Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-01-19 3.0.2
2023-11-28 3.0.1
2023-09-01 3.0.0
2022-11-19 2.0.0
2022-05-25 1.1.0
2022-01-13 1.0.1
2021-12-10 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-04-30 0.1.16
Title: Simple and Scalable Statistical Modelling in R
Description: Write statistical models in R and fit them by MCMC and
optimisation on CPUs and GPUs, using Google 'TensorFlow'. greta lets
you write your own model like in BUGS, JAGS and Stan, except that you
write models right in R, it scales well to massive datasets, and it’s
easy to extend and build on. See the website for more information,
including tutorials, examples, package documentation, and the greta
forum.
Author: Nick Golding [aut] ,
Nicholas Tierney [aut, cre] ,
Simon Dirmeier [ctb],
Adam Fleischhacker [ctb],
Shirin Glander [ctb],
Martin Ingram [ctb],
Lee Hazel [ctb],
Lionel Hertzog [ctb],
Tiphaine Martin [ctb],
Matt Mulvahill [ctb],
Michael Quinn [ctb],
Dav [...truncated...]
Maintainer: Nicholas Tierney <nicholas.tierney@gmail.com>
Diff between greta versions 0.4.3 dated 2022-09-08 and 0.4.4 dated 2024-02-01
DESCRIPTION | 16 MD5 | 59 +- NAMESPACE | 6 NEWS.md | 6 R/greta_model_class.R | 1 R/greta_stash.R | 5 R/inference.R | 20 R/node_class.R | 1 R/package.R | 2 R/unknowns_class.R | 5 build/vignette.rds |binary inst/CITATION | 4 inst/WORDLIST | 4 inst/doc/example_models.html | 864 ++++++++++++++++----------------- inst/doc/faq.R | 2 inst/doc/faq.html | 150 ++--- inst/doc/get_started.R | 117 ++-- inst/doc/get_started.Rmd | 28 - inst/doc/get_started.html | 343 ++++++------- man/greta.Rd | 34 + man/inference.Rd | 20 man/stash-notes.Rd | 2 tests/testthat/Rplots.pdf |only tests/testthat/_snaps/check-m1.md | 2 tests/testthat/_snaps/distributions.md | 48 + tests/testthat/_snaps/inference.md | 29 - tests/testthat/_snaps/misc.md | 5 tests/testthat/test_distributions.R | 85 +-- tests/testthat/test_inference.R | 53 +- tests/testthat/test_posteriors.R | 14 vignettes/get_started.Rmd | 28 - 31 files changed, 1031 insertions(+), 922 deletions(-)
Title: Disciplined Convex Optimization
Description: An object-oriented modeling language for disciplined
convex programming (DCP) as described in Fu, Narasimhan, and Boyd
(2020, <doi:10.18637/jss.v094.i14>). It allows the user to
formulate convex optimization problems in a natural way following
mathematical convention and DCP rules. The system analyzes the
problem, verifies its convexity, converts it into a canonical
form, and hands it off to an appropriate solver to obtain the
solution. Interfaces to solvers on CRAN and elsewhere are
provided, both commercial and open source.
Author: Anqi Fu [aut, cre],
Balasubramanian Narasimhan [aut],
David W Kang [aut],
Steven Diamond [aut],
John Miller [aut],
Stephen Boyd [ctb],
Paul Kunsberg Rosenfield [ctb]
Maintainer: Anqi Fu <anqif@alumni.stanford.edu>
Diff between CVXR versions 1.0-11 dated 2022-10-30 and 1.0-12 dated 2024-02-01
CVXR-1.0-11/CVXR/man/figures |only CVXR-1.0-12/CVXR/DESCRIPTION | 8 CVXR-1.0-12/CVXR/LICENSE | 2 CVXR-1.0-12/CVXR/MD5 | 100 +++++------ CVXR-1.0-12/CVXR/NEWS.md | 5 CVXR-1.0-12/CVXR/R/atoms.R | 2 CVXR-1.0-12/CVXR/R/conic_solvers.R | 14 - CVXR-1.0-12/CVXR/R/data.R | 2 CVXR-1.0-12/CVXR/R/dgp2dcp.R | 170 ++++++++++---------- CVXR-1.0-12/CVXR/R/elementwise.R | 14 + CVXR-1.0-12/CVXR/R/exports.R | 10 - CVXR-1.0-12/CVXR/R/generics.R | 4 CVXR-1.0-12/CVXR/R/qp_solvers.R | 29 ++- CVXR-1.0-12/CVXR/README.md | 43 ++--- CVXR-1.0-12/CVXR/build/vignette.rds |binary CVXR-1.0-12/CVXR/inst/doc/cvxr_intro.R | 4 CVXR-1.0-12/CVXR/inst/doc/cvxr_intro.html | 13 - CVXR-1.0-12/CVXR/inst/doc/version1.html | 4 CVXR-1.0-12/CVXR/man/ConicSolver-class.Rd | 10 - CVXR-1.0-12/CVXR/man/Dgp2Dcp.add_canon.Rd | 2 CVXR-1.0-12/CVXR/man/Dgp2Dcp.constant_canon.Rd | 4 CVXR-1.0-12/CVXR/man/Dgp2Dcp.div_canon.Rd | 2 CVXR-1.0-12/CVXR/man/Dgp2Dcp.exp_canon.Rd | 2 CVXR-1.0-12/CVXR/man/Dgp2Dcp.eye_minus_inv_canon.Rd | 6 CVXR-1.0-12/CVXR/man/Dgp2Dcp.geo_mean_canon.Rd | 2 CVXR-1.0-12/CVXR/man/Dgp2Dcp.mul_canon.Rd | 2 CVXR-1.0-12/CVXR/man/Dgp2Dcp.mulexpression_canon.Rd | 4 CVXR-1.0-12/CVXR/man/Dgp2Dcp.nonpos_constr_canon.Rd | 2 CVXR-1.0-12/CVXR/man/Dgp2Dcp.norm1_canon.Rd | 2 CVXR-1.0-12/CVXR/man/Dgp2Dcp.norm_inf_canon.Rd | 2 CVXR-1.0-12/CVXR/man/Dgp2Dcp.one_minus_pos_canon.Rd | 2 CVXR-1.0-12/CVXR/man/Dgp2Dcp.parameter_canon.Rd | 2 CVXR-1.0-12/CVXR/man/Dgp2Dcp.pf_eigenvalue_canon.Rd | 2 CVXR-1.0-12/CVXR/man/Dgp2Dcp.pnorm_canon.Rd | 2 CVXR-1.0-12/CVXR/man/Dgp2Dcp.power_canon.Rd | 2 CVXR-1.0-12/CVXR/man/Dgp2Dcp.prod_canon.Rd | 2 CVXR-1.0-12/CVXR/man/Dgp2Dcp.quad_form_canon.Rd | 2 CVXR-1.0-12/CVXR/man/Dgp2Dcp.quad_over_lin_canon.Rd | 2 CVXR-1.0-12/CVXR/man/Dgp2Dcp.sum_canon.Rd | 2 CVXR-1.0-12/CVXR/man/Dgp2Dcp.trace_canon.Rd | 2 CVXR-1.0-12/CVXR/man/Dgp2Dcp.zero_constr_canon.Rd | 2 CVXR-1.0-12/CVXR/man/DgpCanonMethods-class.Rd | 2 CVXR-1.0-12/CVXR/man/DiffPos.Rd | 2 CVXR-1.0-12/CVXR/man/Huber-class.Rd | 4 CVXR-1.0-12/CVXR/man/Power-class.Rd | 6 CVXR-1.0-12/CVXR/man/dspop.Rd | 2 CVXR-1.0-12/CVXR/man/huber.Rd | 4 CVXR-1.0-12/CVXR/man/perform.Rd | 2 CVXR-1.0-12/CVXR/man/power.Rd | 6 CVXR-1.0-12/CVXR/man/psd_coeff_offset.Rd | 6 CVXR-1.0-12/CVXR/src/RcppExports.cpp | 1 51 files changed, 274 insertions(+), 247 deletions(-)
Title: R Interface to the 'QuantLib' Library
Description: The 'RQuantLib' package makes parts of 'QuantLib' accessible from R
The 'QuantLib' project aims to provide a comprehensive software framework
for quantitative finance. The goal is to provide a standard open source library
for quantitative analysis, modeling, trading, and risk management of financial
assets.
Author: Dirk Eddelbuettel, Khanh Nguyen , Terry Leitch
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RQuantLib versions 0.4.20 dated 2023-11-26 and 0.4.21 dated 2024-02-01
ChangeLog | 35 +++++++++++++++++++++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- configure | 33 ++++++++++++--------------------- configure.ac | 17 ++++------------- inst/NEWS.Rd | 10 ++++++++++ src/Makevars.win | 6 +++--- src/utils.cpp | 6 +++++- tools/winlibs.R | 23 +++++++++++++++++------ 9 files changed, 98 insertions(+), 56 deletions(-)
Title: APSIM Next Generation
Description: The Agricultural Production Systems sIMulator ('APSIM') is a widely
used to simulate the agricultural systems for multiple crops. This package
is designed to create, modify and run 'apsimx' files in the 'APSIM' Next
Generation <https://www.apsim.info/>.
Author: Bangyou Zheng [aut, cre]
Maintainer: Bangyou Zheng <bangyou.zheng@csiro.au>
Diff between rapsimng versions 0.4.3 dated 2024-01-29 and 0.4.4 dated 2024-02-01
rapsimng-0.4.3/rapsimng/tests/testthat/test-report.R |only rapsimng-0.4.4/rapsimng/DESCRIPTION | 6 +++--- rapsimng-0.4.4/rapsimng/MD5 | 3 +-- 3 files changed, 4 insertions(+), 5 deletions(-)
Title: Rmetrics - Autoregressive Conditional Heteroskedastic Modelling
Description: Analyze and model heteroskedastic behavior in financial time series.
Author: Diethelm Wuertz [aut] ,
Yohan Chalabi [aut],
Tobias Setz [aut],
Martin Maechler [aut] ,
Chris Boudt [ctb],
Pierre Chausse [ctb],
Michal Miklovac [ctb],
Georgi N. Boshnakov [aut, cre]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between fGarch versions 4031.90 dated 2023-10-15 and 4032.91 dated 2024-02-01
DESCRIPTION | 10 +++--- MD5 | 20 +++++++------ NAMESPACE | 9 ++++- NEWS.md | 2 - R/cvar-VaR.R |only R/methods-predict.R | 55 ++++++++++++++++++++++++++++------- build/partial.rdb |binary inst/NEWS.Rd | 30 ++++++++++++++++++- inst/pkgdown.yml | 4 +- man/VaR.Rd |only man/dist-std.Rd | 2 - man/methods-predict.Rd | 75 +++++++++++++++++++++++++++++++------------------ 12 files changed, 146 insertions(+), 61 deletions(-)
Title: User Friendly Data Visualization
Description: A comprehensive visualization toolkit built with coders of all
skill levels and color-vision impaired audiences in mind. It allows creation
of finely-tuned, publication-quality figures from single function calls.
Visualizations include scatter plots, compositional bar plots, violin, box,
and ridge plots, and more. Customization ranges from size and title
adjustments to discrete-group circling and labeling, hidden data overlay
upon cursor hovering via ggplotly() conversion, and many more, all with
simple, discrete inputs. Color blindness friendliness is powered by legend
adjustments (enlarged keys), and by allowing the use of shapes or
letter-overlay in addition to the carefully selected dittoColors().
Author: Daniel Bunis [aut, cre]
Maintainer: Daniel Bunis <daniel.bunis@ucsf.edu>
Diff between dittoViz versions 1.0.0 dated 2024-01-11 and 1.0.1 dated 2024-02-01
DESCRIPTION | 8 - MD5 | 37 ++--- NAMESPACE | 1 NEWS.md | 9 + R/barPlot.R | 122 ----------------- R/freqPlot.R | 10 + R/scatterHex.R | 49 +++++-- R/scatterPlot.R | 71 ++++++++-- R/utils.R | 176 ------------------------- R/utils_data_gather.R |only R/utils_plot_mods.R | 15 +- R/yPlot.R | 51 +++++-- man/barPlot.Rd | 3 man/freqPlot.Rd | 6 man/scatterHex.Rd | 20 ++ man/scatterPlot.Rd | 33 ++++ man/yPlot.Rd | 13 + tests/testthat/test-hex.R | 16 ++ tests/testthat/test-hover.R | 292 ++++++++++++++++++++++++++++++++++++++++-- tests/testthat/test-scatter.R | 15 ++ 20 files changed, 566 insertions(+), 381 deletions(-)
Title: Fitting Flexible Smooth-in-Time Hazards and Risk Functions via
Logistic and Multinomial Regression
Description: Fit flexible and fully parametric hazard regression models to survival data with single event type or multiple
competing causes via logistic and multinomial regression. Our formulation allows for arbitrary functional forms
of time and its interactions with other predictors for time-dependent hazards and hazard ratios. From the
fitted hazard model, we provide functions to readily calculate and plot cumulative incidence and survival
curves for a given covariate profile. This approach accommodates any log-linear hazard function of
prognostic time, treatment, and covariates, and readily allows for non-proportionality. We also provide
a plot method for visualizing incidence density via population time plots. Based on the case-base sampling
approach of Hanley and Miettinen (2009) <DOI:10.2202/1557-4679.1125>, Saarela and Arjas (2015) <DOI:10.1111/sjos.12125>,
and Saarela (2015) <DOI:10.1007/s10985-015-9352-x>.
Author: Sahir Bhatnagar [aut, cre] ,
Maxime Turgeon [aut] ,
Jesse Islam [aut] ,
Olli Saarela [aut]
,
James Hanley [aut]
Maintainer: Sahir Bhatnagar <sahir.bhatnagar@gmail.com>
Diff between casebase versions 0.10.3 dated 2022-11-16 and 0.10.4 dated 2024-02-01
DESCRIPTION | 31 - MD5 | 45 + NEWS.md | 4 README.md | 115 +--- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 35 - inst/doc/competingRisk.R |only inst/doc/competingRisk.html | 250 ++++----- inst/doc/customizingpopTime.R |only inst/doc/customizingpopTime.html | 314 +++++------ inst/doc/plotabsRisk.R |only inst/doc/plotabsRisk.html | 183 +++--- inst/doc/plotsmoothHazard.R |only inst/doc/plotsmoothHazard.html | 837 +++++++++++++++---------------- inst/doc/popTime.R |only inst/doc/popTime.html | 414 +++++++-------- inst/doc/smoothHazard.R |only inst/doc/smoothHazard.html | 720 +++++++++++++++++++++----- inst/doc/time-varying-covariates.R |only inst/doc/time-varying-covariates.pdf |only man/figures/README-plot-mason-1.png |binary man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-4-1.png |binary tests/testthat/Rplots.pdf |only vignettes/reference.bib | 33 + vignettes/time-varying-covariates.Rmd |only vignettes/time-varying-covariates.html |only 29 files changed, 1732 insertions(+), 1249 deletions(-)
Title: ADaM in R Asset Library
Description: A toolbox for programming Clinical Data Interchange Standards
Consortium (CDISC) compliant Analysis Data Model (ADaM) datasets in R.
ADaM datasets are a mandatory part of any New Drug or Biologics
License Application submitted to the United States Food and Drug
Administration (FDA). Analysis derivations are implemented in
accordance with the "Analysis Data Model Implementation Guide" (CDISC
Analysis Data Model Team, 2021,
<https://www.cdisc.org/standards/foundational/adam>).
Author: Ben Straub [aut, cre],
Stefan Bundfuss [aut],
Jeffrey Dickinson [aut],
Ross Farrugia [aut],
Adam Forys [aut],
G Gayatri [aut],
Daphne Grasselly [aut],
Dinakar Kulkarni [aut],
Edoardo Mancini [aut],
Sadchla Mascary [aut],
Gordon Miller [aut],
Sophie S [...truncated...]
Maintainer: Ben Straub <ben.x.straub@gsk.com>
Diff between admiral versions 1.0.0 dated 2023-12-15 and 1.0.1 dated 2024-02-01
DESCRIPTION | 8 - MD5 | 186 ++++++++++++++++---------------- NEWS.md | 4 R/derive_vars_query.R | 8 + inst/doc/adsl.Rmd | 2 inst/doc/adsl.html | 2 inst/doc/bds_exposure.Rmd | 2 inst/doc/bds_exposure.html | 2 inst/doc/bds_finding.Rmd | 2 inst/doc/bds_finding.html | 2 inst/doc/bds_tte.Rmd | 2 inst/doc/bds_tte.html | 2 inst/doc/generic.html | 4 inst/doc/occds.Rmd | 2 inst/doc/occds.html | 52 ++++---- inst/doc/pk_adnca.Rmd | 2 inst/doc/pk_adnca.html | 2 inst/templates/ad_adeg.R | 2 man/admiral_adlb.Rd | 4 man/admiral_adsl.Rd | 4 man/basket_select.Rd | 2 man/censor_source.Rd | 2 man/compute_age_years.Rd | 6 - man/compute_bmi.Rd | 2 man/compute_bsa.Rd | 2 man/compute_dtf.Rd | 6 - man/compute_duration.Rd | 6 - man/compute_egfr.Rd | 2 man/compute_framingham.Rd | 2 man/compute_map.Rd | 2 man/compute_qtc.Rd | 2 man/compute_rr.Rd | 2 man/compute_scale.Rd | 2 man/compute_tmf.Rd | 6 - man/convert_date_to_dtm.Rd | 6 - man/convert_dtc_to_dt.Rd | 4 man/convert_dtc_to_dtm.Rd | 4 man/date_source.Rd | 2 man/derive_basetype_records.Rd | 2 man/derive_param_extreme_record.Rd | 2 man/derive_var_analysis_ratio.Rd | 2 man/derive_var_anrind.Rd | 2 man/derive_var_base.Rd | 2 man/derive_var_chg.Rd | 2 man/derive_var_dthcaus.Rd | 2 man/derive_var_extreme_flag.Rd | 2 man/derive_var_joined_exist_flag.Rd | 2 man/derive_var_merged_ef_msrc.Rd | 2 man/derive_var_merged_exist_flag.Rd | 2 man/derive_var_merged_summary.Rd | 2 man/derive_var_obs_number.Rd | 2 man/derive_var_ontrtfl.Rd | 2 man/derive_var_pchg.Rd | 2 man/derive_var_relative_flag.Rd | 2 man/derive_var_shift.Rd | 2 man/derive_var_trtdurd.Rd | 4 man/derive_vars_computed.Rd | 2 man/derive_vars_dt.Rd | 2 man/derive_vars_dtm.Rd | 2 man/derive_vars_dtm_to_dt.Rd | 4 man/derive_vars_dtm_to_tm.Rd | 4 man/derive_vars_duration.Rd | 4 man/derive_vars_dy.Rd | 4 man/derive_vars_joined.Rd | 2 man/derive_vars_query.Rd | 2 man/derive_vars_transposed.Rd | 4 man/dt_level.Rd | 4 man/dthcaus_source.Rd | 2 man/dtm_level.Rd | 4 man/event_joined.Rd | 2 man/event_source.Rd | 2 man/ex_single.Rd | 4 man/example_qs.Rd | 4 man/extract_duplicate_records.Rd | 2 man/flag_event.Rd | 2 man/format.basket_select.Rd | 2 man/get_imputation_target_date.Rd | 4 man/get_imputation_target_time.Rd | 4 man/get_partialdatetime.Rd | 4 man/get_summary_records.Rd | 2 man/impute_dtc_dt.Rd | 2 man/impute_dtc_dtm.Rd | 2 man/query.Rd | 2 man/records_source.Rd | 2 man/signal_duplicate_records.Rd | 2 man/tte_source.Rd | 2 man/tte_source_objects.Rd | 2 tests/testthat/test-derive_vars_query.R | 6 - vignettes/adsl.Rmd | 2 vignettes/bds_exposure.Rmd | 2 vignettes/bds_finding.Rmd | 2 vignettes/bds_tte.Rmd | 2 vignettes/occds.Rmd | 2 vignettes/pk_adnca.Rmd | 2 94 files changed, 252 insertions(+), 244 deletions(-)
Title: Spatial Forecast Verification
Description: Spatial forecast verification refers to verifying weather forecasts when the verification set (forecast and observations) is on a spatial field, usually a high-resolution gridded spatial field. Most of the functions here require the forecast and observed fields to be gridded and on the same grid. For a thorough review of most of the methods in this package, please see Gilleland et al. (2009) <doi: 10.1175/2009WAF2222269.1> and for a tutorial on some of the main functions available here, see Gilleland (2022) <doi: 10.5065/4px3-5a05>.
Author: Eric Gilleland [aut, cre],
Kim Elmore [ctb],
Caren Marzban [ctb],
Matt Pocernich [ctb],
Gregor Skok [ctb]
Maintainer: Eric Gilleland <EricG@ucar.edu>
Diff between SpatialVx versions 1.0-1 dated 2022-11-08 and 1.0-2 dated 2024-02-01
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- man/Fint2d.Rd | 8 ++++---- man/Gbeta.Rd | 2 +- man/Mij.Rd | 6 +++--- man/binarizer.Rd | 2 +- man/deltamm.Rd | 9 ++++++--- man/gmm2d.Rd | 4 ++-- man/variographier.Rd | 4 ++-- 9 files changed, 31 insertions(+), 28 deletions(-)
Title: Robust Estimation in Very Small Samples
Description: Implements the estimation techniques described in Rousseeuw &
Verboven (2002) <doi:10.1016/S0167-9473(02)00078-6> for the location and
scale of very small samples.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between revss versions 1.0.5 dated 2023-02-01 and 1.0.6 dated 2024-02-01
revss-1.0.5/revss/inst/tinytest/test_revss.R |only revss-1.0.6/revss/DESCRIPTION | 8 - revss-1.0.6/revss/MD5 | 21 ++--- revss-1.0.6/revss/README.md | 97 ++++-------------------- revss-1.0.6/revss/build/partial.rdb |binary revss-1.0.6/revss/inst/CITATION | 2 revss-1.0.6/revss/inst/NEWS.Rd | 62 +++++++++------ revss-1.0.6/revss/inst/tinytest/test_1version.R |only revss-1.0.6/revss/inst/tinytest/test_2revss.R |only revss-1.0.6/revss/man/adm.Rd | 3 revss-1.0.6/revss/man/revss-package.Rd | 3 revss-1.0.6/revss/man/robLoc.Rd | 3 revss-1.0.6/revss/man/robScale.Rd | 3 13 files changed, 83 insertions(+), 119 deletions(-)
Title: Interface to the 'nanoarrow' 'C' Library
Description: Provides an 'R' interface to the 'nanoarrow' 'C' library and the
'Apache Arrow' application binary interface. Functions to import and
export 'ArrowArray', 'ArrowSchema', and 'ArrowArrayStream' 'C' structures
to and from 'R' objects are provided alongside helpers to facilitate zero-copy
data transfer among 'R' bindings to libraries implementing the 'Arrow' 'C'
data interface.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between nanoarrow versions 0.3.0.1 dated 2023-12-07 and 0.4.0 dated 2024-02-01
nanoarrow-0.3.0.1/nanoarrow/inst/include/r_nanoarrow.h |only nanoarrow-0.4.0/nanoarrow/DESCRIPTION | 6 nanoarrow-0.4.0/nanoarrow/MD5 | 85 - nanoarrow-0.4.0/nanoarrow/NAMESPACE | 12 nanoarrow-0.4.0/nanoarrow/NEWS.md | 8 nanoarrow-0.4.0/nanoarrow/R/array-stream.R | 30 nanoarrow-0.4.0/nanoarrow/R/as-array.R | 53 nanoarrow-0.4.0/nanoarrow/R/buffer.R | 11 nanoarrow-0.4.0/nanoarrow/R/pkg-arrow.R | 100 + nanoarrow-0.4.0/nanoarrow/R/schema.R | 28 nanoarrow-0.4.0/nanoarrow/R/zzz.R | 3 nanoarrow-0.4.0/nanoarrow/inst/include/nanoarrow |only nanoarrow-0.4.0/nanoarrow/man/array_stream_set_finalizer.Rd | 9 nanoarrow-0.4.0/nanoarrow/src/Makevars |only nanoarrow-0.4.0/nanoarrow/src/altrep.c | 2 nanoarrow-0.4.0/nanoarrow/src/array.c | 65 - nanoarrow-0.4.0/nanoarrow/src/array.h | 47 nanoarrow-0.4.0/nanoarrow/src/array_stream.c | 65 - nanoarrow-0.4.0/nanoarrow/src/array_stream.h | 39 nanoarrow-0.4.0/nanoarrow/src/array_view.c | 6 nanoarrow-0.4.0/nanoarrow/src/as_array.c | 46 nanoarrow-0.4.0/nanoarrow/src/buffer.c | 9 nanoarrow-0.4.0/nanoarrow/src/buffer.h | 4 nanoarrow-0.4.0/nanoarrow/src/convert.c | 8 nanoarrow-0.4.0/nanoarrow/src/convert_array.c | 18 nanoarrow-0.4.0/nanoarrow/src/convert_array_stream.c | 37 nanoarrow-0.4.0/nanoarrow/src/infer_ptype.c | 4 nanoarrow-0.4.0/nanoarrow/src/materialize.c | 18 nanoarrow-0.4.0/nanoarrow/src/materialize_chr.h | 31 nanoarrow-0.4.0/nanoarrow/src/materialize_common.h | 2 nanoarrow-0.4.0/nanoarrow/src/materialize_int.h | 6 nanoarrow-0.4.0/nanoarrow/src/nanoarrow.c | 419 ++++++- nanoarrow-0.4.0/nanoarrow/src/nanoarrow.h | 531 +++++++--- nanoarrow-0.4.0/nanoarrow/src/pointers.c | 19 nanoarrow-0.4.0/nanoarrow/src/schema.c | 80 - nanoarrow-0.4.0/nanoarrow/src/schema.h | 44 nanoarrow-0.4.0/nanoarrow/src/util.c | 4 nanoarrow-0.4.0/nanoarrow/src/util.h | 4 nanoarrow-0.4.0/nanoarrow/tests/testthat/_snaps/array-stream.md | 4 nanoarrow-0.4.0/nanoarrow/tests/testthat/test-array-stream.R | 33 nanoarrow-0.4.0/nanoarrow/tests/testthat/test-as-array.R | 69 + nanoarrow-0.4.0/nanoarrow/tests/testthat/test-buffer.R | 5 nanoarrow-0.4.0/nanoarrow/tests/testthat/test-convert-array.R | 35 nanoarrow-0.4.0/nanoarrow/tests/testthat/test-pkg-arrow.R | 129 ++ nanoarrow-0.4.0/nanoarrow/tests/testthat/test-schema.R | 24 45 files changed, 1541 insertions(+), 611 deletions(-)
Title: Generalized Estimating Equation Package
Description: Generalized estimating equations solver for parameters in
mean, scale, and correlation structures, through mean link,
scale link, and correlation link. Can also handle clustered
categorical responses. See e.g. Halekoh and Højsgaard, (2005,
<doi:10.18637/jss.v015.i02>), for details.
Author: Soeren Hoejsgaard [aut, cre, cph],
Ulrich Halekoh [aut, cph],
Jun Yan [aut, cph],
Claus Thorn Ekstroem [ctb]
Maintainer: Soeren Hoejsgaard <sorenh@math.aau.dk>
Diff between geepack versions 1.3.9 dated 2022-08-16 and 1.3.10 dated 2024-02-01
DESCRIPTION | 8 ++--- MD5 | 18 ++++++------ NEWS.md | 4 ++ build/vignette.rds |binary inst/CITATION | 21 ++++++++------ inst/doc/geepack-manual.R | 37 ++++++++++++------------- inst/doc/geepack-manual.Rnw | 63 +++++++++++++++++++++++-------------------- inst/doc/geepack-manual.pdf |binary man/geepack-internal.Rd | 1 vignettes/geepack-manual.Rnw | 63 +++++++++++++++++++++++-------------------- 10 files changed, 116 insertions(+), 99 deletions(-)
Title: Nonlinear Mixed Effects Models in Population PK/PD
Description: Fit and compare nonlinear mixed-effects models in differential
equations with flexible dosing information commonly seen in pharmacokinetics
and pharmacodynamics (Almquist, Leander, and Jirstrand 2015
<doi:10.1007/s10928-015-9409-1>). Differential equation solving is
by compiled C code provided in the 'rxode2' package
(Wang, Hallow, and James 2015 <doi:10.1002/psp4.12052>).
Author: Matthew Fidler [aut, cre] ,
Yuan Xiong [ctb],
Rik Schoemaker [ctb] ,
Justin Wilkins [ctb] ,
Wenping Wang [ctb],
Mirjam Trame [ctb],
Huijuan Xu [ctb],
John Harrold [ctb],
Bill Denney [ctb] ,
Theodoros Papathanasiou [ctb],
Teun Post [ctb],
Richard Hooi [...truncated...]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between nlmixr2 versions 2.1.0 dated 2024-01-09 and 2.1.1 dated 2024-02-01
DESCRIPTION | 11 +++--- MD5 | 24 ++++++------- NEWS.md | 4 ++ README.md | 47 ++++++++++++++++++-------- man/bootplot.Rd | 9 ----- man/bootstrapFit.Rd | 87 +++++-------------------------------------------- man/covarSearchAuto.Rd | 18 +++------- man/nlmixr2.Rd | 2 - man/vpcCens.Rd | 21 ++++++----- man/vpcCensTad.Rd | 21 ++++++----- man/vpcPlot.Rd | 23 ++++++------ man/vpcPlotTad.Rd | 21 ++++++----- man/vpcSim.Rd | 5 ++ 13 files changed, 121 insertions(+), 172 deletions(-)
Title: Airborne LiDAR Data Manipulation and Visualization for Forestry
Applications
Description: Airborne LiDAR (Light Detection and Ranging) interface for data
manipulation and visualization. Read/write 'las' and 'laz' files, computation
of metrics in area based approach, point filtering, artificial point reduction,
classification from geographic data, normalization, individual tree segmentation
and other manipulations.
Author: Jean-Romain Roussel [aut, cre, cph],
David Auty [aut, ctb] ,
Florian De Boissieu [ctb] ,
Andrew Sanchez Meador [ctb] for
segment_snags),
Bourdon Jean-Francois [ctb] for
track_sensor),
Gatziolis Demetrios [ctb] for
track_sensor),
Leon Steinmeier [c [...truncated...]
Maintainer: Jean-Romain Roussel <jean-romain.roussel.1@ulaval.ca>
Diff between lidR versions 4.0.4 dated 2023-09-07 and 4.1.0 dated 2024-02-01
DESCRIPTION | 21 +- MD5 | 101 +++++++------ NAMESPACE | 14 - NEWS.md | 23 +++ R/RcppExports.R | 12 + R/clip_roi.R | 13 + R/io_readLAScatalog.R | 145 +++++++++++++------ R/las_check.R | 14 + R/metrics_crowns.R | 5 R/metrics_pixels.R | 3 R/metrics_point.R | 10 - R/metrics_stdmetrics.R | 37 +--- R/plot.R | 2 R/print.R | 6 R/st_area.R | 5 R/st_bbox.R | 57 ------- R/st_crs.R | 15 +- R/utils_base.R | 1 R/utils_chm.R |only R/utils_geometry.R | 7 README.md | 2 build/vignette.rds |binary inst/doc/lidR-LAS-class.R | 6 inst/doc/lidR-LAScatalog-class.R | 6 inst/doc/lidR-LAScatalog-class.html | 200 +++++++++++++-------------- inst/doc/lidR-LAScatalog-engine.R | 28 +-- inst/doc/lidR-LAScatalog-engine.Rmd | 6 inst/doc/lidR-LAScatalog-engine.html | 12 - inst/doc/lidR-computation-speed-LAScatalog.R | 22 +- inst/include/SpatialIndex.h | 4 inst/include/lidR/GridPartition.h | 11 + inst/include/lidR/Octree.h | 10 + man/lidR-package.Rd | 1 man/nstdmetrics.Rd | 7 man/pitfill_stonge2008.Rd |only man/point_metrics.Rd | 17 +- man/st_area.Rd | 3 man/st_bbox.Rd | 31 ---- man/st_crs.Rd | 6 src/C_chm_prep.cpp |only src/LAS.cpp | 89 +++++++++++- src/LAS.h | 4 src/RcppExports.cpp | 37 +++- src/RcppFunction.cpp | 8 - tests/testthat/Rplots.pdf |binary tests/testthat/test-apply_automerge.R | 12 - tests/testthat/test-apply_generic.R | 2 tests/testthat/test-apply_restart.R | 2 tests/testthat/test-clip.R | 23 --- tests/testthat/test-roughness.R | 1 tests/testthat/test-spatialindex.R | 36 ++-- tests/testthat/test-st_transform.R | 4 vignettes/lidR-LAScatalog-engine.Rmd | 6 53 files changed, 608 insertions(+), 479 deletions(-)
Title: A Unifying API for Calling the 'Unity' '3D' Video Game Engine
Description: Functions for the creation and manipulation of scenes and objects
within the 'Unity' '3D' video game engine (<https://unity.com/>). Specific
focuses include the creation and import of terrain data and 'GameObjects' as
well as scene management.
Author: Michael Mahoney [aut, cre] ,
Will Jones [rev] for rOpenSci,
see <https://github.com/ropensci/software-review/issues/521>),
Tan Tran [rev] for rOpenSci, see
<https://github.com/ropensci/software-review/issues/521>)
Maintainer: Michael Mahoney <mike.mahoney.218@gmail.com>
Diff between unifir versions 0.2.3 dated 2022-12-02 and 0.2.4 dated 2024-02-01
DESCRIPTION | 8 MD5 | 34 +- NAMESPACE | 2 NEWS.md | 7 R/load_png.R | 2 R/make_script.R | 2 R/read_raw.R | 2 R/unifir-package.R | 1 R/utils.R | 9 build/vignette.rds |binary inst/doc/unifir-asset-guide.R | 2 inst/doc/unifir-asset-guide.html | 47 ++- inst/doc/unifir-dev-guide.R | 2 inst/doc/unifir-dev-guide.html | 332 ++++++++++++++-------------- inst/doc/unifir-user-guide.R | 4 inst/doc/unifir-user-guide.html | 139 ++++++----- tests/testthat/test-associate_coordinates.R | 2 tests/testthat/test-make_script.R | 4 18 files changed, 320 insertions(+), 279 deletions(-)
Title: Representing Graphs as 'graph6', 'digraph6' or 'sparse6' Strings
Description: Encode network data as strings of printable ASCII characters. Implemented
functions include encoding and decoding adjacency matrices, edgelists, igraph, and
network objects to/from formats 'graph6', 'sparse6', and 'digraph6'. The formats and
methods are described in McKay, B.D. and Piperno, A (2014)
<doi:10.1016/j.jsc.2013.09.003>.
Author: Michal Bojanowski [aut, cre] ,
David Schoch [aut]
Maintainer: Michal Bojanowski <michal2992@gmail.com>
Diff between rgraph6 versions 2.0-3 dated 2023-12-07 and 2.0-4 dated 2024-02-01
DESCRIPTION | 8 ++--- MD5 | 12 ++++---- NEWS.md | 5 +++ inst/doc/rgraph6.R | 2 - inst/doc/rgraph6.Rmd | 2 - inst/doc/rgraph6.html | 68 +++++++++++++++++++++++++------------------------- vignettes/rgraph6.Rmd | 2 - 7 files changed, 52 insertions(+), 47 deletions(-)
Title: Coercion Routines for Network Data Objects
Description: Functions implemented in this package allow to coerce (i.e.
convert) network data between classes provided by other R packages.
Currently supported classes are those defined in packages: network and
igraph.
Author: Michal Bojanowski [aut, cre]
Maintainer: Michal Bojanowski <michal2992@gmail.com>
Diff between intergraph versions 2.0-3 dated 2023-08-20 and 2.0-4 dated 2024-02-01
DESCRIPTION | 8 +- MD5 | 36 +++++------ NAMESPACE | 6 + R/asDF.R | 2 R/asIgraph.R | 8 +- R/asNetwork.R | 8 +- R/dumpAttr.R | 12 +-- R/intergraph-package.R | 3 R/s3common.R | 14 ++-- build/vignette.rds |binary inst/doc/howto.R | 10 +-- inst/doc/howto.Rmd | 4 - inst/doc/howto.html | 113 ++++++++++++++++++------------------ man/exNetwork.Rd | 20 +++--- man/intergraph-package.Rd | 11 +++ tests/testthat/test-asIgraph.R | 2 tests/testthat/test-attrmap.R | 2 tests/testthat/test-github_issues.R | 4 - vignettes/howto.Rmd | 4 - 19 files changed, 145 insertions(+), 122 deletions(-)
Title: Quick Indexation
Description: Quick indexation of any type of vector or of any combination of those. Indexation turns a vector into an integer vector going from 1 to the number of unique elements. Indexes are important building blocks for many algorithms. The method is described at <https://github.com/lrberge/indexthis/>.
Author: Laurent Berge [aut, cre],
Sebastian Krantz [ctb],
Morgan Jacob [ctb]
Maintainer: Laurent Berge <laurent.berge@u-bordeaux.fr>
Diff between indexthis versions 1.0.0 dated 2024-01-26 and 1.0.1 dated 2024-02-01
DESCRIPTION | 7 - MD5 | 10 +- NEWS.md | 6 + R/check.R | 7 + man/to_index.Rd | 222 +++++++++++++++++++++++++++---------------------------- src/to_index.cpp | 62 +++++++++++---- 6 files changed, 179 insertions(+), 135 deletions(-)
Title: Analysis of Biological Count Data, Especially from Single-Cell
RNA-Seq
Description: A set of functions for applying a
restricted linear algebra to the analysis of
count-based data. See the accompanying preprint
manuscript: "Normalizing need not be the norm:
count-based math for analyzing single-cell data"
Church et al (2022) <doi:10.1101/2022.06.01.494334>
This tool is specifically designed to analyze
count matrices from single cell RNA sequencing
assays. The tools implement several count-based
approaches for standard steps in single-cell
RNA-seq analysis, including scoring genes and cells,
comparing cells and clustering, calculating differential
gene expression, and several methods for rank
reduction. There are many opportunities for further
optimization that may prove useful in the analysis of
other data. We provide the source code freely
available at <https://github.com/shchurch/countland>
and encourage users and developers to fork the code for
their own purposes.
Author: Church Samuel H. [aut, cre]
Maintainer: Church Samuel H. <samuelhchurch@gmail.com>
Diff between countland versions 0.1.1 dated 2022-08-17 and 0.1.2 dated 2024-02-01
DESCRIPTION | 10 ++++++---- MD5 | 5 +++-- NEWS.md |only R/countland_embed.R | 2 +- 4 files changed, 10 insertions(+), 7 deletions(-)
Title: Diagnostics for Pharmacometric Models
Description: Diagnostics for non-linear mixed-effects (population)
models from 'NONMEM' <https://www.iconplc.com/solutions/technologies/nonmem/>.
'xpose' facilitates data import, creation of numerical run summary
and provide 'ggplot2'-based graphics for data exploration and model
diagnostics.
Author: Benjamin Guiastrennec [aut, cre, cph],
Andrew C. Hooker [aut, cph],
Sebastian Ueckert [aut, cph],
Mike K. Smith [ctb],
Mats O. Karlsson [aut, cph]
Maintainer: Benjamin Guiastrennec <guiastrennec@gmail.com>
Diff between xpose versions 0.4.17 dated 2023-06-29 and 0.4.18 dated 2024-02-01
DESCRIPTION | 8 ++--- MD5 | 55 ++++++++++++++++++------------------ NEWS.md | 47 +++++++++++++++++------------- R/print_xpose_data.R | 2 - R/print_xpose_plot.R | 3 + R/read_nm_model.R | 37 +++++++++++++----------- R/read_nm_tables.R | 6 +-- R/xplot_helpers.R | 1 R/xpose_data.R | 24 ++++++++++----- build/vignette.rds |binary inst/doc/access_xpdb_data.R | 2 - inst/doc/access_xpdb_data.html | 2 - inst/doc/customize_plots.R | 2 - inst/doc/customize_plots.html | 2 - inst/doc/import_model_outputs.R | 2 - inst/doc/import_model_outputs.html | 2 - inst/doc/introduction.R | 8 ++--- inst/doc/introduction.html | 2 - inst/doc/multiple_pages.R | 12 +++---- inst/doc/multiple_pages.html | 2 - inst/doc/vpc.R | 10 +++--- inst/doc/vpc.html | 2 - man/check_problem.Rd | 2 - man/print.ggplot.Rd |only man/print.xpose_data.Rd | 2 - man/read_nm_files.Rd | 4 +- man/read_nm_model.Rd | 26 ++++++++++------- man/xpose_data.Rd | 14 ++++++--- tests/testthat/test-read_nm_model.R | 2 - 29 files changed, 156 insertions(+), 125 deletions(-)
Title: Utilities from 'Seminar fuer Statistik' ETH Zurich
Description: Useful utilities ['goodies'] from Seminar fuer Statistik ETH Zurich,
some of which were ported from S-plus in the 1990s.
For graphics, have pretty (Log-scale) axes eaxis(), an enhanced Tukey-Anscombe
plot, combining histogram and boxplot, 2d-residual plots, a 'tachoPlot()',
pretty arrows, etc.
For robustness, have a robust F test and robust range().
For system support, notably on Linux, provides 'Sys.*()' functions with
more access to system and CPU information.
Finally, miscellaneous utilities such as simple efficient prime numbers,
integer codes, Duplicated(), toLatex.numeric() and is.whole().
Author: Martin Maechler [aut, cre] ,
Werner Stahel [ctb] , f.robftest, last,
p.scales, p.dnorm),
Andreas Ruckstuhl [ctb] , p.profileTraces,
p.res.2x),
Christian Keller [ctb] , p.tachoPlot),
Kjetil Halvorsen [ctb] , ecdf.ksCI),
Alain Hauser [ctb] , is.whole,
[...truncated...]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between sfsmisc versions 1.1-16 dated 2023-08-10 and 1.1-17 dated 2024-02-01
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- R/TA.plot.R | 2 +- R/misc-goodies.R | 2 +- R/mult.fig.R | 6 ++---- R/p.goodies.R | 15 +++------------ R/prettylab.R | 4 ++-- R/prime-numbers-fn.R | 2 +- R/sessionInfo-ext.R | 1 + build/partial.rdb |binary inst/NEWS.Rd | 11 +++++++++++ man/D1D2.Rd | 6 ++---- 12 files changed, 40 insertions(+), 41 deletions(-)
Title: The R Interface to 'SyncroSim'
Description: 'SyncroSim' is a generalized framework for managing scenario-based
datasets (<https://syncrosim.com/>). 'rsyncrosim' provides an interface to
'SyncroSim'. Simulation models can be added to 'SyncroSim' in order to
transform these datasets, taking advantage of general features such as
defining scenarios of model inputs, running Monte Carlo simulations, and
summarizing model outputs. 'rsyncrosim' requires 'SyncroSim' 2.3.5 or higher
(API documentation: <https://docs.syncrosim.com/>).
Author: Colin Daniel [aut],
Josie Hughes [aut],
Valentin Lucet [aut],
Alex Embrey [aut],
Katie Birchard [aut, cre],
Leonardo Frid [aut],
Tabitha Kennedy [aut],
Shreeram Senthivasan [aut],
ApexRMS [cph]
Maintainer: Katie Birchard <katie.birchard@apexrms.com>
Diff between rsyncrosim versions 1.4.9 dated 2023-10-07 and 1.5.0 dated 2024-02-01
rsyncrosim-1.4.9/rsyncrosim/R/published.R |only rsyncrosim-1.4.9/rsyncrosim/man/published.Rd |only rsyncrosim-1.5.0/rsyncrosim/DESCRIPTION | 13 rsyncrosim-1.5.0/rsyncrosim/LICENSE | 2 rsyncrosim-1.5.0/rsyncrosim/MD5 | 198 ++++----- rsyncrosim-1.5.0/rsyncrosim/NAMESPACE | 2 rsyncrosim-1.5.0/rsyncrosim/NEWS.md | 26 - rsyncrosim-1.5.0/rsyncrosim/R/AAAClassDefinitions.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/addPackage.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/addRow.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/addon.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/autogentags.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/backup.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/breakpoint.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/command.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/condaFilepath.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/datasheet.R | 132 +++--- rsyncrosim-1.5.0/rsyncrosim/R/datasheetRaster.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/datasheetSpatRaster.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/dateModified.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/delete.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/dependency.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/description.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/disableAddon.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/enableAddon.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/filepath.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/folder.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/folderId.R | 5 rsyncrosim-1.5.0/rsyncrosim/R/ignoreDependencies.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/installConda.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/internalHelpers.R | 9 rsyncrosim-1.5.0/rsyncrosim/R/internalWrappers.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/mergeDependencies.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/name.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/owner.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/package.R | 12 rsyncrosim-1.5.0/rsyncrosim/R/parentId.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/print.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/printCmd.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/project.R | 10 rsyncrosim-1.5.0/rsyncrosim/R/projectId.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/readOnly.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/removePackage.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/rsyncrosim.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/run.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/runLog.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/saveDatasheet.R | 42 + rsyncrosim-1.5.0/rsyncrosim/R/scenario.R | 26 - rsyncrosim-1.5.0/rsyncrosim/R/scenarioId.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/session.R | 8 rsyncrosim-1.5.0/rsyncrosim/R/silent.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/sqlStatement.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/ssimEnvironment.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/ssimLibrary.R | 25 - rsyncrosim-1.5.0/rsyncrosim/R/ssimUpdate.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/updatePackage.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/useConda.R | 2 rsyncrosim-1.5.0/rsyncrosim/R/version.R | 2 rsyncrosim-1.5.0/rsyncrosim/man/Folder-class.Rd | 64 +-- rsyncrosim-1.5.0/rsyncrosim/man/Project-class.Rd | 60 +- rsyncrosim-1.5.0/rsyncrosim/man/Scenario-class.Rd | 80 +-- rsyncrosim-1.5.0/rsyncrosim/man/Session-class.Rd | 58 +- rsyncrosim-1.5.0/rsyncrosim/man/SsimLibrary-class.Rd | 54 +- rsyncrosim-1.5.0/rsyncrosim/man/addRow.Rd | 92 ++-- rsyncrosim-1.5.0/rsyncrosim/man/autogentags.Rd | 90 ++-- rsyncrosim-1.5.0/rsyncrosim/man/backup.Rd | 82 +-- rsyncrosim-1.5.0/rsyncrosim/man/condaFilepath.Rd | 100 ++-- rsyncrosim-1.5.0/rsyncrosim/man/datasheet.Rd | 57 +- rsyncrosim-1.5.0/rsyncrosim/man/dateModified.Rd | 92 ++-- rsyncrosim-1.5.0/rsyncrosim/man/delete.Rd | 158 +++---- rsyncrosim-1.5.0/rsyncrosim/man/description.Rd | 120 ++--- rsyncrosim-1.5.0/rsyncrosim/man/filepath.Rd | 92 ++-- rsyncrosim-1.5.0/rsyncrosim/man/folder.Rd | 108 ++--- rsyncrosim-1.5.0/rsyncrosim/man/folderId.Rd | 124 ++--- rsyncrosim-1.5.0/rsyncrosim/man/ignoreDependencies.Rd | 108 ++--- rsyncrosim-1.5.0/rsyncrosim/man/installConda.Rd | 76 +-- rsyncrosim-1.5.0/rsyncrosim/man/mergeDependencies.Rd | 112 ++--- rsyncrosim-1.5.0/rsyncrosim/man/name.Rd | 154 +++---- rsyncrosim-1.5.0/rsyncrosim/man/owner.Rd | 138 +++--- rsyncrosim-1.5.0/rsyncrosim/man/printCmd.Rd | 74 +-- rsyncrosim-1.5.0/rsyncrosim/man/progressBar.Rd | 114 ++--- rsyncrosim-1.5.0/rsyncrosim/man/project.Rd | 178 ++++---- rsyncrosim-1.5.0/rsyncrosim/man/projectId.Rd | 96 ++-- rsyncrosim-1.5.0/rsyncrosim/man/readOnly.Rd | 148 +++--- rsyncrosim-1.5.0/rsyncrosim/man/rsyncrosim.Rd | 38 - rsyncrosim-1.5.0/rsyncrosim/man/runtimeInputFolder.Rd | 54 +- rsyncrosim-1.5.0/rsyncrosim/man/runtimeOutputFolder.Rd | 54 +- rsyncrosim-1.5.0/rsyncrosim/man/runtimeTempFolder.Rd | 50 +- rsyncrosim-1.5.0/rsyncrosim/man/scenario.Rd | 212 +++++----- rsyncrosim-1.5.0/rsyncrosim/man/scenarioId.Rd | 78 +-- rsyncrosim-1.5.0/rsyncrosim/man/silent.Rd | 100 ++-- rsyncrosim-1.5.0/rsyncrosim/man/ssimEnvironment.Rd | 52 +- rsyncrosim-1.5.0/rsyncrosim/man/ssimLibrary.Rd | 16 rsyncrosim-1.5.0/rsyncrosim/man/ssimUpdate.Rd | 98 ++-- rsyncrosim-1.5.0/rsyncrosim/man/tempfilepath.Rd | 86 ++-- rsyncrosim-1.5.0/rsyncrosim/man/updatePackage.Rd | 100 ++-- rsyncrosim-1.5.0/rsyncrosim/man/updateRunLog.Rd | 68 +-- rsyncrosim-1.5.0/rsyncrosim/man/useConda.Rd | 114 ++--- rsyncrosim-1.5.0/rsyncrosim/man/version.Rd | 72 +-- rsyncrosim-1.5.0/rsyncrosim/tests/testthat/test-integration.R | 6 rsyncrosim-1.5.0/rsyncrosim/tests/testthat/test-unit.R | 19 101 files changed, 2239 insertions(+), 2201 deletions(-)
Title: Read and Write ODS Files
Description: Read ODS (OpenDocument Spreadsheet) into R as data frame. Also support writing data frame into ODS file.
Author: Gerrit-Jan Schutten [aut],
Chung-hong Chan [aut, cre] ,
Peter Brohan [aut],
Detlef Steuer [aut] ,
Thomas J. Leeper [aut] ,
John Foster [ctb],
Sergio Oller [ctb],
Jim Hester [ctb] ,
Stephen Watts [ctb],
Arthur Katossky [ctb],
Stas Malavin [ctb],
Dunca [...truncated...]
Maintainer: Chung-hong Chan <chainsawtiney@gmail.com>
Diff between readODS versions 2.1.0 dated 2023-09-10 and 2.2.0 dated 2024-02-01
DESCRIPTION | 12 - MD5 | 47 +++--- NEWS.md | 12 + R/list_ods_sheets.R | 23 ++- R/read_ods.R | 179 +++++++++++++++++--------- build/vignette.rds |binary inst/doc/overview.R | 22 +-- inst/doc/overview.Rmd | 12 + inst/doc/overview.html | 10 - man/list_ods_sheets.Rd | 17 ++ man/read_ods.Rd | 34 +++- src/read_flat_ods_.cpp | 59 +------- src/read_ods_.cpp | 59 +------- src/read_ods_internals.cpp | 74 +++++++++- src/read_ods_internals.h | 8 + src/write_sheet_file_.cpp | 4 tests/testdata/leadingspaces.ods |only tests/testthat/mtcars.xlsx |only tests/testthat/test_cellranger.R | 5 tests/testthat/test_determine.R |only tests/testthat/test_list_sheets.R | 5 tests/testthat/test_read_fods.R | 19 +- tests/testthat/test_read_ods.R | 73 +++++++--- tests/testthat/test_write_ods_append_update.R | 111 ++++++++-------- tests/testthat/test_write_sheet.R | 57 ++++---- vignettes/overview.Rmd | 12 + 26 files changed, 502 insertions(+), 352 deletions(-)
Title: Create Blogs and Websites with R Markdown
Description: Write blog posts and web pages in R Markdown. This package
supports the static site generator 'Hugo' (<https://gohugo.io>) best,
and it also supports 'Jekyll' (<https://jekyllrb.com>) and 'Hexo'
(<https://hexo.io>).
Author: Yihui Xie [aut, cre] ,
Christophe Dervieux [aut] ,
Alison Presmanes Hill [aut] ,
Amber Thomas [ctb],
Beilei Bian [ctb],
Brandon Greenwell [ctb],
Brian Barkley [ctb],
Deependra Dhakal [ctb],
Eric Nantz [ctb],
Forest Fang [ctb],
Garrick Aden-Buie [ctb] [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between blogdown versions 1.18 dated 2023-06-18 and 1.19 dated 2024-02-01
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/render.R | 8 +++++++- R/utils.R | 4 ++-- tests/test-ci/test-themes.R | 12 +++++++++--- 5 files changed, 25 insertions(+), 13 deletions(-)
Title: Collection of Household Survey Packages Conducted by IBGE
Description: Provides access to packages developed for downloading, reading and analyzing
microdata from household surveys in Integrated System of Household Surveys - SIPD
conducted by Brazilian Institute of Geography and Statistics - IBGE.
More information can be obtained from the official website <https://www.ibge.gov.br/>.
Author: Gabriel Assuncao [aut, cre],
Luna Hidalgo [aut],
Douglas Braga [ctb],
Viviane Quintaes [ctb]
Maintainer: Gabriel Assuncao <pacotesipd@ibge.gov.br>
Diff between SIPDIBGE versions 0.2.0 dated 2023-11-21 and 0.2.1 dated 2024-02-01
DESCRIPTION | 18 +++++++++++------- MD5 | 18 +++++++++--------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/sipd_conflicts.R | 6 +++--- R/sipd_deps.R | 6 +++--- R/sipd_logo.R | 6 +++--- R/sipd_packages.R | 6 +++--- R/sipd_sitrep.R | 6 +++--- R/sipd_update.R | 6 +++--- 10 files changed, 43 insertions(+), 34 deletions(-)
Title: 'REDCap' Data Management
Description: REDCap Data Management - REDCapDM is a comprehensive package that enables users to seamlessly handle data exported directly from REDCap or through API connections. This tool facilitates various functions, including data preprocessing, report generation for queries such as outliers or missing values, and tracking of identified queries. 'REDCap' (Research Electronic Data CAPture; <https://projectredcap.org>) is a web application developed at Vanderbilt University, designed for creating and managing online surveys and databases. The API connection provides users with the capability to programmatically access both data and project metadata, including the data dictionary, from the web.
Author: Joao Carmezim [aut, cre],
Pau Satorra [aut],
Judith Penafiel [aut],
Esther Garcia [aut],
Natalia Pallares [aut],
Cristian Tebe [aut]
Maintainer: Joao Carmezim <jcarmezim@igtp.cat>
Diff between REDCapDM versions 0.9.5 dated 2023-12-21 and 0.9.6 dated 2024-02-01
REDCapDM-0.9.5/REDCapDM/R/REDCapDM-package.R |only REDCapDM-0.9.6/REDCapDM/DESCRIPTION | 14 ++-- REDCapDM-0.9.6/REDCapDM/MD5 | 32 +++++----- REDCapDM-0.9.6/REDCapDM/NEWS.md | 7 ++ REDCapDM-0.9.6/REDCapDM/R/REDCapDM_PACKAGE.R |only REDCapDM-0.9.6/REDCapDM/R/check_queries.R | 1 REDCapDM-0.9.6/REDCapDM/R/rd_event.R | 2 REDCapDM-0.9.6/REDCapDM/R/rd_query.R | 2 REDCapDM-0.9.6/REDCapDM/R/redcap_data.R | 2 REDCapDM-0.9.6/REDCapDM/R/suplementary_package.R | 1 REDCapDM-0.9.6/REDCapDM/build/vignette.rds |binary REDCapDM-0.9.6/REDCapDM/inst/doc/Data-reading-and-processing.Rmd | 12 +-- REDCapDM-0.9.6/REDCapDM/inst/doc/Data-reading-and-processing.html | 12 +-- REDCapDM-0.9.6/REDCapDM/inst/doc/Queries.Rmd | 10 +-- REDCapDM-0.9.6/REDCapDM/inst/doc/Queries.html | 10 +-- REDCapDM-0.9.6/REDCapDM/man/REDCapDM-package.Rd | 5 - REDCapDM-0.9.6/REDCapDM/vignettes/Data-reading-and-processing.Rmd | 12 +-- REDCapDM-0.9.6/REDCapDM/vignettes/Queries.Rmd | 10 +-- 18 files changed, 68 insertions(+), 64 deletions(-)
Title: Downloading, Reading and Analyzing PNS Microdata
Description: Provides tools for downloading, reading and analyzing the National
Survey of Health - PNS, a household survey from Brazilian Institute
of Geography and Statistics - IBGE. The data must be downloaded from the official
website <https://www.ibge.gov.br/>. Further analysis must be made using package 'survey'.
Author: Gabriel Assuncao [aut, cre],
Luna Hidalgo [aut],
Douglas Braga [ctb],
Viviane Quintaes [ctb]
Maintainer: Gabriel Assuncao <pacotesipd@ibge.gov.br>
Diff between PNSIBGE versions 0.2.0 dated 2023-11-18 and 0.2.1 dated 2024-02-01
DESCRIPTION | 19 +++++----- MD5 | 20 +++++----- R/get_pns.R | 96 +++++++++++++++++++++++++++++++++++----------------- R/pns_deflator.R | 7 ++- R/pns_design.R | 7 ++- R/pns_labeller.R | 5 +- README.md | 2 - man/get_pns.Rd | 14 +++++-- man/pns_deflator.Rd | 3 + man/pns_design.Rd | 3 + man/pns_labeller.Rd | 3 + 11 files changed, 114 insertions(+), 65 deletions(-)
Title: Downloading, Reading and Analyzing PNDS Microdata - Package in
Development
Description: Provides tools for downloading, reading and analyzing the National
Survey of Demographic and Health - PNDS, a household survey from Brazilian Institute
of Geography and Statistics - IBGE. The data must be downloaded from the official
website <https://www.ibge.gov.br/>. Further analysis must be made using package 'survey'.
Author: Gabriel Assuncao [aut, cre],
Luna Hidalgo [aut],
Douglas Braga [ctb],
Viviane Quintaes [ctb]
Maintainer: Gabriel Assuncao <pacotesipd@ibge.gov.br>
Diff between PNDSIBGE versions 0.1.0 dated 2023-11-21 and 0.1.1 dated 2024-02-01
DESCRIPTION | 19 ++++++----- MD5 | 24 +++++++------- R/example.R | 2 - R/get_pnds.R | 85 ++++++++++++++++++++++++++++++++------------------- R/pnds_deflator.R | 9 +++-- R/pnds_design.R | 9 +++-- R/pnds_labeller.R | 7 ++-- R/read_pnds.R | 2 - README.md | 2 - man/get_pnds.Rd | 11 ++++-- man/pnds_deflator.Rd | 3 + man/pnds_design.Rd | 3 + man/pnds_labeller.Rd | 3 + 13 files changed, 108 insertions(+), 71 deletions(-)
Title: Downloading, Reading and Analyzing PNADC Microdata
Description: Provides tools for downloading, reading and analyzing the Continuous National
Household Sample Survey - PNADC, a household survey from Brazilian Institute
of Geography and Statistics - IBGE. The data must be downloaded from the official
website <https://www.ibge.gov.br/>. Further analysis must be made using package 'survey'.
Author: Douglas Braga [aut],
Gabriel Assuncao [aut, cre],
Luna Hidalgo [ctb],
Viviane Quintaes [ctb]
Maintainer: Gabriel Assuncao <pacotesipd@ibge.gov.br>
Diff between PNADcIBGE versions 0.7.4 dated 2023-11-18 and 0.7.5 dated 2024-02-01
DESCRIPTION | 19 ++-- MD5 | 20 ++-- R/get_pnadc.R | 221 ++++++++++++++++++++++++++++---------------------- R/pnadc_deflator.R | 6 - R/pnadc_design.R | 6 - R/pnadc_labeller.R | 4 README.md | 2 man/get_pnadc.Rd | 11 +- man/pnadc_deflator.Rd | 2 man/pnadc_design.Rd | 2 man/pnadc_labeller.Rd | 2 11 files changed, 166 insertions(+), 129 deletions(-)
Title: Phylogenetic Structural Equation Model
Description: Applies phylogenetic comparative methods (PCM) and phylogenetic trait imputation using
structural equation models (SEM), extending methods from Thorson et al. (2023) <doi:10.1111/2041-210X.14076>.
This implementation includes a minimal set of features, to
allow users to easily read all of the documentation and source code. PCM using SEM
includes phylogenetic linear models and structural equation models as nested submodels,
but also allows imputation of missing values. Features and comparison with other packages
are described in Thorson and van der Bijl (2023) <doi:10.1111/jeb.14234>.
Author: James Thorson [aut, cre] ,
Wouter van der Bijl [ctb]
Maintainer: James Thorson <James.Thorson@noaa.gov>
Diff between phylosem versions 1.1.2 dated 2023-12-20 and 1.1.3 dated 2024-02-01
phylosem-1.1.2/phylosem/R/TMBAIC.R |only phylosem-1.1.2/phylosem/R/fit_tmb.R |only phylosem-1.1.2/phylosem/inst/doc/comparison.pdf |only phylosem-1.1.2/phylosem/inst/doc/phylopath.pdf |only phylosem-1.1.2/phylosem/man/TMBAIC.Rd |only phylosem-1.1.2/phylosem/man/fit_tmb.Rd |only phylosem-1.1.2/phylosem/vignettes/comparison.html |only phylosem-1.1.2/phylosem/vignettes/phylopath.html |only phylosem-1.1.3/phylosem/DESCRIPTION | 13 phylosem-1.1.3/phylosem/MD5 | 95 +-- phylosem-1.1.3/phylosem/NAMESPACE | 4 phylosem-1.1.3/phylosem/NEWS.md | 5 phylosem-1.1.3/phylosem/R/coerce_methods.R | 4 phylosem-1.1.3/phylosem/R/compare_phylosem.R | 5 phylosem-1.1.3/phylosem/R/data.R | 2 phylosem-1.1.3/phylosem/R/phylosem.R | 148 ++++- phylosem-1.1.3/phylosem/README.md | 3 phylosem-1.1.3/phylosem/build/vignette.rds |binary phylosem-1.1.3/phylosem/inst/CITATION | 2 phylosem-1.1.3/phylosem/inst/Matrix-version | 2 phylosem-1.1.3/phylosem/inst/doc/comparison.R | 22 phylosem-1.1.3/phylosem/inst/doc/comparison.Rmd | 22 phylosem-1.1.3/phylosem/inst/doc/comparison.html |only phylosem-1.1.3/phylosem/inst/doc/demonstration.R | 22 phylosem-1.1.3/phylosem/inst/doc/demonstration.Rmd | 22 phylosem-1.1.3/phylosem/inst/doc/demonstration.html | 54 +- phylosem-1.1.3/phylosem/inst/doc/fisheries.R | 6 phylosem-1.1.3/phylosem/inst/doc/fisheries.Rmd | 8 phylosem-1.1.3/phylosem/inst/doc/fisheries.html | 8 phylosem-1.1.3/phylosem/inst/doc/phylopath.R | 4 phylosem-1.1.3/phylosem/inst/doc/phylopath.Rmd | 4 phylosem-1.1.3/phylosem/inst/doc/phylopath.html |only phylosem-1.1.3/phylosem/man/Mlifehist_ver1_0.Rd | 2 phylosem-1.1.3/phylosem/man/as_fitted_DAG.Rd | 34 - phylosem-1.1.3/phylosem/man/as_phylo4d.Rd | 46 - phylosem-1.1.3/phylosem/man/as_sem.Rd | 34 - phylosem-1.1.3/phylosem/man/average.Rd | 42 - phylosem-1.1.3/phylosem/man/average.compare_phylosem.Rd | 42 - phylosem-1.1.3/phylosem/man/best.Rd | 34 - phylosem-1.1.3/phylosem/man/best.compare_phylosem.Rd | 34 - phylosem-1.1.3/phylosem/man/choice.Rd | 38 - phylosem-1.1.3/phylosem/man/choice.compare_phylosem.Rd | 38 - phylosem-1.1.3/phylosem/man/coef.phylosem.Rd | 42 - phylosem-1.1.3/phylosem/man/compare_phylosem.Rd | 132 ++--- phylosem-1.1.3/phylosem/man/phylosem.Rd | 413 +++++++--------- phylosem-1.1.3/phylosem/man/phylosem_control.Rd |only phylosem-1.1.3/phylosem/man/print.phylosem.Rd | 38 - phylosem-1.1.3/phylosem/man/summary.phylosem.Rd | 40 - phylosem-1.1.3/phylosem/man/vcov.phylosem.Rd | 36 - phylosem-1.1.3/phylosem/tests/testthat/test-platform.R | 40 + phylosem-1.1.3/phylosem/vignettes/comparison.Rmd | 22 phylosem-1.1.3/phylosem/vignettes/demonstration.Rmd | 22 phylosem-1.1.3/phylosem/vignettes/fisheries.Rmd | 8 phylosem-1.1.3/phylosem/vignettes/phylopath.Rmd | 4 54 files changed, 862 insertions(+), 734 deletions(-)
Title: Downloading, Reading and Analyzing PNAD COVID19 Microdata
Description: Provides tools for downloading, reading and analyzing the COVID19 National
Household Sample Survey - PNAD COVID19, a household survey from Brazilian Institute
of Geography and Statistics - IBGE. The data must be downloaded from the official
website <https://www.ibge.gov.br/>. Further analysis must be made using package 'survey'.
Author: Gabriel Assuncao [aut, cre],
Luna Hidalgo [aut],
Douglas Braga [ctb],
Viviane Quintaes [ctb]
Maintainer: Gabriel Assuncao <pacotesipd@ibge.gov.br>
Diff between COVIDIBGE versions 0.2.1 dated 2023-11-18 and 0.2.2 dated 2024-02-01
DESCRIPTION | 19 +++++++----- MD5 | 20 ++++++------ R/covid_deflator.R | 7 ++-- R/covid_design.R | 7 ++-- R/covid_labeller.R | 5 +-- R/get_covid.R | 78 ++++++++++++++++++++++++++++++++------------------ README.md | 2 - man/covid_deflator.Rd | 3 + man/covid_design.Rd | 3 + man/covid_labeller.Rd | 3 + man/get_covid.Rd | 8 +++-- 11 files changed, 96 insertions(+), 59 deletions(-)
Title: Piecewise Exponential Distribution Prediction Model
Description: Build piecewise exponential survival model for study design (planning) and event/timeline prediction.
Author: Tianchen Xu [aut, cre]
Maintainer: Tianchen Xu <zjph602xutianchen@gmail.com>
Diff between PWEXP versions 0.4.3 dated 2023-12-17 and 0.4.4 dated 2024-02-01
DESCRIPTION | 6 ++--- MD5 | 16 +++++++-------- R/simdata.R | 46 ++++++++++++++++++++++++++++++++++----------- build/vignette.rds |binary inst/NEWS.Rd | 7 ++++++ inst/doc/Theory_Notes.html | 13 ++---------- man/predict.Rd | 8 +++---- man/sim_followup.Rd | 4 +-- man/simdata.Rd | 4 +-- 9 files changed, 64 insertions(+), 40 deletions(-)
Title: Penalty Learning
Description: Implementations of algorithms from
Learning Sparse Penalties for Change-point Detection
using Max Margin Interval Regression, by
Hocking, Rigaill, Vert, Bach
<http://proceedings.mlr.press/v28/hocking13.html>
published in proceedings of ICML2013.
Author: Toby Dylan Hocking
Maintainer: Toby Dylan Hocking <toby.hocking@r-project.org>
Diff between penaltyLearning versions 2023.8.31 dated 2023-09-06 and 2024.1.25 dated 2024-02-01
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 6 +++++- R/labelError.R | 6 +++--- tests/testthat/test-labelError.R | 10 +++++++++- 5 files changed, 24 insertions(+), 12 deletions(-)
More information about penaltyLearning at CRAN
Permanent link
Title: Package for Analysis of Space-Time Ecological Series
Description: Regularisation, decomposition and analysis of space-time series.
The pastecs R package is a PNEC-Art4 and IFREMER (Benoit Beliaeff
<Benoit.Beliaeff@ifremer.fr>) initiative to bring PASSTEC 2000 functionalities to R.
Author: Philippe Grosjean [aut, cre] ,
Frederic Ibanez [aut],
Michele Etienne [ctb]
Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
Diff between pastecs versions 1.3.21 dated 2018-03-15 and 1.4.2 dated 2024-02-01
pastecs-1.3.21/pastecs/inst/pastecs-Ex.R |only pastecs-1.4.2/pastecs/DESCRIPTION | 23 +- pastecs-1.4.2/pastecs/MD5 | 26 +- pastecs-1.4.2/pastecs/NAMESPACE | 2 pastecs-1.4.2/pastecs/R/daystoyears.R | 108 +++++----- pastecs-1.4.2/pastecs/R/extract.escouf.R | 52 ++--- pastecs-1.4.2/pastecs/R/pgleissberg.R | 178 +++++++++-------- pastecs-1.4.2/pastecs/R/trend.test.R | 133 ++++++------- pastecs-1.4.2/pastecs/R/tseries.R | 66 +++--- pastecs-1.4.2/pastecs/R/turnogram.R | 315 ++++++++++++++++++------------- pastecs-1.4.2/pastecs/build |only pastecs-1.4.2/pastecs/inst/doc |only pastecs-1.4.2/pastecs/man/GetUnitText.Rd | 60 ++--- pastecs-1.4.2/pastecs/man/regul.Rd | 264 ++++++++++++------------- pastecs-1.4.2/pastecs/vignettes |only 15 files changed, 663 insertions(+), 564 deletions(-)
Title: Named Capture to Data Tables
Description: User-friendly functions for extracting a data
table (row for each match, column for each group)
from non-tabular text data using regular expressions,
and for melting columns that match a regular expression.
Patterns are defined using a readable syntax
that makes it easy to build complex patterns
in terms of simpler, re-usable sub-patterns.
Named R arguments are translated to column names
in the output; capture groups without names are used
internally in order to provide a standard interface
to three regular expression C libraries (PCRE, RE2, ICU).
Output can also include numeric columns via
user-specified type conversion functions.
Author: Toby Dylan Hocking
Maintainer: Toby Dylan Hocking <toby.hocking@r-project.org>
Diff between nc versions 2023.8.24 dated 2023-08-31 and 2024.1.31 dated 2024-02-01
nc-2023.8.24/nc/po |only nc-2024.1.31/nc/DESCRIPTION | 8 nc-2024.1.31/nc/MD5 | 235 nc-2024.1.31/nc/NAMESPACE | 34 nc-2024.1.31/nc/NEWS | 392 - nc-2024.1.31/nc/R/alternatives.R | 358 nc-2024.1.31/nc/R/apply_type_funs.R | 152 nc-2024.1.31/nc/R/capture_all_str.R | 884 +- nc-2024.1.31/nc/R/capture_first_df.R | 302 nc-2024.1.31/nc/R/capture_first_glob.R | 223 nc-2024.1.31/nc/R/capture_first_vec.R | 236 nc-2024.1.31/nc/R/capture_longer_spec.R | 82 nc-2024.1.31/nc/R/capture_melt_multiple.R | 349 nc-2024.1.31/nc/R/capture_melt_single.R | 237 nc-2024.1.31/nc/R/check_names.R | 154 nc-2024.1.31/nc/R/field.R | 198 nc-2024.1.31/nc/R/group.R | 118 nc-2024.1.31/nc/R/measure.R | 343 nc-2024.1.31/nc/R/only_captures.R | 28 nc-2024.1.31/nc/R/quantifier.R | 128 nc-2024.1.31/nc/R/stop_for.R | 100 nc-2024.1.31/nc/R/try.R | 32 nc-2024.1.31/nc/R/var_args_list.R | 250 nc-2024.1.31/nc/build/vignette.rds |binary nc-2024.1.31/nc/inst/doc/v0-overview.R | 108 nc-2024.1.31/nc/inst/doc/v0-overview.Rmd | 237 nc-2024.1.31/nc/inst/doc/v0-overview.html | 755 +- nc-2024.1.31/nc/inst/doc/v1-capture-first.R | 428 - nc-2024.1.31/nc/inst/doc/v1-capture-first.Rmd | 854 +- nc-2024.1.31/nc/inst/doc/v1-capture-first.html | 1610 ++-- nc-2024.1.31/nc/inst/doc/v2-capture-all.R | 238 nc-2024.1.31/nc/inst/doc/v2-capture-all.Rmd | 518 - nc-2024.1.31/nc/inst/doc/v2-capture-all.html | 1262 ++- nc-2024.1.31/nc/inst/doc/v3-capture-melt.R | 298 nc-2024.1.31/nc/inst/doc/v3-capture-melt.Rmd | 642 - nc-2024.1.31/nc/inst/doc/v3-capture-melt.html | 1328 ++- nc-2024.1.31/nc/inst/doc/v4-comparisons.R | 1028 +- nc-2024.1.31/nc/inst/doc/v4-comparisons.Rmd | 1372 +-- nc-2024.1.31/nc/inst/doc/v4-comparisons.html | 2328 +++--- nc-2024.1.31/nc/inst/doc/v5-helpers.R | 174 nc-2024.1.31/nc/inst/doc/v5-helpers.Rmd | 366 - nc-2024.1.31/nc/inst/doc/v5-helpers.html | 818 +- nc-2024.1.31/nc/inst/doc/v6-engines.R | 40 nc-2024.1.31/nc/inst/doc/v6-engines.Rmd | 268 nc-2024.1.31/nc/inst/doc/v6-engines.html | 652 + nc-2024.1.31/nc/inst/doc/v7-capture-glob.R |only nc-2024.1.31/nc/inst/doc/v7-capture-glob.Rmd |only nc-2024.1.31/nc/inst/doc/v7-capture-glob.html |only nc-2024.1.31/nc/inst/extdata/MEDLINE_Fields.html | 3586 +++++----- nc-2024.1.31/nc/inst/extdata/PMC3045577.nbib | 136 nc-2024.1.31/nc/inst/extdata/RD12-0002_PP16HS_5sec_GM_F_1P.csv | 74 nc-2024.1.31/nc/inst/extdata/chip-seq-chunk-db.R | 22 nc-2024.1.31/nc/inst/extdata/chip-seq-chunk-db/H3K36me3_AM_immune/9/counts/McGill0101.bedGraph.head | 22 nc-2024.1.31/nc/inst/extdata/chip-seq-chunk-db/H3K36me3_TDH_other/1/counts/McGill0019.bedGraph.head | 22 nc-2024.1.31/nc/inst/extdata/chip-seq-chunk-db/H3K4me3_TDH_immune/9/counts/McGill0024.bedGraph.head | 22 nc-2024.1.31/nc/inst/extdata/chip-seq-chunk-db/H3K4me3_XJ_immune/2/counts/McGill0024.bedGraph.head | 22 nc-2024.1.31/nc/inst/extdata/compress-sizes.out | 12 nc-2024.1.31/nc/inst/extdata/compress-times.out | 50 nc-2024.1.31/nc/inst/extdata/namedCapture-refs.bib | 392 - nc-2024.1.31/nc/inst/extdata/vignette.Rmd | 460 - nc-2024.1.31/nc/inst/extdata/vignette.Rnw | 794 +- nc-2024.1.31/nc/inst/extdata/vignettes/v0-overview.Rmd | 204 nc-2024.1.31/nc/inst/extdata/vignettes/v1-capture-first.Rmd | 842 +- nc-2024.1.31/nc/inst/extdata/vignettes/v2-capture-all.Rmd | 506 - nc-2024.1.31/nc/inst/extdata/vignettes/v3-capture-melt.Rmd | 630 - nc-2024.1.31/nc/inst/extdata/vignettes/v4-comparisons.Rmd | 1360 +-- nc-2024.1.31/nc/inst/extdata/vignettes/v5-helpers.Rmd | 354 nc-2024.1.31/nc/inst/extdata/vignettes/v6-engines.Rmd | 256 nc-2024.1.31/nc/inst/test_engines.R | 38 nc-2024.1.31/nc/man/alternatives.Rd | 94 nc-2024.1.31/nc/man/alternatives_with_shared_groups.Rd | 158 nc-2024.1.31/nc/man/altlist.Rd | 106 nc-2024.1.31/nc/man/apply_type_funs.Rd | 52 nc-2024.1.31/nc/man/capture_all_str.Rd | 816 +- nc-2024.1.31/nc/man/capture_first_df.Rd | 236 nc-2024.1.31/nc/man/capture_first_glob.Rd | 223 nc-2024.1.31/nc/man/capture_first_vec.Rd | 182 nc-2024.1.31/nc/man/capture_longer_spec.Rd | 72 nc-2024.1.31/nc/man/capture_melt_multiple.Rd | 312 nc-2024.1.31/nc/man/capture_melt_single.Rd | 216 nc-2024.1.31/nc/man/check_df_names.Rd | 36 nc-2024.1.31/nc/man/check_names.Rd | 40 nc-2024.1.31/nc/man/collapse_some.Rd | 46 nc-2024.1.31/nc/man/field.Rd | 204 nc-2024.1.31/nc/man/group.Rd | 128 nc-2024.1.31/nc/man/measure.Rd | 64 nc-2024.1.31/nc/man/measure_multiple.Rd | 48 nc-2024.1.31/nc/man/measure_single.Rd | 48 nc-2024.1.31/nc/man/melt_list.Rd | 42 nc-2024.1.31/nc/man/only_captures.Rd | 40 nc-2024.1.31/nc/man/quantifier.Rd | 124 nc-2024.1.31/nc/man/stop_for_capture_same_as_id.Rd | 38 nc-2024.1.31/nc/man/stop_for_engine.Rd | 34 nc-2024.1.31/nc/man/stop_for_subject.Rd | 34 nc-2024.1.31/nc/man/subject_var_args.Rd | 34 nc-2024.1.31/nc/man/try_or_stop_print_pattern.Rd | 44 nc-2024.1.31/nc/man/var_args_list.Rd | 84 nc-2024.1.31/nc/tests/testthat.R | 4 nc-2024.1.31/nc/tests/testthat/test-CRAN-all.R | 248 nc-2024.1.31/nc/tests/testthat/test-CRAN-alternatives.R | 320 nc-2024.1.31/nc/tests/testthat/test-CRAN-df.R | 654 - nc-2024.1.31/nc/tests/testthat/test-CRAN-dt.R | 46 nc-2024.1.31/nc/tests/testthat/test-CRAN-errors.R | 288 nc-2024.1.31/nc/tests/testthat/test-CRAN-field.R | 72 nc-2024.1.31/nc/tests/testthat/test-CRAN-glob.R | 34 nc-2024.1.31/nc/tests/testthat/test-CRAN-group.R | 56 nc-2024.1.31/nc/tests/testthat/test-CRAN-longer.R | 54 nc-2024.1.31/nc/tests/testthat/test-CRAN-measure.R | 60 nc-2024.1.31/nc/tests/testthat/test-CRAN-melt.R | 254 nc-2024.1.31/nc/tests/testthat/test-CRAN-multiple.R | 904 +- nc-2024.1.31/nc/tests/testthat/test-CRAN-quantifier.R | 178 nc-2024.1.31/nc/tests/testthat/test-CRAN-subject.R | 98 nc-2024.1.31/nc/tests/testthat/test-CRAN-vec.R | 618 - nc-2024.1.31/nc/vignettes/v0-overview.Rmd | 237 nc-2024.1.31/nc/vignettes/v1-capture-first.Rmd | 854 +- nc-2024.1.31/nc/vignettes/v2-capture-all.Rmd | 518 - nc-2024.1.31/nc/vignettes/v3-capture-melt.Rmd | 642 - nc-2024.1.31/nc/vignettes/v4-comparisons.Rmd | 1372 +-- nc-2024.1.31/nc/vignettes/v5-helpers.Rmd | 366 - nc-2024.1.31/nc/vignettes/v6-engines.Rmd | 268 nc-2024.1.31/nc/vignettes/v7-capture-glob.Rmd |only 121 files changed, 21638 insertions(+), 20033 deletions(-)
Title: Asymptotic Timing
Description: Computing and visualizing comparative
asymptotic timings of different algorithms and code versions.
Also includes functionality for comparing empirical timings with
expected references such as linear or quadratic,
<https://en.wikipedia.org/wiki/Asymptotic_computational_complexity>
Also includes functionality for measuring asymptotic memory and other
quantities.
Author: Toby Hocking [aut, cre]
Maintainer: Toby Hocking <toby.hocking@r-project.org>
Diff between atime versions 2024.1.24 dated 2024-01-24 and 2024.1.31 dated 2024-02-01
atime-2024.1.24/atime/vignettes/binseg.html |only atime-2024.1.24/atime/vignettes/compare-data.table-tidyverse.html |only atime-2024.1.31/atime/DESCRIPTION | 6 atime-2024.1.31/atime/MD5 | 78 - atime-2024.1.31/atime/NAMESPACE | 38 atime-2024.1.31/atime/NEWS | 167 +- atime-2024.1.31/atime/R/atime.R | 384 ++--- atime-2024.1.31/atime/R/predict.R | 230 +-- atime-2024.1.31/atime/R/references.R | 358 ++-- atime-2024.1.31/atime/R/versions.R | 722 +++++----- atime-2024.1.31/atime/build/vignette.rds |binary atime-2024.1.31/atime/inst/doc/Custom_Plots.R | 144 - atime-2024.1.31/atime/inst/doc/Custom_Plots.Rmd | 204 +- atime-2024.1.31/atime/inst/doc/Custom_Plots.html | 514 +++---- atime-2024.1.31/atime/inst/doc/Custom_References.R | 114 - atime-2024.1.31/atime/inst/doc/Custom_References.Rmd | 250 +-- atime-2024.1.31/atime/inst/doc/Custom_References.html | 545 +++---- atime-2024.1.31/atime/inst/doc/Custom_Units.R | 108 - atime-2024.1.31/atime/inst/doc/Custom_Units.Rmd | 220 +-- atime-2024.1.31/atime/inst/doc/Custom_Units.html | 520 +++---- atime-2024.1.31/atime/inst/doc/cum_median.R | 62 atime-2024.1.31/atime/inst/doc/cum_median.Rmd | 108 - atime-2024.1.31/atime/inst/doc/cum_median.html | 410 ++--- atime-2024.1.31/atime/inst/doc/regex.R | 128 - atime-2024.1.31/atime/inst/doc/regex.Rmd | 196 +- atime-2024.1.31/atime/inst/doc/regex.html | 523 +++---- atime-2024.1.31/atime/man/atime.Rd | 128 - atime-2024.1.31/atime/man/atime_grid.Rd | 132 - atime-2024.1.31/atime/man/atime_pkg.Rd | 106 - atime-2024.1.31/atime/man/atime_versions.Rd | 172 +- atime-2024.1.31/atime/man/atime_versions_exprs.Rd | 174 +- atime-2024.1.31/atime/man/atime_versions_remove.Rd | 26 atime-2024.1.31/atime/man/glob_find_replace.Rd | 38 atime-2024.1.31/atime/man/references_best.Rd | 84 - atime-2024.1.31/atime/tests/testthat.R | 2 atime-2024.1.31/atime/tests/testthat/test-CRAN.R | 680 ++++----- atime-2024.1.31/atime/vignettes/Custom_Plots.Rmd | 204 +- atime-2024.1.31/atime/vignettes/Custom_References.Rmd | 250 +-- atime-2024.1.31/atime/vignettes/Custom_Units.Rmd | 220 +-- atime-2024.1.31/atime/vignettes/cum_median.Rmd | 108 - atime-2024.1.31/atime/vignettes/regex.Rmd | 196 +- 41 files changed, 4276 insertions(+), 4273 deletions(-)
Title: R Interface for 'Tableau' Services
Description: Provides an R interface for interacting with the 'Tableau' Server.
It allows users to perform various operations such as publishing workbooks, refreshing data extracts,
and managing users using the 'Tableau' REST API (see <https://help.tableau.com/current/api/rest_api/en-us/REST/rest_api_ref.htm> for details). Additionally,
it includes functions to perform manipulations on local 'Tableau' workbooks.
Author: Tomer Iwan [aut, cre],
Ruben Korvinus [ctb],
VU Analytics [cph]
Maintainer: Tomer Iwan <t.iwan@vu.nl>
Diff between vvtableau versions 0.4.0 dated 2024-01-09 and 0.5.0 dated 2024-02-01
DESCRIPTION | 6 LICENSE | 4 MD5 | 250 ++++---- NAMESPACE | 107 +-- NEWS.md | 34 - R/add_tags_to_view.R | 100 +-- R/add_tags_to_workbook.R | 100 +-- R/add_user_to_group.R | 84 +- R/add_user_to_site.R | 108 +-- R/adjust_tableau_font_style.R | 126 ++-- R/adjust_tableau_size.R | 134 ++-- R/authenticate_PAT.R | 161 +++-- R/authenticate_server.R | 175 +++--- R/check_dashboard_names.R | 132 ++-- R/create_group.R | 100 +-- R/delete_group.R | 64 +- R/download_datasource.R |only R/download_tableau_crosstab_excel.R | 54 - R/download_tableau_data.R | 68 +- R/download_view_filtered.R | 162 ++--- R/download_workbook_server.R | 74 +- R/download_workbook_server_pdf.R | 70 +- R/download_workbook_server_powerpoint.R | 70 +- R/get_actions.R | 78 +- R/get_folders.R | 58 - R/get_groups_for_user.R | 108 +-- R/get_hierarchy.R | 60 +- R/get_mobile_security_settings.R |only R/get_nodenames.R | 30 - R/get_parameters.R | 52 - R/get_revision.R | 36 - R/get_server_connected_applications.R | 74 +- R/get_server_datasources.R | 95 +-- R/get_server_groups.R | 93 +-- R/get_server_info.R | 86 +- R/get_server_jobs.R | 97 +-- R/get_server_location.R | 44 - R/get_server_projects.R | 97 +-- R/get_server_refresh_tasks.R | 78 +- R/get_server_schedules.R | 89 +-- R/get_server_user_favorites.R | 100 +-- R/get_server_users.R | 95 +-- R/get_server_views.R | 101 +-- R/get_server_workbooks.R | 97 +-- R/get_table_assets.R | 72 +- R/get_tableau_data_source.R | 40 - R/get_users_in_group.R | 99 +-- R/get_variable_folders.R | 48 - R/get_variables.R | 98 +-- R/get_workbook_id.R | 36 - R/get_workbook_tabs.R | 54 - R/get_workbook_urls.R |only R/make_rootnodes.R | 38 - R/query_user_on_site.R | 84 +- R/remove_user_from_group.R | 72 +- R/remove_user_from_site.R | 73 +- R/update_group.R | 124 ++-- R/update_user.R | 116 +-- R/utils-pipe.R | 28 README.md | 76 +- build/vignette.rds |binary inst/doc/download_filtered_views.R | 68 +- inst/doc/download_filtered_views.Rmd | 126 ++-- inst/doc/download_filtered_views.html | 812 +++++++++++++-------------- inst/doc/getting_started.R | 46 - inst/doc/getting_started.Rmd | 120 ++-- inst/doc/getting_started.html | 814 ++++++++++++++-------------- man/add_tags_to_view.Rd | 120 ++-- man/add_tags_to_workbook.Rd | 120 ++-- man/add_user_to_group.Rd | 120 ++-- man/add_user_to_site.Rd | 136 ++-- man/adjust_tableau_font_style.Rd | 54 - man/adjust_tableau_size.Rd | 108 +-- man/authenticate_PAT.Rd | 105 ++- man/authenticate_server.Rd | 125 ++-- man/check_dashboard_names.Rd | 78 +- man/create_group.Rd | 116 ++- man/delete_group.Rd | 75 +- man/download_datasource.Rd |only man/download_filtered_tableau_image.Rd | 130 ++-- man/download_tableau_crosstab_excel.Rd | 124 ++-- man/download_tableau_data.Rd | 114 ++- man/download_workbooks_server.Rd | 136 ++-- man/download_workbooks_server_pdf.Rd | 130 ++-- man/download_workbooks_server_powerpoint.Rd | 130 ++-- man/escape_special_chars.Rd | 34 - man/get_actions.Rd | 84 +- man/get_folders.Rd | 70 +- man/get_groups_for_user.Rd | 142 ++-- man/get_hierarchy.Rd | 70 +- man/get_mobile_security_settings.Rd |only man/get_nodenames.Rd | 70 +- man/get_parameter.Rd | 70 +- man/get_revision.Rd | 70 +- man/get_server_connected_apps.Rd | 116 ++- man/get_server_datasources.Rd | 133 ++-- man/get_server_groups.Rd | 133 ++-- man/get_server_info.Rd | 130 ++-- man/get_server_jobs.Rd | 133 ++-- man/get_server_location.Rd | 70 +- man/get_server_projects.Rd | 133 ++-- man/get_server_refresh_tasks.Rd | 116 ++- man/get_server_schedules.Rd | 133 ++-- man/get_server_user_favorites.Rd | 136 ++-- man/get_server_users.Rd | 133 ++-- man/get_server_views.Rd | 139 ++-- man/get_server_workbooks.Rd | 133 ++-- man/get_table_assets.Rd | 112 +-- man/get_tableau_data_source.Rd | 84 +- man/get_users_in_group.Rd | 136 ++-- man/get_variable_folders.Rd | 70 +- man/get_variables.Rd | 70 +- man/get_workbook_id.Rd | 70 +- man/get_workbook_tabs.Rd | 70 +- man/get_workbook_urls.Rd |only man/make_rootnodes.Rd | 70 +- man/pipe.Rd | 40 - man/query_user_on_site.Rd | 116 ++- man/remove_user_from_group.Rd | 120 ++-- man/remove_user_from_site.Rd | 120 ++-- man/row_to_name.Rd | 34 - man/row_to_query.Rd | 34 - man/tableau_base_url.Rd |only man/tableau_content_url.Rd |only man/tableau_password.Rd |only man/tableau_pat_name.Rd |only man/tableau_pat_secret.Rd |only man/tableau_username.Rd |only man/update_group.Rd | 166 ++--- man/update_user.Rd | 154 ++--- vignettes/download_filtered_views.Rmd | 126 ++-- vignettes/getting_started.Rmd | 120 ++-- 132 files changed, 6521 insertions(+), 6155 deletions(-)
Title: Record Linkage Toolkit
Description: Functions to assist in performing probabilistic record linkage and
deduplication: generating pairs, comparing records, em-algorithm for
estimating m- and u-probabilities
(I. Fellegi & A. Sunter (1969) <doi:10.1080/01621459.1969.10501049>,
T.N. Herzog, F.J. Scheuren, & W.E. Winkler (2007),
"Data Quality and Record Linkage Techniques", ISBN:978-0-387-69502-0),
forcing one-to-one matching. Can also be
used for pre- and post-processing for machine learning methods for record
linkage. Focus is on memory, CPU performance and flexibility.
Author: Jan van der Laan [aut, cre]
Maintainer: Jan van der Laan <r@eoos.dds.nl>
Diff between reclin2 versions 0.3.4 dated 2023-07-21 and 0.4.0 dated 2024-02-01
DESCRIPTION | 6 MD5 | 56 - NAMESPACE | 2 NEWS | 23 R/cluster_collect.R | 5 R/cluster_compare_vars.R | 8 R/cluster_predict_problinkem.R | 2 R/comparators.R | 10 R/compare_vars.R | 4 R/greedy.R | 2 R/predict_problink_em.R | 19 R/problink_em.R | 14 R/select_n_to_m.R | 6 R/select_threshold.R | 5 inst/doc/deduplication.html | 504 ++++++++----- inst/doc/introduction.html | 725 ++++++++++++-------- inst/doc/introduction.md | 2 inst/doc/record_linkage_using_machine_learning.html | 516 ++++++++------ inst/doc/using_a_cluster_for_record_linkage.html | 653 ++++++++++-------- man/cluster_collect.Rd | 5 man/comparators.Rd | 3 man/compare_vars.Rd | 2 man/predict.problink_em.Rd | 4 man/select_n_to_m.Rd | 6 man/select_threshold.Rd | 5 tests/test_cluster_compare_vars.R |only tests/test_compare_vars.R | 20 tests/test_greedy.R | 32 tests/test_problink_em.R |only vignettes/introduction.md | 2 30 files changed, 1549 insertions(+), 1092 deletions(-)
Title: Geospatial Regression Equation for European Nutrient Losses
(GREEN)
Description: Tools and methods to apply the model Geospatial Regression Equation
for European Nutrient losses (GREEN);
Grizzetti et al. (2005) <doi:10.1016/j.jhydrol.2004.07.036>;
Grizzetti et al. (2008);
Grizzetti et al. (2012) <doi:10.1111/j.1365-2486.2011.02576.x>;
Grizzetti et al. (2021) <doi:10.1016/j.gloenvcha.2021.102281>.
Author: A. Udias [aut],
B. Grizzetti [aut],
O. Vigiak [aut],
J. Gomez [aut],
C. Alfaro [aut, cre],
A. Aloe [aut]
Maintainer: C. Alfaro <c.alfarog@gmail.com>
Diff between GREENeR versions 0.1.3 dated 2023-11-16 and 1.0.0 dated 2024-02-01
GREENeR-0.1.3/GREENeR/man/preproc_scenSummary.Rd |only GREENeR-1.0.0/GREENeR/DESCRIPTION | 6 GREENeR-1.0.0/GREENeR/MD5 | 45 GREENeR-1.0.0/GREENeR/NAMESPACE | 9 GREENeR-1.0.0/GREENeR/NEWS.md | 8 GREENeR-1.0.0/GREENeR/R/optimization_metrics.R | 6 GREENeR-1.0.0/GREENeR/R/rgreen.R | 54 GREENeR-1.0.0/GREENeR/R/rgreen_plots.R | 804 +++++++----- GREENeR-1.0.0/GREENeR/inst/doc/GREENeR.R | 83 - GREENeR-1.0.0/GREENeR/inst/doc/GREENeR.Rmd | 256 ++- GREENeR-1.0.0/GREENeR/inst/doc/GREENeR.html | 378 ++--- GREENeR-1.0.0/GREENeR/man/LakeRetent_plot.Rd |only GREENeR-1.0.0/GREENeR/man/evolution_plot_area.Rd | 8 GREENeR-1.0.0/GREENeR/man/input_Tserie.Rd | 6 GREENeR-1.0.0/GREENeR/man/input_Tserie_area.Rd |only GREENeR-1.0.0/GREENeR/man/input_maps.Rd | 9 GREENeR-1.0.0/GREENeR/man/input_plot.Rd | 2 GREENeR-1.0.0/GREENeR/man/load_SA_map.Rd | 11 GREENeR-1.0.0/GREENeR/man/nutrient_maps.Rd | 14 GREENeR-1.0.0/GREENeR/man/nutrient_tserie.Rd | 15 GREENeR-1.0.0/GREENeR/man/nutrient_tserie_darea.Rd |only GREENeR-1.0.0/GREENeR/man/references_plot.Rd |only GREENeR-1.0.0/GREENeR/man/simobs_annual_plot.Rd | 36 GREENeR-1.0.0/GREENeR/vignettes/GREENeR.Rmd | 256 ++- GREENeR-1.0.0/GREENeR/vignettes/figures/LakeRetent_plot.png |only GREENeR-1.0.0/GREENeR/vignettes/figures/references.png |only GREENeR-1.0.0/GREENeR/vignettes/papers_GREENeR.bib | 13 27 files changed, 1219 insertions(+), 800 deletions(-)
Title: A Tool for Creating Custom Neural Networks in C++ and using Them
in R
Description: Contains a module to define neural networks from custom components and versions of Autoencoder, BP, LVQ, MAM NN.
Author: Vasilis Nikolaidis [aut, cph, cre]
Maintainer: Vasilis Nikolaidis <v.nikolaidis@uop.gr>
Diff between nnlib2Rcpp versions 0.2.3 dated 2023-09-04 and 0.2.4 dated 2024-02-01
DESCRIPTION | 6 - LICENSE | 4 - MD5 | 28 +++---- NAMESPACE | 8 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/manual.pdf |binary man/Autoencoder.Rd | 2 man/BP-class.Rd | 26 +++---- man/LVQs-class.Rd | 6 - man/MAM-class.Rd | 4 - man/NN-R-components.Rd | 75 ++++++++++---------- man/NN-class.Rd | 177 ++++++++++++++++++++++++------------------------- man/NN-components.Rd | 66 +++++++++--------- man/nnlib2Rcpp.Rd | 43 ++++++----- 15 files changed, 224 insertions(+), 221 deletions(-)
More information about NoviceDeveloperResources2 at CRAN
Permanent link
Title: Helper Functions for 'mlr3'
Description: Frequently used helper functions and assertions used in
'mlr3' and its companion packages. Comes with helper functions for
functional programming, for printing, to work with 'data.table', as
well as some generally useful 'R6' classes. This package also
supersedes the package 'BBmisc'.
Author: Michel Lang [cre, aut] ,
Patrick Schratz [aut]
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3misc versions 0.13.0 dated 2023-09-20 and 0.14.0 dated 2024-02-01
DESCRIPTION | 8 ++-- MD5 | 27 ++++++++-------- NAMESPACE | 5 +++ NEWS.md | 8 ++++ R/Dictionary.R | 36 +++++++++++++--------- R/calculate_hash.R | 63 ++++++++++++++++++++++++++------------- R/crate.R | 20 +++++++++++- R/leanify.R | 14 ++++++++ R/zzz.R | 1 man/Dictionary.Rd | 26 +++++++++------- man/calculate_hash.Rd | 18 +++-------- man/crate.Rd | 7 +++- man/hash_input.Rd |only tests/testthat/test_Dictionary.R | 22 ++++++------- tests/testthat/test_crate.R | 6 +++ 15 files changed, 171 insertions(+), 90 deletions(-)
Title: Nonlinear Time Series Models with Regime Switching
Description: Implements nonlinear autoregressive (AR) time series models. For univariate series, a non-parametric approach is available through additive nonlinear AR. Parametric modeling and testing for regime switching dynamics is available when the transition is either direct (TAR: threshold AR) or smooth (STAR: smooth transition AR, LSTAR). For multivariate series, one can estimate a range of TVAR or threshold cointegration TVECM models with two or three regimes. Tests can be conducted for TVAR as well as for TVECM (Hansen and Seo 2002 and Seo 2006).
Author: Antonio Fabio Di Narzo [aut] ,
Jose Luis Aznarte [ctb] ,
Matthieu Stigler [aut, cre]
Maintainer: Matthieu Stigler <Matthieu.Stigler@gmail.com>
Diff between tsDyn versions 11.0.4 dated 2023-01-26 and 11.0.4.1 dated 2024-02-01
tsDyn-11.0.4.1/tsDyn/DESCRIPTION | 6 ++-- tsDyn-11.0.4.1/tsDyn/MD5 | 26 +++++++++--------- tsDyn-11.0.4.1/tsDyn/build/vignette.rds |binary tsDyn-11.0.4.1/tsDyn/data/IIPUs.rda |binary tsDyn-11.0.4.1/tsDyn/data/UsUnemp.rda |binary tsDyn-11.0.4.1/tsDyn/data/barry.rda |only tsDyn-11.0.4.1/tsDyn/data/m.unrate.rda |binary tsDyn-11.0.4.1/tsDyn/data/setarTest_IIPUs_results.rda |binary tsDyn-11.0.4.1/tsDyn/data/zeroyld.rda |only tsDyn-11.0.4.1/tsDyn/data/zeroyldMeta.rda |binary tsDyn-11.0.4.1/tsDyn/inst/doc/ThCointOverview.pdf |binary tsDyn-11.0.4.1/tsDyn/inst/doc/tsDyn.pdf |binary tsDyn-11.0.4.1/tsDyn/man/nlar.struct.Rd | 1 tsDyn-11.0.4.1/tsDyn/man/regime.Rd | 2 - tsDyn-11.0.4/tsDyn/data/barry.R |only tsDyn-11.0.4/tsDyn/data/zeroyld.R |only 16 files changed, 18 insertions(+), 17 deletions(-)
Title: Cryptographic Hash and Extendable-Output Functions
Description: SHA-3 cryptographic hash and SHAKE256 extendable-output functions
(XOF). The SHA-3 Secure Hash Standard was published by the National
Institute of Standards and Technology (NIST) in 2015 at
<doi:10.6028/NIST.FIPS.202>. Fast and memory-efficient implementation using
the core algorithm from 'Mbed TLS' under the Trusted Firmware Project
<https://www.trustedfirmware.org/projects/mbed-tls/>.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between secretbase versions 0.1.0 dated 2024-01-22 and 0.2.0 dated 2024-02-01
DESCRIPTION | 8 +- MD5 | 22 +++---- NAMESPACE | 1 NEWS.md | 4 + R/base.R | 58 ++++++++++--------- README.md | 30 ++++++--- inst/CITATION | 2 man/sha3.Rd | 51 ++++++++-------- src/init.c | 1 src/secret.c | 176 ++++++++++++++++++++++++++++++---------------------------- src/secret.h | 13 +--- tests/tests.R | 15 +++- 12 files changed, 210 insertions(+), 171 deletions(-)
Title: Inference and Prediction of Generic Physiologically-Based
Kinetic Models
Description: Fit and simulate any kind of
physiologically-based kinetic ('PBK') models whatever the number of compartments.
Moreover, it allows to account for any link between pairs of compartments, as
well as any link of each of the compartments with the external medium. Such
generic PBK models have today applications in pharmacology (PBPK models) to
describe drug effects, in toxicology and ecotoxicology (PBTK models) to describe
chemical substance effects. In case of exposure to a parent compound (drug or
chemical) the 'rPBK' package allows to consider metabolites, whatever their number
and their phase (I, II, ...). Last but not least, package 'rPBK' can also be used for
dynamic flux balance analysis (dFBA) to deal with metabolic networks. See also
Charles et al. (2022) <doi:10.1101/2022.04.29.490045>.
Author: Virgile Baudrot [aut, cre],
Sandrine Charles [aut],
Christelle Lopes [aut],
Ophelia Gestin [ctb],
Dominique Lamonica [ctb],
Aurelie Siberchicot [ctb]
Maintainer: Virgile Baudrot <virgile.baudrot@qonfluens.com>
Diff between rPBK versions 0.2.2 dated 2023-09-11 and 0.2.3 dated 2024-02-01
DESCRIPTION | 8 MD5 | 22 R/plotFIT.R | 12 R/plotPPC.R | 6 R/rPBK-package.R | 9 README.md | 2 build/vignette.rds |binary inst/doc/Examples.R | 2 inst/doc/Examples.html | 144 +- man/rPBK-package.Rd | 6 src/stanExports_PBK_AD.h | 2312 +++++++++++++++++------------------ src/stanExports_export_interpolate.h | 1060 ++++++++-------- 12 files changed, 1786 insertions(+), 1797 deletions(-)
Title: Efficient Network Enrichment Analysis Test
Description: Includes functions and examples to compute NEAT, the Network
Enrichment Analysis Test described in Signorelli et al. (2016,
<DOI:10.1186/s12859-016-1203-6>).
Author: Mirko Signorelli [aut, cre, cph]
,
Veronica Vinciotti [ctb],
Ernst Wit [ctb]
Maintainer: Mirko Signorelli <msignorelli.rpackages@gmail.com>
Diff between neat versions 1.2.3 dated 2021-01-07 and 1.2.4 dated 2024-02-01
DESCRIPTION | 40 - MD5 | 19 build/vignette.rds |binary data/datalist | 2 data/yeast.RData |binary inst/CITATION | 37 - inst/NEWS.md | 75 +-- inst/doc/neat.R |only inst/doc/neat.Rmd | 386 ++++++++--------- inst/doc/neat.html | 1200 ++++++++++++++++++++++++++++------------------------- vignettes/neat.Rmd | 386 ++++++++--------- 11 files changed, 1131 insertions(+), 1014 deletions(-)
Title: Fractionally Differenced ARIMA aka ARFIMA(P,d,q) Models
Description: Maximum likelihood estimation of the parameters of a fractionally
differenced ARIMA(p,d,q) model (Haslett and Raftery, Appl.Statistics, 1989);
including inference and basic methods. Some alternative algorithms to estimate "H".
Author: Martin Maechler [aut, cre] ,
Chris Fraley [ctb, cph] ,
Friedrich Leisch [ctb] ,
Valderio Reisen [ctb] & fdSperio),
Artur Lemonte [ctb] & fdSperio),
Rob Hyndman [ctb] & fitted,
<https://orcid.org/0000-0002-2140-5352>)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between fracdiff versions 1.5-2 dated 2022-10-31 and 1.5-3 dated 2024-02-01
ChangeLog | 2 +- DESCRIPTION | 11 ++++++----- MD5 | 6 +++--- build/partial.rdb |binary 4 files changed, 10 insertions(+), 9 deletions(-)
Title: Bayesian Inference for Presence-Only Data
Description: Presence-Only data is best modelled with a Point Process Model.
The work of Moreira and Gamerman (2022) <doi:10.1214/21-AOAS1569> provides
a way to use exact Bayesian inference to model this type of data, which is
implemented in this package.
Author: Guido Alberti Moreira [cre, aut]
Maintainer: Guido Alberti Moreira <guidoalber@gmail.com>
Diff between bayesPO versions 0.4.1 dated 2023-09-26 and 0.5.0 dated 2024-02-01
DESCRIPTION | 15 +++-- MD5 | 27 +++++----- R/bayesPO.R | 6 -- build/vignette.rds |binary src/Makevars |only src/Makevars.win |only src/covariates.cpp | 76 +++++++++++++++++------------ src/covariates.h | 52 +++++++++++--------- src/full_conditionals.cpp | 5 - src/full_conditionals.h | 6 +- src/markovchain.cpp | 119 ++++++++++++++++++++++++++++++++++++++++++---- src/markovchain.h | 10 +-- src/runBayesPO.cpp | 6 +- src/safeR.h |only src/utils.cpp | 32 ++++++------ src/utils.h | 12 ++-- 16 files changed, 244 insertions(+), 122 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-06 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-03-03 2.1.1
2023-02-16 2.1.0
2022-11-03 2.0.3
2022-09-13 2.0.2
2022-09-01 2.0.1
Title: Respondent-Driven Sampling
Description: Provides functionality for carrying out estimation
with data collected using Respondent-Driven Sampling. This includes
Heckathorn's RDS-I and RDS-II estimators as well as Gile's Sequential
Sampling estimator. The package is part of the "RDS Analyst" suite of
packages for the analysis of respondent-driven sampling data.
See Gile and Handcock (2010) <doi:10.1111/j.1467-9531.2010.01223.x>,
Gile and Handcock (2015) <doi:10.1111/rssa.12091> and
Gile and Beaudry and Handcock and Ott (2018) <doi:10.1146/annurev-statistics-031017-100704>.
Author: Mark S. Handcock [aut, cre] ,
Krista J. Gile [aut],
Ian E. Fellows [aut],
W. Whipple Neely [ctb]
Maintainer: Mark S. Handcock <handcock@stat.ucla.edu>
Diff between RDS versions 0.9-7 dated 2023-08-20 and 0.9-9 dated 2024-02-01
DESCRIPTION | 17 +++--- MD5 | 73 ++++++++++++++-------------- NAMESPACE | 9 +++ R/LRT.trend.R | 14 ++--- R/MA.estimates.R | 104 ++++++++++++++++++++++------------------- R/MA.util.R | 20 +++---- R/RDS-package.R | 2 R/RDS.compare.proportions.R | 4 - R/bgk_kde.R | 2 R/bootstrap-intervals.R | 14 +++-- R/bootstrap.contingency.test.R | 4 - R/control.utilities.R | 20 +++++++ R/errorbar.R | 40 +++++++-------- R/estimate-plots.R | 2 R/estimate-utils.R | 4 - R/gile-bootstrap.R | 6 +- R/hcg-bootstrap.R | 8 +-- R/hcg-util.R | 2 R/homophily.R | 4 - R/impute.visibility.R |only R/incidence.R | 12 ++-- R/rds-HCG.R | 7 ++ R/rds-I.R | 18 +++++-- R/rds-II.R | 20 ++++--- R/rds-ss.R | 20 ++++--- R/rds.interval.estimate.R | 17 +++--- R/weights.R | 7 ++ build/partial.rdb |binary man/MA.estimates.Rd | 103 ++++++++++++++++++++++------------------ man/RDS-package.Rd | 2 man/RDS.HCG.estimates.Rd | 7 ++ man/RDS.I.estimates.Rd | 18 +++++-- man/RDS.II.estimates.Rd | 19 ++++--- man/RDS.SS.estimates.Rd | 20 ++++--- man/RDS.bootstrap.intervals.Rd | 10 +++ man/compute.weights.Rd | 7 ++ man/control.list.accessor.Rd |only man/impute.visibility.Rd |only man/rds.interval.estimate.Rd | 17 +++--- 39 files changed, 386 insertions(+), 267 deletions(-)
Title: Metabolomics-Based Models for Imputing Risk
Description: Provides an intuitive framework for ad-hoc statistical analysis of 1H-NMR metabolomics by Nightingale Health. It allows to easily explore new metabolomics measurements assayed by Nightingale Health, comparing the distributions with a large Consortium (BBMRI-nl); project previously published metabolic scores [<doi:10.1016/j.ebiom.2021.103764>, <doi:10.1161/CIRCGEN.119.002610>, <doi:10.1038/s41467-019-11311-9>, <doi:10.7554/eLife.63033>, <doi:10.1161/CIRCULATIONAHA.114.013116>, <doi:10.1007/s00125-019-05001-w>]; and calibrate the metabolic surrogate values to a desired dataset.
Author: Daniele Bizzarri [aut, cre] ,
Marcel Reinders [aut, ths] ,
Marian Beekman [aut] ,
Pieternella Eline Slagboom [aut, ths]
,
Erik van den Akker [aut, ths]
Maintainer: Daniele Bizzarri <d.bizzarri@lumc.nl>
Diff between MiMIR versions 1.4 dated 2022-05-23 and 1.5 dated 2024-02-01
DESCRIPTION | 6 +- MD5 | 16 +++--- R/predictors_functions.R | 6 +- R/utils.R | 1 README.md | 56 +++++++++++----------- inst/shinyApp/tabs/tab_download/server_download.R | 3 - inst/shinyApp/tabs/tab_qc/server_qc.R | 24 ++++----- inst/shinyApp/tabs/tab_upload/server_upload.R | 10 +-- man/getvol.Rd | 3 - 9 files changed, 61 insertions(+), 64 deletions(-)
Title: Simple and Configurable Tables in 'HTML', 'LaTeX', 'Markdown',
'Word', 'PNG', 'PDF', and 'Typst' Formats
Description: Create highly customized tables with this simple and dependency-free package. Data frames can be converted to 'HTML', 'LaTeX', 'Markdown', 'Word', 'PNG', 'PDF', or 'Typst' tables. The user interface is minimalist and easy to learn. The syntax concise. 'HTML' tables can be customized using the flexible 'Bootstrap' framework, and 'LaTeX' code with the 'tabularray' package.
Author: Vincent Arel-Bundock [aut, cre]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between tinytable versions 0.0.2 dated 2024-01-26 and 0.0.3 dated 2024-02-01
DESCRIPTION | 15 +- MD5 | 79 ++++++++----- NEWS.md | 13 ++ R/build_tt.R | 17 ++ R/escape.R |only R/finalize_grid.R | 21 +++ R/finalize_typst.R |only R/footnotes.R |only R/format_tt.R | 23 +++ R/group_bootstrap.R | 20 ++- R/group_grid.R | 6 - R/group_tabularray.R | 13 +- R/group_tt.R | 20 +++ R/group_typst.R |only R/print.R | 36 +++++- R/sanity.R | 28 ++++ R/save_tt.R | 11 + R/style_bootstrap.R | 1 R/style_tabularray.R | 2 R/style_tt.R | 31 +++-- R/style_typst.R |only R/tt.R | 39 +++--- R/tt_bootstrap.R | 13 ++ R/tt_tabularray.R | 2 R/tt_typst.R |only build/partial.rdb |binary inst/templates/typst.typ | 87 +++------------ inst/tinytest/_tinysnapshot/docx-issue98_01.txt | 2 inst/tinytest/_tinysnapshot/escape-html.txt |only inst/tinytest/_tinysnapshot/escape-latex.txt |only inst/tinytest/_tinysnapshot/group_tt-3level_md.txt |only inst/tinytest/_tinysnapshot/group_tt-3level_tex.txt |only inst/tinytest/_tinysnapshot/group_tt-3level_typ.txt |only inst/tinytest/_tinysnapshot/html-heatmap.rds |only inst/tinytest/_tinysnapshot/html-issue58.rds |only inst/tinytest/_tinysnapshot/html-issue88.rds |only inst/tinytest/_tinysnapshot/html-issue92.rds |only inst/tinytest/_tinysnapshot/html-striped.rds |only inst/tinytest/_tinysnapshot/html-striped_orange.rds |only inst/tinytest/_tinysnapshot/html-vectorized_color_j.rds |only inst/tinytest/_tinysnapshot/markdown-group_tt.txt | 2 inst/tinytest/_tinysnapshot/notes-latex_cell_markers.txt |only inst/tinytest/_tinysnapshot/typst-complicated.txt |only inst/tinytest/test-escape.R |only inst/tinytest/test-group_tt.R |only inst/tinytest/test-notes.R |only inst/tinytest/test-typst.R |only man/format_tt.Rd | 7 - man/group_tt.Rd | 22 +++ man/print.tinytable.Rd |only man/save_tt.Rd | 5 man/style_tt.Rd | 14 +- man/tt.Rd | 22 +++ 53 files changed, 371 insertions(+), 180 deletions(-)
Title: Sparse Group Variable Selection for Gene-Environment
Interactions in the Longitudinal Study
Description: Recently, regularized variable selection has emerged as a powerful tool to identify and dissect gene-environment interactions. Nevertheless, in longitudinal studies with high dimensional genetic factors, regularization methods for G×E interactions have not been systematically developed. In this package, we provide the implementation of sparse group variable selection, based on both the quadratic inference function (QIF) and generalized estimating equation (GEE), to accommodate the bi-level selection for longitudinal G×E studies with high dimensional genomic features. Alternative methods conducting only the group or individual level selection have also been included. The core modules of the package have been developed in C++.
Author: Fei Zhou, Yuwen Liu, Xi Lu, Jie Ren, Cen Wu
Maintainer: Fei Zhou <fei.zhou@outlook.com>
Diff between springer versions 0.1.8 dated 2023-09-04 and 0.1.9 dated 2024-02-01
DESCRIPTION | 6 - MD5 | 26 ++-- NEWS.md | 3 R/RcppExports.R | 22 +-- R/dmcp.R | 6 - R/penalty.R | 210 ++++++++++++++++++------------------- R/springer-package.R | 134 +++++++++++------------ R/springer.R | 272 ++++++++++++++++++++++++------------------------ README.md | 114 ++++++++++---------- build/partial.rdb |binary man/dmcp.Rd | 6 - man/penalty.Rd | 4 man/springer-package.Rd | 2 man/springer.Rd | 8 - 14 files changed, 408 insertions(+), 405 deletions(-)
Title: Exploratory Data Analysis for the 'spatstat' Family
Description: Functionality for exploratory data analysis and nonparametric analysis of
spatial data, mainly spatial point patterns,
in the 'spatstat' family of packages.
(Excludes analysis of spatial data on a linear network,
which is covered by the separate package 'spatstat.linnet'.)
Methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported.
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb],
Warick Brown [cph],
Achmad Choiruddin [ctb],
Jean-Francois Coeurjolly [ctb],
Ottmar Cronie [ctb],
Tilman Davies [ctb, cph],
Julian Gi [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.explore versions 3.2-5 dated 2023-10-22 and 3.2-6 dated 2024-02-01
DESCRIPTION | 10 +-- MD5 | 67 +++++++++++++---------- NAMESPACE | 17 ++++++ NEWS | 53 ++++++++++++++++++ R/Jest.R | 4 - R/boyce.R |only R/bw.optim.R | 35 ++++++++++-- R/bw.ppl.R | 43 +++++++++++---- R/compileCDF.R |only R/density.ppp.R | 25 ++++++-- R/densityAdaptiveKernel.R | 59 ++++++++++++++++++++- R/fv.R | 63 ++++++++-------------- R/kmrs.R | 95 ---------------------------------- R/resolve.lambda.R | 18 ++++-- R/scanstat.R | 7 -- R/smooth.ppp.R | 26 +++++++-- R/spatialQuantile.R |only R/stieltjes.R |only R/studpermutest.R | 4 - R/sysdata.rda |binary R/thresholding.R | 5 + inst/doc/packagesizes.txt | 1 man/SpatialMedian.ppp.Rd |only man/SpatialQuantile.Rd |only man/SpatialQuantile.ppp.Rd |only man/boyce.Rd |only man/bw.ppl.Rd | 21 ++++++- man/bw.smoothppp.Rd | 21 +++++++ man/density.splitppp.Rd | 7 +- man/densityAdaptiveKernel.splitppp.Rd |only man/densityHeat.ppp.Rd | 14 ++--- man/quantile.density.Rd | 10 --- man/relrisk.ppp.Rd | 16 +++++ man/spatstat.explore-internal.Rd | 11 +++ man/stieltjes.Rd | 43 ++++++++------- tests/testsD.R | 53 ++++++++---------- tests/testsEtoF.R | 2 tests/testsK.R | 24 ++++++++ tests/testsNtoO.R | 2 39 files changed, 470 insertions(+), 286 deletions(-)
More information about spatstat.explore at CRAN
Permanent link
Title: An R Autograding Extension for Otter-Grader
Description: An R autograding extension for Otter-Grader (<https://otter-grader.readthedocs.io>). It supports
grading R scripts, R Markdown documents, and R Jupyter Notebooks.
Author: Christopher Pyles [aut, cre] ,
UC Berkeley Data Science Education Program [cph]
Maintainer: Christopher Pyles <cpyles@berkeley.edu>
Diff between ottr versions 1.4.0 dated 2023-07-19 and 1.5.0 dated 2024-02-01
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/export.R | 28 +++++++++++++++++++++++----- R/save_notebook.R | 5 ++--- man/export.Rd | 5 ++++- tests/testthat/test_export.R | 35 +++++++++++++++++++++++++++++++++-- 6 files changed, 70 insertions(+), 19 deletions(-)
Title: Multi-Level Vector Autoregression
Description: Estimates the multi-level vector autoregression model on time-series data.
Three network structures are obtained: temporal networks, contemporaneous
networks and between-subjects networks.
Author: Sacha Epskamp [aut, cre],
Marie K. Deserno [aut],
Laura F. Bringmann [aut],
Myrthe Veenman [ctb]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between mlVAR versions 0.5.1 dated 2023-05-16 and 0.5.2 dated 2024-02-01
mlVAR-0.5.1/mlVAR/man/mlVARsim0.Rd |only mlVAR-0.5.2/mlVAR/DESCRIPTION | 6 mlVAR-0.5.2/mlVAR/MD5 | 13 - mlVAR-0.5.2/mlVAR/NAMESPACE | 4 mlVAR-0.5.2/mlVAR/NEWS | 3 mlVAR-0.5.2/mlVAR/R/S3Methods0.R | 74 +++++----- mlVAR-0.5.2/mlVAR/R/mlVARmodel.R | 256 +++++++++++++++++------------------ mlVAR-0.5.2/mlVAR/man/plotMethod0.Rd | 3 8 files changed, 179 insertions(+), 180 deletions(-)
Title: Models for Skewed Count Distributions Relevant to Networks
Description: Likelihood-based inference for skewed count distributions, typically of degrees used in network modeling. "degreenet" is a part of the "statnet" suite of packages for network analysis. See Jones and Handcock <doi:10.1098/rspb.2003.2369>.
Author: Mark S. Handcock [aut, cre, cph]
Maintainer: Mark S. Handcock <handcock@stat.ucla.edu>
Diff between degreenet versions 1.3-3 dated 2018-03-26 and 1.3-5 dated 2024-02-01
DESCRIPTION | 16 +++++++---- LICENSE | 2 - MD5 | 63 +++++++++++++++++++++++----------------------- build |only inst/CITATION | 9 ++++-- man/acmpmle.Rd | 2 - man/adqemle.Rd | 2 - man/aplnmle.Rd | 2 - man/arplnmle.Rd | 2 - man/awarmle.Rd | 2 - man/ayulemle.Rd | 2 - man/bsdp.Rd | 2 - man/bsnb.Rd | 2 - man/bspln.Rd | 2 - man/bswar.Rd | 2 - man/bsyule.Rd | 2 - man/degreenet-internal.Rd | 35 ++++++++++--------------- man/degreenet-package.Rd | 6 ++-- man/gyulemle.Rd | 2 - man/llgyule.Rd | 2 - man/llgyuleall.Rd | 2 - man/llpln.Rd | 2 - man/llyule.Rd | 2 - man/llyuleall.Rd | 2 - man/reedmolloy.Rd | 14 ++++------ man/ryule.Rd | 2 - man/simcmp.Rd | 2 - man/simdp.Rd | 2 - man/simnb.Rd | 2 - man/simpln.Rd | 2 - man/simwar.Rd | 2 - man/simyule.Rd | 2 - man/sweden.Rd | 2 - 33 files changed, 98 insertions(+), 97 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-03-22 1.0.1
Title: Tools for Case 3 Best-Worst Scaling
Description: Provides basic functions that support an implementation of multi-profile case (Case 3) best-worst scaling (BWS). Case 3 BWS is a question-based survey method to elicit people's preferences for attribute levels. Case 3 BWS constructs various combinations of attribute levels (profiles) and then asks respondents to select the best and worst profiles in each choice set. A main function creates a dataset for the analysis from the choice sets and the responses to the questions. For details on Case 3 BWS, refer to Louviere et al. (2015) <doi:10.1017/CBO9781107337855>.
Author: Hideo Aizaki
Maintainer: Hideo Aizaki <azk-r@spa.nifty.com>
Diff between support.BWS3 versions 0.2-0 dated 2019-12-02 and 0.2-1 dated 2024-02-01
DESCRIPTION | 10 ++++++---- MD5 | 10 ++++++---- NEWS | 3 +++ data |only inst/CITATION | 12 ++++++------ man/milk.Rd |only man/support.BWS3-package.Rd | 16 +++++++--------- 7 files changed, 28 insertions(+), 23 deletions(-)
Title: Group Factor Analysis
Description: Several group factor analysis algorithms are implemented, including Canonical Correlation-based Estimation by Choi et al. (2021) <doi:10.1016/j.jeconom.2021.09.008> , Generalised Canonical Correlation Estimation by Lin and Shin (2022) <doi:10.2139/ssrn.4295429>, Circularly Projected Estimation by Chen (2022) <doi:10.1080/07350015.2022.2051520>, and the approach we recently proposed, named Aggregated Projection Method.
Author: Jiaqi Hu [cre, aut],
Xueqin Wang [aut]
Maintainer: Jiaqi Hu <hujiaqi@mail.ustc.edu.cn>
Diff between GrFA versions 0.1.0 dated 2023-11-22 and 0.1.1 dated 2024-02-01
GrFA-0.1.0/GrFA/R/WPE.R |only GrFA-0.1.0/GrFA/man/WPE.Rd |only GrFA-0.1.1/GrFA/DESCRIPTION | 10 +++++----- GrFA-0.1.1/GrFA/MD5 | 10 +++++----- GrFA-0.1.1/GrFA/NAMESPACE | 2 +- GrFA-0.1.1/GrFA/R/APM.R |only GrFA-0.1.1/GrFA/man/APM.Rd |only GrFA-0.1.1/GrFA/man/UShouseprice.Rd | 2 +- 8 files changed, 12 insertions(+), 12 deletions(-)
Title: Resampling Algorithms for 'mlr3' Framework
Description: A supervised learning algorithm inputs a train set,
and outputs a prediction function, which can be used on a test set.
If each data point belongs to a group
(such as geographic region, year, etc), then
how do we know if it is possible to train on one group, and predict
accurately on another group? Cross-validation can be used to determine
the extent to which this is possible, by first assigning fold IDs from
1 to K to all data (possibly using stratification, usually by group
and label). Then we loop over test sets (group/fold combinations),
train sets (same group, other groups, all groups), and compute
test/prediction accuracy for each combination. Comparing
test/prediction accuracy between same and other, we can determine the
extent to which it is possible (perfect if same/other have similar
test accuracy for each group; other is usually somewhat less accurate
than same; other can be just as bad as featureless baseline when the
groups have different patterns).
For more information,
[...truncated...]
Author: Toby Hocking [aut, cre] ,
Michel Lang [ctb] ,
Bernd Bischl [ctb] ,
Jakob Richter [ctb] ,
Patrick Schratz [ctb] ,
Giuseppe Casalicchio [ctb] ,
Stefan Coors [ctb] ,
Quay Au [ctb] ,
Martin Binder [ctb],
Florian Pfisterer [ctb] ,
Raphael Sonabend [ctb] , [...truncated...]
Maintainer: Toby Hocking <toby.hocking@r-project.org>
Diff between mlr3resampling versions 2024.1.8 dated 2024-01-08 and 2024.1.23 dated 2024-02-01
DESCRIPTION | 8 MD5 | 28 - NEWS | 4 R/ResamplingVariableSizeTrainCV.R | 76 +- build/vignette.rds |binary inst/doc/ResamplingSameOtherCV.R | 4 inst/doc/ResamplingSameOtherCV.Rmd | 4 inst/doc/ResamplingSameOtherCV.html | 201 +------ inst/doc/ResamplingVariableSizeTrainCV.R | 2 inst/doc/ResamplingVariableSizeTrainCV.Rmd | 2 inst/doc/ResamplingVariableSizeTrainCV.html | 763 ++++++---------------------- man/ResamplingVariableSizeTrainCV.Rd | 3 tests/testthat/test-CRAN.R | 47 + vignettes/ResamplingSameOtherCV.Rmd | 4 vignettes/ResamplingVariableSizeTrainCV.Rmd | 2 15 files changed, 340 insertions(+), 808 deletions(-)
More information about mlr3resampling at CRAN
Permanent link
Title: Matrices in Data Frames
Description: Provides functions to collapse a tidy data frame into matrices in a data frame
and expand a data frame of matrices into a tidy data frame.
Author: Matthew Heun [aut, cre]
Maintainer: Matthew Heun <matthew.heun@me.com>
Diff between matsindf versions 0.4.7 dated 2023-12-21 and 0.4.8 dated 2024-02-01
DESCRIPTION | 18 +- LICENSE | 2 MD5 | 30 +-- NEWS.md | 80 +++++---- R/matsindf_apply.R | 10 + R/utilities.R | 87 +++++++--- inst/CITATION | 8 inst/doc/iris_pca.html | 4 inst/doc/matsindf.html | 134 +++++++-------- inst/doc/midf_apply_primer.html | 4 man/matsindf_apply.Rd | 9 + man/rowcolval_to_mat.Rd | 6 tests/testthat/test-collapse.R | 299 ++++++++++++++++++++--------------- tests/testthat/test-expand.R | 38 ++++ tests/testthat/test-matsindf_apply.R | 26 +++ tests/testthat/test-utilities.R | 39 ++-- 16 files changed, 505 insertions(+), 289 deletions(-)