Title: Drug Repurposing in Cancer via a Subpathway Crosstalk Network
Description: A systematic biology tool was developed to repurpose drugs via a subpathway crosstalk network. The operation modes include 1) calculating centrality scores of SPs in the context of gene expression data to reflect the influence of SP crosstalk, 2) evaluating drug-disease reverse association based on disease- and drug-induced SPs weighted by the SP crosstalk, 3) identifying cancer candidate drugs through perturbation analysis. There are also several functions used to visualize the results.
Author: Junwei Han [aut, cre, cph],
Jiashuo Wu [aut]
Maintainer: Junwei Han <hanjunwei1981@163.com>
Diff between DRviaSPCN versions 0.1.3 dated 2023-09-25 and 0.1.4 dated 2024-01-12
DRviaSPCN-0.1.3/DRviaSPCN/data/datalist |only DRviaSPCN-0.1.4/DRviaSPCN/DESCRIPTION | 11 + DRviaSPCN-0.1.4/DRviaSPCN/MD5 | 25 ++-- DRviaSPCN-0.1.4/DRviaSPCN/NAMESPACE | 3 DRviaSPCN-0.1.4/DRviaSPCN/R/Disease2SPheatmap.R | 5 DRviaSPCN-0.1.4/DRviaSPCN/R/Drug2SPheatmap.R | 6 - DRviaSPCN-0.1.4/DRviaSPCN/R/GetExample.R | 6 - DRviaSPCN-0.1.4/DRviaSPCN/R/getMolecularFm.R | 5 DRviaSPCN-0.1.4/DRviaSPCN/build/vignette.rds |binary DRviaSPCN-0.1.4/DRviaSPCN/data/envData.rda |binary DRviaSPCN-0.1.4/DRviaSPCN/inst/doc/DRviaSPCN.R | 18 +-- DRviaSPCN-0.1.4/DRviaSPCN/inst/doc/DRviaSPCN.Rmd | 19 +-- DRviaSPCN-0.1.4/DRviaSPCN/inst/doc/DRviaSPCN.html | 127 +++++++++++----------- DRviaSPCN-0.1.4/DRviaSPCN/vignettes/DRviaSPCN.Rmd | 19 +-- 14 files changed, 133 insertions(+), 111 deletions(-)
Title: Easily Access and Maintain Time-Based Versioned Data
(Slowly-Changing-Dimension)
Description: A collection of functions that enable easy access and updating of a database of data over time.
More specifically, the package facilitates type-2 history for data-warehouses and provides a number
of Quality of life improvements for working on SQL databases with R.
For reference see Ralph Kimball and Margy Ross (2013, ISBN 9781118530801).
Author: Rasmus Skytte Randloev [aut, cre]
,
Marcus Munch Gruenewald [aut] ,
Statens Serum Institut [cph, fnd]
Maintainer: Rasmus Skytte Randloev <rske@ssi.dk>
Diff between SCDB versions 0.2.1 dated 2023-11-30 and 0.3 dated 2024-01-12
DESCRIPTION | 27 MD5 | 73 - NAMESPACE | 27 NEWS.md | 22 R/Logger.R | 29 R/SCDB-package.R | 19 R/connection.R | 325 +++--- R/create_table.R | 11 R/db_joins.R | 230 ++-- R/db_manipulating_functions.R | 63 - R/digest_to_checksum.R | 176 +-- R/get_schema.R | 52 - R/get_table.R | 166 +++ R/update_snapshot.R | 42 inst/WORDLIST | 8 inst/doc/basic-principles.Rmd | 278 ++--- inst/doc/basic-principles.html | 288 ++---- man/SCDB-package.Rd | 9 man/create_table.Rd | 64 - man/db_timestamp.Rd | 64 - man/figures/SCDB-logo.svg | 1138 ++++++++++++------------ man/figures/ssi-logo.svg |only man/get_connection.Rd | 126 +- man/get_schema.Rd | 23 man/get_table.Rd | 5 man/get_tables.Rd | 63 - man/joins.Rd | 204 ++-- man/table_exists.Rd | 4 man/update_snapshot.Rd | 118 +- tests/testthat/setup.R | 43 tests/testthat/test-connection.R | 148 +-- tests/testthat/test-create_table.R | 40 tests/testthat/test-db_joins.R | 241 ++--- tests/testthat/test-db_manipulating_functions.R | 366 +++---- tests/testthat/test-db_timestamp.R | 40 tests/testthat/test-update_snapshot.R | 67 + vignettes/basic-principles.Rmd | 278 ++--- vignettes/references.bib | 16 38 files changed, 2613 insertions(+), 2280 deletions(-)
Title: Regression-Based Causal Mediation Analysis with Interaction and
Effect Modification Terms
Description: This is an extension of the regression-based causal mediation analysis first proposed by Valeri and VanderWeele (2013) <doi:10.1037/a0031034> and Valeri and VanderWeele (2015) <doi:10.1097/EDE.0000000000000253>). It supports including effect measure modification by covariates(treatment-covariate and mediator-covariate product terms in mediator and outcome regression models) as proposed by Li et al (2023) <doi:10.1097/EDE.0000000000001643>. It also accommodates the original 'SAS' macro and 'PROC CAUSALMED' procedure in 'SAS' when there is no effect measure modification. Linear and logistic models are supported for the mediator model. Linear, logistic, loglinear, Poisson, negative binomial, Cox, and accelerated failure time (exponential and Weibull) models are supported for the outcome model.
Author: Kazuki Yoshida [ctb, aut] ,
Yi Li [cre, aut] ,
Maya Mathur [ctb]
Maintainer: Yi Li <yi.li10@mail.mcgill.ca>
Diff between regmedint versions 1.0.0 dated 2022-04-06 and 1.0.1 dated 2024-01-12
DESCRIPTION | 23 MD5 | 158 NEWS.md | 8 build/vignette.rds |binary inst/doc/vig_01_introduction.R | 2 inst/doc/vig_01_introduction.html | 260 - inst/doc/vig_02_formulas.R | 2 inst/doc/vig_02_formulas.html | 187 - inst/doc/vig_03_bootstrap.R | 2 inst/doc/vig_03_bootstrap.html | 390 +- inst/doc/vig_04_mi.R | 2 inst/doc/vig_04_mi.html | 419 +- inst/doc/vig_05_emm.R | 2 inst/doc/vig_05_emm.html | 368 +- inst/doc/vig_06_delta_boot.R | 30 inst/doc/vig_06_delta_boot.html | 1626 ++-------- tests/reference_results/sas-mreg_linear_yreg_logistic_int_f_caco_f_ncvar0.r.txt | 4 tests/reference_results/sas-mreg_linear_yreg_logistic_int_f_caco_f_ncvar3.r.txt | 4 tests/reference_results/sas-mreg_linear_yreg_logistic_int_f_caco_t_ncvar0.r.txt | 6 tests/reference_results/sas-mreg_linear_yreg_logistic_int_f_caco_t_ncvar3.r.txt | 4 tests/reference_results/sas-mreg_linear_yreg_logistic_int_t_caco_f_ncvar0.r.txt | 4 tests/reference_results/sas-mreg_linear_yreg_logistic_int_t_caco_f_ncvar3.r.txt | 4 tests/reference_results/sas-mreg_linear_yreg_logistic_int_t_caco_t_ncvar0.r.txt | 6 tests/reference_results/sas-mreg_linear_yreg_logistic_int_t_caco_t_ncvar3.r.txt | 4 tests/reference_results/sas-mreg_linear_yreg_loglinear_int_f_caco_f_ncvar0.r.txt | 4 tests/reference_results/sas-mreg_linear_yreg_loglinear_int_f_caco_f_ncvar3.r.txt | 4 tests/reference_results/sas-mreg_linear_yreg_loglinear_int_f_caco_t_ncvar0.r.txt | 6 tests/reference_results/sas-mreg_linear_yreg_loglinear_int_f_caco_t_ncvar3.r.txt | 4 tests/reference_results/sas-mreg_linear_yreg_loglinear_int_t_caco_f_ncvar0.r.txt | 4 tests/reference_results/sas-mreg_linear_yreg_loglinear_int_t_caco_f_ncvar3.r.txt | 4 tests/reference_results/sas-mreg_linear_yreg_loglinear_int_t_caco_t_ncvar0.r.txt | 6 tests/reference_results/sas-mreg_linear_yreg_loglinear_int_t_caco_t_ncvar3.r.txt | 4 tests/reference_results/sas-mreg_linear_yreg_negbin_int_f_caco_f_ncvar0.r.txt | 4 tests/reference_results/sas-mreg_linear_yreg_negbin_int_f_caco_f_ncvar3.r.txt | 4 tests/reference_results/sas-mreg_linear_yreg_negbin_int_t_caco_f_ncvar0.r.txt | 4 tests/reference_results/sas-mreg_linear_yreg_negbin_int_t_caco_f_ncvar3.r.txt | 4 tests/reference_results/sas-mreg_linear_yreg_poisson_int_f_caco_f_ncvar0.r.txt | 4 tests/reference_results/sas-mreg_linear_yreg_poisson_int_f_caco_f_ncvar3.r.txt | 4 tests/reference_results/sas-mreg_linear_yreg_poisson_int_t_caco_f_ncvar0.r.txt | 4 tests/reference_results/sas-mreg_linear_yreg_poisson_int_t_caco_f_ncvar3.r.txt | 4 tests/reference_results/sas-mreg_logistic_yreg_linear_int_f_caco_f_ncvar0.r.txt | 4 tests/reference_results/sas-mreg_logistic_yreg_linear_int_f_caco_f_ncvar3.r.txt | 4 tests/reference_results/sas-mreg_logistic_yreg_linear_int_t_caco_f_ncvar0.r.txt | 4 tests/reference_results/sas-mreg_logistic_yreg_linear_int_t_caco_f_ncvar3.r.txt | 4 tests/reference_results/sas-mreg_logistic_yreg_logistic_int_f_caco_f_ncvar0.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_logistic_int_f_caco_f_ncvar3.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_logistic_int_f_caco_t_ncvar0.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_logistic_int_f_caco_t_ncvar3.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_logistic_int_t_caco_f_ncvar0.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_logistic_int_t_caco_f_ncvar3.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_logistic_int_t_caco_t_ncvar0.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_logistic_int_t_caco_t_ncvar3.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_loglinear_int_f_caco_f_ncvar0.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_loglinear_int_f_caco_f_ncvar3.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_loglinear_int_f_caco_t_ncvar0.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_loglinear_int_f_caco_t_ncvar3.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_loglinear_int_t_caco_f_ncvar0.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_loglinear_int_t_caco_f_ncvar3.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_loglinear_int_t_caco_t_ncvar0.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_loglinear_int_t_caco_t_ncvar3.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_negbin_int_f_caco_f_ncvar0.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_negbin_int_f_caco_f_ncvar3.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_negbin_int_t_caco_f_ncvar0.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_negbin_int_t_caco_f_ncvar3.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_poisson_int_f_caco_f_ncvar0.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_poisson_int_f_caco_f_ncvar3.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_poisson_int_t_caco_f_ncvar0.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_poisson_int_t_caco_f_ncvar3.r.txt | 8 tests/reference_results/sas-mreg_logistic_yreg_survAFT_exp_int_f_caco_f_ncvar0.r.txt | 4 tests/reference_results/sas-mreg_logistic_yreg_survAFT_exp_int_f_caco_f_ncvar3.r.txt | 4 tests/reference_results/sas-mreg_logistic_yreg_survAFT_exp_int_t_caco_f_ncvar0.r.txt | 4 tests/reference_results/sas-mreg_logistic_yreg_survAFT_exp_int_t_caco_f_ncvar3.r.txt | 4 tests/reference_results/sas-mreg_logistic_yreg_survAFT_weibull_int_f_caco_f_ncvar0.r.txt | 4 tests/reference_results/sas-mreg_logistic_yreg_survAFT_weibull_int_f_caco_f_ncvar3.r.txt | 4 tests/reference_results/sas-mreg_logistic_yreg_survAFT_weibull_int_t_caco_f_ncvar0.r.txt | 4 tests/reference_results/sas-mreg_logistic_yreg_survAFT_weibull_int_t_caco_f_ncvar3.r.txt | 4 tests/reference_results/sas-mreg_logistic_yreg_survCox_int_f_caco_f_ncvar0.r.txt | 4 tests/reference_results/sas-mreg_logistic_yreg_survCox_int_f_caco_f_ncvar3.r.txt | 4 tests/reference_results/sas-mreg_logistic_yreg_survCox_int_t_caco_f_ncvar0.r.txt | 4 tests/reference_results/sas-mreg_logistic_yreg_survCox_int_t_caco_f_ncvar3.r.txt | 4 80 files changed, 1343 insertions(+), 2496 deletions(-)
Title: Miscellaneous Functions 'T. Yanagida'
Description: Miscellaneous functions for (1) data management (e.g., grand-mean and group-mean centering, coding variables and reverse coding items, scale and cluster scores, reading and writing Excel and SPSS files), (2) descriptive statistics (e.g., frequency table, cross tabulation, effect size measures), (3) missing data (e.g., descriptive statistics for missing data, missing data pattern, Little's test of Missing Completely at Random, and auxiliary variable analysis), (4) multilevel data (e.g., multilevel descriptive statistics, within-group and between-group correlation matrix, multilevel confirmatory factor analysis, level-specific fit indices, cross-level measurement equivalence evaluation, multilevel composite reliability, and multilevel R-squared measures), (5) item analysis (e.g., confirmatory factor analysis, coefficient alpha and omega, between-group and longitudinal measurement equivalence evaluation), and (6) statistical analysis (e.g., confidence intervals, collinearity and residual [...truncated...]
Author: Takuya Yanagida [aut, cre]
Maintainer: Takuya Yanagida <takuya.yanagida@univie.ac.at>
Diff between misty versions 0.5.4 dated 2023-11-14 and 0.6.0 dated 2024-01-12
misty-0.5.4/misty/R/ci.median.R |only misty-0.5.4/misty/R/ci.sd.R |only misty-0.5.4/misty/R/cor.cont.R |only misty-0.5.4/misty/R/cor.cramer.R |only misty-0.5.4/misty/R/cor.phi.R |only misty-0.5.4/misty/R/cor.poly.R |only misty-0.5.4/misty/R/dummy.c.R |only misty-0.5.4/misty/R/eta.sq.R |only misty-0.5.4/misty/R/kurtosis.R |only misty-0.5.4/misty/R/na.as.R |only misty-0.5.4/misty/R/script.close.R |only misty-0.5.4/misty/R/script.save.R |only misty-0.5.4/misty/R/shift.R |only misty-0.5.4/misty/man/ci.median.Rd |only misty-0.5.4/misty/man/ci.sd.Rd |only misty-0.5.4/misty/man/cor.cont.Rd |only misty-0.5.4/misty/man/cor.cramer.Rd |only misty-0.5.4/misty/man/cor.phi.Rd |only misty-0.5.4/misty/man/cor.poly.Rd |only misty-0.5.4/misty/man/dummy.c.Rd |only misty-0.5.4/misty/man/eta.sq.Rd |only misty-0.5.4/misty/man/kurtosis.Rd |only misty-0.5.4/misty/man/na.as.Rd |only misty-0.5.4/misty/man/script.close.Rd |only misty-0.5.4/misty/man/script.save.Rd |only misty-0.5.4/misty/man/shift.Rd |only misty-0.6.0/misty/DESCRIPTION | 16 misty-0.6.0/misty/MD5 | 374 ++++---- misty-0.6.0/misty/NAMESPACE | 19 misty-0.6.0/misty/NEWS.md | 63 + misty-0.6.0/misty/R/aov.b.R | 120 +- misty-0.6.0/misty/R/aov.w.R | 152 ++- misty-0.6.0/misty/R/as.na.R | 367 ++++++-- misty-0.6.0/misty/R/center.R | 691 +++++++++++---- misty-0.6.0/misty/R/check.collin.R | 80 + misty-0.6.0/misty/R/check.outlier.R | 25 misty-0.6.0/misty/R/check.resid.R | 16 misty-0.6.0/misty/R/chr.gsub.R | 4 misty-0.6.0/misty/R/chr.omit.R | 35 misty-0.6.0/misty/R/chr.trim.R | 8 misty-0.6.0/misty/R/ci.mean.R | 672 ++++++++++++--- misty-0.6.0/misty/R/ci.mean.diff.R | 185 ++-- misty-0.6.0/misty/R/ci.mean.w.R | 178 ++-- misty-0.6.0/misty/R/ci.prop.R | 305 ++++-- misty-0.6.0/misty/R/ci.prop.diff.R | 270 +++--- misty-0.6.0/misty/R/ci.var.R | 713 +++++++++++++--- misty-0.6.0/misty/R/cluster.scores.R | 207 +++- misty-0.6.0/misty/R/coding.R |only misty-0.6.0/misty/R/cohens.d.R | 380 +++++--- misty-0.6.0/misty/R/cor.matrix.R | 734 ++++++---------- misty-0.6.0/misty/R/crosstab.R | 255 +++-- misty-0.6.0/misty/R/descript.R | 245 +++-- misty-0.6.0/misty/R/df.duplicated.R | 208 ++-- misty-0.6.0/misty/R/df.merge.R | 60 - misty-0.6.0/misty/R/df.move.R |only misty-0.6.0/misty/R/df.rbind.R | 44 - misty-0.6.0/misty/R/df.rename.R | 29 misty-0.6.0/misty/R/df.sort.R | 33 misty-0.6.0/misty/R/df.subset.R |only misty-0.6.0/misty/R/dominance.R | 73 + misty-0.6.0/misty/R/dominance.manual.R | 89 +- misty-0.6.0/misty/R/effsize.R |only misty-0.6.0/misty/R/freq.R | 343 ++++--- misty-0.6.0/misty/R/indirect.R | 175 ++- misty-0.6.0/misty/R/item.alpha.R | 247 +++-- misty-0.6.0/misty/R/item.cfa.R | 241 +++-- misty-0.6.0/misty/R/item.invar.R | 201 +++- misty-0.6.0/misty/R/item.omega.R | 661 +++------------ misty-0.6.0/misty/R/item.reverse.R | 194 ++-- misty-0.6.0/misty/R/item.scores.R | 200 ++-- misty-0.6.0/misty/R/lagged.R |only misty-0.6.0/misty/R/libraries.R | 24 misty-0.6.0/misty/R/mplus.lca.R | 34 misty-0.6.0/misty/R/multilevel.cfa.R | 238 +++-- misty-0.6.0/misty/R/multilevel.cor.R | 192 ++-- misty-0.6.0/misty/R/multilevel.descript.R | 989 +++++++++++++++++----- misty-0.6.0/misty/R/multilevel.fit.R | 70 + misty-0.6.0/misty/R/multilevel.icc.R | 634 ++++++++------ misty-0.6.0/misty/R/multilevel.indirect.R | 54 + misty-0.6.0/misty/R/multilevel.invar.R | 243 +++-- misty-0.6.0/misty/R/multilevel.omega.R | 261 +++-- misty-0.6.0/misty/R/multilevel.r2.R | 79 + misty-0.6.0/misty/R/multilevel.r2.manual.R | 65 + misty-0.6.0/misty/R/na.auxiliary.R | 142 ++- misty-0.6.0/misty/R/na.coverage.R | 173 ++- misty-0.6.0/misty/R/na.descript.R | 626 ++++++++++++-- misty-0.6.0/misty/R/na.indicator.R | 74 + misty-0.6.0/misty/R/na.pattern.R | 168 ++- misty-0.6.0/misty/R/na.prop.R | 110 +- misty-0.6.0/misty/R/na.test.R | 141 ++- misty-0.6.0/misty/R/print.misty.object.R | 1144 ++++++++++++-------------- misty-0.6.0/misty/R/read.dta.R |only misty-0.6.0/misty/R/read.mplus.R | 12 misty-0.6.0/misty/R/read.sav.R | 104 +- misty-0.6.0/misty/R/read.xlsx.R | 95 +- misty-0.6.0/misty/R/rec.R | 255 +++-- misty-0.6.0/misty/R/restart.R | 2 misty-0.6.0/misty/R/result.lca.R | 85 + misty-0.6.0/misty/R/robust.coef.R | 91 +- misty-0.6.0/misty/R/run.mplus.R | 35 misty-0.6.0/misty/R/rwg.lindell.R | 199 ++-- misty-0.6.0/misty/R/script.copy.R |only misty-0.6.0/misty/R/script.new.R | 35 misty-0.6.0/misty/R/script.open.R | 160 +++ misty-0.6.0/misty/R/setsource.R | 35 misty-0.6.0/misty/R/size.cor.R | 75 + misty-0.6.0/misty/R/size.mean.R | 90 +- misty-0.6.0/misty/R/size.prop.R | 100 +- misty-0.6.0/misty/R/skewness.R | 198 +++- misty-0.6.0/misty/R/std.coef.R | 70 + misty-0.6.0/misty/R/test.levene.R | 84 + misty-0.6.0/misty/R/test.t.R | 195 ++-- misty-0.6.0/misty/R/test.welch.R | 123 +- misty-0.6.0/misty/R/test.z.R | 201 ++-- misty-0.6.0/misty/R/utils.R |only misty-0.6.0/misty/R/write.dta.R |only misty-0.6.0/misty/R/write.mplus.R | 31 misty-0.6.0/misty/R/write.result.R | 509 +++++++---- misty-0.6.0/misty/R/write.sav.R | 83 - misty-0.6.0/misty/R/write.xlsx.R | 22 misty-0.6.0/misty/man/aov.b.Rd | 39 misty-0.6.0/misty/man/aov.w.Rd | 99 +- misty-0.6.0/misty/man/as.na.Rd | 175 ++- misty-0.6.0/misty/man/center.Rd | 308 ++++--- misty-0.6.0/misty/man/check.collin.Rd | 49 - misty-0.6.0/misty/man/check.outlier.Rd | 15 misty-0.6.0/misty/man/check.resid.Rd | 14 misty-0.6.0/misty/man/chr.gsub.Rd | 4 misty-0.6.0/misty/man/chr.omit.Rd | 22 misty-0.6.0/misty/man/chr.trim.Rd | 10 misty-0.6.0/misty/man/ci.mean.Rd | 167 ++- misty-0.6.0/misty/man/ci.mean.diff.Rd | 82 + misty-0.6.0/misty/man/ci.mean.w.Rd | 48 - misty-0.6.0/misty/man/ci.prop.Rd | 121 +- misty-0.6.0/misty/man/ci.prop.diff.Rd | 67 - misty-0.6.0/misty/man/ci.var.Rd | 155 ++- misty-0.6.0/misty/man/cluster.scores.Rd | 85 + misty-0.6.0/misty/man/coding.Rd |only misty-0.6.0/misty/man/cohens.d.Rd | 105 +- misty-0.6.0/misty/man/cor.matrix.Rd | 156 ++- misty-0.6.0/misty/man/crosstab.Rd | 142 +-- misty-0.6.0/misty/man/descript.Rd | 138 +-- misty-0.6.0/misty/man/df.duplicated.Rd | 104 +- misty-0.6.0/misty/man/df.merge.Rd | 226 ++--- misty-0.6.0/misty/man/df.move.Rd |only misty-0.6.0/misty/man/df.rbind.Rd | 7 misty-0.6.0/misty/man/df.rename.Rd | 12 misty-0.6.0/misty/man/df.sort.Rd | 110 +- misty-0.6.0/misty/man/df.subset.Rd |only misty-0.6.0/misty/man/dominance.Rd | 40 misty-0.6.0/misty/man/dominance.manual.Rd | 59 - 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misty-0.6.0/misty/man/test.z.Rd | 97 +- misty-0.6.0/misty/man/write.dta.Rd |only misty-0.6.0/misty/man/write.mplus.Rd | 9 misty-0.6.0/misty/man/write.result.Rd | 109 -- misty-0.6.0/misty/man/write.sav.Rd | 17 misty-0.6.0/misty/man/write.xlsx.Rd | 9 misty-0.6.0/misty/src |only 209 files changed, 14689 insertions(+), 8463 deletions(-)
Title: Generate Walk Bouts from GPS and Accelerometry Data
Description: Process GPS and accelerometry data to generate walk bouts. A walk bout is a period of activity with accelerometer movement matching the patterns of walking with corresponding GPS measurements that confirm travel. The inputs of the 'walkboutr' package are individual-level accelerometry and GPS data. The outputs of the model are walk bouts with corresponding times, duration, and summary statistics on the sample population, which collapse all personally identifying information. These bouts can be used to measure walking both as an outcome of a change to the built environment or as a predictor of health outcomes such as a cardioprotective behavior. Kang B, Moudon AV, Hurvitz PM, Saelens BE (2017) <doi:10.1016/j.trd.2017.09.026>.
Author: Lauren Blair Wilner [aut, cre, cph]
,
Stephen J Mooney [aut]
Maintainer: Lauren Blair Wilner <wilnerl@uw.edu>
Diff between walkboutr versions 0.4.0 dated 2023-10-13 and 0.5.0 dated 2024-01-12
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 2 ++ README.md | 46 +++++++++++++++++++++++----------------------- build/partial.rdb |binary build/vignette.rds |binary 6 files changed, 33 insertions(+), 31 deletions(-)
Title: Provides a 'PySpark' Back-End for the 'sparklyr' Package
Description: It enables 'sparklyr' to integrate with 'Spark Connect', and
'Databricks Connect' by providing a wrapper over the 'PySpark' 'python'
library.
Author: Edgar Ruiz [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Edgar Ruiz <edgar@posit.co>
Diff between pysparklyr versions 0.1.2 dated 2023-12-05 and 0.1.3 dated 2024-01-12
pysparklyr-0.1.2/pysparklyr/tests/testthat/test-spark-connect.R |only pysparklyr-0.1.3/pysparklyr/DESCRIPTION | 8 pysparklyr-0.1.3/pysparklyr/MD5 | 74 +- pysparklyr-0.1.3/pysparklyr/NAMESPACE | 14 pysparklyr-0.1.3/pysparklyr/NEWS.md | 34 + pysparklyr-0.1.3/pysparklyr/R/data-read.R | 3 pysparklyr-0.1.3/pysparklyr/R/data-write.R | 50 + pysparklyr-0.1.3/pysparklyr/R/databricks-utils.R | 117 ++- pysparklyr-0.1.3/pysparklyr/R/deploy.R |only pysparklyr-0.1.3/pysparklyr/R/ide-snippet.R | 17 pysparklyr-0.1.3/pysparklyr/R/ml-utils.R | 10 pysparklyr-0.1.3/pysparklyr/R/package.R | 16 pysparklyr-0.1.3/pysparklyr/R/python-import-check.R | 55 + pysparklyr-0.1.3/pysparklyr/R/python-install.R | 303 ++++++---- pysparklyr-0.1.3/pysparklyr/R/python-requirements.R |only pysparklyr-0.1.3/pysparklyr/R/python-use-envname.R | 100 +-- pysparklyr-0.1.3/pysparklyr/R/sparklyr-sdf.R |only pysparklyr-0.1.3/pysparklyr/R/sparklyr-spark-connect.R | 144 +++- pysparklyr-0.1.3/pysparklyr/R/utils.R | 11 pysparklyr-0.1.3/pysparklyr/inst/rstudio/shinycon/app.R | 151 +++- pysparklyr-0.1.3/pysparklyr/man/deploy_databricks.Rd |only pysparklyr-0.1.3/pysparklyr/man/install_pyspark.Rd | 14 pysparklyr-0.1.3/pysparklyr/man/requirements_write.Rd |only pysparklyr-0.1.3/pysparklyr/tests/testthat/_snaps/data-write.md | 45 + pysparklyr-0.1.3/pysparklyr/tests/testthat/_snaps/dplyr.md | 12 pysparklyr-0.1.3/pysparklyr/tests/testthat/_snaps/ml-utils.md |only pysparklyr-0.1.3/pysparklyr/tests/testthat/_snaps/python-install.md | 129 ++++ pysparklyr-0.1.3/pysparklyr/tests/testthat/_snaps/sparklyr-sdf.md |only pysparklyr-0.1.3/pysparklyr/tests/testthat/helper-databricks.R |only pysparklyr-0.1.3/pysparklyr/tests/testthat/helper-init.R | 15 pysparklyr-0.1.3/pysparklyr/tests/testthat/helper-utils.R | 56 + pysparklyr-0.1.3/pysparklyr/tests/testthat/requirements.txt |only pysparklyr-0.1.3/pysparklyr/tests/testthat/test-aaa-spark-connect.R | 2 pysparklyr-0.1.3/pysparklyr/tests/testthat/test-connections-pane.R | 12 pysparklyr-0.1.3/pysparklyr/tests/testthat/test-data-write.R | 52 + pysparklyr-0.1.3/pysparklyr/tests/testthat/test-databricks-utils.R | 54 + pysparklyr-0.1.3/pysparklyr/tests/testthat/test-deploy.R |only pysparklyr-0.1.3/pysparklyr/tests/testthat/test-dplyr.R | 60 + pysparklyr-0.1.3/pysparklyr/tests/testthat/test-ide-snippet.R |only pysparklyr-0.1.3/pysparklyr/tests/testthat/test-ml-utils.R |only pysparklyr-0.1.3/pysparklyr/tests/testthat/test-python-install.R | 176 +++++ pysparklyr-0.1.3/pysparklyr/tests/testthat/test-python-requirements.R |only pysparklyr-0.1.3/pysparklyr/tests/testthat/test-python-use-envname.R | 100 +++ pysparklyr-0.1.3/pysparklyr/tests/testthat/test-sparklyr-sdf.R |only pysparklyr-0.1.3/pysparklyr/tests/testthat/test-sparklyr-spark-connect.R |only pysparklyr-0.1.3/pysparklyr/tests/testthat/test-utils.R |only pysparklyr-0.1.3/pysparklyr/tests/testthat/test-zzz-spark-connect.R |only 47 files changed, 1442 insertions(+), 392 deletions(-)
Title: Fast Hierarchical Clustering Routines for R and 'Python'
Description: This is a two-in-one package which provides interfaces to
both R and 'Python'. It implements fast hierarchical, agglomerative
clustering routines. Part of the functionality is designed as drop-in
replacement for existing routines: linkage() in the 'SciPy' package
'scipy.cluster.hierarchy', hclust() in R's 'stats' package, and the
'flashClust' package. It provides the same functionality with the
benefit of a much faster implementation. Moreover, there are
memory-saving routines for clustering of vector data, which go beyond
what the existing packages provide. For information on how to install
the 'Python' files, see the file INSTALL in the source distribution.
Based on the present package, Christoph Dalitz also wrote a pure 'C++'
interface to 'fastcluster':
<https://lionel.kr.hs-niederrhein.de/~dalitz/data/hclust/>.
Author: Daniel Muellner [aut, cph, cre],
Google Inc. [cph]
Maintainer: Daniel Muellner <daniel@danifold.net>
Diff between fastcluster versions 1.2.2 dated 2021-05-24 and 1.2.6 dated 2024-01-12
fastcluster-1.2.2/fastcluster/NEWS |only fastcluster-1.2.6/fastcluster/DESCRIPTION | 14 +- fastcluster-1.2.6/fastcluster/INSTALL | 4 fastcluster-1.2.6/fastcluster/LICENSE | 4 fastcluster-1.2.6/fastcluster/MD5 | 47 +++++----- fastcluster-1.2.6/fastcluster/NEWS.md |only fastcluster-1.2.6/fastcluster/R/fastcluster.R | 4 fastcluster-1.2.6/fastcluster/README | 8 - fastcluster-1.2.6/fastcluster/build/partial.rdb |only fastcluster-1.2.6/fastcluster/build/vignette.rds |binary fastcluster-1.2.6/fastcluster/inst/CITATION | 14 -- fastcluster-1.2.6/fastcluster/inst/doc/fastcluster.Rtex | 8 - fastcluster-1.2.6/fastcluster/inst/doc/fastcluster.pdf |binary fastcluster-1.2.6/fastcluster/man/fastcluster.Rd | 6 - fastcluster-1.2.6/fastcluster/man/hclust.Rd | 2 fastcluster-1.2.6/fastcluster/man/hclust.vector.Rd | 2 fastcluster-1.2.6/fastcluster/src/fastcluster.cpp | 17 ++- fastcluster-1.2.6/fastcluster/src/fastcluster_R.cpp | 8 - fastcluster-1.2.6/fastcluster/src/python/fastcluster.py | 6 - fastcluster-1.2.6/fastcluster/src/python/fastcluster_python.cpp | 4 fastcluster-1.2.6/fastcluster/src/python/setup.py | 8 - fastcluster-1.2.6/fastcluster/src/python/tests/nantest.py | 6 - fastcluster-1.2.6/fastcluster/src/python/tests/test.py | 6 - fastcluster-1.2.6/fastcluster/src/python/tests/vectortest.py | 6 - fastcluster-1.2.6/fastcluster/tests/test_fastcluster.R | 6 - fastcluster-1.2.6/fastcluster/vignettes/fastcluster.Rtex | 8 - 26 files changed, 95 insertions(+), 93 deletions(-)
Title: Bayesian Inference and Model Selection for Stochastic Epidemics
Description: Bayesian analysis for stochastic extensions of non-linear
dynamic systems using advanced computational algorithms. Described in Bouranis, L.,
Demiris, N., Kalogeropoulos, K., and Ntzoufras, I. (2022) <arXiv:2211.15229>.
Author: Lampros Bouranis [aut, cre, cph]
,
European Union [fnd]
Maintainer: Lampros Bouranis <bernadette.aueb@gmail.com>
Diff between Bernadette versions 1.1.4 dated 2023-06-06 and 1.1.5 dated 2024-01-12
DESCRIPTION | 14 MD5 | 16 NAMESPACE | 94 R/Bernadette-package.R | 2 R/globals.R | 5 R/priors.R | 13 inst/doc/Bernadette.html | 2 inst/stan/igbm.stan | 86 src/stanExports_igbm.h | 6401 ++++++++++++++++++++++++++--------------------- 9 files changed, 3713 insertions(+), 2920 deletions(-)
Title: Retrieve ESPN Fantasy Football Data
Description: Format the raw data from the ESPN fantasy football API
<https://fantasy.espn.com/apis/v3/games/ffl/> as data frames.
Retrieve data on public leagues, rosters, athletes, and matches.
Author: Kiernan Nicholls [aut, cre, cph]
Maintainer: Kiernan Nicholls <kiernann@protonmail.com>
Diff between fflr versions 2.2.0 dated 2023-09-14 and 2.2.1 dated 2024-01-12
DESCRIPTION | 8 +- MD5 | 24 +++---- NEWS.md | 11 +++ R/corrections.R | 2 R/members.R | 3 R/teams.R | 4 + README.md | 18 ++--- build/vignette.rds |binary inst/doc/fantasy-football.html | 133 ++++++++++++++++++++++++----------------- man/stat_corrections.Rd | 3 tests/testthat/test-best.R | 2 tests/testthat/test-events.R | 4 - tests/testthat/test-members.R | 4 - 13 files changed, 126 insertions(+), 90 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-09 2.4.3
2020-09-03 2.4.2
2020-06-06 2.4.1
2020-01-28 2.4
2017-06-16 2.3.1
2017-06-15 2.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-29 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-14 0.1.1
2018-11-30 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-19 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-31 0.1.6
2021-10-05 0.1.5
2020-12-15 0.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-16 0.3.1
2022-05-16 0.3.2
2022-04-10 0.3.0
2022-02-15 0.2.0
2022-02-09 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-19 1.3.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-10 2.1.0
2019-12-20 2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-15 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-03-25 0.2.4
2021-04-23 0.2.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-08 2.3.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-07 1.3.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-08-01 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-02-21 0.9.0.5
Title: Prediction Rule Ensembles
Description: Derives prediction rule ensembles (PREs). Largely follows the
procedure for deriving PREs as described in Friedman & Popescu (2008;
<DOI:10.1214/07-AOAS148>), with adjustments and improvements. The
main function pre() derives prediction rule ensembles consisting of
rules and/or linear terms for continuous, binary, count, multinomial,
and multivariate continuous responses. Function gpe() derives
generalized prediction ensembles, consisting of rules, hinge and linear
functions of the predictor variables.
Author: Marjolein Fokkema [aut, cre],
Benjamin Christoffersen [aut]
Maintainer: Marjolein Fokkema <m.fokkema@fsw.leidenuniv.nl>
Diff between pre versions 1.0.6 dated 2023-02-12 and 1.0.7 dated 2024-01-12
DESCRIPTION | 8 MD5 | 64 NAMESPACE | 5 NEWS | 26 R/mi_pre.R |only R/pre.R | 812 +++++++-- R/utils.R | 28 build/partial.rdb |binary build/vignette.rds |binary inst/doc/missingness.R | 37 inst/doc/missingness.Rmd | 74 inst/doc/missingness.html | 830 +++++++--- inst/doc/relaxed.R | 88 - inst/doc/relaxed.Rmd | 168 +- inst/doc/relaxed.html | 768 ++++++--- inst/doc/speed.R |only inst/doc/speed.Rmd |only inst/doc/speed.html |only inst/doc/tuning.R | 20 inst/doc/tuning.Rmd | 11 inst/doc/tuning.html | 655 +++++-- man/mi_mean.Rd |only man/mi_pre.Rd |only man/pairplot.Rd | 84 - man/pre.Rd | 25 man/prune_pre.Rd |only man/rare_level_sampler.Rd | 6 man/singleplot.Rd | 49 tests/testthat/previous_results/airquality_w_mi_mean.RDS |only tests/testthat/previous_results/airquality_w_pre_with_adaptive_lasso.RDS |only tests/testthat/previous_results/airquality_w_pre_with_relaxed_adaptive_lasso.RDS |only tests/testthat/previous_results/airquality_w_relaxed_pre_with_prune_pre.RDS |only tests/testthat/previous_results/coef_airquality_w_mi_pre.RDS |only tests/testthat/tests_mi_pre.R |only tests/testthat/tests_pre.R | 24 vignettes/bib.bib |only vignettes/bib_style.csl |only vignettes/missingness.Rmd | 74 vignettes/relaxed.Rmd | 168 +- vignettes/speed.Rmd |only vignettes/tuning.Rmd | 11 41 files changed, 2920 insertions(+), 1115 deletions(-)
Title: NanoString Quality Control Dashboard
Description: NanoString nCounter data are gene expression assays
where there is no need for the use of enzymes or amplification
protocols and work with fluorescent barcodes (Geiss et al. (2018)
<doi:10.1038/nbt1385>). Each barcode is assigned a
messenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with its
target can be counted. As a result each count of a specific barcode
represents the presence of its target mRNA/miRNA. 'NACHO' (NAnoString
quality Control dasHbOard) is able to analyse the exported NanoString
nCounter data and facilitates the user in performing a quality
control. 'NACHO' does this by visualising quality control metrics,
expression of control genes, principal components and sample specific
size factors in an interactive web application.
Author: Mickael Canouil [aut, cre] ,
Roderick Slieker [aut] ,
Gerard Bouland [aut]
Maintainer: Mickael Canouil <pro@mickael.canouil.dev>
Diff between NACHO versions 2.0.5 dated 2023-08-07 and 2.0.6 dated 2024-01-12
DESCRIPTION | 10 - MD5 | 22 +- NEWS.md | 7 R/autoplot.R | 12 - R/qc_positive_control.R | 8 - build/partial.rdb |binary build/vignette.rds |binary data/GSE74821.rda |binary inst/doc/NACHO-analysis.R | 14 - inst/doc/NACHO-analysis.html | 106 +++---------- inst/doc/NACHO.R | 102 ++++++------- inst/doc/NACHO.html | 334 +++++++++---------------------------------- 12 files changed, 190 insertions(+), 425 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-12 2.9.0
2022-04-22 2.8.1
2019-03-11 2.8.0
2016-04-23 2.6
2016-04-23 2.6.1
2013-09-13 2.5
2013-02-07 2.4
2011-10-19 2.3.1
2011-01-20 2.3
2009-11-03 2.2
2009-04-15 2.1
2009-01-13 2.0.4
2008-11-30 2.0.3
2008-11-06 2.0.2
2008-10-12 2.0.1
2008-09-12 2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-09-08 0.0-3
2023-06-21 0.0-2
2023-06-09 0.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-12-31 1.0.3
2016-06-20 1.0.1
2016-03-24 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-14 2.3.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-12 2.8.1
2019-04-04 2.8.0
2018-07-23 2.7.0
2016-09-04 2.6.2
2013-09-13 2.5
2013-02-07 2.4
2011-10-19 2.3.1
2011-01-20 2.3
2009-11-03 2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-08 4.1-10
2022-06-10 4.1-9
2021-09-03 4.1-8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-03-04 0.0.13
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-12 2.8.1
2019-03-11 2.8.0
2018-07-23 2.7.0
2016-04-23 2.6
2013-09-13 2.5
2013-02-07 2.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-16 0.3.8
2021-09-05 0.3.6
2021-08-25 0.3.4
2020-08-05 0.3.1
2013-04-20 0.2.5
2013-01-05 0.2.2
2012-11-16 0.2.1
2010-02-09 0.1.3
2008-11-05 0.1.2
2007-01-05 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-12 2.8.1
2019-03-11 2.8.0
2018-07-23 2.7.0
2016-04-23 2.6
2013-09-12 2.5.2
2013-02-07 2.4
2011-10-19 2.3.1
2011-01-20 2.3
2009-11-03 2.2
2009-07-31 2.1.1
2009-04-15 2.1
2009-01-13 2.0.4
2008-11-30 2.0.3
2008-11-06 2.0.2
2008-10-12 2.0.1
2008-09-12 2.0
2007-07-30 1.9
2006-11-28 1.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-12 2.8.1
2019-03-11 2.8.0
2018-07-23 2.7.0
2016-04-23 2.6
2013-09-13 2.5
2013-02-07 2.4
2011-10-19 2.3.1
2011-01-20 2.3
2009-11-03 2.2
2009-07-31 2.1.1
2009-04-15 2.1
2008-12-08 2.0.4
2008-11-30 2.0.3
2008-11-06 2.0.2
2008-10-12 2.0.1
2008-09-12 2.0
2007-07-30 1.9
2006-11-28 1.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-12 0.1.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-08 1.2.0
2018-08-03 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-14 1.2.0
2018-08-05 1.1.0
2013-09-14 0.9
2011-01-21 0.8
2009-11-04 0.7
2009-02-28 0.6.1
2007-08-25 0.5.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-12 2.8.1
2019-03-11 2.8.0
2018-07-23 2.7.1
2016-04-24 2.6
2015-02-03 2.5.1
2013-09-13 2.5
2013-09-08 2.4.1
2013-02-07 2.4
2012-01-16 2.3.3
2011-02-15 2.3.1
2011-01-20 2.3
2010-02-08 2.2.1
2009-11-03 2.2
2009-07-03 2.1.1
2009-04-15 2.1
2008-11-30 2.0.3
2008-11-06 2.0.2
2008-10-12 2.0.1
2008-09-15 2.0
2007-07-30 1.9
2006-11-28 1.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-14 1.2.0
2018-08-04 1.1.0
2013-09-14 0.9.1
2013-03-22 0.9
2011-01-21 0.8
2009-11-04 0.7
2009-02-28 0.6.1
2007-08-25 0.5.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-13 4.0.3
2018-06-08 4.0.2
2018-04-11 4.0.1
2015-07-15 4.0.0
2012-04-19 3.0.1
2011-09-16 3.0.0
2010-05-08 2.2.0
2010-02-25 2.1.3
2009-10-26 2.1.2
2009-03-25 2.1.1
2008-07-16 2.1
2008-06-01 2.0
2008-05-16 1.8.5
2007-12-05 1.8.4
2007-12-04 1.8.3
2007-11-20 1.8.2
2007-11-17 1.8.1
2007-11-13 1.8
2007-10-02 1.7.2
2007-08-09 1.7.1
2007-07-12 1.7
2007-04-13 1.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-11 1.1-2
2021-03-16 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-16 1.3.1
2019-04-25 1.2.1
2019-04-07 1.2.0
2018-08-03 1.1.0
2017-04-23 1.0.1
2016-09-05 1.0
2013-09-13 0.9
2011-10-19 0.8.1
2011-01-20 0.8
2009-11-04 0.7
2009-01-13 0.6.3
2008-11-30 0.6.2
2008-09-15 0.6.0
2007-08-25 0.5.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-11 1.2.0
2018-08-03 1.1.0
2013-09-13 0.9.2
2013-02-08 0.9
2011-01-21 0.8
2009-11-04 0.7
2009-02-28 0.5.2
Title: Mapping Data for 'usmap' Package
Description: Provides a container for data used by the 'usmap' package.
The data used by 'usmap' has been extracted into this package so that the
file size of the 'usmap' package can be reduced greatly. The data in this
package will be updated roughly once per year (plus bug fixes) as new
shape files are provided by the US Census bureau.
Author: Paolo Di Lorenzo [aut, cre]
Maintainer: Paolo Di Lorenzo <dilorenzo@hey.com>
Diff between usmapdata versions 0.1.2 dated 2023-12-10 and 0.2.0 dated 2024-01-12
usmapdata-0.1.2/usmapdata/R/us_map.R |only usmapdata-0.1.2/usmapdata/R/usmapdata.R |only usmapdata-0.1.2/usmapdata/inst/extdata/county_fips.csv |only usmapdata-0.1.2/usmapdata/inst/extdata/state_fips.csv |only usmapdata-0.1.2/usmapdata/inst/extdata/us_counties.csv |only usmapdata-0.1.2/usmapdata/inst/extdata/us_counties_centroids.csv |only usmapdata-0.1.2/usmapdata/inst/extdata/us_states.csv |only usmapdata-0.1.2/usmapdata/inst/extdata/us_states_centroids.csv |only usmapdata-0.2.0/usmapdata/DESCRIPTION | 12 - usmapdata-0.2.0/usmapdata/MD5 | 52 ++-- usmapdata-0.2.0/usmapdata/NAMESPACE | 1 usmapdata-0.2.0/usmapdata/NEWS.md | 16 + usmapdata-0.2.0/usmapdata/R/create-us-map.R |only usmapdata-0.2.0/usmapdata/R/fips-data.R | 38 ++- usmapdata-0.2.0/usmapdata/R/us-map.R |only usmapdata-0.2.0/usmapdata/R/usmapdata-package.R |only usmapdata-0.2.0/usmapdata/README.md | 107 +++------- usmapdata-0.2.0/usmapdata/inst/extdata/legacy |only usmapdata-0.2.0/usmapdata/inst/extdata/us_counties.gpkg |only usmapdata-0.2.0/usmapdata/inst/extdata/us_counties_centroids.gpkg |only usmapdata-0.2.0/usmapdata/inst/extdata/us_states.gpkg |only usmapdata-0.2.0/usmapdata/inst/extdata/us_states_centroids.gpkg |only usmapdata-0.2.0/usmapdata/man/centroid_labels.Rd | 10 usmapdata-0.2.0/usmapdata/man/col_classes_centroids.Rd | 2 usmapdata-0.2.0/usmapdata/man/col_classes_map.Rd | 2 usmapdata-0.2.0/usmapdata/man/create_us_map.Rd |only usmapdata-0.2.0/usmapdata/man/fips_data.Rd | 8 usmapdata-0.2.0/usmapdata/man/us_map.Rd | 12 - usmapdata-0.2.0/usmapdata/man/usmapdata.Rd | 12 - usmapdata-0.2.0/usmapdata/tests/testthat.R | 8 usmapdata-0.2.0/usmapdata/tests/testthat/test-fips-data-sf.R |only usmapdata-0.2.0/usmapdata/tests/testthat/test-fips-data.R | 1 usmapdata-0.2.0/usmapdata/tests/testthat/test-usmap-sf.R |only usmapdata-0.2.0/usmapdata/tests/testthat/test-usmap.R | 1 34 files changed, 163 insertions(+), 119 deletions(-)
Title: Extracts Environmental Data from 'ERDDAP' Web Services
Description: Contains three functions that access
environmental data from any 'ERDDAP' data web service. The rxtracto() function extracts
data along a trajectory for a given "radius" around the point. The
rxtracto_3D() function extracts data in a box. The rxtractogon() function
extracts data in a polygon. All of those three function use the 'rerddap' package
to extract the data, and should work with any 'ERDDAP' server.
There are also two functions, plotBBox() and plotTrack() that use the 'plotdap'
package to simplify the creation of maps of the data.
Author: Roy Mendelssohn [aut, cre],
Marie Auger-Methe [ctb],
Sunny Bak-Hospital [ctb]
Maintainer: Roy Mendelssohn <roy.mendelssohn@noaa.gov>
Diff between rerddapXtracto versions 1.1.7 dated 2023-10-18 and 1.2.0 dated 2024-01-12
DESCRIPTION | 18 - MD5 | 25 +- NEWS.md | 4 R/PB_Argos.R |only R/rxtracto.R | 7 R/rxtracto_3D.R | 6 README.md | 7 build/vignette.rds |binary data/PB_Argos.RData |only inst/doc/UsingrerddapXtracto.R | 77 +++++++ inst/doc/UsingrerddapXtracto.Rmd | 298 ++++++++++++++++++---------- inst/doc/UsingrerddapXtracto.html | 400 ++++++++++++++++++++++++-------------- man/PB_Argos.Rd |only man/rerddapXtracto.Rd | 1 vignettes/UsingrerddapXtracto.Rmd | 298 ++++++++++++++++++---------- 15 files changed, 758 insertions(+), 383 deletions(-)
More information about rerddapXtracto at CRAN
Permanent link
Title: General Purpose Client for 'ERDDAP' Servers
Description: General purpose R client for 'ERDDAP' servers. Includes
functions to search for 'datasets', get summary information on
'datasets', and fetch 'datasets', in either 'csv' or 'netCDF' format.
'ERDDAP' information:
<https://upwell.pfeg.noaa.gov/erddap/information.html>.
Author: Scott Chamberlain [aut],
Ben Tupper [ctb],
Salvador Jesus Fernandez Bejarano [ctb],
Roy Mendelssohn [cre, ctb]
Maintainer: Roy Mendelssohn <roy.mendelssohn@noaa.gov>
Diff between rerddap versions 1.0.4 dated 2023-08-22 and 1.1.0 dated 2024-01-12
DESCRIPTION | 14 ++--- MD5 | 18 +++---- NEWS.md | 4 + R/ncdf_helpers.R | 5 + R/table.R | 43 ++++++++++++++++- build/vignette.rds |binary inst/doc/Using_rerddap.R | 111 ++++++++++++++++++++++++++------------------ inst/doc/Using_rerddap.Rmd | 55 +++++++++++++++------ inst/doc/Using_rerddap.html | 100 ++++++++++++++++++++++++--------------- vignettes/Using_rerddap.Rmd | 55 +++++++++++++++------ 10 files changed, 276 insertions(+), 129 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-13 1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-07-23 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-10 0.24
2018-02-12 0.20
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-19 1.1.4
2017-03-21 1.1.3
2016-02-16 1.1.0
2015-10-09 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-12-15 0.1-7
2020-01-31 0.1-6
2019-01-25 0.1-5
2018-04-18 0.1-4
2016-08-19 0.1-2
2015-07-15 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-18 0.1.1
2021-02-17 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-05-24 1.4.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-07-19 2.1.27
2022-10-05 2.0
2022-08-19 1.8
2022-03-03 1.7
2022-02-07 1.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-07 1.3.0
2015-07-08 1.2.1
2015-06-17 1.2
2015-04-28 1.1
2015-04-01 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-01 0.2.5
2017-06-02 0.2.4
2016-12-13 0.2.3
2016-08-12 0.2.2
2016-07-01 0.2.1
2016-02-12 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-11 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-12-18 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-18 1.3.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-01-09 1.9.5
2022-08-08 1.9.3
2022-02-16 1.9.0
2021-09-21 1.8.4
2021-07-20 1.8.2
2021-07-13 1.8.1
2021-02-11 1.8.0
2021-01-22 1.7.4
2021-01-11 1.7.3
2020-10-24 1.7.2
2020-09-14 1.7.0
2020-06-23 1.6.0
2020-06-15 1.5.0
2020-03-17 1.4.2
2020-02-05 1.4.1
2019-12-14 1.4.0
2019-10-31 1.3.3
2019-10-04 1.3.2
2019-09-16 1.3.1
2019-06-12 1.2.0
2018-11-24 1.1.1
2017-12-01 1.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-21 0.6.8
2023-04-02 0.6.7
2022-06-12 0.6.4
2022-03-08 0.6.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-21 1.1.1
2017-02-25 1.1.0
2016-09-04 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-08 0.3.9
2021-02-06 0.3.2
2020-05-14 0.3.0
2019-12-12 0.2.12
2019-10-21 0.2.11
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-19 0.10
2018-04-23 0.9
2018-04-15 0.8
2018-01-24 0.7
2018-01-02 0.6
2017-10-03 0.5
2017-09-18 0.4
2017-09-04 0.3
2017-07-17 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-02-22 0.5.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-03 1.1.16
Title: Tools for Processing and Analyzing Files from the Hydrological
Catchment Model HYPE
Description: Work with model files (setup, input, output) from
the hydrological catchment model HYPE: Streamlined file import and export, standard
evaluation plot routines, diverse post-processing and aggregation routines
for hydrological model analysis.
Author: Rene Capell [aut, cre] ,
Conrad Brendel [aut] ,
Jafet Andersson [ctb],
David Gustafsson [ctb],
Jude Musuuza [ctb],
Jude Lubega [ctb]
Maintainer: Rene Capell <hypetools.rene@smhi.se>
Diff between HYPEtools versions 1.6.0 dated 2023-10-18 and 1.6.1 dated 2024-01-12
DESCRIPTION | 18 MD5 | 80 ++-- NAMESPACE | 9 NEWS.md | 20 + R/distinctColorPalette.R |only R/function_AnnualRegime.R | 4 R/function_MapRegionalSources.R | 54 ++ R/function_PlotAnnualRegime.R | 4 R/function_PlotBasinOutput.R | 2 R/function_PlotMapPoints.R | 23 + R/function_PlotPerformanceByAttribute.R | 56 ++- R/function_PlotSimObsRegime.R | 13 R/function_PlotSubbasinRouting.R | 16 R/function_SortGeoData.R | 8 R/function_VariableLookup.R | 4 R/function_VisualizeMapOutput.R | 10 R/function_VisualizeMapPoints.R | 14 R/functioncollection_import.R | 90 ++++ R/sysdata.rda |binary build/vignette.rds |binary inst/doc/analyze_hype_ts.html | 594 ++++++++++++++++---------------- inst/doc/basin_characteristics.html | 388 ++++++++++---------- inst/doc/basin_network.html | 64 +-- inst/doc/import_files.html | 282 +++++++-------- inst/doc/modify_par.html | 510 +++++++++++++-------------- inst/doc/plot_map_statistics.html | 234 ++++++------ inst/visualize_map_output/server.R | 28 + inst/visualize_map_output/ui.R | 12 inst/visualize_map_points/server.R | 30 + inst/visualize_map_points/ui.R | 12 man/AnnualRegime.Rd | 4 man/MapRegionalSources.Rd | 17 man/PlotAnnualRegime.Rd | 4 man/PlotBasinOutput.Rd | 2 man/PlotMapPoints.Rd | 3 man/PlotPerformanceByAttribute.Rd | 10 man/PlotSubbasinRouting.Rd | 8 man/SortGeoData.Rd | 2 man/VariableLookup.Rd | 7 man/VisualizeMapOutput.Rd | 10 man/VisualizeMapPoints.Rd | 14 man/distinctColorPalette.Rd |only 42 files changed, 1489 insertions(+), 1171 deletions(-)
Title: Nicely Formatted Contingency Tables and Frequency Tables
Description: Nicely formatted frequency tables and contingency tables (1-way, 2-way, 3-way and 4-way tables), that can easily be exported to HTML or 'Office' documents, including 'Excel'. Designed to work with pipes.
Author: Mans Thulin [aut, cre],
Kajsa Grind [aut],
Stefan Furne [aut]
Maintainer: Mans Thulin <mans@statistikkonsult.com>
Diff between ivo.table versions 0.2 dated 2023-12-05 and 0.3 dated 2024-01-12
DESCRIPTION | 8 MD5 | 23 +- NEWS.md | 6 R/ivo_tables.R | 400 ++++++++++++++++++++++++++----------------- man/ivo_flextable_to_xlsx.Rd | 41 ++-- man/ivo_table.Rd | 106 +++++++++++ man/ivo_table_masked.Rd | 6 tests |only 8 files changed, 416 insertions(+), 174 deletions(-)
Title: Graphical Independence Filtering
Description: Provides a method of recovering the precision matrix for Gaussian graphical models efficiently. Our approach could be divided into three categories. First of all, we use Hard Graphical Thresholding for best subset selection problem of Gaussian graphical model, and the core concept of this method was proposed by Luo et al. (2014) <arXiv:1407.7819>. Secondly, a closed form solution for graphical lasso under acyclic graph structure is implemented in our package (Fattahi and Sojoudi (2019) <https://jmlr.org/papers/v20/17-501.html>). Furthermore, we implement block coordinate descent algorithm to efficiently solve the covariance selection problem (Dempster (1972) <doi:10.2307/2528966>). Our package is computationally efficient and can solve ultra-high-dimensional problems, e.g. p > 10,000, in a few minutes.
Author: Shiyun Lin [aut, cre],
Jin Zhu [aut],
Junxian Zhu [aut],
Xueqin Wang [aut],
SC2S2 [cph]
Maintainer: Shiyun Lin <linshy27@mail2.sysu.edu.cn>
Diff between gif versions 0.1.0 dated 2020-06-03 and 0.1.1 dated 2024-01-12
DESCRIPTION | 8 - MD5 | 24 +-- NEWS.md | 6 R/RcppExports.R | 2 README.md | 4 build/vignette.rds |binary inst/doc/gif.R | 8 - inst/doc/gif.Rmd | 4 inst/doc/gif.html | 314 ++++++++++++++++++++++++++++++++++------------------ src/Makevars | 2 src/Makevars.win | 2 src/RcppExports.cpp | 9 + vignettes/gif.Rmd | 4 13 files changed, 246 insertions(+), 141 deletions(-)
Title: Fast Nearest Neighbor Search Algorithms and Applications
Description: Cover-tree and kd-tree fast k-nearest neighbor search algorithms and related applications
including KNN classification, regression and information measures are implemented.
Author: Alina Beygelzimer, Sham Kakadet and John Langford ,
Sunil Arya and David Mount , Shengqiao Li
Maintainer: Shengqiao Li <lishengqiao@yahoo.com>
Diff between FNN versions 1.1.3.2 dated 2023-03-20 and 1.1.4 dated 2024-01-12
ChangeLog | 10 +++++++++- DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- man/KL.divergence.Rd | 2 +- src/ANN.cpp | 4 ++-- src/KNN_ANN.cpp | 44 ++++++++++++++++++++++++++++++++++---------- src/KNN_cover_tree.cpp | 46 +++++++++++++++++++++++++++++++++------------- src/init_FNN.c | 2 +- 8 files changed, 92 insertions(+), 40 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-28 2.0.2
2020-01-28 2.0.1
2020-01-26 2.0.0
2018-05-06 1.0.2
2018-04-18 1.0.1
2018-03-23 1.0
Title: Memory-Efficient Storage of Large Data on Disk and Fast Access
Functions
Description: The ff package provides data structures that are stored on
disk but behave (almost) as if they were in RAM by transparently
mapping only a section (pagesize) in main memory - the effective
virtual memory consumption per ff object. ff supports R's standard
atomic data types 'double', 'logical', 'raw' and 'integer' and
non-standard atomic types boolean (1 bit), quad (2 bit unsigned),
nibble (4 bit unsigned), byte (1 byte signed with NAs), ubyte (1 byte
unsigned), short (2 byte signed with NAs), ushort (2 byte unsigned),
single (4 byte float with NAs). For example 'quad' allows efficient
storage of genomic data as an 'A','T','G','C' factor. The unsigned
types support 'circular' arithmetic. There is also support for
close-to-atomic types 'factor', 'ordered', 'POSIXct', 'Date' and
custom close-to-atomic types.
ff not only has native C-support for vectors, matrices and arrays
with flexible dimorder (major column-order, major row-order and
generalizations for arrays). There is also a ffdf cla [...truncated...]
Author: Daniel Adler [aut],
Christian Glaeser [aut],
Oleg Nenadic [aut],
Jens Oehlschlaegel [aut, cre],
Martijn Schuemie [aut],
Walter Zucchini [aut]
Maintainer: Jens Oehlschlaegel <Jens.Oehlschlaegel@truecluster.com>
Diff between ff versions 4.0.9 dated 2023-01-25 and 4.0.12 dated 2024-01-12
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 3 ++- NEWS | 26 +++++++++++++++++++++++++- R/zzz.R | 2 +- src/r_ff.c | 8 ++++---- 6 files changed, 41 insertions(+), 16 deletions(-)
Title: Bayesian Dynamic Factor Analysis (DFA) with 'Stan'
Description: Implements Bayesian dynamic factor analysis with 'Stan'. Dynamic
factor analysis is a dimension reduction tool for multivariate time series.
'bayesdfa' extends conventional dynamic factor models in several ways.
First, extreme events may be estimated in the latent trend by modeling
process error with a student-t distribution. Second, alternative constraints
(including proportions are allowed). Third, the estimated
dynamic factors can be analyzed with hidden Markov models to evaluate
support for latent regimes.
Author: Eric J. Ward [aut, cre],
Sean C. Anderson [aut],
Luis A. Damiano [aut],
Michael J. Malick [aut],
Mary E. Hunsicker, [ctb],
Mike A. Litzow [ctb],
Mark D. Scheuerell [ctb],
Elizabeth E. Holmes [ctb],
Nick Tolimieri [ctb],
Trustees of Columbia Universit [...truncated...]
Maintainer: Eric J. Ward <eric.ward@noaa.gov>
Diff between bayesdfa versions 1.3.1 dated 2023-10-11 and 1.3.2 dated 2024-01-12
DESCRIPTION | 12 MD5 | 42 NEWS.md | 5 R/fit_dfa.R | 49 R/invert_chains.R | 19 inst/doc/a1_bayesdfa.R | 9 inst/doc/a1_bayesdfa.Rmd | 13 inst/doc/a1_bayesdfa.html | 304 ++--- inst/doc/a2_combining_data.html | 4 inst/doc/a3_covariates.html | 4 inst/doc/a4_smooth.html | 4 inst/doc/a5_estimate_process_sigma.html | 4 inst/doc/a6_compositional.html | 4 inst/doc/a7_bigdata.html | 4 inst/stan/dfa.stan | 123 +- inst/stan/hmm_gaussian.stan | 30 inst/stan/regime_1.stan | 6 man/fit_dfa.Rd | 17 src/stanExports_dfa.h | 1775 +++++++++++++++----------------- src/stanExports_hmm_gaussian.h | 76 - src/stanExports_regime_1.h | 12 vignettes/a1_bayesdfa.Rmd | 13 22 files changed, 1295 insertions(+), 1234 deletions(-)
Title: Diversity Analysis for Sequence Data
Description: The full form is Garai and Mantri Biological Material Diversity. It is an R package designed for the calculation of biological diversity using sequence data. It simplifies the process by requiring only sample IDs and accession numbers. Whether you're analyzing genetic or microbial diversity, It provides efficient tools for diversity analysis. Serially one should go for the functions as presented here expand_accession_ranges(), get_sequence_information(), preprocess_for_alignment(), write_fasta(), SampleID_vs_NumSequences(), data_sampling(), alignment_info(), compute_average_similarity_matrix(), generate_heatmaps(), clustering_average_similarity(), clustering_percent_similarity(), bubble_plot_count(), bubble_plot_percentage(), tree_average_similarity(), tree_percent_similarity(). Till date there are total 15 functions. More details can be found in Faith (1992) <doi:10.1016/0006-3207(92)91201-3>.
Author: Sandip Garai [aut, cre],
Shrikant Mantri [aut]
Maintainer: Sandip Garai <sandipnicksandy@gmail.com>
Diff between GaMaBioMD versions 0.1.0 dated 2024-01-12 and 0.2.0 dated 2024-01-12
DESCRIPTION | 8 MD5 | 11 NAMESPACE | 8 R/compiled_code_gamabiomd.R | 746 +++++++++++++++++++++++++++++++++ man/K.clustering_percent_similarity.Rd |only man/L.bubble_plot_count.Rd |only man/M.bubble_plot_percentage.Rd |only man/N.tree_average_similarity.Rd |only man/O.tree_percent_similarity.Rd |only 9 files changed, 766 insertions(+), 7 deletions(-)
Title: Depth-Based Classification and Calculation of Data Depth
Description: Contains procedures for depth-based supervised learning, which are entirely non-parametric, in particular the DDalpha-procedure (Lange, Mosler and Mozharovskyi, 2014 <doi:10.1007/s00362-012-0488-4>). The training data sample is transformed by a statistical depth function to a compact low-dimensional space, where the final classification is done. It also offers an extension to functional data and routines for calculating certain notions of statistical depth functions. 50 multivariate and 5 functional classification problems are included. (Pokotylo, Mozharovskyi and Dyckerhoff, 2019 <doi:10.18637/jss.v091.i05>).
Author: Oleksii Pokotylo [aut, cre],
Pavlo Mozharovskyi [aut],
Rainer Dyckerhoff [aut],
Stanislav Nagy [aut]
Maintainer: Oleksii Pokotylo <alexey.pokotylo@gmail.com>
Diff between ddalpha versions 1.3.13 dated 2022-03-23 and 1.3.15 dated 2024-01-12
DESCRIPTION | 9 ++++----- MD5 | 24 ++++++++++++------------ R/compclassf.r | 32 ++++++++++++++++---------------- R/dataf.r | 2 +- R/ddalphaf.r | 28 ++++++++++++++-------------- R/depth.contours.r | 2 +- R/draw.ddplot.r | 4 ++-- R/lda.r | 4 ++-- R/qda.r | 4 ++-- man/L2metric.Rd | 6 +++--- man/dataf.tecator.Rd | 4 ++-- man/ddalpha-package.Rd | 4 ++-- man/getdata.Rd | 2 +- 13 files changed, 62 insertions(+), 63 deletions(-)
Title: Concordance Correlation Coefficient for Repeated (and
Non-Repeated) Measures
Description: Estimates the Concordance Correlation Coefficient to assess agreement. The scenarios considered are non-repeated measures, non-longitudinal repeated measures (replicates) and longitudinal repeated measures. It also includes the estimation of the one-way intraclass correlation coefficient also known as reliability index. The estimation approaches implemented are variance components and U-statistics approaches. Description of methods can be found in Fleiss (1986) <doi:10.1002/9781118032923> and Carrasco et al. (2013) <doi:10.1016/j.cmpb.2012.09.002>.
Author: Josep Lluis Carrasco <jlcarrasco@ub.edu>, Josep Puig Martinez
<j.puig04@gmail.com>
Maintainer: Josep Lluis Carrasco <jlcarrasco@ub.edu>
Diff between cccrm versions 2.2.0 dated 2023-10-26 and 2.2.1 dated 2024-01-12
cccrm-2.2.0/cccrm/data/bdaw.txt |only cccrm-2.2.0/cccrm/data/bfat.txt |only cccrm-2.2.0/cccrm/data/bpres.txt |only cccrm-2.2.1/cccrm/DESCRIPTION | 8 ++++---- cccrm-2.2.1/cccrm/MD5 | 10 +++++----- cccrm-2.2.1/cccrm/R/icc.R | 2 +- cccrm-2.2.1/cccrm/data/bdaw.txt.gz |only cccrm-2.2.1/cccrm/data/bfat.txt.gz |only cccrm-2.2.1/cccrm/data/bpres.txt.gz |only 9 files changed, 10 insertions(+), 10 deletions(-)
Title: Support Functions and Datasets for Venables and Ripley's MASS
Description: Functions and datasets to support Venables and Ripley,
"Modern Applied Statistics with S" (4th edition, 2002).
Author: Brian Ripley [aut, cre, cph],
Bill Venables [ctb],
Douglas M. Bates [ctb],
Kurt Hornik [trl] ,
Albrecht Gebhardt [trl] ,
David Firth [ctb]
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between MASS versions 7.3-60.1 dated 2023-07-17 and 7.3-60.2 dated 2024-01-12
MASS-7.3-60.1/MASS/tests/MASS-Ex.Rout |only MASS-7.3-60.2/MASS/ChangeLog | 6 + MASS-7.3-60.2/MASS/DESCRIPTION | 8 +- MASS-7.3-60.2/MASS/R/loglm.R | 18 ++-- MASS-7.3-60.2/MASS/build/partial.rdb |binary MASS-7.3-60.2/MASS/inst/po/en@quot/LC_MESSAGES/R-MASS.mo |binary MASS-7.3-60.2/MASS/po/R-MASS.pot | 13 +-- MASS-7.3-60.2/MASS/po/R-de.po | 8 +- MASS-7.3-60.2/MASS/po/R-fr.po | 55 ++++++++++----- MASS-7.3-60.2/MASS/po/R-it.po | 8 +- MASS-7.3-60.2/MASS/po/R-ko.po | 8 +- MASS-7.3-60.2/MASS/po/R-pl.po | 20 ++--- MASS-7.3-60.2/MASS/tests/loglm.R |only 13 files changed, 84 insertions(+), 60 deletions(-)
Title: R and C++ Interfaces to 'spdlog' C++ Header Library for Logging
Description: The mature and widely-used C++ logging library 'spdlog' by Gabi Melman provides
many desirable features. This package bundles these header files for easy use by R packages
from both their R and C or C++ code. Explicit use via 'LinkingTo:' is also supported. Also
see the 'spdl' package which enhanced this package with a consistent R and C++ interface.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppSpdlog versions 0.0.15 dated 2023-11-29 and 0.0.16 dated 2024-01-12
ChangeLog | 4 DESCRIPTION | 8 MD5 | 184 +-- build/partial.rdb |binary inst/include/spdlog/async.h | 59 - inst/include/spdlog/async_logger-inl.h | 72 - inst/include/spdlog/async_logger.h | 50 inst/include/spdlog/cfg/argv.h | 16 inst/include/spdlog/cfg/env.h | 12 inst/include/spdlog/cfg/helpers-inl.h | 63 - inst/include/spdlog/cfg/helpers.h | 10 inst/include/spdlog/common-inl.h | 40 inst/include/spdlog/common.h | 353 +++--- inst/include/spdlog/details/backtracer-inl.h | 38 inst/include/spdlog/details/backtracer.h | 13 inst/include/spdlog/details/circular_q.h | 85 - inst/include/spdlog/details/console_globals.h | 18 inst/include/spdlog/details/file_helper-inl.h | 98 - inst/include/spdlog/details/file_helper.h | 9 inst/include/spdlog/details/fmt_helper.h | 121 -- inst/include/spdlog/details/log_msg-inl.h | 49 inst/include/spdlog/details/log_msg.h | 15 inst/include/spdlog/details/log_msg_buffer-inl.h | 26 inst/include/spdlog/details/log_msg_buffer.h | 9 inst/include/spdlog/details/mpmc_blocking_q.h | 89 - inst/include/spdlog/details/null_mutex.h | 28 inst/include/spdlog/details/os-inl.h | 418 +++---- inst/include/spdlog/details/os.h | 33 inst/include/spdlog/details/periodic_worker-inl.h | 12 inst/include/spdlog/details/periodic_worker.h | 29 inst/include/spdlog/details/registry-inl.h | 170 +- inst/include/spdlog/details/registry.h | 19 inst/include/spdlog/details/synchronous_factory.h | 10 inst/include/spdlog/details/tcp_client-windows.h | 101 - inst/include/spdlog/details/tcp_client.h | 85 - inst/include/spdlog/details/thread_pool-inl.h | 132 +- inst/include/spdlog/details/thread_pool.h | 61 - inst/include/spdlog/details/udp_client-windows.h | 69 - inst/include/spdlog/details/udp_client.h | 55 inst/include/spdlog/details/windows_include.h | 4 inst/include/spdlog/fmt/bin_to_hex.h | 164 +- inst/include/spdlog/fmt/chrono.h | 21 inst/include/spdlog/fmt/compile.h | 21 inst/include/spdlog/fmt/fmt.h | 35 inst/include/spdlog/fmt/ostr.h | 21 inst/include/spdlog/fmt/ranges.h | 21 inst/include/spdlog/fmt/std.h | 25 inst/include/spdlog/fmt/xchar.h | 21 inst/include/spdlog/formatter.h | 7 inst/include/spdlog/fwd.h | 2 inst/include/spdlog/logger-inl.h | 195 +-- inst/include/spdlog/logger.h | 262 +--- inst/include/spdlog/pattern_formatter-inl.h | 1196 +++++++++------------ inst/include/spdlog/pattern_formatter.h | 72 - inst/include/spdlog/sinks/android_sink.h | 141 +- inst/include/spdlog/sinks/ansicolor_sink-inl.h | 112 - inst/include/spdlog/sinks/ansicolor_sink.h | 27 inst/include/spdlog/sinks/base_sink-inl.h | 50 inst/include/spdlog/sinks/base_sink.h | 11 inst/include/spdlog/sinks/basic_file_sink-inl.h | 30 inst/include/spdlog/sinks/basic_file_sink.h | 41 inst/include/spdlog/sinks/callback_sink.h | 31 inst/include/spdlog/sinks/daily_file_sink.h | 183 +-- inst/include/spdlog/sinks/dist_sink.h | 50 inst/include/spdlog/sinks/dup_filter_sink.h | 48 inst/include/spdlog/sinks/hourly_file_sink.h | 125 -- inst/include/spdlog/sinks/kafka_sink.h | 98 - inst/include/spdlog/sinks/mongo_sink.h | 87 - inst/include/spdlog/sinks/msvc_sink.h | 45 inst/include/spdlog/sinks/null_sink.h | 21 inst/include/spdlog/sinks/ostream_sink.h | 25 inst/include/spdlog/sinks/qt_sinks.h | 224 ++- inst/include/spdlog/sinks/ringbuffer_sink.h | 29 inst/include/spdlog/sinks/rotating_file_sink-inl.h | 94 - inst/include/spdlog/sinks/rotating_file_sink.h | 42 inst/include/spdlog/sinks/sink-inl.h | 11 inst/include/spdlog/sinks/sink.h | 9 inst/include/spdlog/sinks/stdout_color_sinks-inl.h | 30 inst/include/spdlog/sinks/stdout_color_sinks.h | 30 inst/include/spdlog/sinks/stdout_sinks-inl.h | 108 - inst/include/spdlog/sinks/stdout_sinks.h | 35 inst/include/spdlog/sinks/syslog_sink.h | 90 - inst/include/spdlog/sinks/systemd_sink.h | 97 - inst/include/spdlog/sinks/tcp_sink.h | 44 inst/include/spdlog/sinks/udp_sink.h | 39 inst/include/spdlog/sinks/win_eventlog_sink.h | 195 +-- inst/include/spdlog/sinks/wincolor_sink-inl.h | 138 +- inst/include/spdlog/sinks/wincolor_sink.h | 25 inst/include/spdlog/spdlog-inl.h | 85 - inst/include/spdlog/spdlog.h | 209 +-- inst/include/spdlog/stopwatch.h | 33 inst/include/spdlog/tweakme.h | 3 inst/include/spdlog/version.h | 5 93 files changed, 3302 insertions(+), 4128 deletions(-)
Title: Sensitivity Analysis of Neural Networks
Description: Analysis functions to quantify inputs importance in neural network models.
Functions are available for calculating and plotting the inputs importance and obtaining
the activation function of each neuron layer and its derivatives. The importance of a given
input is defined as the distribution of the derivatives of the output with respect to that
input in each training data point <doi:10.18637/jss.v102.i07>.
Author: Jose Portela Gonzalez [aut],
Antonio Munoz San Roque [aut],
Jaime Pizarroso Gonzalo [aut, ctb, cre]
Maintainer: Jaime Pizarroso Gonzalo <jpizarroso@comillas.edu>
Diff between NeuralSens versions 1.0.3 dated 2023-06-17 and 1.1.1 dated 2024-01-12
NeuralSens-1.0.3/NeuralSens/data/syntheticdata.rdata |only NeuralSens-1.0.3/NeuralSens/man/syntheticdata.Rd |only NeuralSens-1.1.1/NeuralSens/DESCRIPTION | 9 NeuralSens-1.1.1/NeuralSens/MD5 | 36 +-- NeuralSens-1.1.1/NeuralSens/NAMESPACE | 3 NeuralSens-1.1.1/NeuralSens/R/AlphaSensCurve.R | 137 +++++++------ NeuralSens-1.1.1/NeuralSens/R/ComputeSensMeasures.R | 6 NeuralSens-1.1.1/NeuralSens/R/SensAnalysisMLP.R | 148 +++++++++++++-- NeuralSens-1.1.1/NeuralSens/R/SensMLP.R | 107 ++++++++++ NeuralSens-1.1.1/NeuralSens/R/SensMatPlot.R | 2 NeuralSens-1.1.1/NeuralSens/R/SensitivityPlots.R | 100 ++++++++-- NeuralSens-1.1.1/NeuralSens/R/data.R | 42 ---- NeuralSens-1.1.1/NeuralSens/R/kstepmalgorithm.R |only NeuralSens-1.1.1/NeuralSens/man/AlphaSensAnalysis.Rd | 21 +- NeuralSens-1.1.1/NeuralSens/man/ChangeBootAlpha.Rd |only NeuralSens-1.1.1/NeuralSens/man/SensAnalysisMLP.Rd | 11 + NeuralSens-1.1.1/NeuralSens/man/SensMLP.Rd | 12 + NeuralSens-1.1.1/NeuralSens/man/SensMatPlot.Rd | 2 NeuralSens-1.1.1/NeuralSens/man/SensitivityPlots.Rd | 11 - NeuralSens-1.1.1/NeuralSens/man/find_critical_value.Rd |only NeuralSens-1.1.1/NeuralSens/man/kStepMAlgorithm.Rd |only NeuralSens-1.1.1/NeuralSens/man/print.summary.SensMLP.Rd | 5 22 files changed, 475 insertions(+), 177 deletions(-)
Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker <DOI:10.1007/978-3-319-21416-0>, "Meta-Analysis with R" (2015):
- common effect and random effects meta-analysis;
- several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble);
- three-level meta-analysis model;
- generalised linear mixed model;
- Hartung-Knapp method for random effects model;
- Kenward-Roger method for random effects model;
- prediction interval;
- statistical tests for funnel plot asymmetry;
- trim-and-fill method to evaluate bias in meta-analysis;
- meta-regression;
- cumulative meta-analysis and leave-one-out meta-analysis;
- import data from 'RevMan 5';
- produce forest plot summarising several (subgroup) meta-analyses.
Author: Guido Schwarzer [cre, aut]
Maintainer: Guido Schwarzer <guido.schwarzer@uniklinik-freiburg.de>
Diff between meta versions 6.5-0 dated 2023-06-07 and 7.0-0 dated 2024-01-12
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Title: Estimation of Hawkes Processes from Binned Observations
Description: Implements an estimation method for Hawkes processes when count data are only observed in discrete time, using a spectral approach derived from the Bartlett spectrum, see Cheysson and Lang (2020) <arXiv:2003.04314>. Some general use functions for Hawkes processes are also included: simulation of (in)homogeneous Hawkes process, maximum likelihood estimation, residual analysis, etc.
Author: Felix Cheysson [aut, cre]
Maintainer: Felix Cheysson <felix@cheysson.fr>
Diff between hawkesbow versions 1.0.2 dated 2021-04-09 and 1.0.3 dated 2024-01-12
hawkesbow-1.0.2/hawkesbow/vignettes/hawkes-eps-converted-to.pdf |only hawkesbow-1.0.3/hawkesbow/DESCRIPTION | 6 hawkesbow-1.0.3/hawkesbow/LICENSE | 4 hawkesbow-1.0.3/hawkesbow/MD5 | 97 hawkesbow-1.0.3/hawkesbow/NAMESPACE | 98 hawkesbow-1.0.3/hawkesbow/R/RcppExports.R | 196 hawkesbow-1.0.3/hawkesbow/R/discretize.R | 74 hawkesbow-1.0.3/hawkesbow/R/hawkes.R | 1162 +-- hawkesbow-1.0.3/hawkesbow/R/hawkes_ogata.R | 456 - hawkesbow-1.0.3/hawkesbow/R/hawkesbow-package.R | 96 hawkesbow-1.0.3/hawkesbow/R/kernels.R | 264 hawkesbow-1.0.3/hawkesbow/R/mle.R | 188 hawkesbow-1.0.3/hawkesbow/R/powerlaw.R | 155 hawkesbow-1.0.3/hawkesbow/R/whittle.R | 550 - hawkesbow-1.0.3/hawkesbow/README.md | 1206 +-- hawkesbow-1.0.3/hawkesbow/build/vignette.rds |binary hawkesbow-1.0.3/hawkesbow/inst/doc/hawkesbow.R | 92 hawkesbow-1.0.3/hawkesbow/inst/doc/hawkesbow.Rmd | 588 - hawkesbow-1.0.3/hawkesbow/inst/doc/hawkesbow.pdf |binary hawkesbow-1.0.3/hawkesbow/man/E1_imaginary.Rd | 52 hawkesbow-1.0.3/hawkesbow/man/Etheta_imaginary.Rd | 54 hawkesbow-1.0.3/hawkesbow/man/Exponential.Rd | 96 hawkesbow-1.0.3/hawkesbow/man/Model.Rd | 180 hawkesbow-1.0.3/hawkesbow/man/compensator.Rd | 88 hawkesbow-1.0.3/hawkesbow/man/discrete.Rd | 54 hawkesbow-1.0.3/hawkesbow/man/dpowerlaw.Rd | 86 hawkesbow-1.0.3/hawkesbow/man/hawkes.Rd | 86 hawkesbow-1.0.3/hawkesbow/man/hawkes_ogata.Rd | 66 hawkesbow-1.0.3/hawkesbow/man/hawkesbow-package.Rd | 94 hawkesbow-1.0.3/hawkesbow/man/inc_gamma_imag.Rd | 70 hawkesbow-1.0.3/hawkesbow/man/inhpois.Rd | 58 hawkesbow-1.0.3/hawkesbow/man/intensity.Rd | 96 hawkesbow-1.0.3/hawkesbow/man/mle.Rd | 104 hawkesbow-1.0.3/hawkesbow/man/plot.hawkes.Rd | 102 hawkesbow-1.0.3/hawkesbow/man/plot.hawkes_ogata.Rd | 56 hawkesbow-1.0.3/hawkesbow/man/plot.inhpois.Rd | 52 hawkesbow-1.0.3/hawkesbow/man/residuals.Rd | 98 hawkesbow-1.0.3/hawkesbow/man/whittle.Rd | 114 hawkesbow-1.0.3/hawkesbow/src/Makevars | 1 hawkesbow-1.0.3/hawkesbow/src/Makevars.win | 1 hawkesbow-1.0.3/hawkesbow/src/PowerLaw.cpp | 2 hawkesbow-1.0.3/hawkesbow/src/RcppExports.cpp | 5 hawkesbow-1.0.3/hawkesbow/src/utils.cpp | 4 hawkesbow-1.0.3/hawkesbow/tests/testthat.R | 8 hawkesbow-1.0.3/hawkesbow/tests/testthat/test-E1_and_inc_gamma.R | 426 - hawkesbow-1.0.3/hawkesbow/tests/testthat/test-mle.R | 94 hawkesbow-1.0.3/hawkesbow/tests/testthat/test-model.R | 56 hawkesbow-1.0.3/hawkesbow/vignettes/hawkes.eps | 3164 +++++----- hawkesbow-1.0.3/hawkesbow/vignettes/hawkesbow.Rmd | 588 - hawkesbow-1.0.3/hawkesbow/vignettes/references.bib | 288 50 files changed, 5738 insertions(+), 5737 deletions(-)
Title: General Equilibrium Modeling
Description: Some tools for developing general equilibrium models and some general equilibrium models. These models can be used for teaching economic theory and are built by the methods of new structural economics (see <https://www.nse.pku.edu.cn/> and LI Wu, 2019, ISBN: 9787521804225, General Equilibrium and Structural Dynamics: Perspectives of New Structural Economics. Beijing: Economic Science Press). The model form and mathematical methods can be traced back to J. von Neumann (1945, A Model of General Economic Equilibrium. The Review of Economic Studies, 13. pp. 1-9), J. G. Kemeny, O. Morgenstern and G. L. Thompson (1956, A Generalization of the von Neumann Model of an Expanding Economy, Econometrica, 24, pp. 115-135) et al. By the way, J. G. Kemeny is a co-inventor of the computer language BASIC.
Author: LI Wu <liwu@staff.shu.edu.cn>
Maintainer: LI Wu <liwu.shu@qq.com>
Diff between GE versions 0.4.1 dated 2023-12-01 and 0.4.2 dated 2024-01-12
DESCRIPTION | 6 MD5 | 102 +++---- NAMESPACE | 1 R/demCreditPolicy.R | 4 R/gemAssetPricing_PUF.R | 2 R/gemBalancedGrowthPath.R | 2 R/gemCanonicalDynamicMacroeconomic_3_2.R | 4 R/gemCanonicalDynamicMacroeconomic_4_3.R | 8 R/gemCapitalAccumulation_3_3.R | 4 R/gemConstantGrowthPath_TechnologyProgress_3_3.R | 2 R/gemDualLinearProgramming.R | 75 ++++- R/gemExogenousUtilityLevel_EndogenousLaborSupply_3_3.R | 2 R/gemHeterogeneousFirms_2_3.R | 4 R/gemInstantaneousEquilibriumPath_StickyDecisions.R |only R/gemLand_Labor.R | 4 R/gemLand_Labor_Capital_4_3.R | 10 R/gemMarketClearingPath_2_2.R | 4 R/gemOLG_StochasticSequential_3_3.R | 6 R/gemPersistentTechnologicalProgress.R | 4 R/gemResearchDevelopmentIntensity.R | 6 R/gemTemporaryEquilibriumPath.R | 198 +++++++++----- R/gem_4_4.R | 2 R/gemstEndogenousLaborSupply_2_2.R | 2 R/gemstEndogenousProductionFunction_2_2.R | 2 R/gemstEndogenousUtilityFunction.R | 2 R/gemstStructuralMultipleEquilibria_2_2.R | 4 R/policyMarketClearingPrice.R | 4 R/sdm2.R | 10 man/demCreditPolicy.Rd | 4 man/gemAssetPricing_PUF.Rd | 2 man/gemBalancedGrowthPath.Rd | 2 man/gemCanonicalDynamicMacroeconomic_3_2.Rd | 4 man/gemCanonicalDynamicMacroeconomic_4_3.Rd | 8 man/gemCapitalAccumulation.Rd | 4 man/gemConstantGrowthPath_TechnologyProgress_3_3.Rd | 2 man/gemDualLinearProgramming.Rd | 82 ++++- man/gemExogenousUtilityLevel_EndogenousLaborSupply_3_3.Rd | 2 man/gemHeterogeneousFirms_2_3.Rd | 4 man/gemInstantaneousEquilibriumPath_StickyDecisions.Rd |only man/gemLand_Labor.Rd | 4 man/gemLand_Labor_Capital_4_3.Rd | 10 man/gemMarketClearingPath_2_2.Rd | 4 man/gemOLG_StochasticSequential_3_3.Rd | 6 man/gemPersistentTechnologicalProgress.Rd | 4 man/gemResearchDevelopmentIntensity.Rd | 6 man/gemTemporaryEquilibriumPath.Rd | 197 +++++++++---- man/gem_4_4.Rd | 2 man/gemstEndogenousLaborSupply_2_2.Rd | 2 man/gemstEndogenousProductionFunction_2_2.Rd | 2 man/gemstEndogenousUtilityFunction.Rd | 2 man/gemstStructuralMultipleEquilibria_2_2.Rd | 4 man/policyMarketClearingPrice.Rd | 4 man/sdm2.Rd | 10 53 files changed, 548 insertions(+), 297 deletions(-)
Title: R Interface to the 'DieHarder' RNG Test Suite
Description: The 'RDieHarder' package provides an R interface to
the 'DieHarder' suite of random number generators and tests that
was developed by Robert G. Brown and David Bauer, extending
earlier work by George Marsaglia and others. The 'DieHarder'
library code is included.
Author: Dirk Eddelbuettel, Robert G Brown, David Bauer
plus contributors to DieHarder
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RDieHarder versions 0.2.5 dated 2023-01-12 and 0.2.6 dated 2024-01-12
ChangeLog | 16 ++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- build/vignette.rds |binary inst/doc/RDieHarder.pdf |binary src/libdieharder/bits.c | 2 +- src/libdieharder/countx.c | 3 ++- src/libdieharder/rng_file_input.c | 6 +++--- src/libdieharder/rngav.c | 3 ++- src/libdieharder/sts_monobit.c | 2 +- 10 files changed, 38 insertions(+), 20 deletions(-)
Title: R Database Interface
Description: A database interface definition for communication between R
and relational database management systems. All classes in this
package are virtual and need to be extended by the various R/DBMS
implementations.
Author: R Special Interest Group on Databases [aut],
Hadley Wickham [aut],
Kirill Mueller [aut, cre] ,
R Consortium [fnd]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between DBI versions 1.2.0 dated 2023-12-21 and 1.2.1 dated 2024-01-12
DESCRIPTION | 31 ++-- MD5 | 178 ++++++++++++++------------ NEWS.md | 33 ++++ R/07-DBIResultArrow.R | 23 +++ R/11-dbAppendTable.R | 8 - R/12-dbCreateTable.R | 2 R/13-dbWriteTable.R | 8 - R/14-dbSendQuery.R | 7 - R/15-dbBind.R | 10 + R/21-dbAppendTableArrow.R | 31 ++++ R/22-dbCreateTableArrow.R | 38 +++++ R/23-dbWriteTableArrow.R | 39 +++++ R/24-dbSendQueryArrow.R | 45 ++++++ R/dbAppendTableArrow_DBIConnection.R | 8 - R/dbClearResult.R | 1 R/dbCreateTableArrow_DBIConnection.R | 14 -- R/dbExecute.R | 4 R/dbFetch.R | 2 R/dbFetchArrow.R | 36 +++++ R/dbFetchArrowChunk.R | 40 +++++ R/dbGetQuery.R | 7 - R/dbGetQueryArrow.R | 50 +++++++ R/dbHasCompleted.R | 1 R/dbIsValid.R | 1 R/dbQuoteIdentifier.R | 2 R/dbReadTable.R | 7 - R/dbReadTableArrow.R | 26 +++ R/dbSendQueryArrow_DBIConnection.R | 4 R/dbUnquoteIdentifier.R | 2 R/dbWriteTableArrow_DBIConnection.R | 15 +- R/deprecated.R | 2 R/sqlCreateTable.R | 2 README.md | 73 +++++----- build/DBI.pdf |binary build/stage23.rdb |binary inst/doc/DBI-arrow.R | 43 ++++-- inst/doc/DBI-arrow.Rmd | 143 ++++++++++++++------- inst/doc/DBI-arrow.html | 238 +++++++++++++++++++---------------- inst/doc/spec.html | 160 +++++++++-------------- man/DBI-package.Rd | 3 man/DBIConnection-class.Rd | 13 + man/DBIConnector-class.Rd | 3 man/DBIDriver-class.Rd | 3 man/DBIObject-class.Rd | 3 man/DBIResult-class.Rd | 11 - man/DBIResultArrow-class.Rd |only man/dbAppendTable.Rd | 33 ++-- man/dbAppendTableArrow.Rd |only man/dbBind.Rd | 62 +++++---- man/dbClearResult.Rd | 19 ++ man/dbColumnInfo.Rd | 4 man/dbCreateTable.Rd | 37 +++-- man/dbCreateTableArrow.Rd |only man/dbDataType.Rd | 14 +- man/dbDisconnect.Rd | 10 + man/dbExecute.Rd | 14 +- man/dbExistsTable.Rd | 14 +- man/dbFetch.Rd | 31 +--- man/dbFetchArrow.Rd |only man/dbFetchArrowChunk.Rd |only man/dbGetException.Rd | 10 + man/dbGetInfo.Rd | 14 +- man/dbGetQuery.Rd | 41 +++--- man/dbGetQueryArrow.Rd |only man/dbGetRowCount.Rd | 4 man/dbGetRowsAffected.Rd | 4 man/dbGetStatement.Rd | 8 - man/dbHasCompleted.Rd | 19 ++ man/dbIsReadOnly.Rd | 14 +- man/dbIsValid.Rd | 23 ++- man/dbListFields.Rd | 10 + man/dbListObjects.Rd | 20 +- man/dbListResults.Rd | 10 + man/dbListTables.Rd | 14 +- man/dbQuoteIdentifier.Rd | 41 +++--- man/dbQuoteLiteral.Rd | 4 man/dbQuoteString.Rd | 4 man/dbReadTable.Rd | 35 ++--- man/dbReadTableArrow.Rd |only man/dbRemoveTable.Rd | 14 +- man/dbSendQuery.Rd | 38 ++--- man/dbSendQueryArrow.Rd |only man/dbSendStatement.Rd | 10 + man/dbUnquoteIdentifier.Rd | 43 ++++-- man/dbWriteTable.Rd | 27 ++- man/dbWriteTableArrow.Rd |only man/dot-SQL92Keywords.Rd | 2 man/figures |only man/sqlCreateTable.Rd | 2 tests/testthat/test-DBItest.R | 9 + vignettes/DBI-arrow.Rmd | 143 ++++++++++++++------- 91 files changed, 1429 insertions(+), 742 deletions(-)
Title: SHAP Visualizations
Description: Visualizations for SHAP (SHapley Additive exPlanations), such
as waterfall plots, force plots, various types of importance plots,
dependence plots, and interaction plots. These plots act on a
'shapviz' object created from a matrix of SHAP values and a
corresponding feature dataset. Wrappers for the R packages 'xgboost',
'lightgbm', 'fastshap', 'shapr', 'h2o', 'treeshap', 'DALEX', and
'kernelshap' are added for convenience. By separating visualization
and computation, it is possible to display factor variables in graphs,
even if the SHAP values are calculated by a model that requires
numerical features. The plots are inspired by those provided by the
'shap' package in Python, but there is no dependency on it.
Author: Michael Mayer [aut, cre],
Adrian Stando [ctb]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between shapviz versions 0.9.2 dated 2023-10-14 and 0.9.3 dated 2024-01-12
shapviz-0.9.2/shapviz/man/figures/README-dep-multi.png |only shapviz-0.9.2/shapviz/man/figures/README-dep.svg |only shapviz-0.9.2/shapviz/man/figures/README-dep2.png |only shapviz-0.9.2/shapviz/man/figures/README-dep2D.png |only shapviz-0.9.2/shapviz/man/figures/README-imp1.svg |only shapviz-0.9.2/shapviz/man/figures/README-imp2.png |only shapviz-0.9.2/shapviz/man/figures/README-interactions.png |only shapviz-0.9.2/shapviz/man/figures/README-waterfall-agg.svg |only shapviz-0.9.2/shapviz/man/figures/VIGNETTE-imp.png |only shapviz-0.9.3/shapviz/DESCRIPTION | 19 shapviz-0.9.3/shapviz/MD5 | 103 -- shapviz-0.9.3/shapviz/NAMESPACE | 2 shapviz-0.9.3/shapviz/NEWS.md | 57 + shapviz-0.9.3/shapviz/R/methods.R | 61 + shapviz-0.9.3/shapviz/R/potential_interactions.R |only shapviz-0.9.3/shapviz/R/shapviz.R | 33 shapviz-0.9.3/shapviz/R/sv_dependence.R | 105 -- shapviz-0.9.3/shapviz/R/sv_dependence2D.R | 11 shapviz-0.9.3/shapviz/R/sv_force.R | 6 shapviz-0.9.3/shapviz/R/sv_importance.R | 5 shapviz-0.9.3/shapviz/R/sv_interaction.R | 6 shapviz-0.9.3/shapviz/R/sv_waterfall.R | 6 shapviz-0.9.3/shapviz/README.md | 170 --- shapviz-0.9.3/shapviz/inst/doc/basic_use.R | 68 - shapviz-0.9.3/shapviz/inst/doc/basic_use.Rmd | 314 +----- shapviz-0.9.3/shapviz/inst/doc/basic_use.html | 497 +++------- shapviz-0.9.3/shapviz/inst/doc/geographic.R | 8 shapviz-0.9.3/shapviz/inst/doc/geographic.Rmd | 12 shapviz-0.9.3/shapviz/inst/doc/geographic.html | 27 shapviz-0.9.3/shapviz/inst/doc/multiple_output.R | 6 shapviz-0.9.3/shapviz/inst/doc/multiple_output.Rmd | 22 shapviz-0.9.3/shapviz/inst/doc/multiple_output.html | 38 shapviz-0.9.3/shapviz/man/figures/README-dep.png |only shapviz-0.9.3/shapviz/man/figures/README-force.svg | 442 +------- shapviz-0.9.3/shapviz/man/figures/README-imp.svg |only shapviz-0.9.3/shapviz/man/figures/README-waterfall.svg | 397 +------ shapviz-0.9.3/shapviz/man/figures/VIGNETTE-dep-ranger.png |binary shapviz-0.9.3/shapviz/man/figures/VIGNETTE-dep.png |binary shapviz-0.9.3/shapviz/man/mshapviz.Rd | 4 shapviz-0.9.3/shapviz/man/plus-.shapviz.Rd | 11 shapviz-0.9.3/shapviz/man/potential_interactions.Rd | 64 + shapviz-0.9.3/shapviz/man/rbind.shapviz.Rd | 19 shapviz-0.9.3/shapviz/man/shapviz-package.Rd | 2 shapviz-0.9.3/shapviz/man/shapviz.Rd | 16 shapviz-0.9.3/shapviz/man/split.shapviz.Rd | 3 shapviz-0.9.3/shapviz/man/sv_dependence.Rd | 20 shapviz-0.9.3/shapviz/man/sv_dependence2D.Rd | 9 shapviz-0.9.3/shapviz/man/sv_force.Rd | 6 shapviz-0.9.3/shapviz/man/sv_importance.Rd | 5 shapviz-0.9.3/shapviz/man/sv_interaction.Rd | 6 shapviz-0.9.3/shapviz/man/sv_waterfall.Rd | 6 shapviz-0.9.3/shapviz/tests/testthat/test-collapse_shap.R | 24 shapviz-0.9.3/shapviz/tests/testthat/test-interface.R | 113 +- shapviz-0.9.3/shapviz/tests/testthat/test-plots-mshapviz.R | 255 ++--- shapviz-0.9.3/shapviz/tests/testthat/test-plots-shapviz.R | 348 +++---- shapviz-0.9.3/shapviz/tests/testthat/test-potential_interactions.R |only shapviz-0.9.3/shapviz/vignettes/basic_use.Rmd | 314 +----- shapviz-0.9.3/shapviz/vignettes/geographic.Rmd | 12 shapviz-0.9.3/shapviz/vignettes/multiple_output.Rmd | 22 59 files changed, 1364 insertions(+), 2310 deletions(-)
Title: Liquid Chromatography/Mass Spectrometry (LC/MS) Quality
Assessment
Description: The goal of 'LCMSQA' is to make it easy to check the quality of
liquid chromatograph/mass spectrometry (LC/MS) experiments using a
'shiny' application. This package provides interactive data
visualizations for quality control (QC) samples, including total
ion current chromatogram (TIC), base peak chromatogram (BPC), mass
spectrum, extracted ion chromatogram (XIC), and feature detection
results from internal standards or known metabolites.
Author: Jaehyun Joo [aut, cre],
Blanca Himes [aut]
Maintainer: Jaehyun Joo <jaehyunjoo@outlook.com>
Diff between LCMSQA versions 1.0.1 dated 2023-08-08 and 1.0.2 dated 2024-01-12
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NAMESPACE | 2 -- NEWS.md | 8 ++++++++ R/LCMSQA-package.R | 1 - R/ui.R | 6 ------ build/vignette.rds |binary 7 files changed, 19 insertions(+), 20 deletions(-)
Title: Interface for the 'Finnish Biodiversity Information Facility'
API
Description: A programmatic interface to the 'Finnish Biodiversity Information
Facility' ('FinBIF') API (<https://api.laji.fi>). 'FinBIF' aggregates
Finnish biodiversity data from multiple sources in a single open access
portal for researchers, citizen scientists, industry and government.
'FinBIF' allows users of biodiversity information to find, access, combine
and visualise data on Finnish plants, animals and microorganisms. The
'finbif' package makes the publicly available data in 'FinBIF' easily
accessible to programmers. Biodiversity information is available on taxonomy
and taxon occurrence. Occurrence data can be filtered by taxon, time,
location and other variables. The data accessed are conveniently
preformatted for subsequent analyses.
Author: Finnish Museum of Natural History - Luomus [cph],
William K. Morris [aut, cre]
Maintainer: William K. Morris <willi@mmorris.email>
Diff between finbif versions 0.9.3 dated 2023-09-28 and 0.9.4 dated 2024-01-12
DESCRIPTION | 10 +-- LICENSE | 2 MD5 | 44 ++++++------- NAMESPACE | 15 ---- NEWS.md | 22 ++++++ R/api_get.R | 38 ++++++++--- R/dates.R | 13 ++-- R/finbif_collections.R | 2 R/finbif_occurrence.R | 78 +++++++++++++----------- R/finbif_occurrence_load.R | 74 +++++++++++++++++----- R/finbif_records.R | 42 ++++++++---- R/sysdata.R | 4 - R/sysdata.rda |binary R/utils.R | 23 ------- R/variables.R | 8 +- README.md | 4 - build/vignette.rds |binary inst/NEWS.Rd | 24 +++++++ man/variables.Rd | 8 +- tests/testthat/_snaps/finbif_occurrence_load.md | 66 ++++++++++---------- tests/testthat/test-finbif_coords.R | 4 - tests/testthat/test-finbif_dates.R | 23 +++++-- tests/testthat/test-finbif_occurrence_load.R | 61 +++++++++++------- 23 files changed, 343 insertions(+), 222 deletions(-)
Title: 'Amazon Web Services' Cost Management Services
Description: Interface to 'Amazon Web Services' cost management services,
including cost and usage reports, budgets, pricing, and more
<https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.cost.management versions 0.4.0 dated 2023-09-11 and 0.5.0 dated 2024-01-12
DESCRIPTION | 14 MD5 | 148 ++++++---- NAMESPACE | 2 R/billingconductor_interfaces.R | 24 + R/billingconductor_operations.R | 46 ++- R/billingconductor_service.R | 43 +- R/budgets_operations.R | 16 - R/budgets_service.R | 38 +- R/costandusagereportservice_interfaces.R | 42 ++ R/costandusagereportservice_operations.R | 112 ++++++- R/costandusagereportservice_service.R | 67 ++-- R/costexplorer_interfaces.R | 2 R/costexplorer_service.R | 38 +- R/marketplacecatalog_interfaces.R | 22 + R/marketplacecatalog_operations.R | 70 +++- R/marketplacecatalog_service.R | 47 +-- R/marketplacecommerceanalytics_interfaces.R | 4 R/marketplacecommerceanalytics_operations.R | 58 ++- R/marketplacecommerceanalytics_service.R | 40 +- R/marketplaceentitlementservice_operations.R | 2 R/marketplaceentitlementservice_service.R | 38 +- R/marketplacemetering_service.R | 38 +- R/paymentcryptographycontrolplane_interfaces.R |only R/paymentcryptographycontrolplane_operations.R |only R/paymentcryptographycontrolplane_service.R |only R/paymentcryptographydataplane_interfaces.R |only R/paymentcryptographydataplane_operations.R |only R/paymentcryptographydataplane_service.R |only R/pricing_operations.R | 22 - R/pricing_service.R | 47 +-- R/savingsplans_service.R | 38 +- man/billingconductor.Rd | 42 +- man/billingconductor_create_custom_line_item.Rd | 6 man/billingconductor_get_billing_group_cost_report.Rd |only man/budgets.Rd | 38 +- man/budgets_describe_budget_notifications_for_account.Rd | 4 man/budgets_describe_budgets.Rd | 8 man/budgets_describe_notifications_for_budget.Rd | 2 man/budgets_describe_subscribers_for_notification.Rd | 2 man/costandusagereportservice.Rd | 69 ++-- man/costandusagereportservice_delete_report_definition.Rd | 6 man/costandusagereportservice_describe_report_definitions.Rd | 5 man/costandusagereportservice_list_tags_for_resource.Rd |only man/costandusagereportservice_modify_report_definition.Rd | 4 man/costandusagereportservice_put_report_definition.Rd | 4 man/costandusagereportservice_tag_resource.Rd |only man/costandusagereportservice_untag_resource.Rd |only man/costexplorer.Rd | 38 +- man/marketplacecatalog.Rd | 47 +-- man/marketplacecatalog_batch_describe_entities.Rd |only man/marketplacecatalog_delete_resource_policy.Rd | 6 man/marketplacecatalog_get_resource_policy.Rd | 6 man/marketplacecatalog_list_entities.Rd | 25 + man/marketplacecatalog_put_resource_policy.Rd | 6 man/marketplacecommerceanalytics.Rd | 40 +- man/marketplacecommerceanalytics_start_support_data_export.Rd | 68 ++-- man/marketplaceentitlementservice.Rd | 38 +- man/marketplacemetering.Rd | 40 +- man/paymentcryptographycontrolplane.Rd |only man/paymentcryptographycontrolplane_create_alias.Rd |only man/paymentcryptographycontrolplane_create_key.Rd |only man/paymentcryptographycontrolplane_delete_alias.Rd |only man/paymentcryptographycontrolplane_delete_key.Rd |only man/paymentcryptographycontrolplane_export_key.Rd |only man/paymentcryptographycontrolplane_get_alias.Rd |only man/paymentcryptographycontrolplane_get_key.Rd |only man/paymentcryptographycontrolplane_get_parameters_for_export.Rd |only man/paymentcryptographycontrolplane_get_parameters_for_import.Rd |only man/paymentcryptographycontrolplane_get_public_key_certificate.Rd |only man/paymentcryptographycontrolplane_import_key.Rd |only man/paymentcryptographycontrolplane_list_aliases.Rd |only man/paymentcryptographycontrolplane_list_keys.Rd |only man/paymentcryptographycontrolplane_list_tags_for_resource.Rd |only man/paymentcryptographycontrolplane_restore_key.Rd |only man/paymentcryptographycontrolplane_start_key_usage.Rd |only man/paymentcryptographycontrolplane_stop_key_usage.Rd |only man/paymentcryptographycontrolplane_tag_resource.Rd |only man/paymentcryptographycontrolplane_untag_resource.Rd |only man/paymentcryptographycontrolplane_update_alias.Rd |only man/paymentcryptographydataplane.Rd |only man/paymentcryptographydataplane_decrypt_data.Rd |only man/paymentcryptographydataplane_encrypt_data.Rd |only man/paymentcryptographydataplane_generate_card_validation_data.Rd |only man/paymentcryptographydataplane_generate_mac.Rd |only man/paymentcryptographydataplane_generate_pin_data.Rd |only man/paymentcryptographydataplane_re_encrypt_data.Rd |only man/paymentcryptographydataplane_translate_pin_data.Rd |only man/paymentcryptographydataplane_verify_auth_request_cryptogram.Rd |only man/paymentcryptographydataplane_verify_card_validation_data.Rd |only man/paymentcryptographydataplane_verify_mac.Rd |only man/paymentcryptographydataplane_verify_pin_data.Rd |only man/pricing.Rd | 46 +-- man/pricing_get_attribute_values.Rd | 2 man/pricing_get_price_list_file_url.Rd | 6 man/pricing_list_price_lists.Rd | 14 man/savingsplans.Rd | 38 +- tests/testthat/test_paymentcryptographycontrolplane.R |only tests/testthat/test_paymentcryptographydataplane.R |only 98 files changed, 982 insertions(+), 646 deletions(-)
More information about paws.cost.management at CRAN
Permanent link
Title: Read, Write and Edit 'xlsx' Files
Description: Simplifies the creation of 'xlsx' files by
providing a high level interface to writing, styling and editing
worksheets.
Author: Jordan Mark Barbone [aut] ,
Jan Marvin Garbuszus [aut, cre],
Oliver Roy [ctb],
openxlsx authors [cph] ,
Arseny Kapoulkine [ctb, cph]
Maintainer: Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>
Diff between openxlsx2 versions 1.2 dated 2023-11-29 and 1.3 dated 2024-01-12
DESCRIPTION | 8 - LICENSE | 2 MD5 | 84 ++++++------ NAMESPACE | 1 NEWS.md | 29 ++++ R/RcppExports.R | 4 R/baseXML.R | 21 +-- R/class-comment.R | 64 +++++++++ R/class-workbook-wrappers.R | 111 ++++++++++++++-- R/class-workbook.R | 170 ++++++++++++++++++-------- R/openxlsx2-package.R | 6 R/read.R | 17 +- R/wb_functions.R | 2 R/wb_load.R | 98 +++++++++----- R/write.R | 24 +++ inst/WORDLIST | 6 inst/doc/openxlsx2.html | 10 - inst/doc/openxlsx2_charts_manual.html | 12 - inst/doc/openxlsx2_style_manual.R | 4 inst/doc/openxlsx2_style_manual.Rmd | 4 inst/doc/openxlsx2_style_manual.html | 4 man/comment_internal.Rd | 8 + man/openxlsx2_options.Rd | 3 man/wbWorkbook.Rd | 36 +++++ man/wb_add_comment.Rd | 2 man/wb_add_pivot_table.Rd | 69 +++++++++- man/wb_add_slicer.Rd | 17 +- man/wb_cell_style.Rd | 25 +++ man/wb_load.Rd | 83 +++++++----- man/wb_protect_worksheet.Rd | 3 man/wb_to_df.Rd | 17 +- src/RcppExports.cpp | 12 + src/helper_functions.cpp | 51 +++++-- src/openxlsx2_types.h | 33 ++--- tests/testthat/test-class-comment.R | 40 ++++++ tests/testthat/test-class-workbook-wrappers.R | 17 ++ tests/testthat/test-class-workbook.R | 18 ++ tests/testthat/test-helper-functions.R | 20 ++- tests/testthat/test-loading_workbook.R | 9 + tests/testthat/test-read_from_created_wb.R | 14 ++ tests/testthat/test-wb_styles.R | 35 +++++ tests/testthat/test-write.R | 32 ++++ vignettes/openxlsx2_style_manual.Rmd | 4 43 files changed, 938 insertions(+), 291 deletions(-)
More information about EventPredInCure at CRAN
Permanent link
Title: Minimalist Async Evaluation Framework for R
Description: Lightweight parallel code execution and distributed computing.
Designed for simplicity, a 'mirai' evaluates an R expression asynchronously,
on local or network resources, resolving automatically upon completion.
Efficient scheduling over fast inter-process communications or secure TLS
connections over TCP/IP, built on 'nanonext' and 'NNG' (Nanomsg Next Gen).
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between mirai versions 0.11.3 dated 2023-12-07 and 0.12.0 dated 2024-01-12
DESCRIPTION | 8 - MD5 | 76 ++++++---- NAMESPACE | 3 NEWS.md | 14 + R/daemon.R | 20 +- R/daemons.R | 121 ++++++--------- R/dispatcher.R | 25 ++- R/launchers.R | 74 ++++++--- R/mirai-package.R | 12 - R/mirai.R | 28 +-- R/parallel.R | 23 +-- R/promises.R | 5 README.md | 174 +++++++--------------- build/vignette.rds |binary inst/CITATION | 2 inst/doc/mirai.Rmd | 334 +++++--------------------------------------- inst/doc/mirai.html | 250 +++++--------------------------- inst/doc/parallel.Rmd |only inst/doc/parallel.html |only inst/doc/plumber.Rmd |only inst/doc/plumber.html |only inst/doc/promises.Rmd |only inst/doc/promises.html |only inst/doc/shiny.R |only inst/doc/shiny.Rmd |only inst/doc/shiny.html |only inst/doc/torch.Rmd |only inst/doc/torch.html |only man/daemon.Rd | 14 + man/daemons.Rd | 70 +++------ man/everywhere.Rd | 15 + man/host_url.Rd | 20 ++ man/mirai.Rd | 7 man/remote_config.Rd | 37 ++-- man/saisei.Rd | 15 + man/serialization.Rd | 19 +- tests/tests.R | 10 - vignettes/mirai.Rmd | 334 +++++--------------------------------------- vignettes/mirai.Rmd.orig | 166 --------------------- vignettes/parallel.Rmd |only vignettes/parallel.Rmd.orig |only vignettes/plumber.Rmd |only vignettes/plumber.Rmd.orig |only vignettes/precompile.R | 5 vignettes/promises.Rmd |only vignettes/promises.Rmd.orig |only vignettes/shiny.Rmd |only vignettes/torch.Rmd |only vignettes/torch.Rmd.orig |only 49 files changed, 530 insertions(+), 1351 deletions(-)
Title: Allocate Samples Among Strata
Description: Functions for the design process of survey sampling, with specific tools for multi-wave and multi-phase designs. Perform optimum allocation using Neyman (1934) <doi:10.2307/2342192> or Wright (2012) <doi:10.1080/00031305.2012.733679> allocation, split strata based on quantiles or values of known variables, randomly select samples from strata, allocate sampling waves iteratively, and organize a complex survey design. Also includes a Shiny application for observing the effects of different strata splits.
Author: Jasper Yang [aut, cre],
Pamela Shaw [aut],
Bryan Shepherd [ctb],
Thomas Lumley [ctb],
Gustavo Amorim [rev]
Maintainer: Jasper Yang <jbyang@uw.edu>
Diff between optimall versions 0.1.3 dated 2023-09-06 and 0.1.4 dated 2024-01-12
DESCRIPTION | 6 MD5 | 22 NEWS.md | 10 R/apply_multiwave.R | 5 R/optimum_allocation.R | 2 R/sample_strata.R | 2 inst/doc/Multiwave-Object.html | 448 ++++++++++---------- inst/doc/optimall-vignette.html | 772 +++++++++++++++++------------------ man/apply_multiwave.Rd | 3 man/optimum_allocation.Rd | 2 man/sample_strata.Rd | 2 tests/testthat/test-optimall_shiny.R | 3 12 files changed, 650 insertions(+), 627 deletions(-)
Title: Minimal R/Shiny Interface to JavaScript Library 'ECharts'
Description: Deliver the full functionality of 'ECharts' with minimal overhead. 'echarty' users build R lists for 'ECharts' API. Lean set of powerful commands.
Author: Larry Helgason, with initial code from John Coene's library echarts4r
Maintainer: Larry Helgason <larry@helgasoft.com>
Diff between echarty versions 1.6.2 dated 2023-10-15 and 1.6.3 dated 2024-01-12
echarty-1.6.2/echarty/inst/js/dataTool.min.js |only echarty-1.6.3/echarty/DESCRIPTION | 8 echarty-1.6.3/echarty/MD5 | 44 - echarty-1.6.3/echarty/NEWS.md | 20 echarty-1.6.3/echarty/R/echarty.R | 738 ++++++++++-------- echarty-1.6.3/echarty/R/examples.R | 102 +- echarty-1.6.3/echarty/R/util.R | 34 echarty-1.6.3/echarty/build/vignette.rds |binary echarty-1.6.3/echarty/demo/00Index | 1 echarty-1.6.3/echarty/demo/coder.R |only echarty-1.6.3/echarty/inst/htmlwidgets/echarty.yaml | 3 echarty-1.6.3/echarty/inst/js/renderers.js | 2 echarty-1.6.3/echarty/man/ec.clmn.Rd | 2 echarty-1.6.3/echarty/man/ec.examples.Rd | 102 +- echarty-1.6.3/echarty/man/ec.fromJson.Rd | 2 echarty-1.6.3/echarty/man/ec.init.Rd | 101 +- echarty-1.6.3/echarty/man/ec.inspect.Rd | 3 echarty-1.6.3/echarty/man/ec.upd.Rd | 2 echarty-1.6.3/echarty/man/ec.util.Rd | 4 echarty-1.6.3/echarty/man/ecr.band.Rd | 23 echarty-1.6.3/echarty/tests/testthat/test-ec.util.R | 18 echarty-1.6.3/echarty/tests/testthat/test-other.R | 114 +- echarty-1.6.3/echarty/tests/testthat/test-presets.R | 124 ++- echarty-1.6.3/echarty/tests/testthat/test-renderers.R | 13 24 files changed, 852 insertions(+), 608 deletions(-)