo.Rd | 2 man/pscore.Rd | 4 man/ratebystate.Rd | 2 man/ratebytree.Rd | 8 man/rateshift.Rd | 4 man/read.newick.Rd | 2 man/read.simmap.Rd | 2 man/reorder.backbonePhylo.Rd | 2 man/reorderSimmap.Rd | 2 man/rep.phylo.Rd | 2 man/reroot.Rd | 2 man/rerootingMethod.Rd | 2 man/rescale.Rd | 2 man/rescaleSimmap.Rd | 2 man/resolveNode.Rd | 2 man/rotateNodes.Rd | 2 man/roundBranches.Rd | 2 man/roundPhylogram.Rd | 2 man/rstate.Rd | 2 man/sampleFrom.Rd | 2 man/setMap.Rd | 6 man/sim.corrs.Rd | 2 man/sim.history.Rd | 2 man/sim.ratebystate.Rd | 2 man/sim.rates.Rd | 2 man/simBMphylo.Rd | 2 man/skewers.Rd | 4 man/splitEdgeColor.Rd | 2 man/splitTree.Rd | 2 man/splitplotTree.Rd | 2 man/starTree.Rd | 2 man/strahlerNumber.Rd | 2 man/threshBayes.Rd | 4 man/threshDIC.Rd | 6 man/threshState.Rd | 4 man/to.matrix.Rd | 2 man/tree.grow.Rd | 2 man/treeSlice.Rd | 2 man/untangle.Rd | 2 man/vcvPhylo.Rd | 2 man/write.simmap.Rd | 2 man/writeAncestors.Rd | 2 man/writeNexus.Rd | 2 203 files changed, 698 insertions(+), 445 deletions(-)
Title: Multidimensional Poverty Index (MPI)
Description: A set of easy-to-use functions for computing the Multidimensional Poverty Index (MPI).
Author: Bhas Abdulsamad [aut, cre, cph]
Maintainer: Bhas Abdulsamad <aeabdulsamad@gmail.com>
Diff between mpindex versions 0.2.0 dated 2023-09-12 and 0.2.1 dated 2024-01-09
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Title: Graceful 'ggplot'-Based Graphics and Other Functions for GAMs
Fitted Using 'mgcv'
Description: Graceful 'ggplot'-based graphics and utility functions for working with generalized additive models (GAMs) fitted using the 'mgcv' package. Provides a reimplementation of the plot() method for GAMs that 'mgcv' provides, as well as 'tidyverse' compatible representations of estimated smooths.
Author: Gavin L. Simpson [aut, cre] ,
Henrik Singmann [ctb]
Maintainer: Gavin L. Simpson <ucfagls@gmail.com>
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Title: Semi-Parametric Joint Modeling of Longitudinal and Survival Data
Description: Maximum likelihood estimation for the semi-parametric joint modeling of competing risks and longitudinal data applying customized linear scan algorithms, proposed by Li and colleagues (2022) <doi:10.1155/2022/1362913>.
The time-to-event data is modelled using a (cause-specific) Cox proportional hazards regression model with time-fixed covariates. The longitudinal
outcome is modelled using a linear mixed effects model. The association is captured by shared random effects. The model
is estimated using an Expectation Maximization algorithm.
Author: Shanpeng Li [aut, cre],
Ning Li [ctb],
Hong Wang [ctb],
Jin Zhou [ctb],
Hua Zhou [ctb],
Gang Li [ctb]
Maintainer: Shanpeng Li <lishanpeng0913@ucla.edu>
Diff between FastJM versions 1.4.0 dated 2023-10-10 and 1.4.1 dated 2024-01-09
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/MAEQjmcs.R | 3 +-- R/jmcs.R | 7 +++++-- R/survfitjmcs.R | 32 ++++++++++++++++---------------- src/getCov.cpp | 2 +- src/getCovSF.cpp | 2 +- 8 files changed, 39 insertions(+), 33 deletions(-)
Title: A Distributed Worker Launcher Framework
Description: In computationally demanding analysis projects,
statisticians and data scientists asynchronously
deploy long-running tasks to distributed systems,
ranging from traditional clusters to cloud services.
The 'NNG'-powered 'mirai' R package by Gao (2023)
<https://CRAN.R-project.org/package=mirai> is a sleek
and sophisticated scheduler that
efficiently processes these intense workloads.
The 'crew' package extends 'mirai' with a unifying
interface for third-party worker launchers.
Inspiration also comes from packages.
'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>,
'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>,
'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>),
and 'batchtools' by Lang, Bischel, and Surmann (2017)
<doi:10.21105/joss.00135>.
Author: William Michael Landau [aut, cre]
,
Daniel Woodie [ctb],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between crew versions 0.7.0 dated 2023-12-11 and 0.8.0 dated 2024-01-09
crew-0.7.0/crew/tests/testthat/test-crew_clean.R |only crew-0.8.0/crew/DESCRIPTION | 8 crew-0.8.0/crew/MD5 | 142 ++++--- crew-0.8.0/crew/NAMESPACE | 10 crew-0.8.0/crew/NEWS.md | 9 crew-0.8.0/crew/R/crew_async.R | 5 crew-0.8.0/crew/R/crew_clean.R | 8 crew-0.8.0/crew/R/crew_client.R | 7 crew-0.8.0/crew/R/crew_controller.R | 44 +- crew-0.8.0/crew/R/crew_controller_group.R | 4 crew-0.8.0/crew/R/crew_controller_local.R | 13 crew-0.8.0/crew/R/crew_eval.R | 2 crew-0.8.0/crew/R/crew_launcher.R | 35 - crew-0.8.0/crew/R/crew_launcher_local.R | 182 ++++++++- crew-0.8.0/crew/R/crew_monitor_local.R |only crew-0.8.0/crew/R/crew_package.R | 3 crew-0.8.0/crew/R/crew_terminate_process.R |only crew-0.8.0/crew/R/crew_terminate_signal.R |only crew-0.8.0/crew/R/crew_worker.R | 5 crew-0.8.0/crew/R/utils_logic.R | 8 crew-0.8.0/crew/inst/WORDLIST | 7 crew-0.8.0/crew/inst/doc/introduction.R | 12 crew-0.8.0/crew/inst/doc/introduction.Rmd | 25 + crew-0.8.0/crew/inst/doc/introduction.html | 43 ++ crew-0.8.0/crew/inst/doc/plugins.R | 16 crew-0.8.0/crew/inst/doc/plugins.Rmd | 60 +++ crew-0.8.0/crew/inst/doc/plugins.html | 69 +++ crew-0.8.0/crew/inst/doc/risks.Rmd | 10 crew-0.8.0/crew/inst/doc/risks.html | 44 ++ crew-0.8.0/crew/man/crew_assert.Rd | 2 crew-0.8.0/crew/man/crew_async.Rd | 1 crew-0.8.0/crew/man/crew_class_controller.Rd | 4 crew-0.8.0/crew/man/crew_class_controller_group.Rd | 4 crew-0.8.0/crew/man/crew_class_launcher_local.Rd | 145 +++++++ crew-0.8.0/crew/man/crew_class_monitor_local.Rd |only crew-0.8.0/crew/man/crew_clean.Rd | 4 crew-0.8.0/crew/man/crew_client.Rd | 2 crew-0.8.0/crew/man/crew_controller_local.Rd | 17 crew-0.8.0/crew/man/crew_deprecate.Rd | 2 crew-0.8.0/crew/man/crew_eval.Rd | 2 crew-0.8.0/crew/man/crew_launcher.Rd | 8 crew-0.8.0/crew/man/crew_launcher_local.Rd | 25 + crew-0.8.0/crew/man/crew_monitor_local.Rd |only crew-0.8.0/crew/man/crew_random_name.Rd | 2 crew-0.8.0/crew/man/crew_retry.Rd | 2 crew-0.8.0/crew/man/crew_terminate_process.Rd |only crew-0.8.0/crew/man/crew_terminate_signal.Rd |only crew-0.8.0/crew/man/crew_worker.Rd | 9 crew-0.8.0/crew/tests/local.R | 2 crew-0.8.0/crew/tests/local/test-backlog_seconds_idle.R | 98 +++-- crew-0.8.0/crew/tests/local/test-backlog_tasks_max.R | 98 +++-- crew-0.8.0/crew/tests/local/test-cleanup.R |only crew-0.8.0/crew/tests/local/test-crew_clean.R |only crew-0.8.0/crew/tests/local/test-launch_max.R | 90 ++-- crew-0.8.0/crew/tests/local/test-launcher-system2.R | 207 +++++------ crew-0.8.0/crew/tests/local/test-map.R | 63 ++- crew-0.8.0/crew/tests/local/test-persistent-autoscale.R | 81 ++-- crew-0.8.0/crew/tests/local/test-persistent-group.R | 57 +-- crew-0.8.0/crew/tests/local/test-persistent.R | 55 +- crew-0.8.0/crew/tests/local/test-tls.R | 4 crew-0.8.0/crew/tests/local/test-transient-wait.R | 48 +- crew-0.8.0/crew/tests/local/test-transient.R | 95 ++--- crew-0.8.0/crew/tests/local/test-wait.R | 3 crew-0.8.0/crew/tests/testthat/test-crew_async.R | 9 crew-0.8.0/crew/tests/testthat/test-crew_client.R | 10 crew-0.8.0/crew/tests/testthat/test-crew_controller_local.R | 42 ++ crew-0.8.0/crew/tests/testthat/test-crew_launcher.R | 18 crew-0.8.0/crew/tests/testthat/test-crew_launcher_local.R | 125 ++++++ crew-0.8.0/crew/tests/testthat/test-crew_monitor_local.R |only crew-0.8.0/crew/tests/testthat/test-crew_retry.R | 2 crew-0.8.0/crew/tests/testthat/test-crew_terminate_process.R |only crew-0.8.0/crew/tests/testthat/test-crew_tls.R | 6 crew-0.8.0/crew/tests/testthat/test-plugins.R | 10 crew-0.8.0/crew/tests/testthat/test-utils_files.R | 5 crew-0.8.0/crew/tests/testthat/test-utils_logic.R | 7 crew-0.8.0/crew/vignettes/introduction.Rmd | 25 + crew-0.8.0/crew/vignettes/plugins.Rmd | 60 +++ crew-0.8.0/crew/vignettes/risks.Rmd | 10 78 files changed, 1610 insertions(+), 620 deletions(-)
Title: Copernicus Digital Elevation Models
Description: Copernicus Digital Elevation Model datasets (DEM) of 90 and 30 meters resolution using the 'awscli' command line tool. The Copernicus (DEM) is included in the Registry of Open Data on 'AWS (Amazon Web Services)' and represents the surface of the Earth including buildings, infrastructure and vegetation.
Author: Lampros Mouselimis [aut, cre]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between CopernicusDEM versions 1.0.2 dated 2022-02-06 and 1.0.3 dated 2024-01-09
CopernicusDEM-1.0.2/CopernicusDEM/inst/COPYRIGHTS |only CopernicusDEM-1.0.3/CopernicusDEM/DESCRIPTION | 12 CopernicusDEM-1.0.3/CopernicusDEM/MD5 | 22 CopernicusDEM-1.0.3/CopernicusDEM/NEWS.md | 6 CopernicusDEM-1.0.3/CopernicusDEM/R/utils.R | 2 CopernicusDEM-1.0.3/CopernicusDEM/README.md | 2 CopernicusDEM-1.0.3/CopernicusDEM/build/vignette.rds |binary CopernicusDEM-1.0.3/CopernicusDEM/inst/COPYRIGHTS.pdf |only CopernicusDEM-1.0.3/CopernicusDEM/inst/doc/Copernicus_Digital_Elevation_Models.R | 4 CopernicusDEM-1.0.3/CopernicusDEM/inst/doc/Copernicus_Digital_Elevation_Models.Rmd | 4 CopernicusDEM-1.0.3/CopernicusDEM/inst/doc/Copernicus_Digital_Elevation_Models.html | 625 ++++++---- CopernicusDEM-1.0.3/CopernicusDEM/man/aoi_geom_save_tif_matches.Rd | 2 CopernicusDEM-1.0.3/CopernicusDEM/vignettes/Copernicus_Digital_Elevation_Models.Rmd | 4 13 files changed, 468 insertions(+), 215 deletions(-)
More information about cancerscreening at CRAN
Permanent link
Title: R Interface for 'Tableau' Services
Description: Provides an R interface for interacting with the 'Tableau' Server.
It allows users to perform various operations such as publishing workbooks, refreshing data extracts,
and managing users using the 'Tableau' REST API (see <https://help.tableau.com/current/api/rest_api/en-us/REST/rest_api_ref.htm> for details). Additionally,
it includes functions to perform manipulations on local 'Tableau' workbooks.
Author: Tomer Iwan [aut, cre],
Ruben Korvinus [ctb],
VU Analytics [cph]
Maintainer: Tomer Iwan <t.iwan@vu.nl>
Diff between vvtableau versions 0.3.0 dated 2023-10-31 and 0.4.0 dated 2024-01-09
DESCRIPTION | 6 LICENSE | 4 MD5 | 208 ++++--- NAMESPACE | 89 +-- NEWS.md | 24 R/add_tags_to_view.R |only R/add_tags_to_workbook.R |only R/add_user_to_group.R |only R/add_user_to_site.R |only R/adjust_tableau_font_style.R | 126 ++-- R/adjust_tableau_size.R | 134 ++-- R/authenticate_PAT.R | 120 ++-- R/authenticate_server.R | 142 ++-- R/check_dashboard_names.R | 132 ++-- R/create_group.R |only R/delete_group.R |only R/download_tableau_crosstab_excel.R | 54 - R/download_tableau_data.R | 68 +- R/download_view_filtered.R | 162 ++--- R/download_workbook_server.R | 74 +- R/download_workbook_server_pdf.R | 70 +- R/download_workbook_server_powerpoint.R | 70 +- R/get_actions.R | 78 +- R/get_folders.R | 58 - R/get_groups_for_user.R |only R/get_hierarchy.R | 60 +- R/get_nodenames.R | 30 - R/get_parameters.R | 52 - R/get_revision.R | 36 - R/get_server_connected_applications.R | 74 +- R/get_server_datasources.R | 92 +-- R/get_server_groups.R | 90 +-- R/get_server_info.R | 86 +- R/get_server_jobs.R | 94 +-- R/get_server_location.R | 44 - R/get_server_projects.R | 94 +-- R/get_server_refresh_tasks.R | 78 +- R/get_server_schedules.R | 86 +- R/get_server_user_favorites.R | 100 +-- R/get_server_users.R | 92 +-- R/get_server_views.R | 98 +-- R/get_server_workbooks.R | 94 +-- R/get_table_assets.R |only R/get_tableau_data_source.R | 40 - R/get_users_in_group.R |only R/get_variable_folders.R | 48 - R/get_variables.R | 98 +-- R/get_workbook_id.R | 36 - R/get_workbook_tabs.R | 54 - R/make_rootnodes.R | 38 - R/query_user_on_site.R |only R/remove_user_from_group.R |only R/remove_user_from_site.R |only R/update_group.R |only R/update_user.R |only R/utils-pipe.R | 28 README.md | 88 +-- build/vignette.rds |binary inst/doc/download_filtered_views.R | 68 +- inst/doc/download_filtered_views.Rmd | 126 ++-- inst/doc/download_filtered_views.html | 812 +++++++++++++-------------- inst/doc/getting_started.R | 46 - inst/doc/getting_started.Rmd | 120 ++-- inst/doc/getting_started.html | 814 ++++++++++++++-------------- man/add_tags_to_view.Rd |only man/add_tags_to_workbook.Rd |only man/add_user_to_group.Rd |only man/add_user_to_site.Rd |only man/adjust_tableau_font_style.Rd | 54 - man/adjust_tableau_size.Rd | 108 +-- man/authenticate_server.Rd | 103 +-- man/check_dashboard_names.Rd | 78 +- man/create_group.Rd |only man/delete_group.Rd |only man/download_filtered_tableau_image.Rd | 113 ++- man/download_tableau_crosstab_excel.Rd | 107 ++- man/download_tableau_data.Rd | 97 +-- man/download_workbooks_server.Rd | 119 ++-- man/download_workbooks_server_pdf.Rd | 113 ++- man/download_workbooks_server_powerpoint.Rd | 113 ++- man/escape_special_chars.Rd | 34 - man/get_actions.Rd | 84 +- man/get_folders.Rd | 70 +- man/get_groups_for_user.Rd |only man/get_hierarchy.Rd | 70 +- man/get_nodenames.Rd | 70 +- man/get_parameter.Rd | 70 +- man/get_revision.Rd | 70 +- man/get_server_connected_apps.Rd | 99 +-- man/get_server_datasources.Rd | 113 ++- man/get_server_groups.Rd | 113 ++- man/get_server_info.Rd | 113 ++- man/get_server_jobs.Rd | 113 ++- man/get_server_location.Rd | 70 +- man/get_server_projects.Rd | 113 ++- man/get_server_refresh_tasks.Rd | 99 +-- man/get_server_schedules.Rd | 113 ++- man/get_server_user_favorites.Rd | 119 ++-- man/get_server_users.Rd | 113 ++- man/get_server_views.Rd | 119 ++-- man/get_server_workbooks.Rd | 113 ++- man/get_table_assets.Rd |only man/get_tableau_data_source.Rd | 84 +- man/get_users_in_group.Rd |only man/get_variable_folders.Rd | 70 +- man/get_variables.Rd | 70 +- man/get_workbook_id.Rd | 70 +- man/get_workbook_tabs.Rd | 70 +- man/make_rootnodes.Rd | 70 +- man/pipe.Rd | 40 - man/query_user_on_site.Rd |only man/remove_user_from_group.Rd |only man/remove_user_from_site.Rd |only man/row_to_name.Rd | 34 - man/row_to_query.Rd | 34 - man/update_group.Rd |only man/update_user.Rd |only vignettes/download_filtered_views.Rmd | 126 ++-- vignettes/getting_started.Rmd | 120 ++-- 119 files changed, 4642 insertions(+), 4364 deletions(-)
Title: Canonical Correlation for Survey Data
Description: Performs canonical correlation for survey data, including
multiple tests of significance for secondary canonical correlations.
A key feature of this package is that it incorporates survey data structure
directly in a novel test of significance via a sequence of simple linear
regression models on the canonical variates. See reference - Cruz-Cano,
Cohen, and Mead-Morse (2024) "Canonical Correlation Analysis of Survey data: the SurveyCC R package"
The R Journal under review.
Author: Raul Cruz-Cano [aut, cre]
Maintainer: Raul Cruz-Cano <raulcruz@iu.edu>
Diff between SurveyCC versions 0.1.0 dated 2023-09-08 and 0.1.1 dated 2024-01-09
DESCRIPTION | 17 ++++++----------- MD5 | 8 ++++---- NEWS.md | 4 +--- R/surveycc.R | 10 +++++----- man/surveycc.Rd | 6 +++--- 5 files changed, 19 insertions(+), 26 deletions(-)
Title: Spatial Sampling Design and Analysis
Description: A design-based approach to statistical inference, with a focus on spatial data. Spatially balanced samples are selected using the Generalized Random Tessellation Stratified (GRTS) algorithm. The GRTS algorithm can be applied to finite resources (point geometries) and infinite resources (linear / linestring and areal / polygon geometries) and flexibly accommodates a diverse set of sampling design features, including stratification, unequal inclusion probabilities, proportional (to size) inclusion probabilities, legacy (historical) sites, a minimum distance between sites, and two options for replacement sites (reverse hierarchical order and nearest neighbor). Data are analyzed using a wide range of analysis functions that perform categorical variable analysis, continuous variable analysis, attributable risk analysis, risk difference analysis, relative risk analysis, change analysis, and trend analysis. spsurvey can also be used to summarize objects, visualize objects, select samples that [...truncated...]
Author: Michael Dumelle [aut, cre] ,
Tom Kincaid [aut],
Tony Olsen [aut],
Marc Weber [aut],
Don Stevens [ctb],
Denis White [ctb]
Maintainer: Michael Dumelle <Dumelle.Michael@epa.gov>
Diff between spsurvey versions 5.5.0 dated 2023-05-16 and 5.5.1 dated 2024-01-09
DESCRIPTION | 8 MD5 | 35 NEWS.md | 10 R/contrast_analysis.R |only R/grts.R | 39 - R/grts_stratum.R | 5 R/irs.R | 36 R/irs_stratum.R | 5 R/power_dsgn.R | 2 R/revisit_dsgn.R | 5 build/vignette.rds |binary inst/doc/EDA.html | 1687 +++++++++++++++++++++++++++++++++++++++---- inst/doc/analysis.html | 1743 +++++++++++++++++++++++++++++++++++++++++---- inst/doc/sampling.html | 1812 ++++++++++++++++++++++++++++++++++++++++++----- inst/doc/start-here.html | 1645 ++++++++++++++++++++++++++++++++++++++---- man/adjwgtNR.Rd | 122 +-- man/grts.Rd | 2 man/irs.Rd | 2 man/power_dsgn.Rd | 2 19 files changed, 6374 insertions(+), 786 deletions(-)
Title: Concentration-Response Data Analysis using Curvep
Description: An R interface for processing concentration-response datasets using Curvep, a response noise filtering algorithm. The algorithm was described in the publications (Sedykh A et al. (2011) <doi:10.1289/ehp.1002476> and Sedykh A (2016) <doi:10.1007/978-1-4939-6346-1_14>). Other parametric fitting approaches (e.g., Hill equation) are also adopted for ease of comparison. 3-parameter Hill equation from 'tcpl' package (Filer D et al., <doi:10.1093/bioinformatics/btw680>) and 4-parameter Hill equation from Curve Class2 approach (Wang Y et al., <doi:10.2174/1875397301004010057>) are available. Also, methods for calculating the confidence interval around the activity metrics are also provided. The methods are based on the bootstrap approach to simulate the datasets (Hsieh J-H et al. <doi:10.1093/toxsci/kfy258>). The simulated datasets can be used to derive the baseline noise threshold in an assay endpoint. This threshold is critical in the toxicological studies to [...truncated...]
Author: Jui-Hua Hsieh [aut, cre] ,
Alexander Sedykh [aut],
Fred Parham [ctb],
Yuhong Wang [ctb],
Tongan Zhao [aut],
Ruili Huang [ctb]
Maintainer: Jui-Hua Hsieh <juihua.hsieh@gmail.com>
Diff between Rcurvep versions 1.2.1 dated 2022-08-25 and 1.3.1 dated 2024-01-09
Rcurvep-1.2.1/Rcurvep/man/Rcurvep.Rd |only Rcurvep-1.3.1/Rcurvep/DESCRIPTION | 36 ++- Rcurvep-1.3.1/Rcurvep/MD5 | 94 +++++-- Rcurvep-1.3.1/Rcurvep/NAMESPACE | 1 Rcurvep-1.3.1/Rcurvep/NEWS.md | 6 Rcurvep-1.3.1/Rcurvep/R/Rcurvep-package.R | 26 +- Rcurvep-1.3.1/Rcurvep/R/curveclass2_base.R |only Rcurvep-1.3.1/Rcurvep/R/init_java.R |only Rcurvep-1.3.1/Rcurvep/R/rcurvep_bmr.R | 2 Rcurvep-1.3.1/Rcurvep/R/rcurvep_checks.R | 45 +++ Rcurvep-1.3.1/Rcurvep/R/rcurvep_combirun.R | 4 Rcurvep-1.3.1/Rcurvep/R/rcurvep_plot.R | 5 Rcurvep-1.3.1/Rcurvep/R/rcurvep_summary.R | 2 Rcurvep-1.3.1/Rcurvep/R/tcplfit_hillbase.R | 67 ++++- Rcurvep-1.3.1/Rcurvep/R/tcplfit_obj.R | 3 Rcurvep-1.3.1/Rcurvep/R/tcplfit_onerun.R | 148 +++++++++--- Rcurvep-1.3.1/Rcurvep/README.md | 16 + Rcurvep-1.3.1/Rcurvep/build/partial.rdb |binary Rcurvep-1.3.1/Rcurvep/build/vignette.rds |binary Rcurvep-1.3.1/Rcurvep/inst/REFERENCES.bib | 38 ++- Rcurvep-1.3.1/Rcurvep/inst/doc/future_rcurvep.R |only Rcurvep-1.3.1/Rcurvep/inst/doc/future_rcurvep.Rmd |only Rcurvep-1.3.1/Rcurvep/inst/doc/future_rcurvep.html |only Rcurvep-1.3.1/Rcurvep/inst/doc/practical_rcurvep.R | 47 +++ Rcurvep-1.3.1/Rcurvep/inst/doc/practical_rcurvep.Rmd | 50 +++- Rcurvep-1.3.1/Rcurvep/inst/doc/practical_rcurvep.html | 96 +++++--- Rcurvep-1.3.1/Rcurvep/inst/java |only Rcurvep-1.3.1/Rcurvep/java |only Rcurvep-1.3.1/Rcurvep/man/Rcurvep-package.Rd |only Rcurvep-1.3.1/Rcurvep/man/cal_knee_point.Rd | 114 ++++----- Rcurvep-1.3.1/Rcurvep/man/combi_run_rcurvep.Rd | 2 Rcurvep-1.3.1/Rcurvep/man/estimate_dataset_bmr.Rd | 118 ++++----- Rcurvep-1.3.1/Rcurvep/man/fit_cc2_modl.Rd |only Rcurvep-1.3.1/Rcurvep/man/fit_modls.Rd | 191 +++++++++------- Rcurvep-1.3.1/Rcurvep/man/run_fit.Rd | 152 ++++++------ Rcurvep-1.3.1/Rcurvep/man/summarize_fit_output.Rd | 188 +++++++++------ Rcurvep-1.3.1/Rcurvep/tests/testthat/test-hillbase.R | 30 +- Rcurvep-1.3.1/Rcurvep/tests/testthat/test-hilldataset.R | 18 - Rcurvep-1.3.1/Rcurvep/tests/testthat/test-hillsum.R | 4 Rcurvep-1.3.1/Rcurvep/tests/testthat/test-mergeobj.R | 2 Rcurvep-1.3.1/Rcurvep/vignettes/future_rcurvep.Rmd |only Rcurvep-1.3.1/Rcurvep/vignettes/practical_rcurvep.Rmd | 50 +++- 42 files changed, 1026 insertions(+), 529 deletions(-)
Title: General Network (HTTP/FTP/...) Client Interface for R
Description: A wrapper for 'libcurl' <https://curl.se/libcurl/>
Provides functions to allow one to compose general HTTP requests
and provides convenient functions to fetch URIs, get & post
forms, etc. and process the results returned by the Web server.
This provides a great deal of control over the HTTP/FTP/...
connection and the form of the request while providing a
higher-level interface than is available just using R socket
connections. Additionally, the underlying implementation is
robust and extensive, supporting FTP/FTPS/TFTP (uploads and
downloads), SSL/HTTPS, telnet, dict, ldap, and also supports
cookies, redirects, authentication, etc.
Author: CRAN Team [ctb, cre] ,
Duncan Temple Lang [aut]
Maintainer: CRAN Team <CRAN@r-project.org>
Diff between RCurl versions 1.98-1.13 dated 2023-11-02 and 1.98-1.14 dated 2024-01-09
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- inst/doc/Changes.html | 6 ------ inst/doc/philosophy.html | 2 +- src/Makevars.ucrt | 3 +-- src/Makevars.win | 2 +- 6 files changed, 11 insertions(+), 18 deletions(-)
Title: Seamless R and C++ Integration
Description: The 'Rcpp' package provides R functions as well as C++ classes which
offer a seamless integration of R and C++. Many R data types and objects can be
mapped back and forth to C++ equivalents which facilitates both writing of new
code as well as easier integration of third-party libraries. Documentation
about 'Rcpp' is provided by several vignettes included in this package, via the
'Rcpp Gallery' site at <https://gallery.rcpp.org>, the paper by Eddelbuettel and
Francois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013,
<doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2018,
<doi:10.1080/00031305.2017.1375990>); see 'citation("Rcpp")' for details.
Author: Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey, Qiang Kou,
Nathan Russell, Inaki Ucar, Douglas Bates and John Chambers
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between Rcpp versions 1.0.11 dated 2023-07-06 and 1.0.12 dated 2024-01-09
ChangeLog | 99 +++++++++++ DESCRIPTION | 8 MD5 | 64 +++---- R/Attributes.R | 4 R/tools.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 45 ++++- inst/bib/Rcpp.bib | 105 ++++++------ inst/doc/Rcpp-FAQ.pdf |binary inst/doc/Rcpp-attributes.pdf |binary inst/doc/Rcpp-extending.pdf |binary inst/doc/Rcpp-introduction.pdf |binary inst/doc/Rcpp-jss-2011.pdf |binary inst/doc/Rcpp-libraries.pdf |binary inst/doc/Rcpp-modules.pdf |binary inst/doc/Rcpp-package.pdf |binary inst/doc/Rcpp-quickref.pdf |binary inst/doc/Rcpp-sugar.pdf |binary inst/include/Rcpp/config.h | 8 inst/include/Rcpp/iostream/Rstreambuf.h | 7 inst/include/Rcpp/print.h | 6 inst/include/Rcpp/vector/MatrixColumn.h | 2 inst/include/Rcpp/vector/MatrixRow.h | 16 - inst/include/Rcpp/vector/Vector.h | 2 inst/tinytest/testRcppInterfaceExporter/R/RcppExports.R | 2 inst/tinytest/testRcppInterfaceExporter/src/RcppExports.cpp | 7 man/getRcppVersion.Rd | 2 src/api.cpp | 48 ++--- src/attributes.cpp | 3 src/date.cpp | 1 vignettes/pdf/Rcpp-FAQ.pdf |binary vignettes/pdf/Rcpp-introduction.pdf |binary 33 files changed, 299 insertions(+), 132 deletions(-)
Title: QTL Analysis in Autopolyploid Bi-Parental F1 Populations
Description: Quantitative trait loci (QTL) analysis and exploration of meiotic patterns in
autopolyploid bi-parental F1 populations.
For all ploidy levels, identity-by-descent (IBD) probabilities can be estimated.
Significance thresholds, exploring QTL allele effects and visualising results are provided.
For more background and to reference the package see <doi:10.1093/bioinformatics/btab574>.
Author: Peter Bourke [aut, cre],
Christine Hackett [ctb],
Chris Maliepaard [ctb],
Geert van Geest [ctb],
Roeland Voorrips [ctb],
Johan Willemsen [ctb]
Maintainer: Peter Bourke <pbourkey@gmail.com>
Diff between polyqtlR versions 0.1.0 dated 2024-01-08 and 0.1.1 dated 2024-01-09
DESCRIPTION | 8 +- MD5 | 54 +++++++------- R/polyqtlR_functions.R | 100 +++++++++++++++++++------- man/BLUEs.pheno.Rd | 32 ++++---- man/GIC_4x.Rd | 32 ++++---- man/IBD_4x.Rd | 32 ++++---- man/PVE.Rd | 118 +++++++++++++++---------------- man/Phenotypes_4x.Rd | 32 ++++---- man/Rec_Data_4x.Rd | 32 ++++---- man/SNP_dosages.4x.Rd | 32 ++++---- man/check_cofactors.Rd | 4 - man/convert_mappoly_to_phased.maplist.Rd | 50 ++++++------- man/count_recombinations.Rd | 78 ++++++++++---------- man/findPeak.Rd | 46 ++++++------ man/findSupport.Rd | 50 ++++++------- man/impute_dosages.Rd | 102 +++++++++++++------------- man/maxL_IBD.Rd | 70 +++++++++--------- man/meiosis_report.Rd | 88 +++++++++++------------ man/mr.ls.Rd | 32 ++++---- man/phased_maplist.4x.Rd | 32 ++++---- man/plotRecLS.Rd | 82 ++++++++++----------- man/qtl_LODs.4x.Rd | 32 ++++---- man/segList_2x.Rd | 32 ++++---- man/segList_3x.Rd | 32 ++++---- man/segList_3x_24.Rd | 32 ++++---- man/segList_4x.Rd | 32 ++++---- man/segList_6x.Rd | 32 ++++---- man/visualisePairing.Rd | 112 ++++++++++++++--------------- 28 files changed, 731 insertions(+), 679 deletions(-)
Title: Translate Text
Description: The goal of the this package is to provide easy methods to
translate pieces of text. Functions send requests to translation services online.
Author: Tomer Iwan [aut, cre, cph]
Maintainer: Tomer Iwan <t.iwan@vu.nl>
Diff between polyglotr versions 1.3.0 dated 2023-12-06 and 1.3.1 dated 2024-01-09
DESCRIPTION | 6 LICENSE | 4 MD5 | 80 +- NAMESPACE | 30 - NEWS.md | 47 - R/batch_translate.R | 52 - R/google_get_supported_languages.R | 58 +- R/google_is_valid_language_code.R | 46 - R/google_supported_languages.R | 16 R/google_translate.R | 134 ++-- R/google_translate_file.R | 86 +- R/language_detect.R | 54 - R/linguee_external_sources.R | 84 +- R/linguee_translation_examples.R | 102 +-- R/linguee_word_translation.R | 92 +-- R/mymemory_translate.R | 64 +- R/utils-pipe.R | 28 build/vignette.rds |binary inst/doc/Linguee.R | 48 - inst/doc/Linguee.html | 837 ++++++++++++++-------------- inst/doc/Movie_Reviews.R | 58 +- inst/doc/Movie_Reviews.Rmd | 136 ++-- inst/doc/Movie_Reviews.html | 898 +++++++++++++++---------------- inst/doc/polyglotr.R | 50 - inst/doc/polyglotr.Rmd | 114 +-- inst/doc/polyglotr.html | 817 ++++++++++++++-------------- man/batch_translate.Rd | 52 - man/create_translation_table.Rd | 50 - man/google_get_supported_languages.Rd | 28 man/google_translate.Rd | 62 +- man/linguee_external_sources.Rd | 64 +- man/linguee_translation_examples.Rd | 86 +- man/linguee_word_translation.Rd | 76 +- man/mymemory_translate.Rd | 52 - man/pipe.Rd | 40 - tests/testthat.R | 20 tests/testthat/test-google_translate.R | 114 +-- tests/testthat/test-language_detect.R | 14 tests/testthat/test-mymemory_translate.R | 20 vignettes/Movie_Reviews.Rmd | 136 ++-- vignettes/polyglotr.Rmd | 114 +-- 41 files changed, 2434 insertions(+), 2435 deletions(-)
Title: Some Useful Functions for Statistics and Visualization
Description: Offers a range of utilities and functions for everyday programming tasks.
1.Data Manipulation. Such as grouping and merging, column splitting, and character expansion.
2.File Handling. Read and convert files in popular formats, including "blast", "diamond", "fasta", "gff", "gtf", and various image formats like "jpg", "png", "pdf", and "svg".
3.Plotting Assistance. Helpful utilities for generating color palettes, validating color formats, and adding transparency.
4.Statistical Analysis. Includes functions for pairwise comparisons and multiple testing corrections,
enabling perform statistical analyses with ease.
5.Graph Plotting, Provides efficient tools for creating doughnut plot and multi-layered doughnut plot;
Venn diagrams, including traditional Venn diagrams, upset plots, and flower plots;
Simplified functions for creating stacked bar plots, or a box plot with alphabets group for multiple comparison group.
Author: Chen Peng [aut, cre]
Maintainer: Chen Peng <pengchen2001@zju.edu.cn>
Diff between pcutils versions 0.1.0 dated 2023-06-13 and 0.2.0 dated 2024-01-09
DESCRIPTION | 38 MD5 | 129 + NAMESPACE | 58 R/l_tools.R | 1258 ++++++++---------- R/otutab.R | 52 R/pcutils-package.R | 63 R/plots.R | 2697 ++++++++++++++++++++++++++++++---------- R/project.R | 428 +++++- R/statistics.R | 969 +++++++++++--- build |only data/otutab.rda |binary inst |only man/DNA_plot.Rd |only man/Olympic_rings.Rd |only man/add_alpha.Rd | 4 man/add_analysis.Rd | 2 man/add_theme.Rd | 2 man/change_fac_lev.Rd | 6 man/china_map.Rd | 6 man/chunlian.Rd |only man/copy_df.Rd |only man/count2.Rd | 2 man/dabiao.Rd | 11 man/df2link.Rd |only man/download2.Rd |only man/explode.Rd | 2 man/generate_labels.Rd |only man/get_cols.Rd | 8 man/ggheatmap.Rd |only man/gghist.Rd |only man/gghuan.Rd | 21 man/gghuan2.Rd | 20 man/ggplot_lim.Rd |only man/give_you_a_rose.Rd |only man/group_box.Rd | 6 man/group_test.Rd |only man/gsub.data.frame.Rd |only man/guolv.Rd |only man/hebing.Rd | 4 man/how_to_set_options.Rd |only man/how_to_update_parameters.Rd | 2 man/how_to_use_parallel.Rd | 11 man/how_to_use_sbatch.Rd |only man/is.ggplot.color.Rd | 2 man/lm_coefficients.Rd |only man/make_gitbook.Rd |only man/multireg.Rd |only man/multitest.Rd | 4 man/my_circle_packing.Rd |only man/my_circo.Rd | 13 man/my_lm.Rd | 4 man/my_sunburst.Rd |only man/my_synteny.Rd |only man/my_treemap.Rd |only man/my_voronoi_treemap.Rd |only man/pcutils-package.Rd | 10 man/plot.coefficients.Rd |only man/plotgif.Rd | 2 man/plotpdf.Rd | 2 man/pre_number_str.Rd |only man/read.file.Rd | 6 man/read_fasta.Rd | 3 man/reinstall_my_packages.Rd |only man/remove.outliers.Rd | 2 man/rgb2code.Rd | 2 man/rm_low.Rd |only man/sample_map.Rd |only man/sanxian.Rd | 15 man/search_browse.Rd |only man/set_pcutils_config.Rd |only man/show_pcutils_config.Rd |only man/squash.Rd |only man/stackplot.Rd | 40 man/strsplit2.Rd | 2 man/t2.Rd |only man/tax_pie.Rd | 2 man/tax_wordcloud.Rd | 10 man/tidai.Rd |only man/trans.Rd |only man/translator.Rd |only man/triangp.Rd |only man/update_param.Rd | 2 man/venn.Rd | 8 man/write_fasta.Rd | 2 vignettes |only 85 files changed, 4242 insertions(+), 1688 deletions(-)
Title: Machine Learning in R - Next Generation
Description: Efficient, object-oriented programming on the
building blocks of machine learning. Provides 'R6' objects for tasks,
learners, resamplings, and measures. The package is geared towards
scalability and larger datasets by supporting parallelization and
out-of-memory data-backends like databases. While 'mlr3' focuses on
the core computational operations, add-on packages provide additional
functionality.
Author: Michel Lang [cre, aut] ,
Bernd Bischl [aut] ,
Jakob Richter [aut] ,
Patrick Schratz [aut] ,
Giuseppe Casalicchio [ctb] ,
Stefan Coors [ctb] ,
Quay Au [ctb] ,
Martin Binder [aut],
Florian Pfisterer [aut] ,
Raphael Sonabend [aut] ,
Lennart Schneider [c [...truncated...]
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3 versions 0.17.1 dated 2023-12-21 and 0.17.2 dated 2024-01-09
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ build/partial.rdb |binary tests/testthat/test_parallel.R | 2 ++ 5 files changed, 13 insertions(+), 7 deletions(-)
Title: Download and Visualize Essential Climate Change Data
Description: Provides easy access to essential climate change datasets to non-climate experts. Users can download the latest raw data from authoritative sources and view it via pre-defined 'ggplot2' charts. Datasets include atmospheric CO2, methane, emissions, instrumental and proxy temperature records, sea levels, Arctic/Antarctic sea-ice, Hurricanes, and Paleoclimate data. Sources include: NOAA Mauna Loa Laboratory <https://gml.noaa.gov/ccgg/trends/data.html>, Global Carbon Project <https://www.globalcarbonproject.org/carbonbudget/>, NASA GISTEMP <https://data.giss.nasa.gov/gistemp/>, National Snow and Sea Ice Data Center <https://nsidc.org/home>, CSIRO <https://research.csiro.au/slrwavescoast/sea-level/measurements-and-data/sea-level-data/>, NOAA Laboratory for Satellite Altimetry <https://www.star.nesdis.noaa.gov/socd/lsa/SeaLevelRise/> and HURDAT Atlantic Hurricane Database <https://www.aoml.noaa.gov/hrd/hurdat/Data_Storm.html>, Vostok Paleo carbon dio [...truncated...]
Author: Hernando Cortina [aut, cre]
Maintainer: Hernando Cortina <hch@alum.mit.edu>
Diff between hockeystick versions 0.8.2 dated 2023-10-20 and 0.8.3 dated 2024-01-09
DESCRIPTION | 6 +- MD5 | 40 +++++++-------- NEWS.md | 4 + R/daily_temp.R | 90 ++++++++++++++++++++-------------- R/globalvars.R | 2 README.md | 2 build/partial.rdb |binary inst/WORDLIST | 4 - man/figures/README-carbon-1.png |binary man/figures/README-dailytemp-1.png |binary man/figures/README-emissions-1.png |binary man/figures/README-emissions-2.png |binary man/figures/README-emissionsmap-1.png |binary man/figures/README-grid-1.png |binary man/figures/README-icecurves-1.png |binary man/figures/README-methane-1.png |binary man/figures/README-stripes-1.png |binary man/figures/README-stripes2-1.png |binary man/figures/README-temp-1.png |binary man/get_dailytemp.Rd | 10 +-- man/plot_dailytemp.Rd | 2 21 files changed, 92 insertions(+), 68 deletions(-)
Title: Nearest Neighbour Contingency Table Analysis
Description: Function to test spatial segregation and association based in contingency table analysis of nearest neighbour counts following Dixon (2002) <doi:10.1080/11956860.2002.11682700>. Some 'Fortran' code has been included to the original dixon2002() function of the 'ecespa' package to improve speed.
Author: Marcelino de la Cruz Rot and Philip M. Dixon
Maintainer: Marcelino de la Cruz Rot <marcelino.delacruz@urjc.es>
Diff between dixon versions 0.0-8 dated 2022-02-12 and 0.0-9 dated 2024-01-09
DESCRIPTION | 8 ++--- MD5 | 8 ++--- inst/CITATION | 75 +++++++++++++++++++++++++++++++++++--------------------- man/dixon.Rd | 2 - src/dixonloop.f | 71 +++++++++++++++++++++++++++++++---------------------- 5 files changed, 98 insertions(+), 66 deletions(-)
Title: Double/Debiased Machine Learning
Description: Estimate common causal parameters using double/debiased machine
learning as proposed by Chernozhukov et al. (2018) <doi:10.1111/ectj.12097>.
'ddml' simplifies estimation based on (short-)stacking as discussed in
Ahrens et al. (2024) <arXiv:2401.01645>, which leverages multiple base
learners to increase robustness to the underlying data generating process.
Author: Achim Ahrens [aut],
Christian B Hansen [aut],
Mark E Schaffer [aut],
Thomas Wiemann [aut, cre]
Maintainer: Thomas Wiemann <wiemann@uchicago.edu>
Diff between ddml versions 0.1.0 dated 2023-08-29 and 0.2.0 dated 2024-01-09
DESCRIPTION | 14 ++-- MD5 | 76 ++++++++++++----------- NAMESPACE | 3 NEWS.md | 14 +++- R/crosspred.R | 20 ++++-- R/ddml_ate.R | 53 +++++++++++----- R/ddml_att.R |only R/ddml_fpliv.R | 77 +++++++++++++++++++----- R/ddml_late.R | 115 ++++++++++++++++++++++++------------ R/ddml_pliv.R | 29 +++++++-- R/ddml_plm.R | 34 +++++++++- R/ensemble.R | 16 ++++- R/get_CEF.R | 3 R/ml_wrappers.R | 36 +++++++++++ R/shortstacking.R | 18 ++++- README.md | 13 +++- inst/doc/ddml.Rmd | 4 - inst/doc/ddml.html | 11 +-- man/crosspred.Rd | 7 ++ man/ddml_ate.Rd | 71 ++++++++++++++++++---- man/ddml_fpliv.Rd | 25 ++++++- man/ddml_late.Rd | 33 ++++++++-- man/ddml_pliv.Rd | 25 ++++++- man/ddml_plm.Rd | 19 +++++ man/mdl_glm.Rd |only man/mdl_glmnet.Rd | 1 man/mdl_ranger.Rd | 1 man/mdl_xgboost.Rd | 1 man/ols.Rd | 1 man/shortstacking.Rd | 9 ++ man/summary.ddml_ate.Rd | 10 ++- tests/testthat/test-crosspred.R | 29 +++++++++ tests/testthat/test-ddml_ate.R | 8 +- tests/testthat/test-ddml_att.R |only tests/testthat/test-ddml_fpliv.R | 24 +++++++ tests/testthat/test-ddml_late.R | 57 ++++++++++++++++- tests/testthat/test-ddml_pliv.R | 23 +++++++ tests/testthat/test-ddml_plm.R | 27 ++++++++ tests/testthat/test-ensemble.R | 44 +++++++++++++ tests/testthat/test-shortstacking.R |only vignettes/ddml.Rmd | 4 - 41 files changed, 767 insertions(+), 188 deletions(-)
Title: Detection and Attribution Analysis of Climate Change
Description: Conduct detection and attribution of climate change using methods including optimal fingerprinting via
generalized total least squares or estimating equation approach from Ma et al. (2023) <doi:10.1175/JCLI-D-22-0681.1>.
Provide shrinkage estimators for covariance matrix from Ledoit and Wolf (2004) <doi:10.1016/S0047-259X(03)00096-4>,
and Ledoit and Wolf (2017) <doi:10.2139/ssrn.2383361>.
Author: Yan Li [aut, cre],
Kun Chen [aut],
Jun Yan [aut]
Maintainer: Yan Li <yan.4.li@uconn.edu>
Diff between dacc versions 0.0-2 dated 2023-09-26 and 0.0-3 dated 2024-01-09
DESCRIPTION | 13 MD5 | 14 R/Covest.R | 15 R/fingerprint.R | 14 R/fingerprintCEE.R | 847 +++++++++++++++++++++++++------------------------- man/Covest.Rd | 16 man/fingerprint.Rd | 14 man/fingerprintCEE.Rd | 7 8 files changed, 483 insertions(+), 457 deletions(-)
Title: Bayesian Vector Heterogeneous Autoregressive Modeling
Description: Tools to research Bayesian Vector heterogeneous autoregressive (VHAR) model,
referring to Kim & Baek (2023) (<doi:10.1080/00949655.2023.2281644>).
'bvhar' can model Vector Autoregressive (VAR), VHAR, Bayesian VAR (BVAR), and Bayesian VHAR (BVHAR) models.
Author: Young Geun Kim [aut, cre, cph]
,
Changryong Baek [ctb]
Maintainer: Young Geun Kim <ygeunkimstat@gmail.com>
Diff between bvhar versions 1.1.0 dated 2023-12-18 and 1.2.0 dated 2024-01-09
DESCRIPTION | 12 +- MD5 | 59 +++++----- NEWS.md | 8 + R/RcppExports.R | 59 ++++++++++ R/bvar-sv.R | 21 --- R/bvhar-sv.R | 21 --- README.md | 20 +-- inst/doc/bvhar.html | 44 +++---- inst/doc/empirical-bayes.html | 12 +- inst/doc/forecasting.html | 2 inst/doc/shrinkage.R | 8 - inst/doc/shrinkage.Rmd | 8 - inst/doc/shrinkage.html | 228 ++++++++++++++++++++++----------------- man/bvhar-package.Rd | 2 man/figures/README-predfig-1.png |binary src/RcppExports.cpp | 71 ++++++++++++ src/bvhardraw.h | 2 src/bvharinterrupt.cpp |only src/bvharinterrupt.h |only src/bvharmisc.h | 14 -- src/bvharprogress.cpp |only src/bvharprogress.h |only src/estimate-hierarchical.cpp | 16 +- src/estimate-horseshoe.cpp | 17 +- src/estimate-ssvs.cpp | 14 +- src/estimate-sv.cpp | 35 +++-- src/forecast-bvar.cpp | 1 src/forecast-bvhar.cpp | 1 src/generate-distn.cpp | 170 +++++++++++++++++++++++++++++ src/mcmc-draw.cpp | 2 src/randsim.h |only src/simulate-data.cpp | 1 vignettes/shrinkage.Rmd | 8 - 33 files changed, 595 insertions(+), 261 deletions(-)
Title: Heller-Heller-Gorfine Tests of Independence and Equality of
Distributions
Description: Heller-Heller-Gorfine tests are a set of powerful statistical
tests of multivariate k-sample homogeneity and independence (Heller et. al., 2013, <doi:10.1093/biomet/ass070>). For the univariate
case, the package also offers implementations of the 'MinP DDP' and 'MinP ADP'
tests by Heller et. al. (2016), which are consistent against all continuous alternatives but are
distribution-free, and are thus much faster to apply.
Author: Barak Brill & Shachar Kaufman, based in part on an earlier
implementation by Ruth Heller and Yair Heller.
Maintainer: Barak Brill <barakbri@mail.tau.ac.il>
Diff between HHG versions 2.3.4 dated 2021-05-15 and 2.3.7 dated 2024-01-09
DESCRIPTION | 13 MD5 | 52 - NAMESPACE | 1 R/HHG_univariate.R | 14 build/vignette.rds |binary cleanup | 1 configure | 1374 +++++++++++++++++---------- configure.ac | 16 inst/doc/HHG.R | 30 inst/doc/HHG.html | 1417 ++++++++++++++++------------ man/Fast.independence.test.Rd | 2 man/Fast.independence.test.nulltable.Rd | 2 man/HHG-package.Rd | 6 man/hhg.univariate.ind.combined.test.Rd | 2 man/hhg.univariate.ind.nulltable.Rd | 3 man/hhg.univariate.ind.pvalue.Rd | 3 man/hhg.univariate.ind.stat.Rd | 3 man/hhg.univariate.ks.combined.test.Rd | 3 man/hhg.univariate.ks.nulltable.Rd | 3 man/hhg.univariate.ks.pvalue.Rd | 3 man/hhg.univariate.ks.stat.Rd | 2 man/hhg.univariate.nulltable.from.mstats.Rd | 7 src/HHG.cpp | 4 src/Makevars.in | 3 src/Makevars.win | 3 src/RcppExports.cpp | 7 src/rcpp_internals.cpp | 2 27 files changed, 1792 insertions(+), 1184 deletions(-)
Title: Cross-Platform Perl Based R Function to Create Excel 2003 (XLS)
and Excel 2007 (XLSX) Files
Description: Cross-platform Perl based R function to create Excel 2003 (XLS) and Excel 2007 (XLSX)
files from one or more data frames. Each data frame will be
written to a separate named worksheet in the Excel spreadsheet.
The worksheet name will be the name of the data frame it contains
or can be specified by the user.
Author: Marc Schwartz <marc_schwartz@me.com> and various authors for Perl modules listed in each .pm file.
Maintainer: Marc Schwartz <marc_schwartz@me.com>
Diff between WriteXLS versions 6.4.0 dated 2022-02-24 and 6.5.0 dated 2024-01-09
DESCRIPTION | 8 INSTALL | 16 MD5 | 95 R/WriteXLS.R | 2 R/testPerl.R | 2 inst/INSTALL | 16 inst/Perl/Excel/Writer/XLSX.pm | 65 inst/Perl/Excel/Writer/XLSX/Chart.pm | 10 inst/Perl/Excel/Writer/XLSX/Chart/Area.pm | 6 inst/Perl/Excel/Writer/XLSX/Chart/Bar.pm | 6 inst/Perl/Excel/Writer/XLSX/Chart/Column.pm | 6 inst/Perl/Excel/Writer/XLSX/Chart/Doughnut.pm | 6 inst/Perl/Excel/Writer/XLSX/Chart/Line.pm | 6 inst/Perl/Excel/Writer/XLSX/Chart/Pie.pm | 6 inst/Perl/Excel/Writer/XLSX/Chart/Radar.pm | 6 inst/Perl/Excel/Writer/XLSX/Chart/Scatter.pm | 6 inst/Perl/Excel/Writer/XLSX/Chart/Stock.pm | 6 inst/Perl/Excel/Writer/XLSX/Chartsheet.pm | 6 inst/Perl/Excel/Writer/XLSX/Drawing.pm | 37 inst/Perl/Excel/Writer/XLSX/Examples.pm | 875 +++- inst/Perl/Excel/Writer/XLSX/Format.pm | 11 inst/Perl/Excel/Writer/XLSX/Package/App.pm | 6 inst/Perl/Excel/Writer/XLSX/Package/Comments.pm | 6 inst/Perl/Excel/Writer/XLSX/Package/ContentTypes.pm | 6 inst/Perl/Excel/Writer/XLSX/Package/Core.pm | 6 inst/Perl/Excel/Writer/XLSX/Package/Custom.pm | 6 inst/Perl/Excel/Writer/XLSX/Package/Metadata.pm | 6 inst/Perl/Excel/Writer/XLSX/Package/Packager.pm | 12 inst/Perl/Excel/Writer/XLSX/Package/Relationships.pm | 6 inst/Perl/Excel/Writer/XLSX/Package/SharedStrings.pm | 6 inst/Perl/Excel/Writer/XLSX/Package/Styles.pm | 25 inst/Perl/Excel/Writer/XLSX/Package/Table.pm | 6 inst/Perl/Excel/Writer/XLSX/Package/Theme.pm | 6 inst/Perl/Excel/Writer/XLSX/Package/VML.pm | 21 inst/Perl/Excel/Writer/XLSX/Package/XMLwriter.pm | 6 inst/Perl/Excel/Writer/XLSX/Shape.pm | 6 inst/Perl/Excel/Writer/XLSX/Utility.pm | 48 inst/Perl/Excel/Writer/XLSX/Workbook.pm | 39 inst/Perl/Excel/Writer/XLSX/Worksheet.pm | 703 +++ inst/Perl/File/Basename.pm | 10 inst/Perl/Getopt/Long |only inst/Perl/Getopt/Long.pm | 242 - inst/Perl/OLE/Storage_Lite.pm | 3382 +++++++++---------- inst/Perl/Parse/RecDescent.pm | 1363 +++++-- inst/Perl/Text/CSV.pm | 179 - inst/Perl/Text/CSV_PP.pm | 415 +- inst/Perl/WriteXLS.pl | 2 inst/Perl/WriteXLSX.pl | 2 man/WriteXLS.Rd | 2 49 files changed, 4843 insertions(+), 2871 deletions(-)
Title: Data Exchange Between R and 'LabKey' Server
Description: The 'LabKey' client library for R makes it easy for R users to
load live data from a 'LabKey' Server, <https://www.labkey.com/>,
into the R environment for analysis, provided users have permissions
to read the data. It also enables R users to insert, update, and
delete records stored on a 'LabKey' Server, provided they have appropriate
permissions to do so.
Author: Peter Hussey
Maintainer: Cory Nathe <cnathe@labkey.com>
Diff between Rlabkey versions 3.1.0 dated 2023-12-06 and 3.2.0 dated 2024-01-09
DESCRIPTION | 8 ++++---- MD5 | 26 ++++++++++++++------------ NAMESPACE | 2 +- NEWS | 4 ++++ R/labkey.deleteRows.R | 15 +-------------- R/labkey.importRows.R | 17 ++--------------- R/labkey.insertRows.R | 16 +--------------- R/labkey.moveRows.R |only R/labkey.updateRows.R | 15 +-------------- R/makeDF.R | 24 +++++++++++++++++++++++- man/Rlabkey-package.Rd | 4 ++-- man/labkey.deleteRows.Rd | 2 +- man/labkey.insertRows.Rd | 2 +- man/labkey.moveRows.Rd |only man/labkey.updateRows.Rd | 2 +- 15 files changed, 56 insertions(+), 81 deletions(-)
Title: Solver for Delay Differential Equations
Description: Functions for solving systems of delay differential equations by
interfacing with numerical routines written by Simon N. Wood, including
contributions from Benjamin J. Cairns. These numerical routines first
appeared in Simon Wood's 'solv95' program. This package includes a vignette
and a complete user's guide. 'PBSddesolve' originally appeared on CRAN under
the name 'ddesolve'. That version is no longer supported. The current name
emphasizes a close association with other 'PBS' packages, particularly
'PBSmodelling'.
Author: Alex Couture-Beil [aut],
Jon T. Schnute [aut],
Rowan Haigh [aut, cre],
Simon N. Wood [aut],
Benjamin J. Cairns [aut],
Nicholas Boers [ctb],
Nick Fisch [ctb]
Maintainer: Rowan Haigh <rowan.haigh@dfo-mpo.gc.ca>
Diff between PBSddesolve versions 1.13.3 dated 2023-02-01 and 1.13.4 dated 2024-01-09
DESCRIPTION | 16 +++++++++------- MD5 | 12 +++++++----- inst/doc/ChangeLog.txt | 11 ++++++++++- man/dde.Rd | 4 ++-- man/dot-PBSddeEnv.Rd |only man/dot-onClosePBSddeExamples.Rd |only src/PBSddesolve.c | 2 +- src/ddeq.c | 2 +- 8 files changed, 30 insertions(+), 17 deletions(-)
Title: Paws Low-Level Amazon Web Services API
Description: Functions for making low-level API requests to Amazon Web Services
<https://aws.amazon.com>. The functions handle building, signing, and
sending requests, and receiving responses. They are designed to help build
higher-level interfaces to individual services, such as Simple Storage
Service (S3).
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.common versions 0.6.4 dated 2023-11-11 and 0.7.0 dated 2024-01-09
DESCRIPTION | 6 - MD5 | 21 ++-- NEWS.md | 8 + R/client.R | 44 ++++++---- R/config.R | 7 - R/credential_providers.R | 53 ++++++++---- R/custom_s3.R | 51 ++++++++++++ R/paginate.R | 157 ++++++++++++++++++++++--------------- man/paginate.Rd | 18 +++- tests/testthat/test_client.R | 54 ++++++++++++ tests/testthat/test_handlers_sse.R |only tests/testthat/test_paginate.R | 100 +++++++++++++++++++++++ 12 files changed, 405 insertions(+), 114 deletions(-)
Title: Grammar Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Geometries: geom_table(), geom_plot() and geom_grob() add insets to
plots using native data coordinates, while geom_table_npc(), geom_plot_npc()
and geom_grob_npc() do the same using "npc" coordinates through new
aesthetics "npcx" and "npcy". Statistics: select observations based on 2D
density. Positions: radial nudging away from a center point and nudging away
from a line or curve; combined stacking and nudging; combined dodging and
nudging.
Author: Pedro J. Aphalo [aut, cre] ,
Kamil Slowikowski [ctb] ,
Michal Krassowski [ctb] ,
Daniel Sabanes Bove [ctb],
Stella Banjo [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggpp versions 0.5.5 dated 2023-11-07 and 0.5.6 dated 2024-01-09
DESCRIPTION | 8 MD5 | 101 ++++-- NEWS.md | 8 R/position-nudge-center.R | 172 ++++++++--- R/position-nudge-dodge.R | 37 ++ R/position-nudge-dodge2.R | 33 +- R/position-nudge-jitter.R | 34 +- R/position-nudge-line.R | 37 +- R/position-nudge-stack.R | 67 +++- R/position-nudge-to.R | 62 +++- R/stat-dens2d-filter.r | 8 inst/doc/grammar-extensions.R | 5 inst/doc/grammar-extensions.Rmd | 166 +++++++---- inst/doc/grammar-extensions.html | 235 ++++++++++------ inst/doc/nudge-examples.Rmd | 14 inst/doc/nudge-examples.html | 27 + man/position_dodgenudge.Rd | 13 man/position_jitternudge.Rd | 8 man/position_nudge_center.Rd | 35 -- man/position_nudge_keep.Rd |only man/position_nudge_line.Rd | 4 man/position_nudge_to.Rd | 41 ++ man/position_stacknudge.Rd | 5 tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/position-nudge/dodge-nudge1.svg | 4 tests/testthat/_snaps/position-nudge/dodge-nudge2.svg | 4 tests/testthat/_snaps/position-nudge/dodge-nudge3.svg | 8 tests/testthat/_snaps/position-nudge/dodge-nudge4.svg | 10 tests/testthat/_snaps/position-nudge/dodge-nudge5.svg |only tests/testthat/_snaps/position-nudge/dodge-nudge6.svg |only tests/testthat/_snaps/position-nudge/fill-nudge1.svg |only tests/testthat/_snaps/position-nudge/fill-nudge2.svg |only tests/testthat/_snaps/position-nudge/fill-nudge3.svg |only tests/testthat/_snaps/position-nudge/fill-nudge4.svg |only tests/testthat/_snaps/position-nudge/fill-nudge5.svg |only tests/testthat/_snaps/position-nudge/fill-nudge6.svg |only tests/testthat/_snaps/position-nudge/nudge-center1b.svg |only tests/testthat/_snaps/position-nudge/nudge-center1c.svg |only tests/testthat/_snaps/position-nudge/nudge-keep5.svg |only tests/testthat/_snaps/position-nudge/nudge-keep6.svg |only tests/testthat/_snaps/position-nudge/nudge-keep7.svg |only tests/testthat/_snaps/position-nudge/nudge-line1.svg | 4 tests/testthat/_snaps/position-nudge/nudge-line2.svg | 6 tests/testthat/_snaps/position-nudge/nudge-line3a.svg |only tests/testthat/_snaps/position-nudge/nudge-to1a.svg |only tests/testthat/_snaps/position-nudge/stack-nudge5.svg |only tests/testthat/_snaps/position-nudge/stack-nudge6.svg |only tests/testthat/_snaps/position_dodge2nudge |only tests/testthat/_snaps/position_dodgenudge |only tests/testthat/test-geom_x_margin_grob.R | 8 tests/testthat/test-geom_y_margin_grob.R | 5 tests/testthat/test-position-nudge.R | 134 ++++++++- tests/testthat/test-position_dodge2nudge.R | 75 +++++ tests/testthat/test-position_dodge_keep.R | 19 + tests/testthat/test-position_dodgenudge.R |only tests/testthat/test-position_fillnudge.R | 19 + tests/testthat/test-position_jitternudge.R | 18 + tests/testthat/test-stat_dens2d_filter_g.R | 14 vignettes/grammar-extensions.Rmd | 166 +++++++---- vignettes/nudge-examples.Rmd | 14 60 files changed, 1207 insertions(+), 421 deletions(-)
Title: Easily Apply Formats to Data
Description: Contains a set of functions that can be used to apply
formats to data frames or vectors. The package aims to provide
functionality similar to that of SAS® formats. Formats are assigned to
the format attribute on data frame columns. Then when the fdata()
function is called, a new data frame is created with the column data
formatted as specified. The package also contains a value() function
to create a user-defined format, similar to a SAS® user-defined format.
Author: David Bosak
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between fmtr versions 1.6.2 dated 2023-11-09 and 1.6.3 dated 2024-01-09
DESCRIPTION | 8 - MD5 | 139 ++++++++++--------- NEWS.md | 4 R/descriptions.R | 14 + R/fapply.R | 38 +++-- R/fattr.R | 2 R/fcat.R | 44 +++++- R/fdata.R | 2 R/flist.R | 14 + R/fmt.R | 15 +- R/fmtr.R | 5 R/formats.R | 21 ++ R/helpers.R | 10 - R/justification.R | 27 +++ R/widths.R | 20 ++ build/vignette.rds |binary inst/doc/fmtr-convenience.html | 4 inst/doc/fmtr-example1.R | 14 - inst/doc/fmtr-example1.Rmd | 27 +-- inst/doc/fmtr-example1.html | 291 ++++++++++++++++++++--------------------- inst/doc/fmtr-example2.R |only inst/doc/fmtr-example2.Rmd |only inst/doc/fmtr-example2.html |only inst/doc/fmtr-fapply.html | 4 inst/doc/fmtr-fapply2.R |only inst/doc/fmtr-fapply2.Rmd |only inst/doc/fmtr-fapply2.html |only inst/doc/fmtr-faq.Rmd | 17 +- inst/doc/fmtr-faq.html | 20 +- inst/doc/fmtr-fcat.Rmd | 2 inst/doc/fmtr-fcat.html | 6 inst/doc/fmtr-fdata.html | 4 inst/doc/fmtr-helpers.html | 4 inst/doc/fmtr.Rmd | 3 inst/doc/fmtr.html | 3 man/FormattingStrings.Rd | 5 man/as.data.frame.fcat.Rd | 6 man/as.data.frame.fmt_lst.Rd | 11 + man/as.fcat.Rd | 2 man/as.fcat.data.frame.Rd | 11 + man/as.fcat.tbl_df.Rd | 11 + man/as.flist.Rd | 3 man/as.flist.data.frame.Rd | 3 man/as.flist.fcat.Rd | 3 man/as.flist.tbl_df.Rd | 3 man/condition.Rd | 1 man/descriptions.Rd | 14 + man/fapply.Rd | 38 +++-- man/fattr-set.Rd | 1 man/fattr.Rd | 1 man/fcat.Rd | 6 man/fdata.Rd | 2 man/flist.Rd | 3 man/fmt_mean_sd.Rd | 2 man/fmt_median.Rd | 2 man/fmt_n.Rd | 2 man/fmt_quantile_range.Rd | 2 man/fmt_range.Rd | 2 man/formats.Rd | 21 ++ man/images/example2.png |only man/is.fcat.Rd | 5 man/is.format.Rd | 4 man/justification.Rd | 27 +++ man/labels.fmt.Rd | 4 man/print.fcat.Rd | 4 man/read.fcat.Rd | 5 man/value.Rd | 6 man/widths.Rd | 20 ++ man/write.fcat.Rd | 5 vignettes/fmtr-example1.Rmd | 27 +-- vignettes/fmtr-example2.Rmd |only vignettes/fmtr-fapply2.Rmd |only vignettes/fmtr-faq.Rmd | 17 +- vignettes/fmtr-fcat.Rmd | 2 vignettes/fmtr.Rmd | 3 75 files changed, 658 insertions(+), 388 deletions(-)
Title: Tools for the Analysis of Epidemiological Data
Description: Tools for the analysis of epidemiological and surveillance data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, computation of confidence intervals around incidence risk and incidence rate estimates and sample size calculations for cross-sectional, case-control and cohort studies. Surveillance tools include functions to calculate an appropriate sample size for 1- and 2-stage representative freedom surveys, functions to estimate surveillance system sensitivity and functions to support scenario tree modelling analyses.
Author: Mark Stevenson [aut, cre] ,
Evan Sergeant [aut],
Cord Heuer [ctb],
Telmo Nunes [ctb],
Cord Heuer [ctb],
Jonathon Marshall [ctb],
Javier Sanchez [ctb],
Ron Thornton [ctb],
Jeno Reiczigel [ctb],
Jim Robison-Cox [ctb],
Paola Sebastiani [ctb],
Peter Soly [...truncated...]
Maintainer: Mark Stevenson <mark.stevenson1@unimelb.edu.au>
Diff between epiR versions 2.0.66 dated 2023-11-20 and 2.0.67 dated 2024-01-09
DESCRIPTION | 8 MD5 | 29 - NEWS |only build/vignette.rds |binary inst/doc/epiR_descriptive.R | 24 + inst/doc/epiR_descriptive.Rmd | 50 ++- inst/doc/epiR_descriptive.html | 442 +++++++++++++++-------------- inst/doc/epiR_measures_of_association.R | 54 ++- inst/doc/epiR_measures_of_association.Rmd | 35 +- inst/doc/epiR_measures_of_association.html | 139 +++++---- inst/doc/epiR_sample_size.R | 2 inst/doc/epiR_sample_size.html | 4 inst/doc/epiR_surveillance.R | 2 inst/doc/epiR_surveillance.html | 14 vignettes/epiR_descriptive.Rmd | 50 ++- vignettes/epiR_measures_of_association.Rmd | 35 +- 16 files changed, 522 insertions(+), 366 deletions(-)
Title: Compositional Data Analysis
Description: Provides functions for the consistent analysis of compositional
data (e.g. portions of substances) and positive numbers (e.g. concentrations)
in the way proposed by J. Aitchison and V. Pawlowsky-Glahn.
Author: K. Gerald van den Boogaart <boogaart@hzdr.de>,
Raimon Tolosana-Delgado, Matevz Bren
Maintainer: K. Gerald van den Boogaart <support@boogaart.de>
Diff between compositions versions 2.0-6 dated 2023-04-13 and 2.0-7 dated 2024-01-09
compositions-2.0-6/compositions/tests/CheckGeometry.Rout |only compositions-2.0-6/compositions/tests/RobustTest.Rout |only compositions-2.0-6/compositions/tests/TestMissing.Rout |only compositions-2.0-6/compositions/tests/TestSimp.Rout |only compositions-2.0-6/compositions/tests/missings.Rout |only compositions-2.0-7/compositions/ChangeLog | 3 compositions-2.0-7/compositions/DESCRIPTION | 8 compositions-2.0-7/compositions/MD5 | 62 - compositions-2.0-7/compositions/build/partial.rdb |binary compositions-2.0-7/compositions/build/vignette.rds |binary compositions-2.0-7/compositions/inst/doc/UsingCompositions.pdf |binary compositions-2.0-7/compositions/inst/doc/compositions_v2.R | 16 compositions-2.0-7/compositions/inst/doc/compositions_v2.html | 495 +++++++--- compositions-2.0-7/compositions/man/CompLinModCo.Rd | 2 compositions-2.0-7/compositions/man/Sediments.Rd | 2 compositions-2.0-7/compositions/man/SerumProtein.Rd | 2 compositions-2.0-7/compositions/man/Supervisor.Rd | 2 compositions-2.0-7/compositions/man/WhiteCells.Rd | 2 compositions-2.0-7/compositions/man/codadendrogram.Rd | 2 compositions-2.0-7/compositions/man/compmiss.Rd | 4 compositions-2.0-7/compositions/man/ellipses.Rd | 2 compositions-2.0-7/compositions/man/mixRead.Rd | 2 compositions-2.0-7/compositions/man/outlierplot.Rd | 4 compositions-2.0-7/compositions/man/outliers.Rd | 2 compositions-2.0-7/compositions/man/print.Rd | 2 compositions-2.0-7/compositions/man/raitchison.Rd | 2 compositions-2.0-7/compositions/man/readgeoeas.Rd | 10 compositions-2.0-7/compositions/man/robustness.Rd | 2 compositions-2.0-7/compositions/man/simplemissingplot.Rd | 2 compositions-2.0-7/compositions/man/variograms.Rd | 2 compositions-2.0-7/compositions/tests/CheckGeometry.Rout.save |only compositions-2.0-7/compositions/tests/RobustTest.Rout.save |only compositions-2.0-7/compositions/tests/Rplots.pdf |binary compositions-2.0-7/compositions/tests/TestMissing.R | 1 compositions-2.0-7/compositions/tests/TestMissing.Rout.save |only compositions-2.0-7/compositions/tests/TestSimp.Rout.save |only compositions-2.0-7/compositions/tests/missings.Rout.save |only 37 files changed, 462 insertions(+), 169 deletions(-)
Title: The 'shiny' App for Test Analysis and Visualization
Description: This application enables exploratory factor analysis, confirmatory factor analysis, classical measurement theory analysis, unidimensional item response theory, multidimensional item response theory, and continuous item response model analysis, through the 'shiny' interactive interface. It also facilitates the visualization of the results. Users can easily download the analysis results from the interactive interface. Additionally, users can download a concise report about items and test quality on the interactive interface.
Author: Youxiang Jiang [cre, aut] ,
Hongbo Wen [ctb, ths]
Maintainer: Youxiang Jiang <jiangyouxiang34@163.com>
Diff between TestAnaAPP versions 0.1.4 dated 2023-11-20 and 0.1.5 dated 2024-01-09
DESCRIPTION | 6 - MD5 | 10 +- R/server.R | 169 +++++++++++++++++++++++++------------- R/ui.R | 22 +++- inst/rmd/IRT_Analysis_Report.Rmd | 5 + inst/rmd/MIRT_Analysis_Report.Rmd | 13 ++ 6 files changed, 154 insertions(+), 71 deletions(-)
Title: Download and Tidy Data from the Reserve Bank of Australia
Description: Download up-to-date data from the Reserve Bank of Australia
in a tidy data frame. Package includes functions to download current and
historical statistical tables
(<https://www.rba.gov.au/statistics/tables/>) and forecasts
(<https://www.rba.gov.au/publications/smp/forecasts-archive.html>). Data
includes a broad range of Australian macroeconomic and financial time
series.
Author: Matt Cowgill [aut, cre] ,
Angus Moore [ctb]
Maintainer: Matt Cowgill <mattcowgill@gmail.com>
Diff between readrba versions 0.1.6 dated 2023-12-15 and 0.1.7 dated 2024-01-09
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 3 +++ R/sysdata.rda |binary inst/doc/readrba.html | 4 ++-- 5 files changed, 12 insertions(+), 9 deletions(-)
Title: Graph/Network Analysis Based on L1 Centrality
Description: Analyze graph/network data using L1 centrality. Functions for deriving global and local L1 centrality and L1 centrality-based neighborhoods of vertices are provided. Routines for visual inspection of a graph/network are also provided.
Author: Seungwoo Kang [aut, cre] ,
Hee-Seok Oh [aut]
Maintainer: Seungwoo Kang <kangsw0401@snu.ac.kr>
Diff between L1centrality versions 0.0.2 dated 2023-12-18 and 0.0.3 dated 2024-01-09
DESCRIPTION | 6 +++--- MD5 | 30 +++++++++++++++--------------- NEWS.md | 10 ++++++++++ R/L1cent.R | 34 +++++++++++----------------------- R/L1centEDGE.R | 7 +++---- R/L1centLOC.R | 10 ++++++++-- R/L1centMDS.R | 26 +++----------------------- R/L1centNB.R | 2 +- R/L1centrality-package.R | 2 +- R/validate.R | 4 +++- man/L1cent.Rd | 17 +++++++++-------- man/L1centEDGE.Rd | 10 +++++----- man/L1centLOC.Rd | 10 +++++----- man/L1centMDS.Rd | 2 +- man/L1centNB.Rd | 12 ++++++------ man/L1centrality-package.Rd | 2 +- 16 files changed, 85 insertions(+), 99 deletions(-)
Title: 'caret' Applications for Spatial-Temporal Models
Description: Supporting functionality to run 'caret' with spatial or spatial-temporal data. 'caret' is a frequently used package for model training and prediction using machine learning. CAST includes functions to improve spatial or spatial-temporal modelling tasks using 'caret'. It includes the newly suggested 'Nearest neighbor distance matching' cross-validation to estimate the performance of spatial prediction models and allows for spatial variable selection to selects suitable predictor variables in view to their contribution to the spatial model performance. CAST further includes functionality to estimate the (spatial) area of applicability of prediction models. Methods are described in Meyer et al. (2018) <doi:10.1016/j.envsoft.2017.12.001>; Meyer et al. (2019) <doi:10.1016/j.ecolmodel.2019.108815>; Meyer and Pebesma (2021) <doi:10.1111/2041-210X.13650>; Milà et al. (2022) <doi:10.1111/2041-210X.13851>; Meyer and Pebesma (2022) <doi:10.1038/s41467-022-29838-9>; L [...truncated...]
Author: Hanna Meyer [cre, aut],
Carles Mila [aut],
Marvin Ludwig [aut],
Jan Linnenbrink [aut],
Philipp Otto [ctb],
Chris Reudenbach [ctb],
Thomas Nauss [ctb],
Edzer Pebesma [ctb]
Maintainer: Hanna Meyer <hanna.meyer@uni-muenster.de>
Diff between CAST versions 0.8.1 dated 2023-05-30 and 0.9.0 dated 2024-01-09
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Title: Linkage Map Construction using the MSTmap Algorithm
Description: Functions for Accurate and Speedy linkage map construction, manipulation and diagnosis of Doubled Haploid, Backcross and Recombinant Inbred 'R/qtl' objects. This includes extremely fast linkage map clustering and optimal marker ordering using 'MSTmap' (see Wu et al.,2008).
Author: Julian Taylor <julian.taylor@adelaide.edu.au>, David Butler
<dbutler@uow.edu.au>.
Maintainer: Julian Taylor <julian.taylor@adelaide.edu.au>
Diff between ASMap versions 1.0-6 dated 2023-07-16 and 1.0-7 dated 2024-01-09
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ build/vignette.rds |binary inst/doc/asmapvignette.pdf |binary src/MSTOpt.cpp | 4 ++-- src/genetic_map_DH.cpp | 8 ++++---- src/linkage_group_DH.cpp | 2 +- 7 files changed, 16 insertions(+), 16 deletions(-)