Title: APSIM Next Generation
Description: The Agricultural Production Systems sIMulator ('APSIM') is a widely
used to simulate the agricultural systems for multiple crops. This package
is designed to create, modify and run 'apsimx' files in the 'APSIM' Next
Generation <https://www.apsim.info/>.
Author: Bangyou Zheng [aut, cre]
Maintainer: Bangyou Zheng <bangyou.zheng@csiro.au>
Diff between rapsimng versions 0.3.0 dated 2021-09-09 and 0.4.2 dated 2024-01-21
rapsimng-0.3.0/rapsimng/inst/Models.Rds |only rapsimng-0.3.0/rapsimng/inst/Wheat.json |only rapsimng-0.3.0/rapsimng/inst/wheat.apsimx |only rapsimng-0.4.2/rapsimng/DESCRIPTION | 12 rapsimng-0.4.2/rapsimng/LICENSE | 4 rapsimng-0.4.2/rapsimng/MD5 | 113 +- rapsimng-0.4.2/rapsimng/NAMESPACE | 3 rapsimng-0.4.2/rapsimng/R/apsimx_build.R |only rapsimng-0.4.2/rapsimng/R/cultivar.R | 357 +++--- rapsimng-0.4.2/rapsimng/R/file.R | 56 - rapsimng-0.4.2/rapsimng/R/import_packages.R | 12 rapsimng-0.4.2/rapsimng/R/json_tree.R | 70 - rapsimng-0.4.2/rapsimng/R/models.R | 137 +- rapsimng-0.4.2/rapsimng/R/modify.R | 622 +++++------ rapsimng-0.4.2/rapsimng/R/program.R | 82 - rapsimng-0.4.2/rapsimng/R/report.R |only rapsimng-0.4.2/rapsimng/R/run_models.R | 104 - rapsimng-0.4.2/rapsimng/R/search.R | 444 ++++---- rapsimng-0.4.2/rapsimng/R/simulations.R | 386 +++--- rapsimng-0.4.2/rapsimng/R/utility.R | 134 +- rapsimng-0.4.2/rapsimng/README.md | 161 +- rapsimng-0.4.2/rapsimng/build/vignette.rds |binary rapsimng-0.4.2/rapsimng/inst/doc/modify.R | 158 +- rapsimng-0.4.2/rapsimng/inst/doc/modify.Rmd | 264 ++-- rapsimng-0.4.2/rapsimng/inst/doc/modify.html | 774 ++++++++------ rapsimng-0.4.2/rapsimng/inst/doc/sensitivity.R | 78 - rapsimng-0.4.2/rapsimng/inst/doc/sensitivity.Rmd | 142 +- rapsimng-0.4.2/rapsimng/inst/doc/sensitivity.html | 619 +++++++---- rapsimng-0.4.2/rapsimng/inst/extdata |only rapsimng-0.4.2/rapsimng/man/append_model.Rd | 92 - rapsimng-0.4.2/rapsimng/man/disable_models.Rd |only rapsimng-0.4.2/rapsimng/man/get_cultivar.Rd | 50 rapsimng-0.4.2/rapsimng/man/get_metfile.Rd | 48 rapsimng-0.4.2/rapsimng/man/get_parent.Rd | 48 rapsimng-0.4.2/rapsimng/man/get_simulations.Rd | 44 rapsimng-0.4.2/rapsimng/man/insert_model.Rd | 80 - rapsimng-0.4.2/rapsimng/man/insert_models.Rd | 80 - rapsimng-0.4.2/rapsimng/man/keep_simulations.Rd | 66 - rapsimng-0.4.2/rapsimng/man/list_report.Rd |only rapsimng-0.4.2/rapsimng/man/minimum_apsimng.Rd | 42 rapsimng-0.4.2/rapsimng/man/new_model.Rd | 40 rapsimng-0.4.2/rapsimng/man/read_apsimx.Rd | 42 rapsimng-0.4.2/rapsimng/man/read_report.Rd |only rapsimng-0.4.2/rapsimng/man/remove_model.Rd | 52 rapsimng-0.4.2/rapsimng/man/replace_model.Rd | 60 - rapsimng-0.4.2/rapsimng/man/run_models.Rd | 74 - rapsimng-0.4.2/rapsimng/man/search_node.Rd | 6 rapsimng-0.4.2/rapsimng/man/search_path.Rd | 6 rapsimng-0.4.2/rapsimng/man/set_parameter_value.Rd | 76 - rapsimng-0.4.2/rapsimng/man/test_apsimx.Rd |only rapsimng-0.4.2/rapsimng/man/update_cultivar.Rd | 17 rapsimng-0.4.2/rapsimng/man/write_apsimx.Rd | 38 rapsimng-0.4.2/rapsimng/tests/testthat.R | 8 rapsimng-0.4.2/rapsimng/tests/testthat/test-cultivar.R | 18 rapsimng-0.4.2/rapsimng/tests/testthat/test-modify.R | 388 +++---- rapsimng-0.4.2/rapsimng/tests/testthat/test-report.R |only rapsimng-0.4.2/rapsimng/tests/testthat/test-search.R | 281 ++--- rapsimng-0.4.2/rapsimng/tests/testthat/test-simulations.R | 125 +- rapsimng-0.4.2/rapsimng/tests/testthat/test-tree.R | 28 rapsimng-0.4.2/rapsimng/vignettes/modify.Rmd | 264 ++-- rapsimng-0.4.2/rapsimng/vignettes/sensitivity.Rmd | 142 +- 61 files changed, 3756 insertions(+), 3191 deletions(-)
Title: Interface for 'Google Pathways Language Model 2 (PaLM 2)'
Description: 'Google Pathways Language Model 2 (PaLM 2)' as a coding and writing assistant designed for 'R'. With a range of functions, including natural language processing and coding optimization, to assist 'R' developers in simplifying tedious coding tasks and content searching.
Author: Li Yuan [aut, cre]
Maintainer: Li Yuan <lyuan@gd.edu.kg>
Diff between PaLMr versions 0.1.4 dated 2023-10-20 and 0.2.0 dated 2024-01-21
PaLMr-0.1.4/PaLMr/R/explainCodePALM.R |only PaLMr-0.1.4/PaLMr/R/fixGrammarPALM.R |only PaLMr-0.1.4/PaLMr/R/getReferencePALM.R |only PaLMr-0.1.4/PaLMr/R/getTextPALM.R |only PaLMr-0.1.4/PaLMr/R/optimizeCodePALM.R |only PaLMr-0.1.4/PaLMr/R/setupPALM.R |only PaLMr-0.1.4/PaLMr/man/explainCodePALM.Rd |only PaLMr-0.1.4/PaLMr/man/fixGrammarPALM.Rd |only PaLMr-0.1.4/PaLMr/man/getReferencePALM.Rd |only PaLMr-0.1.4/PaLMr/man/getTextPALM.Rd |only PaLMr-0.1.4/PaLMr/man/optimizeCodePALM.Rd |only PaLMr-0.1.4/PaLMr/man/setupPALM.Rd |only PaLMr-0.2.0/PaLMr/DESCRIPTION | 23 ++++++++++-------- PaLMr-0.2.0/PaLMr/MD5 | 30 ++++++++++++------------ PaLMr-0.2.0/PaLMr/NAMESPACE | 22 ++++++++++------- PaLMr-0.2.0/PaLMr/R/PaLMr_utils.R | 19 --------------- PaLMr-0.2.0/PaLMr/R/palm.connect.R |only PaLMr-0.2.0/PaLMr/R/palm.txt.R |only PaLMr-0.2.0/PaLMr/R/palm.txt.explain.code.R |only PaLMr-0.2.0/PaLMr/R/palm.txt.fix.grammar.R |only PaLMr-0.2.0/PaLMr/R/palm.txt.get.reference.R |only PaLMr-0.2.0/PaLMr/R/palm.txt.optimize.code.R |only PaLMr-0.2.0/PaLMr/man/palm.connect.Rd |only PaLMr-0.2.0/PaLMr/man/palm.txt.Rd |only PaLMr-0.2.0/PaLMr/man/palm.txt.explain.code.Rd |only PaLMr-0.2.0/PaLMr/man/palm.txt.fix.grammar.Rd |only PaLMr-0.2.0/PaLMr/man/palm.txt.get.reference.Rd |only PaLMr-0.2.0/PaLMr/man/palm.txt.optimize.code.Rd |only 28 files changed, 42 insertions(+), 52 deletions(-)
Title: Clustering and Classification using Model-Based Mixture Models
Description: Algorithms and methods for model-based clustering and classification.
It supports various types of data: continuous, categorical and counting
and can handle mixed data of these types. It can fit Gaussian (with diagonal
covariance structure), gamma, categorical and Poisson models. The algorithms
also support missing values.
Author: Serge Iovleff [aut, cre],
Parmeet Bathia [ctb]
Maintainer: Serge Iovleff <Serge.Iovleff@stkpp.org>
Diff between MixAll versions 1.5.1 dated 2019-09-12 and 1.5.10 dated 2024-01-21
MixAll-1.5.1/MixAll/inst/projects/MixAll/ClusterFacade.h |only MixAll-1.5.1/MixAll/inst/projects/MixAll/ClusterLauncher.h |only MixAll-1.5.1/MixAll/inst/projects/MixAll/ClusterPredictor.h |only MixAll-1.5.1/MixAll/inst/projects/MixAll/ClusterPredictorMixedData.h |only MixAll-1.5.1/MixAll/inst/projects/MixAll/IClusterPredictor.h |only MixAll-1.5.1/MixAll/inst/projects/MixAll/ILauncher.h |only MixAll-1.5.1/MixAll/inst/projects/MixAll/ILauncherBase.h |only MixAll-1.5.1/MixAll/inst/projects/MixAll/KmmLauncher.h |only MixAll-1.5.1/MixAll/inst/projects/MixAll/LearnLauncher.h |only MixAll-1.5.1/MixAll/inst/projects/MixAll/MixAll_Util.h |only MixAll-1.5.1/MixAll/inst/projects/MixAll/RDataHandler.h |only MixAll-1.5.1/MixAll/src/ClusterFacade.cpp |only MixAll-1.5.1/MixAll/src/ClusterLauncher.cpp |only MixAll-1.5.1/MixAll/src/ClusterPredictor.cpp |only MixAll-1.5.1/MixAll/src/ClusterPredictorMixedData.cpp |only MixAll-1.5.1/MixAll/src/IClusterPredictor.cpp |only MixAll-1.5.1/MixAll/src/ILauncher.cpp |only MixAll-1.5.1/MixAll/src/ILauncherBase.cpp |only MixAll-1.5.1/MixAll/src/KmmLauncher.cpp |only MixAll-1.5.1/MixAll/src/LearnLauncher.cpp |only MixAll-1.5.1/MixAll/src/RDataHandler.cpp |only MixAll-1.5.1/MixAll/src/init_MixAll.c |only MixAll-1.5.10/MixAll/DESCRIPTION | 17 MixAll-1.5.10/MixAll/MD5 | 264 +++++----- MixAll-1.5.10/MixAll/R/ClusterAlgo.R | 12 MixAll-1.5.10/MixAll/R/ClusterGamma.R | 1 MixAll-1.5.10/MixAll/R/ClusterInit.R | 8 MixAll-1.5.10/MixAll/R/ClusterModelNames.R | 24 MixAll-1.5.10/MixAll/R/ClusterPlot.R | 2 MixAll-1.5.10/MixAll/R/ClusterPoisson.R | 2 MixAll-1.5.10/MixAll/R/ClusterPredict.R | 2 MixAll-1.5.10/MixAll/R/ClusterStrategy.R | 3 MixAll-1.5.10/MixAll/R/LearnAlgo.R | 8 MixAll-1.5.10/MixAll/R/MixAll.R | 11 MixAll-1.5.10/MixAll/R/kmm.R | 2 MixAll-1.5.10/MixAll/R/kmmNames.R | 4 MixAll-1.5.10/MixAll/build/vignette.rds |binary MixAll-1.5.10/MixAll/cleanup | 1 MixAll-1.5.10/MixAll/data/DebTrivedi.rda |binary MixAll-1.5.10/MixAll/data/HeartDisease.cat.rda |binary MixAll-1.5.10/MixAll/data/HeartDisease.cont.rda |binary MixAll-1.5.10/MixAll/data/HeartDisease.target.rda |binary MixAll-1.5.10/MixAll/data/birds.rda |binary MixAll-1.5.10/MixAll/data/bullsEye.cat.rda |binary MixAll-1.5.10/MixAll/data/bullsEye.rda |binary MixAll-1.5.10/MixAll/data/bullsEye.target.rda |binary MixAll-1.5.10/MixAll/data/car.rda |binary MixAll-1.5.10/MixAll/data/geyser.rda |binary MixAll-1.5.10/MixAll/inst/NEWS.Rd | 6 MixAll-1.5.10/MixAll/inst/doc/Introduction-Mixtures.R | 1 MixAll-1.5.10/MixAll/inst/doc/Introduction-Mixtures.pdf |binary MixAll-1.5.10/MixAll/inst/doc/Learning-Mixtures.R | 1 MixAll-1.5.10/MixAll/inst/doc/Learning-Mixtures.pdf |binary MixAll-1.5.10/MixAll/inst/include/Clustering.h | 9 MixAll-1.5.10/MixAll/inst/include/MixAll.h | 12 MixAll-1.5.10/MixAll/inst/makefile | 25 MixAll-1.5.10/MixAll/inst/projects/Clustering/include/GammaModels/STK_GammaParameters.h | 6 MixAll-1.5.10/MixAll/inst/projects/Clustering/include/GammaModels/STK_Gamma_a_bjk.h | 31 - MixAll-1.5.10/MixAll/inst/projects/Clustering/include/GammaModels/STK_Gamma_a_bk.h | 36 + MixAll-1.5.10/MixAll/inst/projects/Clustering/include/GammaModels/STK_Gamma_aj_bjk.h | 9 MixAll-1.5.10/MixAll/inst/projects/Clustering/include/GammaModels/STK_Gamma_aj_bk.h | 44 + MixAll-1.5.10/MixAll/inst/projects/Clustering/include/GammaModels/STK_Gamma_ajk_b.h | 13 MixAll-1.5.10/MixAll/inst/projects/Clustering/include/STK_IMixtureManager.h | 4 MixAll-1.5.10/MixAll/inst/projects/Clustering/include/STK_MixtureComposerFacade.h |only MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_CategoricalParameters.cpp | 2 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_Clust_Util.cpp | 14 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_DiagGaussianParameters.cpp | 2 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_FullStrategy.cpp | 8 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_GammaParameters.cpp | 2 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_IMixture.cpp | 4 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_IMixtureAlgo.cpp | 4 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_IMixtureAlgoLearn.cpp | 4 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_IMixtureAlgoPredict.cpp | 4 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_IMixtureComposer.cpp | 2 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_IMixtureLearner.cpp | 2 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_IMixtureModelBase.cpp | 2 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_IMixtureStatModel.cpp | 2 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_IMixtureStrategy.cpp | 6 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_KernelMixtureManager.cpp | 2 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_Kmm_s.cpp | 2 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_MixtureAlgo.cpp | 4 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_MixtureAlgoLearn.cpp | 4 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_MixtureAlgoPredict.cpp | 4 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_MixtureComposer.cpp | 2 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_MixtureFacade.cpp | 14 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_MixtureInit.cpp | 10 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_MixtureLearner.cpp | 3 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_MixtureSemiLearner.cpp | 4 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_PoissonParameters.cpp | 2 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_SimpleStrategy.cpp | 8 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/STK_XemStrategy.cpp | 8 MixAll-1.5.10/MixAll/inst/projects/Clustering/src/makefile | 2 MixAll-1.5.10/MixAll/inst/projects/MixAll/include |only MixAll-1.5.10/MixAll/inst/projects/MixAll/src |only MixAll-1.5.10/MixAll/man/DebTrivedi.Rd | 2 MixAll-1.5.10/MixAll/man/HeartDisease.Rd | 6 MixAll-1.5.10/MixAll/man/MixAll-package.Rd | 1 MixAll-1.5.10/MixAll/man/birds.Rd | 6 MixAll-1.5.10/MixAll/man/car.Rd | 6 MixAll-1.5.10/MixAll/man/clusterAlgo.Rd | 12 MixAll-1.5.10/MixAll/man/clusterAlgoPredict.Rd | 8 MixAll-1.5.10/MixAll/man/clusterCategorical.Rd | 9 MixAll-1.5.10/MixAll/man/clusterCategoricalNames.Rd | 4 MixAll-1.5.10/MixAll/man/clusterDiagGaussian.Rd | 11 MixAll-1.5.10/MixAll/man/clusterDiagGaussianNames.Rd | 13 MixAll-1.5.10/MixAll/man/clusterGamma.Rd | 11 MixAll-1.5.10/MixAll/man/clusterGammaNames.Rd | 20 MixAll-1.5.10/MixAll/man/clusterInit.Rd | 17 MixAll-1.5.10/MixAll/man/clusterMixedData.Rd | 10 MixAll-1.5.10/MixAll/man/clusterPoisson.Rd | 10 MixAll-1.5.10/MixAll/man/clusterPoissonNames.Rd | 4 MixAll-1.5.10/MixAll/man/clusterStrategy.Rd | 23 MixAll-1.5.10/MixAll/man/geyser.Rd | 8 MixAll-1.5.10/MixAll/man/initialize-methods.Rd | 138 +++-- MixAll-1.5.10/MixAll/man/kmm.Rd | 16 MixAll-1.5.10/MixAll/man/kmmMixedData.Rd | 10 MixAll-1.5.10/MixAll/man/kmmNames.Rd | 4 MixAll-1.5.10/MixAll/man/kmmStrategy.Rd | 20 MixAll-1.5.10/MixAll/man/learnAlgo.Rd | 8 MixAll-1.5.10/MixAll/man/learnMixedData.Rd | 13 MixAll-1.5.10/MixAll/man/learners.Rd | 56 +- MixAll-1.5.10/MixAll/src/Makevars | 44 - MixAll-1.5.10/MixAll/src/Makevars.win |only MixAll-1.5.10/MixAll/src/clusterMixedData.cpp | 7 MixAll-1.5.10/MixAll/src/clusterMixture.cpp | 7 MixAll-1.5.10/MixAll/src/clusterPredict.cpp | 9 MixAll-1.5.10/MixAll/src/computeGramMatrix.cpp | 6 MixAll-1.5.10/MixAll/src/computeKernel.cpp | 1 MixAll-1.5.10/MixAll/src/createKernel.cpp | 2 MixAll-1.5.10/MixAll/src/init_MixAll.cpp |only MixAll-1.5.10/MixAll/src/kmm.cpp | 13 MixAll-1.5.10/MixAll/src/kmmMixedData.cpp | 13 MixAll-1.5.10/MixAll/src/learnKernelMixture.cpp | 7 MixAll-1.5.10/MixAll/src/learnMixedData.cpp | 7 MixAll-1.5.10/MixAll/src/learnMixture.cpp | 7 MixAll-1.5.10/MixAll/tests/testAllLearners.R | 1 136 files changed, 757 insertions(+), 498 deletions(-)
Title: Lightweight Federal Information Processing System (FIPS) Code
Information Retrieval
Description: Provides a lightweight suite
of functions for retrieving information
about 5-digit or 2-digit US FIPS codes.
Author: Justin Singh-Mohudpur [aut, cre]
,
Mike Johnson [ctb] ,
Urban Flooding Open Knowledge Network [fnd]
Maintainer: Justin Singh-Mohudpur <justin@justinsingh.me>
Diff between fipio versions 1.1.1 dated 2022-03-15 and 1.1.2 dated 2024-01-21
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 14 +++++++++----- R/geolocate.R | 17 ++++++++++++----- README.md | 12 ++++++------ tests/testthat/test-fipio.R | 3 ++- 6 files changed, 39 insertions(+), 27 deletions(-)
Title: Streamline Building Panel Data from Panel Study of Income
Dynamics ('PSID') Raw Files
Description: Streamline the management, creation, and formatting of panel data from the Panel Study of Income Dynamics ('PSID') <https://psidonline.isr.umich.edu> using this user-friendly tool. Simply define variable names and input code book details directly from the 'PSID' official website, and this toolbox will efficiently facilitate the data preparation process, transforming raw 'PSID' files into a well-organized format ready for further analysis.
Author: Shuyi Qiu [aut, cre]
Maintainer: Shuyi Qiu <shuyi.qiu@duke.edu>
Diff between psidread versions 1.0.0 dated 2024-01-15 and 1.0.1 dated 2024-01-21
DESCRIPTION | 6 +++--- MD5 | 26 +++++++++++++------------- NEWS.md | 2 ++ R/psid_read.R | 11 ----------- R/psid_unzip.R | 12 ++++++------ README.md | 15 ++++++++++++--- inst/doc/my-vignette.R | 2 +- inst/doc/my-vignette.Rmd | 2 +- inst/doc/my-vignette.html | 10 +++++----- man/psid_read.Rd | 11 ----------- man/psid_unzip.Rd | 4 ++-- tests/testthat/test-psid_read.R | 3 --- tests/testthat/test-psid_unzip.R | 2 +- vignettes/my-vignette.Rmd | 2 +- 14 files changed, 47 insertions(+), 61 deletions(-)
Title: 'OpenAI' API R Interface
Description: A comprehensive set of helpers that streamline data transmission
and processing, making it effortless to interact with the 'OpenAI' API.
Author: Cezary Kuran [aut, cre]
Maintainer: Cezary Kuran <cezary.kuran@gmail.com>
Diff between oaii versions 0.1.9 dated 2024-01-13 and 0.3.0 dated 2024-01-21
oaii-0.1.9/oaii/R/demo.R |only oaii-0.1.9/oaii/inst |only oaii-0.1.9/oaii/man/demo_cli.Rd |only oaii-0.1.9/oaii/man/demo_shiny.Rd |only oaii-0.3.0/oaii/DESCRIPTION | 11 ++--- oaii-0.3.0/oaii/MD5 | 39 ++++++++------------- oaii-0.3.0/oaii/NAMESPACE | 9 +++- oaii-0.3.0/oaii/R/api_audio.R |only oaii-0.3.0/oaii/R/api_embeddings.R |only oaii-0.3.0/oaii/R/api_files.R | 8 ---- oaii-0.3.0/oaii/R/api_images.R | 38 +++++--------------- oaii-0.3.0/oaii/R/api_moderations.R |only oaii-0.3.0/oaii/R/api_utils.R |only oaii-0.3.0/oaii/man/api_upload_file.Rd |only oaii-0.3.0/oaii/man/audio_speech_request.Rd |only oaii-0.3.0/oaii/man/audio_transcription_request.Rd |only oaii-0.3.0/oaii/man/audio_translation_request.Rd |only oaii-0.3.0/oaii/man/embeddings_create_request.Rd |only oaii-0.3.0/oaii/man/embeddings_object_request.Rd |only oaii-0.3.0/oaii/man/moderation_create_request.Rd |only oaii-0.3.0/oaii/man/moderations_object_request.Rd |only 21 files changed, 39 insertions(+), 66 deletions(-)
Title: UK Flood Estimation
Description: Functions to implement the methods of the Flood Estimation Handbook (FEH), associated updates and the revitalised flood hydrograph model (ReFH). Currently the package uses NRFA peak flow dataset version 12.1. Aside from FEH functionality, further hydrological functions are available. Most of the methods implemented in this package are described in one or more of the following: "Flood Estimation Handbook", Centre for Ecology & Hydrology (1999, ISBN:0 948540 94 X). "Flood Estimation Handbook Supplementary Report No. 1", Kjeldsen (2007, ISBN:0 903741 15 7). "Regional Frequency Analysis - an approach based on L-moments", Hosking & Wallis (1997, ISBN: 978 0 521 01940 8). "Proposal of the extreme rank plot for extreme value analysis: with an emphasis on flood frequency studies", Hammond (2019, <doi:10.2166/nh.2019.157>). "Making better use of local data in flood frequency estimation", Environment Agency (2017, ISBN: 978 1 84911 387 8). "Sampling uncertainty of UK design flood e [...truncated...]
Author: Anthony Hammond
Maintainer: Anthony Hammond <agqhammond@gmail.com>
Diff between UKFE versions 0.3.2 dated 2023-11-05 and 0.3.3 dated 2024-01-21
DESCRIPTION | 6 ++-- MD5 | 16 ++++++------ R/All.R | 69 ++++++++++++++++++++++++++++++++++++---------------- data/NRFAData.rda |binary data/QMEDData.rda |binary man/MonthlyStats.Rd | 2 - man/PoolEst.Rd | 2 - man/QMED.Rd | 2 - man/ReFH.Rd | 2 - 9 files changed, 63 insertions(+), 36 deletions(-)
Title: Global Sensitivity Analysis of Model Outputs and Importance
Measures
Description: A collection of functions for sensitivity analysis of model outputs (factor screening, global sensitivity analysis and robustness analysis), for variable importance measures of data, as well as for interpretability of machine learning models. Most of the functions have to be applied on scalar output, but several functions support multi-dimensional outputs.
Author: Bertrand Iooss, Sebastien Da Veiga, Alexandre Janon and Gilles Pujol, with contributions from Baptiste Broto, Khalid Boumhaout, Laura Clouvel, Thibault Delage, Reda El Amri, Jana Fruth, Laurent Gilquin, Joseph Guillaume, Margot Herin, Marouane Il Idr [...truncated...]
Maintainer: Bertrand Iooss <biooss@yahoo.fr>
Diff between sensitivity versions 1.29.0 dated 2023-08-31 and 1.30.0 dated 2024-01-21
DESCRIPTION | 13 +++++++------ MD5 | 28 ++++++++++++++++------------ NAMESPACE | 9 ++++++++- NEWS | 5 +++++ R/EPtest.R |only R/correlRatio.R | 3 +-- R/johnsonshap.R |only R/pme.R | 2 +- R/src.R | 1 - man/EPtest.Rd |only man/johnson.Rd | 5 ++--- man/johnsonshap.Rd |only man/lmg.Rd | 8 ++++---- man/pcc.Rd | 4 ++-- man/pmvd.Rd | 7 +++---- man/sensitivity-package.Rd | 24 +++++++++++++----------- man/src.Rd | 4 ++-- 17 files changed, 64 insertions(+), 49 deletions(-)
Title: 'NoSQL' Database Connector
Description: Simplified document database access and manipulation,
providing a common API across supported 'NoSQL' databases
'Elasticsearch', 'CouchDB', 'MongoDB' as well as
'SQLite/JSON1', 'PostgreSQL', and 'DuckDB'.
Author: Ralf Herold [aut, cre] ,
Scott Chamberlain [aut] ,
Rich FitzJohn [aut],
Jeroen Ooms [aut]
Maintainer: Ralf Herold <ralf.herold@mailbox.org>
Diff between nodbi versions 0.9.8 dated 2023-09-23 and 0.10.0 dated 2024-01-21
DESCRIPTION | 12 MD5 | 50 NAMESPACE | 4 NEWS.md | 43 R/create.R | 163 +-- R/delete.R | 104 + R/exists.R | 11 R/get.R | 44 R/list.R | 10 R/nodbi-package.R | 27 R/query.R | 2330 ++++++++++++++++++++++++++------------------ R/src_sqlite.R | 26 R/update.R | 292 ++++- R/zzz.R | 356 ++++++ inst/WORDLIST |only inst/js |only man/docdb_create.Rd | 33 man/docdb_delete.Rd | 27 man/docdb_exists.Rd | 20 man/docdb_get.Rd | 15 man/docdb_list.Rd | 12 man/docdb_query.Rd | 85 + man/docdb_update.Rd | 50 man/nodbi-package.Rd | 16 tests/testthat/core-nodbi.R | 244 ++-- tests/testthat/helper.R | 3 26 files changed, 2479 insertions(+), 1498 deletions(-)
Title: Comprehensive Collection of Color Palettes
Description: The choices of color palettes in R can be quite
overwhelming with palettes spread over many packages with many
different API's. This packages aims to collect all color palettes
across the R ecosystem under the same package with a streamlined API.
Author: See AUTHORS file.
Maintainer: Emil Hvitfeldt <emilhhvitfeldt@gmail.com>
Diff between paletteer versions 1.5.0 dated 2022-10-19 and 1.6.0 dated 2024-01-21
DESCRIPTION | 9 LICENSE.note | 48 MD5 | 76 NEWS.md | 10 R/aaa.R | 7 R/completeme.R | 3 R/paletteer_c.R | 2 R/paletteer_c_wrappers.R | 13 R/paletteer_d.R | 2 R/paletteer_dynamic.R | 4 R/sysdata.rda |binary README.md | 158 data/paletteer_packages.rda |binary data/palettes_c_names.rda |binary data/palettes_d.rda |binary data/palettes_d_names.rda |binary data/palettes_dynamic_names.rda |binary inst/CITATION | 4 man/paletteer-package.Rd | 1 man/palettes_d.Rd | 4 man/palettes_d_names.Rd | 4 tests/testthat/_snaps/paletteer_d.md |only tests/testthat/_snaps/vdiffr_palette_check/butterflycolors.svg |only tests/testthat/_snaps/vdiffr_palette_check/fishualize.svg | 2094 - tests/testthat/_snaps/vdiffr_palette_check/ggsci.svg | 1174 tests/testthat/_snaps/vdiffr_palette_check/khroma.svg |18854 +++++----- tests/testthat/_snaps/vdiffr_palette_check/ltc.svg |only tests/testthat/_snaps/vdiffr_palette_check/manu.svg | 263 tests/testthat/_snaps/vdiffr_palette_check/mexbrewer.svg |only tests/testthat/_snaps/vdiffr_palette_check/momacolors.svg |only tests/testthat/_snaps/vdiffr_palette_check/palr.svg | 512 tests/testthat/_snaps/vdiffr_palette_check/prettycols.svg |only tests/testthat/_snaps/vdiffr_palette_check/scico.svg | 8964 ++-- tests/testthat/_snaps/vdiffr_palette_check/taylorswift.svg | 157 tests/testthat/_snaps/vdiffr_palette_check/vangogh.svg |only tests/testthat/_snaps/vdiffr_palette_check/warhol.svg |only tests/testthat/_snaps/vdiffr_palette_check/wesanderson.svg | 258 tests/testthat/test-ggplot2_scales_binned.R | 37 tests/testthat/test-ggplot2_scales_discrete.R | 38 tests/testthat/test-paletteer_c.R | 27 tests/testthat/test-paletteer_c_wrappers.R | 2 tests/testthat/test-paletteer_d.R | 19 tests/testthat/test-paletteer_dynamic.R | 2 43 files changed, 16518 insertions(+), 16228 deletions(-)
Title: Plots for Model Sensitivity and Variable Importance
Description: Draws tornado plots for model sensitivity to univariate changes. Implements methods for many modeling methods including linear models, generalized linear models, survival regression models, and arbitrary machine learning models in the caret package. Also draws variable importance plots.
Author: Rob Carnell [aut, cre]
Maintainer: Rob Carnell <bertcarnell@gmail.com>
Diff between tornado versions 0.1.2 dated 2023-02-12 and 0.1.3 dated 2024-01-21
tornado-0.1.2/tornado/man/figures/censored_section-2.png |only tornado-0.1.3/tornado/DESCRIPTION | 8 tornado-0.1.3/tornado/MD5 | 62 - tornado-0.1.3/tornado/NEWS | 5 tornado-0.1.3/tornado/R/create_endpoints.R | 32 tornado-0.1.3/tornado/R/create_plot_data.R | 4 tornado-0.1.3/tornado/R/importance_glmnet.R | 2 tornado-0.1.3/tornado/R/importance_survreg.R | 2 tornado-0.1.3/tornado/R/plot_importance_plot.R | 373 ++++----- tornado-0.1.3/tornado/R/tornado.R | 4 tornado-0.1.3/tornado/build/vignette.rds |binary tornado-0.1.3/tornado/inst/doc/tornadoVignette.R | 10 tornado-0.1.3/tornado/inst/doc/tornadoVignette.Rmd | 8 tornado-0.1.3/tornado/inst/doc/tornadoVignette.html | 394 ++++------ tornado-0.1.3/tornado/man/figures/censored_coxph_setion-1.png |only tornado-0.1.3/tornado/man/figures/glm_section-1.png |binary tornado-0.1.3/tornado/man/figures/train_section-1.png |binary tornado-0.1.3/tornado/man/importance.cv.glmnet.Rd | 2 tornado-0.1.3/tornado/man/importance.survreg.Rd | 2 tornado-0.1.3/tornado/man/tornado.Rd | 4 tornado-0.1.3/tornado/man/tornado.coxph.Rd | 4 tornado-0.1.3/tornado/man/tornado.cv.glmnet.Rd | 4 tornado-0.1.3/tornado/man/tornado.glm.Rd | 4 tornado-0.1.3/tornado/man/tornado.lm.Rd | 4 tornado-0.1.3/tornado/man/tornado.survreg.Rd | 4 tornado-0.1.3/tornado/man/tornado.train.Rd | 4 tornado-0.1.3/tornado/tests/testthat.R | 8 tornado-0.1.3/tornado/tests/testthat/Rplots.pdf |binary tornado-0.1.3/tornado/tests/testthat/setup-models.R | 2 tornado-0.1.3/tornado/tests/testthat/setup-tornado_train.R | 20 tornado-0.1.3/tornado/tests/testthat/test-create_endpoints.R | 46 + tornado-0.1.3/tornado/tests/testthat/test-tornado_lm.R | 85 -- tornado-0.1.3/tornado/vignettes/tornadoVignette.Rmd | 8 33 files changed, 582 insertions(+), 523 deletions(-)
Title: Data Sets Useful for Modeling Examples
Description: Data sets used for demonstrating or testing model-related
packages are contained in this package.
Author: Max Kuhn [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
Diff between modeldata versions 1.2.0 dated 2023-08-09 and 1.3.0 dated 2024-01-21
DESCRIPTION | 6 +++--- MD5 | 15 +++++++++------ NEWS.md | 4 ++++ R/deliveries.R |only R/taxi.R | 4 ++-- build/partial.rdb |binary data/datalist | 1 + data/deliveries.rda |only man/deliveries.Rd |only man/taxi.Rd | 4 ++-- 10 files changed, 21 insertions(+), 13 deletions(-)
Title: Automatic Processing of Terrestrial-Based Technologies Point
Cloud Data for Forestry Purposes
Description: Process automation of point cloud data derived from terrestrial-based technologies such as Terrestrial Laser Scanner (TLS) or Mobile Laser Scanner. 'FORTLS' enables (i) detection of trees and estimation of tree-level attributes (e.g. diameters and heights), (ii) estimation of stand-level variables (e.g. density, basal area, mean and dominant height), (iii) computation of metrics related to important forest attributes estimated in Forest Inventories at stand-level, and (iv) optimization of plot design for combining TLS data and field measured data. Documentation about 'FORTLS' is described in Molina-Valero et al. (2022, <doi:10.1016/j.envsoft.2022.105337>).
Author: Juan Alberto Molina-Valero [aut, cph, cre],
Adela Martinez-Calvo [aut, com],
Arunima Singh [aut, com],
Gokul Kottilapurath Surendran [aut, com],
Juan Gabriel Alvarez-Gonzalez [aut, ths],
Fernando Montes [aut],
Cesar Perez-Cruzado [aut, ths]
Maintainer: Juan Alberto Molina-Valero <jamolinavalero@gmail.com>
Diff between FORTLS versions 1.3.0 dated 2023-09-11 and 1.4.0 dated 2024-01-21
DESCRIPTION | 22 +- MD5 | 48 +++-- R/PythonFunctions.R |only R/RcppExports.R | 4 R/auxiliary.functions.R | 228 ++++++++++++++++++++++---- R/normalize.R | 11 + R/section.functions.R | 143 ++++++++-------- R/stem.analysis.R | 38 ++++ R/tree.detection.multi.scan.R | 286 ++++++++++++++++++++++----------- R/tree.detection.several.plots.R | 15 + R/tree.detection.single.scan.R | 185 ++++++++++++++++++--- README.md | 21 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/plot_design_optimization.html | 8 inst/doc/tree_level.html | 12 - inst/python |only man/correlations.Rd | 2 man/figures/MICINN_Gob_Web_AEI_2.jpg |only man/figures/logo_ux.jpg |only man/figures/xunta.png |only man/normalize.Rd | 4 man/tree.detection.multi.scan.Rd | 15 + man/tree.detection.several.plots.Rd | 9 - man/tree.detection.single.scan.Rd | 14 + man/ver_point_cloud_double.Rd |only src/RcppExports.cpp | 12 + src/surface_variation_1.3.cpp | 134 +++++++++++++++ 28 files changed, 918 insertions(+), 293 deletions(-)
Title: eXtensible Time Series
Description: Provide for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user level customization and extension, while simplifying cross-class interoperability.
Author: Jeffrey A. Ryan [aut, cph],
Joshua M. Ulrich [cre, aut],
Ross Bennett [ctb],
Corwin Joy [ctb]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>
Diff between xts versions 0.13.1 dated 2023-04-16 and 0.13.2 dated 2024-01-21
xts-0.13.1/xts/inst/tinytest/test-long-vector-support.R |only xts-0.13.2/xts/DESCRIPTION | 9 xts-0.13.2/xts/MD5 | 61 xts-0.13.2/xts/NAMESPACE | 4 xts-0.13.2/xts/NEWS | 27 xts-0.13.2/xts/R/index.R | 2 xts-0.13.2/xts/R/parse8601.R | 2 xts-0.13.2/xts/R/period.apply.R | 42 xts-0.13.2/xts/R/plot.R | 1366 +++++++--------- xts-0.13.2/xts/R/print.R | 21 xts-0.13.2/xts/R/str.R | 3 xts-0.13.2/xts/R/tclass.R | 8 xts-0.13.2/xts/R/toperiod.R | 2 xts-0.13.2/xts/R/tzone.R | 22 xts-0.13.2/xts/R/xts.R | 4 xts-0.13.2/xts/build/vignette.rds |binary xts-0.13.2/xts/inst/doc/xts-faq.R | 8 xts-0.13.2/xts/inst/doc/xts-faq.Rnw | 8 xts-0.13.2/xts/inst/doc/xts-faq.pdf |binary xts-0.13.2/xts/inst/doc/xts.pdf |binary xts-0.13.2/xts/inst/tinytest/test-period.apply.R | 39 xts-0.13.2/xts/inst/tinytest/test-plot.R | 28 xts-0.13.2/xts/inst/tinytest/test-print.R | 6 xts-0.13.2/xts/inst/tinytest/test-tclass.R | 6 xts-0.13.2/xts/man/addPolygon.Rd | 14 xts-0.13.2/xts/man/apply.monthly.Rd | 19 xts-0.13.2/xts/man/period.apply.Rd | 21 xts-0.13.2/xts/man/plot.xts.Rd | 4 xts-0.13.2/xts/man/xts-package.Rd | 7 xts-0.13.2/xts/man/xts.Rd | 2 xts-0.13.2/xts/tests/tinytest.R | 4 xts-0.13.2/xts/vignettes/xts-faq.Rnw | 8 32 files changed, 901 insertions(+), 846 deletions(-)
Title: SQLite Interface for R
Description: Embeds the SQLite database engine in R and provides an
interface compliant with the DBI package. The source for the SQLite
engine and for various extensions in a recent version is included.
System libraries will never be consulted because this package relies
on static linking for the plugins it includes; this also ensures a
consistent experience across all installations.
Author: Kirill Mueller [aut, cre] ,
Hadley Wickham [aut],
David A. James [aut],
Seth Falcon [aut],
D. Richard Hipp [ctb] ,
Dan Kennedy [ctb] ,
Joe Mistachkin [ctb] ,
SQLite Authors [ctb] ,
Liam Healy [ctb] ,
R Consortium [fnd],
RStudio [cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between RSQLite versions 2.3.4 dated 2023-12-07 and 2.3.5 dated 2024-01-21
DESCRIPTION | 16 MD5 | 27 NAMESPACE | 10 NEWS.md | 12 R/SQLite.R | 4 R/dbFetch_SQLiteResult.R | 6 R/db_bind.R | 2 R/export.R | 41 README.md | 2 src/vendor/boost/intrusive/slist.hpp | 4 src/vendor/sqlite3/sqlite3.c | 7935 +++++++++++++++++++++++------------ src/vendor/sqlite3/sqlite3.h | 91 tests/testthat/helper-DBItest.R | 67 tests/testthat/helper-reexport.R |only tests/testthat/test-DBItest.R | 14 15 files changed, 5620 insertions(+), 2611 deletions(-)
Title: An Import Mechanism for R
Description: Alternative mechanism for importing objects from packages
and R modules. The syntax allows for importing multiple objects with a single
command in an expressive way. The import package bridges some of the gap
between using library (or require) and direct (single-object) imports.
Furthermore the imported objects are not placed in the current environment.
Author: Stefan Milton Bache [aut],
Magnus Thor Torfason [aut, cre]
Maintainer: Magnus Thor Torfason <m@zulutime.net>
Diff between import versions 1.3.1 dated 2023-09-23 and 1.3.2 dated 2024-01-21
DESCRIPTION | 6 ++-- MD5 | 16 ++++++------ NEWS.md | 8 ++++++ R/S3.R | 2 - build/vignette.rds |binary inst/doc/import.R | 52 +++++++++++++++++++++--------------------- inst/doc/import.html | 2 - tests/test_import/module_S3.R | 5 ++++ tests/test_import/test_S3.R | 1 9 files changed, 53 insertions(+), 39 deletions(-)
Title: Relational Data Models
Description: Provides tools for working with multiple related
tables, stored as data frames or in a relational database. Multiple
tables (data and metadata) are stored in a compound object, which can
then be manipulated with a pipe-friendly syntax.
Author: Tobias Schieferdecker [aut],
Kirill Mueller [aut, cre] ,
Antoine Fabri [ctb],
Darko Bergant [aut],
Katharina Brunner [ctb],
James Wondrasek [ctb],
Indrajeet Patil [ctb] ,
Maelle Salmon [ctb] ,
energie360° AG [fnd],
cynkra GmbH [fnd, cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between dm versions 1.0.9 dated 2024-01-08 and 1.0.10 dated 2024-01-21
DESCRIPTION | 10 ++-- MD5 | 50 ++++++++++---------- NAMESPACE | 32 ++++++++++++ NEWS.md | 9 +++ R/dm_wrap.R | 4 - R/filter-dm.R | 5 ++ R/flatten.R | 3 - R/reexport.R | 2 inst/doc/dm.html | 4 - inst/doc/howto-dm-copy.html | 4 - inst/doc/howto-dm-db.html | 4 - inst/doc/howto-dm-df.html | 4 - inst/doc/howto-dm-rows.html | 4 - inst/doc/howto-dm-theory.html | 4 - inst/doc/tech-dm-cdm.html | 4 - inst/doc/tech-dm-class.html | 4 - inst/doc/tech-dm-draw.html | 4 - inst/doc/tech-dm-filter.html | 4 - inst/doc/tech-dm-join.html | 4 - inst/doc/tech-dm-low-level.html | 4 - man/reexports.Rd | 4 - tests/testthat/_snaps/standalone-check_suggested.md | 1 tests/testthat/test-db-helpers.R | 4 - tests/testthat/test-learn.R | 22 ++++---- tests/testthat/test-schema.R | 2 tests/testthat/test-standalone-check_suggested.R | 2 26 files changed, 120 insertions(+), 78 deletions(-)
Title: Unimodal Additive Hazards Model
Description: Nonparametric estimation of a unimodal or U-shape covariate effect under additive hazards model.
Author: Yunro Chung [aut, cre]
Maintainer: Yunro Chung <yunro.chung@asu.edu>
Diff between uniah versions 1.1 dated 2022-05-30 and 1.2 dated 2024-01-21
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/plot.uniah.R | 11 ++++++----- man/uniah-package.Rd | 4 ++-- 4 files changed, 15 insertions(+), 14 deletions(-)
Title: Prioritization of Candidate Cancer Subtype Specific Drugs
Description: A systematic biology tool was developed to prioritize cancer subtype-specific drugs by integrating genetic perturbation, drug action, biological pathway, and cancer subtype.
The capabilities of this tool include inferring patient-specific subpathway activity profiles in the context of gene expression profiles with subtype labels, calculating differentially
expressed subpathways based on cultured human cells treated with drugs in the 'cMap' (connectivity map) database, prioritizing cancer subtype specific drugs according to drug-disease
reverse association score based on subpathway, and visualization of results (Castelo (2013) <doi:10.1186/1471-2105-14-7>; Han et al (2019) <doi:10.1093/bioinformatics/btz894>; Lamb and Justin (2006) <doi:10.1126/science.1132939>). Please cite using <doi:10.1093/bioinformatics/btab011>.
Author: Xudong Han,
Junwei Han,
Chonghui Liu
Maintainer: Junwei Han <hanjunwei1981@163.com>
Diff between SubtypeDrug versions 0.1.6 dated 2024-01-10 and 0.1.7 dated 2024-01-21
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 2 -- R/PrioSubtypeDrug.R | 6 ++---- inst/doc/vignette.html | 8 ++++---- 5 files changed, 14 insertions(+), 18 deletions(-)
Title: Short Sprints
Description: Create short sprint acceleration-velocity (AVP) and force-velocity (FVP) profiles
and predict kinematic and kinetic variables using the timing-gate split times, laser or
radar gun data, tether devices data, as well as the data provided by the GPS and LPS
monitoring systems. The modeling method utilized in this package is based on the works of
Furusawa K, Hill AV, Parkinson JL (1927) <doi: 10.1098/rspb.1927.0035>,
Greene PR. (1986) <doi: 10.1016/0025-5564(86)90063-5>,
Chelly SM, Denis C. (2001) <doi: 10.1097/00005768-200102000-00024>,
Clark KP, Rieger RH, Bruno RF, Stearne DJ. (2017) <doi: 10.1519/JSC.0000000000002081>,
Samozino P. (2018) <doi: 10.1007/978-3-319-05633-3_11>,
Samozino P. and Peyrot N., et al (2022) <doi: 10.1111/sms.14097>,
Clavel, P., et al (2023) <doi: 10.1016/j.jbiomech.2023.111602>, and
Jovanovic M. (2023) <doi: 10.1080/10255842.2023.2170713>.
Author: Mladen Jovanovic [aut, cre, cph]
Maintainer: Mladen Jovanovic <coach.mladen.jovanovic@gmail.com>
Diff between shorts versions 3.0.0 dated 2024-01-13 and 3.1.0 dated 2024-01-21
DESCRIPTION | 15 +++++++-------- MD5 | 14 +++++++------- NEWS.md | 6 ++++++ R/model-in-situ.R | 30 +++++++++++++++++++----------- R/model-radar-gun.R | 8 ++++++++ inst/CITATION | 2 +- man/figures/README-unnamed-chunk-20-1.png |binary man/model_functions.Rd | 13 ++++++++++++- 8 files changed, 60 insertions(+), 28 deletions(-)
Title: Reproducible Open Coding Kit
Description: The Reproducible Open Coding Kit ('ROCK', and this package, 'rock')
was developed to facilitate reproducible and open coding, specifically
geared towards qualitative research methods. Although it is a
general-purpose toolkit, three specific applications have been
implemented, specifically an interface to the 'rENA' package that
implements Epistemic Network Analysis ('ENA'), means to process notes
from Cognitive Interviews ('CIs'), and means to work with decentralized
construct taxonomies ('DCTs'). The 'ROCK' and this 'rock' package are described
in the ROCK book <https://rockbook.org> and more information, such as tutorials,
is available at <https://rock.science>.
Author: Gjalt-Jorn Peters [aut, cre] ,
Szilvia Zorgo [aut, ctb]
Maintainer: Gjalt-Jorn Peters <rock@opens.science>
Diff between rock versions 0.6.7 dated 2022-12-13 and 0.8.1 dated 2024-01-21
DESCRIPTION | 25 +- MD5 | 108 +++++---- NAMESPACE | 6 R/aesthetics_to_graph_theme.R |only R/aesthetics_to_regexIndexed_list.R |only R/ci_import_nrm_spec.R | 50 ++++ R/ci_nrm_to_md.R | 59 +++-- R/clean_source.R | 16 - R/codebook_to_pdf.R | 2 R/collect_coded_fragments.R | 10 R/convert_df_to_source.R | 58 ++++- R/expand_attributes.R | 23 +- R/form_to_rmd_template.R | 6 R/generate_uids.R | 20 + R/get_state_transition_df.R |only R/get_state_transition_dot.R |only R/get_state_transition_table.R |only R/mask_utterances.R | 10 R/merge_sources.R | 47 ++-- R/merge_utterances_and_attributes.R |only R/opts.R | 40 ++- R/parse_source.R | 315 ++++++++++++++++++--------- R/parse_sources.R | 337 +++++++++++++++++------------ R/parsed_sources_to_ena_network.R | 113 +++++---- R/prereg_initialize.R | 8 R/qna_to_ltm.R |only R/recode_merge.R | 19 - R/rock-package.R |only R/split_long_lines.R |only R/sync_streams.R | 139 ++++++++++-- R/syncing_df_expand.R | 19 + R/syncing_vector_compress.R | 2 R/syncing_vector_expand.R | 15 + R/wordwrap_source.R |only README.md | 15 - build/vignette.rds |binary inst/CITATION | 32 +- inst/doc/introduction_to_rock.Rmd | 347 ------------------------------ inst/doc/introduction_to_rock.pdf |binary inst/extdata/example-1.rock | 22 + inst/extdata/network-example-1.rock |only inst/extdata/network-example-2.rock |only inst/extdata/simple-rpe-example.rock | 390 +++++++++++++++++----------------- inst/extdata/state-example-1.rock |only man/cleaning_sources.Rd | 93 +++++++- man/codebook_to_pdf.Rd | 2 man/convert_to_source.Rd | 24 +- man/expand_attributes.Rd | 23 +- man/generate_uids.Rd | 20 + man/get_state_transition_df.Rd |only man/get_state_transition_dot.Rd |only man/get_state_transition_table.Rd |only man/merge_sources.Rd | 7 man/parsed_sources_to_ena_network.Rd | 3 man/parsing_sources.Rd | 25 +- man/prereg_initialize.Rd | 8 man/qna_to_tlm.Rd |only man/rmd_templates.Rd | 6 man/split_long_lines.Rd |only tests/testthat/test-anchors.R | 5 tests/testthat/test-deductive-codes.R | 5 tests/testthat/test-rock-general.R | 30 ++ tests/testthat/test-rpe.R | 5 vignettes/introduction_to_rock.Rmd | 347 ------------------------------ 64 files changed, 1434 insertions(+), 1422 deletions(-)
Title: Build a Metric Subspaces Data Model for a Data Source
Description: Neural networks are applied to create a density value function which approximates density values for a data source. The trained neural network is analyzed for different levels. For each level metric subspaces with density values above a level are determined. The obtained set of metric subspaces and the trained neural network are assembled into a data model. A prerequisite is the definition of a data source, the generation of generative data and the calculation of density values. These tasks are executed using package 'ganGenerativeData' <https://cran.r-project.org/package=ganGenerativeData>.
Author: Werner Mueller
Maintainer: Werner Mueller <werner.mueller5@chello.at>
Diff between ganDataModel versions 1.1.5 dated 2023-12-13 and 1.1.6 dated 2024-01-21
DESCRIPTION | 8 +-- MD5 | 6 +- man/ganDataModel-package.Rd | 13 +++--- src/dmInt.cpp | 94 +++++++++++++++++++++++++++++++++++++++++++- 4 files changed, 107 insertions(+), 14 deletions(-)
Title: Event Prediction
Description: Predicts enrollment and events at the design or analysis stage using specified enrollment and time-to-event models through simulations.
Author: Kaifeng Lu [aut, cre]
Maintainer: Kaifeng Lu <kaifenglu@gmail.com>
Diff between eventPred versions 0.2.3 dated 2023-12-16 and 0.2.4 dated 2024-01-21
DESCRIPTION | 14 +- MD5 | 53 +++++++--- NAMESPACE | 2 NEWS.md | 88 ++++++++++++++++ R/eventPred-package.R | 4 R/fitDropout.R | 33 ++++-- R/fitEnrollment.R | 4 R/fitEvent.R | 34 ++++-- R/getPrediction.R | 173 ++++++++++++++++++++------------- R/predictEnrollment.R | 74 +++++++------- R/predictEvent.R | 246 +++++++++++++++++++++++++++++++++++++---------- R/runShinyApp.R |only R/utilities.R | 66 ++++++------ build |only data/finalData.rda |binary inst |only man/eventPred-package.Rd | 3 man/pwexpreg.Rd | 20 +-- man/runShinyApp.Rd |only vignettes |only 20 files changed, 574 insertions(+), 240 deletions(-)
Title: Test Functions for Simulation Experiments and Evaluating
Optimization and Emulation Algorithms
Description: Test functions are often used to test computer code.
They are used in optimization to test algorithms and in
metamodeling to evaluate model predictions. This package provides
test functions that can be used for any purpose.
Author: Collin Erickson
Maintainer: Collin Erickson <collinberickson@gmail.com>
Diff between TestFunctions versions 0.2.0 dated 2017-05-09 and 0.2.1 dated 2024-01-21
DESCRIPTION | 15 MD5 | 62 ++ NAMESPACE | 53 ++ NEWS.md | 8 R/TF_bananagramacy2Dexp.R |only R/TF_gramacy2Dexp.R |only R/TF_gramacy6D.R |only R/funcprofile.R |only R/functions1.R | 215 ++++++++- R/functions2.R |only R/functionsMultiOut1.R |only R/subtractlm.R |only R/test_func_apply.R | 44 ++ README.md | 40 + build/vignette.rds |binary inst/doc/AnIntroductiontoTestFunctions.R | 12 inst/doc/AnIntroductiontoTestFunctions.Rmd | 8 inst/doc/AnIntroductiontoTestFunctions.html | 466 +++++++++++++++++---- man/TF_OTL_Circuit.Rd | 110 ++--- man/TF_SWNExpCos.Rd |only man/TF_bananagramacy2Dexp.Rd |only man/TF_bananatimesgramacy2Dexp.Rd |only man/TF_beambending.Rd |only man/TF_chengsandu.Rd |only man/TF_gramacy2Dexp.Rd |only man/TF_gramacy2Dexp3hole.Rd |only man/TF_gramacy6D.Rd |only man/TF_levytilt.Rd |only man/TF_logistic.Rd |only man/TF_logistic15.Rd |only man/TF_logistic_plateau.Rd |only man/TF_steelcolumnstress.Rd |only man/TF_vertigrad.Rd |only man/TF_vertigrad_grad.Rd |only man/TF_wingweight.Rd | 3 man/TF_winkel.Rd |only man/funcprofile.Rd |only man/nsin.Rd | 2 man/standard_test_func.Rd | 10 man/subtractlm.Rd |only man/test_func_apply.Rd | 612 +++++++++++++++++++--------- man/test_func_applyMO.Rd |only tests |only tools/README-bananacont-1.png |binary vignettes/AnIntroductiontoTestFunctions.Rmd | 8 45 files changed, 1274 insertions(+), 394 deletions(-)
Title: Interface for the 'QuickJS' Lightweight 'JavaScript' Engine
Description: An 'R' interface to the 'QuickJS' portable 'JavaScript' engine.
The engine is bundled entirely within the package, requiring no external system
dependencies beyond a 'C' compiler.
Author: Andrew R. Johnson [aut, cre] ,
Fabrice Bellard [ctb, cph] ,
Charlie Gordon [ctb, cph]
Maintainer: Andrew R. Johnson <andrew.johnson@arjohnsonau.com>
Diff between QuickJSR versions 1.0.9 dated 2023-12-18 and 1.1.0 dated 2024-01-21
QuickJSR-1.0.9/QuickJSR/inst |only QuickJSR-1.1.0/QuickJSR/DESCRIPTION | 12 QuickJSR-1.1.0/QuickJSR/MD5 | 100 QuickJSR-1.1.0/QuickJSR/NAMESPACE | 1 QuickJSR-1.1.0/QuickJSR/NEWS.md | 20 QuickJSR-1.1.0/QuickJSR/R/flags.R | 25 QuickJSR-1.1.0/QuickJSR/R/quickjsr-package.R | 3 QuickJSR-1.1.0/QuickJSR/R/utils.R | 12 QuickJSR-1.1.0/QuickJSR/man/QuickJSR-package.Rd | 19 QuickJSR-1.1.0/QuickJSR/man/cxxflags.Rd | 3 QuickJSR-1.1.0/QuickJSR/man/quickjs_version.Rd |only QuickJSR-1.1.0/QuickJSR/src/Makevars | 25 QuickJSR-1.1.0/QuickJSR/src/quickjs/Changelog |only QuickJSR-1.1.0/QuickJSR/src/quickjs/LICENSE |only QuickJSR-1.1.0/QuickJSR/src/quickjs/Makefile |only QuickJSR-1.1.0/QuickJSR/src/quickjs/TODO |only QuickJSR-1.1.0/QuickJSR/src/quickjs/VERSION |only QuickJSR-1.1.0/QuickJSR/src/quickjs/cutils.c | 7 QuickJSR-1.1.0/QuickJSR/src/quickjs/cutils.h |only QuickJSR-1.1.0/QuickJSR/src/quickjs/doc |only QuickJSR-1.1.0/QuickJSR/src/quickjs/examples |only QuickJSR-1.1.0/QuickJSR/src/quickjs/libbf.c | 561 - QuickJSR-1.1.0/QuickJSR/src/quickjs/libbf.h |only QuickJSR-1.1.0/QuickJSR/src/quickjs/libregexp-opcode.h |only QuickJSR-1.1.0/QuickJSR/src/quickjs/libregexp.c | 275 QuickJSR-1.1.0/QuickJSR/src/quickjs/libregexp.h |only QuickJSR-1.1.0/QuickJSR/src/quickjs/libunicode-table.h |only QuickJSR-1.1.0/QuickJSR/src/quickjs/libunicode.c | 435 + QuickJSR-1.1.0/QuickJSR/src/quickjs/libunicode.h |only QuickJSR-1.1.0/QuickJSR/src/quickjs/list.h |only QuickJSR-1.1.0/QuickJSR/src/quickjs/qjs.c |only QuickJSR-1.1.0/QuickJSR/src/quickjs/qjsc.c |only QuickJSR-1.1.0/QuickJSR/src/quickjs/qjscalc.js |only QuickJSR-1.1.0/QuickJSR/src/quickjs/quickjs-atom.h |only QuickJSR-1.1.0/QuickJSR/src/quickjs/quickjs-libc.c | 302 - QuickJSR-1.1.0/QuickJSR/src/quickjs/quickjs-libc.h |only QuickJSR-1.1.0/QuickJSR/src/quickjs/quickjs-opcode.h |only QuickJSR-1.1.0/QuickJSR/src/quickjs/quickjs.c | 4628 ++++++++++------ QuickJSR-1.1.0/QuickJSR/src/quickjs/quickjs.h |only QuickJSR-1.1.0/QuickJSR/src/quickjs/readme.txt |only QuickJSR-1.1.0/QuickJSR/src/quickjs/release.sh |only QuickJSR-1.1.0/QuickJSR/src/quickjs/repl.js |only QuickJSR-1.1.0/QuickJSR/src/quickjs/run-test262.c |only QuickJSR-1.1.0/QuickJSR/src/quickjs/test262.conf |only QuickJSR-1.1.0/QuickJSR/src/quickjs/test262_errors.txt |only QuickJSR-1.1.0/QuickJSR/src/quickjs/test262o.conf |only QuickJSR-1.1.0/QuickJSR/src/quickjs/test262o_errors.txt |only QuickJSR-1.1.0/QuickJSR/src/quickjs/tests |only QuickJSR-1.1.0/QuickJSR/src/quickjs/unicode_download.sh |only QuickJSR-1.1.0/QuickJSR/src/quickjs/unicode_gen.c |only QuickJSR-1.1.0/QuickJSR/src/quickjs/unicode_gen_def.h |only 51 files changed, 4234 insertions(+), 2194 deletions(-)
Title: Pre-Commit Hooks
Description: Useful git hooks for R building on top of the multi-language
framework 'pre-commit' for hook management. This package provides git
hooks for common tasks like formatting files with 'styler' or spell
checking as well as wrapper functions to access the 'pre-commit'
executable.
Author: Lorenz Walthert
Maintainer: Lorenz Walthert <lorenz.walthert@icloud.com>
Diff between precommit versions 0.3.2 dated 2022-07-01 and 0.4.0 dated 2024-01-21
precommit-0.3.2/precommit/man/extract_diff_root.Rd |only precommit-0.4.0/precommit/DESCRIPTION | 18 precommit-0.4.0/precommit/MD5 | 135 +++--- precommit-0.4.0/precommit/NAMESPACE | 1 precommit-0.4.0/precommit/NEWS.md | 112 ++++- precommit-0.4.0/precommit/R/cache.R | 6 precommit-0.4.0/precommit/R/call.R | 4 precommit-0.4.0/precommit/R/config.R | 2 precommit-0.4.0/precommit/R/exec.R | 3 precommit-0.4.0/precommit/R/install.R | 18 precommit-0.4.0/precommit/R/release.R | 46 +- precommit-0.4.0/precommit/R/roxygen2.R | 121 +----- precommit-0.4.0/precommit/R/setup.R | 2 precommit-0.4.0/precommit/R/testing.R | 30 + precommit-0.4.0/precommit/R/utils.R | 27 + precommit-0.4.0/precommit/README.md | 18 precommit-0.4.0/precommit/build/vignette.rds |binary precommit-0.4.0/precommit/inst/doc/FAQ.R | 2 precommit-0.4.0/precommit/inst/doc/FAQ.html | 130 +++--- precommit-0.4.0/precommit/inst/doc/available-hooks.R | 6 precommit-0.4.0/precommit/inst/doc/available-hooks.Rmd | 86 ++++ precommit-0.4.0/precommit/inst/doc/available-hooks.html | 93 ++++ precommit-0.4.0/precommit/inst/doc/ci.html | 136 +++--- precommit-0.4.0/precommit/inst/doc/hook-order.R | 2 precommit-0.4.0/precommit/inst/doc/hook-order.Rmd | 25 - precommit-0.4.0/precommit/inst/doc/hook-order.html | 46 +- precommit-0.4.0/precommit/inst/doc/precommit.R | 4 precommit-0.4.0/precommit/inst/doc/precommit.html | 146 +++---- precommit-0.4.0/precommit/inst/doc/testing.R | 2 precommit-0.4.0/precommit/inst/doc/testing.html | 14 precommit-0.4.0/precommit/inst/doc/why-use-hooks.html | 14 precommit-0.4.0/precommit/inst/hooks/exported/codemeta-description-updated.R | 16 precommit-0.4.0/precommit/inst/hooks/exported/deps-in-desc.R | 9 precommit-0.4.0/precommit/inst/hooks/exported/lintr.R | 2 precommit-0.4.0/precommit/inst/hooks/exported/no-print-statement.R |only precommit-0.4.0/precommit/inst/hooks/exported/pkgdown.R |only precommit-0.4.0/precommit/inst/hooks/exported/readme-rmd-rendered.R | 1 precommit-0.4.0/precommit/inst/hooks/exported/roxygenize.R | 14 precommit-0.4.0/precommit/inst/hooks/exported/spell-check.R | 4 precommit-0.4.0/precommit/inst/hooks/exported/style-files.R | 2 precommit-0.4.0/precommit/inst/hooks/exported/use-tidy-description.R | 20 + precommit-0.4.0/precommit/inst/pre-commit-config-pkg.yaml | 7 precommit-0.4.0/precommit/inst/pre-commit-config-proj.yaml | 4 precommit-0.4.0/precommit/inst/pre-commit-gha.yaml | 2 precommit-0.4.0/precommit/inst/pre-commit-hooks.yaml | 32 + precommit-0.4.0/precommit/inst/update-ppm-url.R |only precommit-0.4.0/precommit/inst/update-renv-prepare.R |only precommit-0.4.0/precommit/man/communicate_captured_call.Rd |only precommit-0.4.0/precommit/man/diff_requires_run_roxygenize.Rd | 5 precommit-0.4.0/precommit/man/dirs_R.cache.Rd | 1 precommit-0.4.0/precommit/man/git_init.Rd | 3 precommit-0.4.0/precommit/man/local_test_setup.Rd | 4 precommit-0.4.0/precommit/man/may_require_permanent_cache.Rd | 7 precommit-0.4.0/precommit/man/precommit_docopt.Rd |only precommit-0.4.0/precommit/man/robust_purl.Rd | 1 precommit-0.4.0/precommit/man/roxygen_assert_additional_dependencies.Rd | 1 precommit-0.4.0/precommit/man/roxygenize_with_cache.Rd | 3 precommit-0.4.0/precommit/man/run_test.Rd | 6 precommit-0.4.0/precommit/man/run_test_impl.Rd | 6 precommit-0.4.0/precommit/man/update_rev_in_config.Rd | 2 precommit-0.4.0/precommit/man/use_ci.Rd | 2 precommit-0.4.0/precommit/man/use_precommit.Rd | 2 precommit-0.4.0/precommit/tests/testthat/in/_pkgdown-articles.yml |only precommit-0.4.0/precommit/tests/testthat/in/_pkgdown-index-articles.yml |only precommit-0.4.0/precommit/tests/testthat/in/_pkgdown-index.yml |only precommit-0.4.0/precommit/tests/testthat/in/autoupdate.Rd |only precommit-0.4.0/precommit/tests/testthat/in/no-print-statement-fail.R |only precommit-0.4.0/precommit/tests/testthat/in/no-print-statement-success.R |only precommit-0.4.0/precommit/tests/testthat/in/pkgdown.Rmd |only precommit-0.4.0/precommit/tests/testthat/reference-objects/pre-commit-config.yaml | 2 precommit-0.4.0/precommit/tests/testthat/test-conda.R | 3 precommit-0.4.0/precommit/tests/testthat/test-docopt.R |only precommit-0.4.0/precommit/tests/testthat/test-hook-roxygenize.R | 23 - precommit-0.4.0/precommit/tests/testthat/test-hooks.R | 196 +++++++++- precommit-0.4.0/precommit/vignettes/available-hooks.Rmd | 86 ++++ precommit-0.4.0/precommit/vignettes/hook-order.Rmd | 25 - 76 files changed, 1177 insertions(+), 563 deletions(-)
Title: Tools for Supply Chain Management, Demand and Supply Planning
Description: Perform flexible and quick calculations for Demand and Supply Planning, such as projected inventories and coverages, as well as replenishment plan. For any time bucket, daily, weekly or monthly, and any granularity level, product or group of products.
Author: Nicolas Nguyen [aut, cre]
Maintainer: Nicolas Nguyen <nikonguyen@yahoo.fr>
Diff between planr versions 0.1.1 dated 2023-09-16 and 0.3.0 dated 2024-01-21
DESCRIPTION | 16 +++---- MD5 | 22 +++++++-- NAMESPACE | 4 + R/const_dmd.R |only R/data.R | 55 ++++++++++++++++++++++++ R/month_to_week.R |only README.md | 80 ++++++++++++++++++++++++------------ data/demo_const_dmd.rda |only data/demo_monthly_dmd.rda |only inst/doc/get_started.html | 24 +++++----- inst/doc/user_cases.html | 52 +++++++++++------------ man/const_dmd.Rd |only man/demo_const_dmd.Rd |only man/demo_monthly_dmd.Rd |only man/month_to_week.Rd |only tests/testthat/test-const_dmd.R |only tests/testthat/test-month_to_week.R |only 17 files changed, 176 insertions(+), 77 deletions(-)
Title: Explainers for Regression Models in HIV Research
Description: A dedicated viral-explainer model tool designed to empower researchers in the field of HIV research, particularly in viral load and CD4 (Cluster of Differentiation 4) lymphocytes regression modeling. Drawing inspiration from the 'tidymodels' framework for rigorous model building of Max Kuhn and Hadley Wickham (2020) <https://www.tidymodels.org>, and the 'DALEXtra' tool for explainability by Przemyslaw Biecek (2020) <arXiv:2009.13248>. It aims to facilitate interpretable and reproducible research in biostatistics and computational biology for the benefit of understanding HIV dynamics.
Author: Juan Pablo Acuna Gonzalez [aut, cre]
Maintainer: Juan Pablo Acuna Gonzalez <22253567@uagro.mx>
Diff between viralx versions 1.1.0 dated 2023-09-13 and 1.2.0 dated 2024-01-21
DESCRIPTION | 10 ++++++---- MD5 | 29 ++++++++++++++++++++++++++--- NAMESPACE | 6 ++++++ R/glob_knn_vis.R |only R/train2-data.R |only R/viralx_knn.R |only R/viralx_knn_glob.R |only R/viralx_knn_shap.R |only R/viralx_knn_vis.R |only R/viralx_nn.R | 4 +++- data |only man/glob_knn_vis.Rd |only man/train2.Rd |only man/viralx_knn.Rd |only man/viralx_knn_glob.Rd |only man/viralx_knn_shap.Rd |only man/viralx_knn_vis.Rd |only tests/testthat/_snaps/glob_knn_vis |only tests/testthat/_snaps/viralx_knn.md |only tests/testthat/_snaps/viralx_knn_glob.md |only tests/testthat/_snaps/viralx_knn_shap.md |only tests/testthat/_snaps/viralx_knn_vis |only tests/testthat/test-glob_knn_vis.R |only tests/testthat/test-viralx_knn.R |only tests/testthat/test-viralx_knn_glob.R |only tests/testthat/test-viralx_knn_shap.R |only tests/testthat/test-viralx_knn_vis.R |only 27 files changed, 41 insertions(+), 8 deletions(-)
Title: Viral Load and CD4 Lymphocytes Regression Models
Description: Provides a comprehensive framework for building, evaluating, and visualizing regression models for analyzing viral load and CD4 (Cluster of Differentiation 4) lymphocytes data. It leverages the principles of the tidymodels ecosystem of Max Kuhn and Hadley Wickham (2020) <https://www.tidymodels.org> to offer a user-friendly experience in model development. This package includes functions for data preprocessing, feature engineering, model training, tuning, and evaluation, along with visualization tools to enhance the interpretation of model results. It is specifically designed for researchers in biostatistics, computational biology, and HIV research who aim to perform reproducible and rigorous analyses to gain insights into disease dynamics. The main focus is on improving the understanding of the relationships between viral load, CD4 lymphocytes, and other relevant covariates to contribute to HIV research and the visibility of vulnerable seropositive populations.
Author: Juan Pablo Acuna Gonzalez [aut, cre]
Maintainer: Juan Pablo Acuna Gonzalez <22253567@uagro.mx>
Diff between viralmodels versions 1.1.0 dated 2023-09-29 and 1.2.0 dated 2024-01-21
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 2 +- R/viralmodel.R | 4 ++-- R/viraltab.R | 6 +++--- R/viralvis.R | 4 ++-- 6 files changed, 17 insertions(+), 17 deletions(-)
Title: Applicability Domain Methods of Viral Load and CD4 Lymphocytes
Description: Provides methods for assessing the applicability domain of models that predict viral load and CD4 (Cluster of Differentiation 4) lymphocyte counts. These methods help determine the extent of extrapolation when making predictions.
Author: Juan Pablo Acuna Gonzalez [aut, cre]
Maintainer: Juan Pablo Acuna Gonzalez <22253567@uagro.mx>
Diff between viraldomain versions 0.0.2 dated 2023-10-09 and 0.0.3 dated 2024-01-21
viraldomain-0.0.2/viraldomain/R/mars_domain_plot.R |only viraldomain-0.0.2/viraldomain/R/nn_domain_plot.R |only viraldomain-0.0.2/viraldomain/man/mars_domain_plot.Rd |only viraldomain-0.0.2/viraldomain/man/nn_domain_plot.Rd |only viraldomain-0.0.2/viraldomain/tests/testthat/_snaps/mars_domain_plot |only viraldomain-0.0.2/viraldomain/tests/testthat/_snaps/nn_domain_plot |only viraldomain-0.0.2/viraldomain/tests/testthat/test-mars_domain_plot.R |only viraldomain-0.0.2/viraldomain/tests/testthat/test-nn_domain_plot.R |only viraldomain-0.0.3/viraldomain/DESCRIPTION | 10 +-- viraldomain-0.0.3/viraldomain/MD5 | 31 ++++++---- viraldomain-0.0.3/viraldomain/NAMESPACE | 6 + viraldomain-0.0.3/viraldomain/R/knn_domain_score.R |only viraldomain-0.0.3/viraldomain/R/normalized_domain_plot.R |only viraldomain-0.0.3/viraldomain/R/sero-data.R | 4 - viraldomain-0.0.3/viraldomain/R/simple_domain_plot.R |only viraldomain-0.0.3/viraldomain/R/train-data.R |only viraldomain-0.0.3/viraldomain/data/train.rda |only viraldomain-0.0.3/viraldomain/man/knn_domain_score.Rd |only viraldomain-0.0.3/viraldomain/man/normalized_domain_plot.Rd |only viraldomain-0.0.3/viraldomain/man/sero.Rd | 4 - viraldomain-0.0.3/viraldomain/man/simple_domain_plot.Rd |only viraldomain-0.0.3/viraldomain/man/train.Rd |only viraldomain-0.0.3/viraldomain/tests/testthat/_snaps/knn_domain_score.md |only viraldomain-0.0.3/viraldomain/tests/testthat/_snaps/normalized_domain_plot |only viraldomain-0.0.3/viraldomain/tests/testthat/_snaps/simple_domain_plot |only viraldomain-0.0.3/viraldomain/tests/testthat/test-knn_domain_score.R |only viraldomain-0.0.3/viraldomain/tests/testthat/test-normalized_domain_plot.R |only viraldomain-0.0.3/viraldomain/tests/testthat/test-simple_domain_plot.R |only 28 files changed, 32 insertions(+), 23 deletions(-)
Title: R Interface to the 'Protocol Buffers' 'API' (Version 2 or 3)
Description: Protocol Buffers are a way of encoding structured data in an
efficient yet extensible format. Google uses Protocol Buffers for almost all
of its internal 'RPC' protocols and file formats. Additional documentation
is available in two included vignettes one of which corresponds to our 'JSS'
paper (2016, <doi:10.18637/jss.v071.i02>. A sufficiently recent version of
'Protocol Buffers' library is required; currently version 3.3.0 from 2017
is the stated minimum.
Author: Romain Francois, Dirk Eddelbuettel, Murray Stokely and Jeroen Ooms
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RProtoBuf versions 0.4.21 dated 2023-12-13 and 0.4.22 dated 2024-01-21
ChangeLog | 11 +++++++++++ DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- configure | 18 +++++++++--------- configure.ac | 4 ++-- inst/doc/RProtoBuf-intro.pdf |binary inst/doc/RProtoBuf-paper.pdf |binary inst/doc/RProtoBuf-quickref.pdf |binary src/Makevars.ucrt | 6 +++++- 9 files changed, 39 insertions(+), 24 deletions(-)
Title: Tools for Reading, Writing, Viewing and Manipulating CIFTI Files
Description: CIFTI files contain brain imaging data in "grayordinates," which
represent the gray matter as cortical surface vertices (left and right) and
subcortical voxels (cerebellum, basal ganglia, and other deep gray matter).
'ciftiTools' provides a unified environment for reading, writing,
visualizing and manipulating CIFTI-format data. It supports the "dscalar,"
"dlabel," and "dtseries" intents. Grayordinate data is read in as a "xifti"
object, which is structured for convenient access to the data and metadata,
and includes support for surface geometry files to enable
spatially-dependent functionality such as static or interactive
visualizations and smoothing.
Author: Amanda Mejia [aut, cre],
Damon Pham [aut] ,
John Muschelli [ctb]
Maintainer: Amanda Mejia <mandy.mejia@gmail.com>
Diff between ciftiTools versions 0.12.2 dated 2023-08-15 and 0.13.4 dated 2024-01-21
ciftiTools-0.12.2/ciftiTools/R/apply_parc.R |only ciftiTools-0.12.2/ciftiTools/R/edit_mask.R |only ciftiTools-0.12.2/ciftiTools/R/parc_borders.R |only ciftiTools-0.12.2/ciftiTools/man/resamp_area_Param.Rd |only ciftiTools-0.12.2/ciftiTools/man/resamp_area_noOG_Param.Rd |only ciftiTools-0.12.2/ciftiTools/man/roxygen |only ciftiTools-0.13.4/ciftiTools/DESCRIPTION | 8 ciftiTools-0.13.4/ciftiTools/MD5 | 264 +++---- ciftiTools-0.13.4/ciftiTools/NAMESPACE | 11 ciftiTools-0.13.4/ciftiTools/NEWS.md | 22 ciftiTools-0.13.4/ciftiTools/R/add_surf.R | 7 ciftiTools-0.13.4/ciftiTools/R/apply_xifti.R | 2 ciftiTools-0.13.4/ciftiTools/R/as.gifti.R | 4 ciftiTools-0.13.4/ciftiTools/R/as.xifti.R | 18 ciftiTools-0.13.4/ciftiTools/R/ciftiTools-package.R | 15 ciftiTools-0.13.4/ciftiTools/R/combine_xifti.R | 4 ciftiTools-0.13.4/ciftiTools/R/convert_xifti.R | 247 ++++-- ciftiTools-0.13.4/ciftiTools/R/edit_mask_surf.R |only ciftiTools-0.13.4/ciftiTools/R/even_vert_samp.R | 1 ciftiTools-0.13.4/ciftiTools/R/info_cifti.R | 13 ciftiTools-0.13.4/ciftiTools/R/is.xifti.R | 2 ciftiTools-0.13.4/ciftiTools/R/load_parc.R | 5 ciftiTools-0.13.4/ciftiTools/R/load_surf.R | 1 ciftiTools-0.13.4/ciftiTools/R/make_xifti.R | 39 - ciftiTools-0.13.4/ciftiTools/R/make_xifti_components.R | 12 ciftiTools-0.13.4/ciftiTools/R/merge_xifti.R | 2 ciftiTools-0.13.4/ciftiTools/R/move_mwall.R | 3 ciftiTools-0.13.4/ciftiTools/R/newdata_xifti.R | 2 ciftiTools-0.13.4/ciftiTools/R/parc_utils.R |only ciftiTools-0.13.4/ciftiTools/R/read_cifti.R | 6 ciftiTools-0.13.4/ciftiTools/R/read_cifti_flat.R | 4 ciftiTools-0.13.4/ciftiTools/R/read_cifti_separate.R | 2 ciftiTools-0.13.4/ciftiTools/R/read_surf.R | 10 ciftiTools-0.13.4/ciftiTools/R/read_xifti2.R | 33 ciftiTools-0.13.4/ciftiTools/R/remap_cifti.R |only ciftiTools-0.13.4/ciftiTools/R/remap_gifti.R |only ciftiTools-0.13.4/ciftiTools/R/remove_xifti.R | 2 ciftiTools-0.13.4/ciftiTools/R/resample_cifti.R | 7 ciftiTools-0.13.4/ciftiTools/R/resample_cifti_components.R | 57 + ciftiTools-0.13.4/ciftiTools/R/resample_cifti_from_template.R | 5 ciftiTools-0.13.4/ciftiTools/R/resample_gifti.R | 119 +-- ciftiTools-0.13.4/ciftiTools/R/resample_surf.R | 2 ciftiTools-0.13.4/ciftiTools/R/rotate_surf.R | 2 ciftiTools-0.13.4/ciftiTools/R/rox_args_docs.R | 42 - ciftiTools-0.13.4/ciftiTools/R/scale_xifti.R | 2 ciftiTools-0.13.4/ciftiTools/R/select_xifti.R | 2 ciftiTools-0.13.4/ciftiTools/R/separate_cifti.R | 356 ++++++---- ciftiTools-0.13.4/ciftiTools/R/set_names_xifti.R | 2 ciftiTools-0.13.4/ciftiTools/R/smooth_cifti.R | 5 ciftiTools-0.13.4/ciftiTools/R/smooth_gifti.R | 1 ciftiTools-0.13.4/ciftiTools/R/surf_area.R |only ciftiTools-0.13.4/ciftiTools/R/template_xifti.R | 8 ciftiTools-0.13.4/ciftiTools/R/transform_xifti.R | 2 ciftiTools-0.13.4/ciftiTools/R/utils_color.R | 12 ciftiTools-0.13.4/ciftiTools/R/utils_surf.R | 4 ciftiTools-0.13.4/ciftiTools/R/utils_volume.R | 93 +- ciftiTools-0.13.4/ciftiTools/R/utils_xifti.R | 13 ciftiTools-0.13.4/ciftiTools/R/view_comp.R | 2 ciftiTools-0.13.4/ciftiTools/R/view_surf.R | 3 ciftiTools-0.13.4/ciftiTools/R/view_xifti.R | 141 ++- ciftiTools-0.13.4/ciftiTools/R/view_xifti_surface.R | 10 ciftiTools-0.13.4/ciftiTools/R/view_xifti_volume.R | 15 ciftiTools-0.13.4/ciftiTools/R/write_cifti.R | 7 ciftiTools-0.13.4/ciftiTools/R/write_gifti.R | 4 ciftiTools-0.13.4/ciftiTools/R/write_nifti.R | 4 ciftiTools-0.13.4/ciftiTools/R/write_xifti2.R | 84 +- ciftiTools-0.13.4/ciftiTools/README.md | 59 + ciftiTools-0.13.4/ciftiTools/man/ROY_BIG_BL.Rd | 7 ciftiTools-0.13.4/ciftiTools/man/add_surf.Rd | 27 ciftiTools-0.13.4/ciftiTools/man/apply_parc.Rd | 56 + ciftiTools-0.13.4/ciftiTools/man/apply_xifti.Rd | 12 ciftiTools-0.13.4/ciftiTools/man/area_original_Param.Rd |only ciftiTools-0.13.4/ciftiTools/man/area_target_Param.Rd |only ciftiTools-0.13.4/ciftiTools/man/as.metric_gifti.Rd | 4 ciftiTools-0.13.4/ciftiTools/man/as.xifti.Rd | 20 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ciftiTools-0.13.4/ciftiTools/man/mask_surf.Rd | 16 ciftiTools-0.13.4/ciftiTools/man/merge_xifti.Rd | 12 ciftiTools-0.13.4/ciftiTools/man/move_to_mwall.Rd | 19 ciftiTools-0.13.4/ciftiTools/man/newdata_xifti.Rd | 12 ciftiTools-0.13.4/ciftiTools/man/original_fnames_Param_remapped.Rd |only ciftiTools-0.13.4/ciftiTools/man/parc_add_subcortex.Rd |only ciftiTools-0.13.4/ciftiTools/man/parc_borders.Rd | 13 ciftiTools-0.13.4/ciftiTools/man/parc_mean_mat.Rd |only ciftiTools-0.13.4/ciftiTools/man/parc_vals_to_xifti.Rd |only ciftiTools-0.13.4/ciftiTools/man/read_cifti.Rd | 23 ciftiTools-0.13.4/ciftiTools/man/read_cifti_flat.Rd | 4 ciftiTools-0.13.4/ciftiTools/man/read_cifti_separate.Rd | 12 ciftiTools-0.13.4/ciftiTools/man/read_surf.Rd | 13 ciftiTools-0.13.4/ciftiTools/man/read_xifti2.Rd | 14 ciftiTools-0.13.4/ciftiTools/man/remap_cifti.Rd |only ciftiTools-0.13.4/ciftiTools/man/remap_cifti_wrapper.Rd |only ciftiTools-0.13.4/ciftiTools/man/remap_gifti.Rd |only ciftiTools-0.13.4/ciftiTools/man/remove_xifti.Rd | 12 ciftiTools-0.13.4/ciftiTools/man/resample_cifti.Rd | 34 ciftiTools-0.13.4/ciftiTools/man/resample_cifti_components.Rd | 25 ciftiTools-0.13.4/ciftiTools/man/resample_cifti_from_template.Rd | 20 ciftiTools-0.13.4/ciftiTools/man/resample_cifti_wrapper.Rd | 6 ciftiTools-0.13.4/ciftiTools/man/resample_gifti.Rd | 6 ciftiTools-0.13.4/ciftiTools/man/resample_surf.Rd | 11 ciftiTools-0.13.4/ciftiTools/man/rotate_surf.Rd | 11 ciftiTools-0.13.4/ciftiTools/man/scale_xifti.Rd | 20 ciftiTools-0.13.4/ciftiTools/man/select_xifti.Rd | 12 ciftiTools-0.13.4/ciftiTools/man/separate_cifti.Rd | 70 + ciftiTools-0.13.4/ciftiTools/man/separate_cifti_files.Rd | 74 +- ciftiTools-0.13.4/ciftiTools/man/separate_cifti_wrapper.Rd | 2 ciftiTools-0.13.4/ciftiTools/man/set_names_xifti.Rd | 20 ciftiTools-0.13.4/ciftiTools/man/smooth_cifti.Rd | 26 ciftiTools-0.13.4/ciftiTools/man/smooth_gifti.Rd | 6 ciftiTools-0.13.4/ciftiTools/man/summary.surf.Rd | 2 ciftiTools-0.13.4/ciftiTools/man/surf_area.Rd |only ciftiTools-0.13.4/ciftiTools/man/template_xifti.Rd | 8 ciftiTools-0.13.4/ciftiTools/man/transform_xifti.Rd | 14 ciftiTools-0.13.4/ciftiTools/man/unmask_subcortex.Rd | 17 ciftiTools-0.13.4/ciftiTools/man/unvec_vol.Rd |only ciftiTools-0.13.4/ciftiTools/man/use_color_pal.Rd | 7 ciftiTools-0.13.4/ciftiTools/man/view_comp.Rd | 8 ciftiTools-0.13.4/ciftiTools/man/view_surf.Rd | 18 ciftiTools-0.13.4/ciftiTools/man/view_xifti.Rd | 16 ciftiTools-0.13.4/ciftiTools/man/view_xifti_surface.Rd | 12 ciftiTools-0.13.4/ciftiTools/man/view_xifti_volume.Rd | 12 ciftiTools-0.13.4/ciftiTools/man/write_cifti.Rd | 14 ciftiTools-0.13.4/ciftiTools/man/write_dir_Param_generic.Rd | 2 ciftiTools-0.13.4/ciftiTools/man/write_metric_gifti.Rd | 7 ciftiTools-0.13.4/ciftiTools/man/write_subcort_nifti.Rd | 5 ciftiTools-0.13.4/ciftiTools/man/write_surf_gifti.Rd | 16 ciftiTools-0.13.4/ciftiTools/man/write_xifti2.Rd | 72 +- ciftiTools-0.13.4/ciftiTools/tests/testthat/test-misc.R | 60 + 145 files changed, 2012 insertions(+), 988 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') 'PostgreSQL' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'PostgreSQL' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcpostgresql versions 0.9.0 dated 2024-01-09 and 0.9.0.1 dated 2024-01-21
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/Makevars.ucrt | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
More information about adbcpostgresql at CRAN
Permanent link
Title: Helper Package for Installing OpenCV with R
Description: Installs 'OpenCV' for use by other packages. 'OpenCV' <https://opencv.org/>
is library of programming functions mainly aimed at real-time computer
vision. This 'Lite' version installs the stable base version of 'OpenCV' and
some of its experimental externally contributed modules. It does not provide
R bindings directly.
Author: Simon Garnier [aut, cre] ,
Muschelli John [ctb]
Maintainer: Simon Garnier <garnier@njit.edu>
Diff between ROpenCVLite versions 4.90.0 dated 2024-01-08 and 4.90.1 dated 2024-01-21
ROpenCVLite-4.90.0/ROpenCVLite/inst/OpenCVModule.4.7.0.cmake |only ROpenCVLite-4.90.0/ROpenCVLite/inst/OpenCVModule.4.8.0.cmake |only ROpenCVLite-4.90.1/ROpenCVLite/DESCRIPTION | 10 ++++---- ROpenCVLite-4.90.1/ROpenCVLite/MD5 | 8 ++---- ROpenCVLite-4.90.1/ROpenCVLite/NEWS.md | 13 +++++++++++ ROpenCVLite-4.90.1/ROpenCVLite/R/install.R | 7 +++-- 6 files changed, 25 insertions(+), 13 deletions(-)
Title: R MPFR - Multiple Precision Floating-Point Reliable
Description: Arithmetic (via S4 classes and methods) for
arbitrary precision floating point numbers, including transcendental
("special") functions. To this end, the package interfaces to
the 'LGPL' licensed 'MPFR' (Multiple Precision Floating-Point Reliable) Library
which itself is based on the 'GMP' (GNU Multiple Precision) Library.
Author: Martin Maechler [aut, cre] ,
Richard M. Heiberger [ctb] , *Bin, *Dec),
John C. Nash [ctb] , origin of unirootR),
Hans W. Borchers [ctb] ; origin of
hjkMpfr)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between Rmpfr versions 0.9-4 dated 2023-12-04 and 0.9-5 dated 2024-01-21
DESCRIPTION | 10 +- MD5 | 40 +++++----- NAMESPACE | 2 R/Math.R | 3 R/as.R | 6 + R/gmp-convert.R | 29 ++++++- R/special-fun.R | 20 +++-- build/partial.rdb |binary inst/NEWS.Rd | 32 ++++++++ inst/doc/Maechler_useR_2011-abstr.pdf |binary inst/doc/Rmpfr-pkg.pdf |binary inst/doc/log1mexp-note.pdf |binary man/distr-etc.Rd | 3 man/gmp-conversions.Rd | 28 ++++++- man/mpfr-utils.Rd | 26 +++++- man/qnormI.Rd | 11 +- src/Ops.c | 4 + src/utils.c | 26 +++--- tests/binomial-etc.R | 18 ++-- tests/create.R | 13 +++ tests/special-fun-ex.R | 136 ++++++++++++++++++++++++++++------ 21 files changed, 317 insertions(+), 90 deletions(-)
Title: Self Contained Units of Source Code
Description: Provides modules as an organizational unit for source code. Modules
enforce to be more rigorous when defining dependencies and have
a local search path. They can be used as a sub unit within packages
or in scripts.
Author: Sebastian Warnholz [aut, cre]
Maintainer: Sebastian Warnholz <wahani@gmail.com>
Diff between modules versions 0.12.0 dated 2023-08-25 and 0.13.0 dated 2024-01-21
DESCRIPTION | 6 - MD5 | 18 ++-- NEWS | 178 +++++++++++++++++++++++------------------ R/export.R | 24 ++++- build/vignette.rds |binary inst/doc/modulesAsFiles.html | 4 inst/doc/modulesAsObjects.html | 4 inst/doc/modulesInR.R | 6 - inst/doc/modulesInR.html | 8 - tests/testthat/test-export.R | 9 +- 10 files changed, 152 insertions(+), 105 deletions(-)
Title: A Mixture Model-Based Approach to the Clustering of Microarray
Expression Data
Description: Provides unsupervised selection and clustering of microarray data
using mixture models. Following the methods described in McLachlan, Bean and
Peel (2002) <doi:10.1093/bioinformatics/18.3.413> a subset of genes are selected
based one the likelihood ratio statistic for the test of one versus two
components when fitting mixtures of t-distributions to the expression data
for each gene. The dimensionality of this gene subset is further reduced through
the use of mixtures of factor analyzers, allowing the tissue samples to be
clustered by fitting mixtures of normal distributions.
Author: Andrew Thomas Jones [aut, cre]
Maintainer: Andrew Thomas Jones <andrewthomasjones@gmail.com>
Diff between EMMIXgene versions 0.1.3 dated 2020-03-23 and 0.1.4 dated 2024-01-21
EMMIXgene-0.1.3/EMMIXgene/build |only EMMIXgene-0.1.3/EMMIXgene/data/datalist |only EMMIXgene-0.1.3/EMMIXgene/inst/doc |only EMMIXgene-0.1.3/EMMIXgene/vignettes |only EMMIXgene-0.1.4/EMMIXgene/DESCRIPTION | 21 ++++---- EMMIXgene-0.1.4/EMMIXgene/MD5 | 31 +++++-------- EMMIXgene-0.1.4/EMMIXgene/NEWS.md | 4 + EMMIXgene-0.1.4/EMMIXgene/README.md | 6 -- EMMIXgene-0.1.4/EMMIXgene/inst/CITATION | 4 - EMMIXgene-0.1.4/EMMIXgene/man/EMMIXgene.Rd | 1 EMMIXgene-0.1.4/EMMIXgene/man/alon_data.Rd | 4 + EMMIXgene-0.1.4/EMMIXgene/man/golub_data.Rd | 6 +- EMMIXgene-0.1.4/EMMIXgene/man/plot_single_gene.Rd | 17 +++++-- EMMIXgene-0.1.4/EMMIXgene/man/select_genes.Rd | 14 ++++- EMMIXgene-0.1.4/EMMIXgene/man/top_genes_cluster_tissues.Rd | 3 - EMMIXgene-0.1.4/EMMIXgene/src/RcppExports.cpp | 5 ++ EMMIXgene-0.1.4/EMMIXgene/src/emmix.cpp | 4 - EMMIXgene-0.1.4/EMMIXgene/src/tkmeans.cpp | 1 18 files changed, 71 insertions(+), 50 deletions(-)
Title: Fisher's z-Tests Concerning Difference of Correlations
Description: Computations of Fisher's z-tests concerning different kinds of correlation differences. Additionally, approaches to estimating statistical power via Monte Carlo simulations are implemented.
Author: Christian Bloetner
Maintainer: Christian Bloetner <c.bloetner@gmail.com>
Diff between diffcor versions 0.8.1 dated 2023-10-30 and 0.8.2 dated 2024-01-21
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/diffpwr.dep.R | 30 ++++++++++++++++++------------ R/diffpwr.one.R | 13 ++++++++----- R/diffpwr.two.R | 20 ++++++++++++-------- R/visual_mc.R | 4 ++-- 6 files changed, 49 insertions(+), 36 deletions(-)
Title: Deal with Country Data in an Easy Way
Description: Wrangle country data more effectively and quickly.
This package contains functions to easily identify and convert country names,
download country information, merge country data from different sources,
and make quick world maps.
Author: Francesco Saverio Bellelli [aut, cre, cph]
Maintainer: Francesco Saverio Bellelli <fsabellelli@gmail.com>
Diff between countries versions 1.1.2 dated 2024-01-10 and 1.2.0 dated 2024-01-21
DESCRIPTION | 6 +- MD5 | 48 ++++++++-------- NAMESPACE | 1 NEWS.md | 7 ++ R/check_countries_api.R |only R/country_info.R | 16 +++-- R/country_name.R | 6 +- R/is_country.R | 2 R/list_fields.R | 4 - R/match_table.R | 77 ++++++++++++++++++------- R/sysdata.rda |binary README.md | 38 ++++++------ data/country_reference_list.rda |binary data/country_reference_list_long.rda |binary inst/doc/auto_merge.html | 60 ++++++++++---------- inst/doc/dealing_with_names.R | 4 + inst/doc/dealing_with_names.Rmd | 18 +++--- inst/doc/dealing_with_names.html | 102 ++++++++++++++++++++-------------- man/check_countries_api.Rd |only man/country_info.Rd | 8 +- man/country_name.Rd | 5 + man/is_country.Rd | 2 man/list_fields.Rd | 4 - man/match_table.Rd | 3 + tests/testthat/test_function_output.R | 15 ++++- vignettes/dealing_with_names.Rmd | 18 +++--- 26 files changed, 265 insertions(+), 179 deletions(-)
Title: A Collection of Functions for Graphing Correlation Matrices
Description: Routines for the graphical representation of correlation matrices by means of correlograms, MDS maps and biplots obtained by PCA, PFA or WALS (weighted alternating least squares); See Graffelman & De Leeuw (2023) <doi: 10.1080/00031305.2023.2186952>.
Author: Jan Graffelman [aut, cre],
Jan De Leeuw [aut]
Maintainer: Jan Graffelman <jan.graffelman@upc.edu>
Diff between Correlplot versions 1.0.8 dated 2023-03-06 and 1.0.9 dated 2024-01-21
Correlplot-1.0.8/Correlplot/inst/doc/Correlplot.R |only Correlplot-1.0.8/Correlplot/inst/doc/Correlplot.Rmd |only Correlplot-1.0.8/Correlplot/inst/doc/Correlplot.pdf |only Correlplot-1.0.8/Correlplot/vignettes/Correlplot.Rmd |only Correlplot-1.0.8/Correlplot/vignettes/Correlplot.html |only Correlplot-1.0.9/Correlplot/DESCRIPTION | 10 +- Correlplot-1.0.9/Correlplot/MD5 | 45 ++++++---- Correlplot-1.0.9/Correlplot/NAMESPACE | 7 - Correlplot-1.0.9/Correlplot/R/FitRDeltaQSym.R |only Correlplot-1.0.9/Correlplot/R/eig.R | 3 Correlplot-1.0.9/Correlplot/R/ggbplot.R |only Correlplot-1.0.9/Correlplot/R/ggcorrelogram.R |only Correlplot-1.0.9/Correlplot/R/ggtally.R |only Correlplot-1.0.9/Correlplot/R/ipSymLS.R | 7 + Correlplot-1.0.9/Correlplot/R/jointlim.R |only Correlplot-1.0.9/Correlplot/R/rmse.R | 56 +++++-------- Correlplot-1.0.9/Correlplot/R/rmsePCAandWALS.R | 26 ++---- Correlplot-1.0.9/Correlplot/R/tally.R |only Correlplot-1.0.9/Correlplot/build/partial.rdb |binary Correlplot-1.0.9/Correlplot/build/vignette.rds |binary Correlplot-1.0.9/Correlplot/inst/doc/CorrelplotManual.R |only Correlplot-1.0.9/Correlplot/inst/doc/CorrelplotManual.Rmd |only Correlplot-1.0.9/Correlplot/inst/doc/CorrelplotManual.html |only Correlplot-1.0.9/Correlplot/man/FitRDeltaQSym.Rd |only Correlplot-1.0.9/Correlplot/man/HeartAttack.Rd | 2 Correlplot-1.0.9/Correlplot/man/ggbplot.Rd |only Correlplot-1.0.9/Correlplot/man/ggcorrelogram.Rd |only Correlplot-1.0.9/Correlplot/man/ggtally.Rd |only Correlplot-1.0.9/Correlplot/man/jointlim.Rd |only Correlplot-1.0.9/Correlplot/man/rmse.Rd | 16 +-- Correlplot-1.0.9/Correlplot/man/rmsePCAandWALS.Rd | 6 - Correlplot-1.0.9/Correlplot/man/tally.Rd |only Correlplot-1.0.9/Correlplot/vignettes/Correlplot.bib | 31 +++++++ Correlplot-1.0.9/Correlplot/vignettes/CorrelplotManual.Rmd |only 34 files changed, 123 insertions(+), 86 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-09-11 0.1.4
2023-06-09 0.1.2
2021-05-25 0.1.1