Wed, 28 Feb 2024

Package growthPheno updated to version 2.1.24 with previous version 2.1.23 dated 2023-10-24

Title: Functional Analysis of Phenotypic Growth Data to Smooth and Extract Traits
Description: Assists in the plotting and functional smoothing of traits measured over time and the extraction of features from these traits, implementing the SET (Smoothing and Extraction of Traits) method described in Brien et al. (2020) Plant Methods, 16. Smoothing of growth trends for individual plants using natural cubic smoothing splines or P-splines is available for removing transient effects and segmented smoothing is available to deal with discontinuities in growth trends. There are graphical tools for assessing the adequacy of trait smoothing, both when using this and other packages, such as those that fit nonlinear growth models. A range of per-unit (plant, pot, plot) growth traits or features can be extracted from the data, including single time points, interval growth rates and other growth statistics, such as maximum growth or days to maximum growth. The package also has tools adapted to inputting data from high-throughput phenotyping facilities, such from a Lemna-Tec Scananalyzer 3D ( [...truncated...]
Author: Chris Brien [aut, cre]
Maintainer: Chris Brien <chris.brien@adelaide.edu.au>

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Package farr updated to version 0.3.0 with previous version 0.2.39 dated 2023-12-13

Title: Data and Code for Financial Accounting Research
Description: Handy functions and data to support a course book for accounting research. Gow, Ian and Tongqing Ding (2022) 'Accounting Research: An Introductory Course' <https://iangow.github.io/far_book/>.
Author: Ian Gow [aut, cre]
Maintainer: Ian Gow <iandgow@gmail.com>

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Package sdmTMB updated to version 0.4.3 with previous version 0.4.2 dated 2024-01-17

Title: Spatial and Spatiotemporal SPDE-Based GLMMs with 'TMB'
Description: Implements spatial and spatiotemporal GLMMs (Generalized Linear Mixed Effect Models) using 'TMB', 'fmesher', and the SPDE (Stochastic Partial Differential Equation) Gaussian Markov random field approximation to Gaussian random fields. One common application is for spatially explicit species distribution models (SDMs). See Anderson et al. (2022) <doi:10.1101/2022.03.24.485545>.
Author: Sean C. Anderson [aut, cre] , Eric J. Ward [aut] , Philina A. English [aut] , Lewis A. K. Barnett [aut] , James T. Thorson [aut, cph] , Joe Watson [ctb] , Julia Indivero [ctb] , Jillian C. Dunic [ctb] , Cole C. Monnahan [ctb, cph] , Mollie Brooks [ct [...truncated...]
Maintainer: Sean C. Anderson <sean@seananderson.ca>

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Package saros updated to version 1.0.4 with previous version 1.0.1 dated 2024-01-26

Title: Semi-Automatic Reporting of Ordinary Surveys
Description: Produces highly customized reports, primarily intended for survey research. Building on 'Quarto' (<https://quarto.org>), it generates draft chapters of all specified dependent/independent variables, which can be further edited by hand, containing figures, tables and analyses (currently only uni-/bivariate tests of equivalent means/proportions). The feature 'mesos'-reports offer tailor-made batch report production where e.g. an institution can compare itself to all other participants. Publication tools are also included, such as password generation for 'mesos'-report sections on a 'Quarto' Website.
Author: Stephan Daus [aut, cre, cph] , Nordic Institute for The Studies of Innovation, Research and Education [fnd], Kristiania University College [fnd]
Maintainer: Stephan Daus <stephus.daus@gmail.com>

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Package renv updated to version 1.0.5 with previous version 1.0.4 dated 2024-02-21

Title: Project Environments
Description: A dependency management toolkit for R. Using 'renv', you can create and manage project-local R libraries, save the state of these libraries to a 'lockfile', and later restore your library as required. Together, these tools can help make your projects more isolated, portable, and reproducible.
Author: Kevin Ushey [aut, cre] , Hadley Wickham [aut] , Posit Software, PBC [cph, fnd]
Maintainer: Kevin Ushey <kevin@rstudio.com>

Diff between renv versions 1.0.4 dated 2024-02-21 and 1.0.5 dated 2024-02-28

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Package tidyclust updated to version 0.2.1 with previous version 0.2.0 dated 2023-09-25

Title: A Common API to Clustering
Description: A common interface to specifying clustering models, in the same style as 'parsnip'. Creates unified interface across different functions and computational engines.
Author: Emil Hvitfeldt [aut, cre] , Kelly Bodwin [aut], Posit Software, PBC [cph, fnd]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>

Diff between tidyclust versions 0.2.0 dated 2023-09-25 and 0.2.1 dated 2024-02-28

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Package Seurat updated to version 5.0.2 with previous version 5.0.1 dated 2023-11-17

Title: Tools for Single Cell Genomics
Description: A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.
Author: Andrew Butler [ctb] , Saket Choudhary [ctb] , Charlotte Darby [ctb] , Jeff Farrell [ctb], Isabella Grabski [ctb] , Christoph Hafemeister [ctb] , Yuhan Hao [ctb] , Austin Hartman [ctb] , Paul Hoffman [ctb] , Jaison Jain [ctb] , Longda Jiang [ctb] , Ma [...truncated...]
Maintainer: Rahul Satija <seurat@nygenome.org>

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Package gompertztrunc updated to version 0.1.2 with previous version 0.1.1 dated 2022-12-23

Title: Conducting Maximum Likelihood Estimation with Truncated Mortality Data
Description: Estimates hazard ratios and mortality differentials for doubly-truncated data without population denominators. This method is described in Goldstein et al. (2023) <doi:10.1007/s11113-023-09785-z>.
Author: Casey Breen [aut] , Maria Osborne [aut, cre], Joshua R. Goldstein [aut]
Maintainer: Maria Osborne <mariaosborne@berkeley.edu>

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Package DrugUtilisation updated to version 0.5.1 with previous version 0.5.0 dated 2024-02-10

Title: Summarise Patient-Level Drug Utilisation in Data Mapped to the OMOP Common Data Model
Description: Summarise patient-level drug utilisation cohorts using data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. New users and prevalent users cohorts can be generated and their characteristics, indication and drug use summarised.
Author: Marti Catala [aut, cre] , Mike Du [aut] , Yuchen Guo [aut] , Kim Lopez-Guell [aut] , Edward Burn [ctb] , Xintong Li [ctb] , Marta Alcalde-Herraiz [ctb]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>

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Package colorednoise updated to version 1.1.2 with previous version 1.1.1 dated 2023-09-22

Title: Simulate Temporally Autocorrelated Populations
Description: Temporally autocorrelated populations are correlated in their vital rates (growth, death, etc.) from year to year. It is very common for populations, whether they be bacteria, plants, or humans, to be temporally autocorrelated. This poses a challenge for stochastic population modeling, because a temporally correlated population will behave differently from an uncorrelated one. This package provides tools for simulating populations with white noise (no temporal autocorrelation), red noise (positive temporal autocorrelation), and blue noise (negative temporal autocorrelation). The algebraic formulation for autocorrelated noise comes from Ruokolainen et al. (2009) <doi:10.1016/j.tree.2009.04.009>. Models for unstructured populations and for structured populations (matrix models) are available.
Author: July Pilowsky [aut, cre]
Maintainer: July Pilowsky <pilowskyj@caryinstitute.org>

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 colorednoise-1.1.2/colorednoise/man/multi_rnorm.Rd                |   56 
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 colorednoise-1.1.2/colorednoise/tests/testthat.R                  |    8 
 colorednoise-1.1.2/colorednoise/tests/testthat/test_noise.R       |   88 
 colorednoise-1.1.2/colorednoise/tests/testthat/test_simulations.R |   90 
 colorednoise-1.1.2/colorednoise/vignettes/noise.Rmd               |  340 +-
 30 files changed, 2112 insertions(+), 2081 deletions(-)

More information about colorednoise at CRAN
Permanent link

Package scCustomize updated to version 2.1.2 with previous version 2.1.1 dated 2024-02-24

Title: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing
Description: Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using 'R'. 'scCustomize' aims to provide 1) Customized visualizations for aid in ease of use and to create more aesthetic and functional visuals. 2) Improve speed/reproducibility of common tasks/pieces of code in scRNA-seq analysis with a single or group of functions. For citation please use: Marsh SE (2021) "Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing" <doi:10.5281/zenodo.5706430> RRID:SCR_024675.
Author: Samuel Marsh [aut, cre] , Ming Tang [ctb], Velina Kozareva [ctb], Lucas Graybuck [ctb]
Maintainer: Samuel Marsh <samuel.marsh@childrens.harvard.edu>

Diff between scCustomize versions 2.1.1 dated 2024-02-24 and 2.1.2 dated 2024-02-28

 DESCRIPTION                    |    8 ++++----
 MD5                            |   10 +++++-----
 NEWS.md                        |   14 ++++++++++++++
 R/Nebulosa_Plotting.R          |   14 ++++++++++++--
 man/Plot_Density_Custom.Rd     |    2 +-
 man/Plot_Density_Joint_Only.Rd |    2 +-
 6 files changed, 37 insertions(+), 13 deletions(-)

More information about scCustomize at CRAN
Permanent link

Package RcppEigen updated to version 0.3.4.0.0 with previous version 0.3.3.9.4 dated 2023-11-02

Title: 'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library
Description: R and 'Eigen' integration using 'Rcpp'. 'Eigen' is a C++ template library for linear algebra: matrices, vectors, numerical solvers and related algorithms. It supports dense and sparse matrices on integer, floating point and complex numbers, decompositions of such matrices, and solutions of linear systems. Its performance on many algorithms is comparable with some of the best implementations based on 'Lapack' and level-3 'BLAS'. The 'RcppEigen' package includes the header files from the 'Eigen' C++ template library. Thus users do not need to install 'Eigen' itself in order to use 'RcppEigen'. Since version 3.1.1, 'Eigen' is licensed under the Mozilla Public License (version 2); earlier version were licensed under the GNU LGPL version 3 or later. 'RcppEigen' (the 'Rcpp' bindings/bridge to 'Eigen') is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Douglas Bates, Dirk Eddelbuettel, Romain Francois, and Yixuan Qiu; the authors of Eigen for the included version of Eigen
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RcppEigen versions 0.3.3.9.4 dated 2023-11-02 and 0.3.4.0.0 dated 2024-02-28

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 RcppEigen-0.3.4.0.0/RcppEigen/ChangeLog                                                                             |   18 
 RcppEigen-0.3.4.0.0/RcppEigen/DESCRIPTION                                                                           |    8 
 RcppEigen-0.3.4.0.0/RcppEigen/MD5                                                                                   |  812 -
 RcppEigen-0.3.4.0.0/RcppEigen/inst/NEWS.Rd                                                                          |   10 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/doc/RcppEigen-Introduction.pdf                                                   |binary
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/Cholesky                                                           |    1 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/CholmodSupport                                                     |    1 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/Core                                                               |  378 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/Eigenvalues                                                        |    1 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/Geometry                                                           |    9 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/Householder                                                        |    1 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/Jacobi                                                             |    1 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/KLUSupport                                                         |only
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/LU                                                                 |    7 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/OrderingMethods                                                    |    3 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/PaStiXSupport                                                      |    1 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/QR                                                                 |    1 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/QtAlignedMalloc                                                    |    1 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/SVD                                                                |    1 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/Sparse                                                             |    2 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/SparseCholesky                                                     |    8 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/SparseLU                                                           |    4 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Cholesky/LDLT.h                                                |   69 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Cholesky/LLT.h                                                 |   62 
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 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/Array.h                                                   |  110 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/ArrayBase.h                                               |    2 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/ArrayWrapper.h                                            |   42 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/Assign.h                                                  |    2 
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 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/Assign_MKL.h                                              |   20 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/BandMatrix.h                                              |   32 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/Block.h                                                   |  116 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/BooleanRedux.h                                            |   60 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/CommaInitializer.h                                        |   10 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/CoreEvaluators.h                                          |  597 -
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/CoreIterators.h                                           |    5 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/CwiseBinaryOp.h                                           |   43 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/CwiseNullaryOp.h                                          |  171 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/CwiseUnaryOp.h                                            |   12 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/CwiseUnaryView.h                                          |   22 
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 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/DenseCoeffsBase.h                                         |   46 
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 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/Diagonal.h                                                |   44 
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 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/DiagonalProduct.h                                         |    2 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/Dot.h                                                     |   20 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/EigenBase.h                                               |   19 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/ForceAlignedAccess.h                                      |   12 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/Fuzzy.h                                                   |    6 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/GeneralProduct.h                                          |   30 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/GenericPacketMath.h                                       |  744 +
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/GlobalFunctions.h                                         |   73 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/IO.h                                                      |   47 
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 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/Map.h                                                     |   14 
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 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/Random.h                                                  |   38 
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 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/Select.h                                                  |   14 
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 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/functors/NullaryFunctors.h                                |   61 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/functors/StlFunctors.h                                    |   34 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/functors/UnaryFunctors.h                                  |  369 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h                        | 1652 ++-
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 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h                  |    8 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h             |    2 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/products/GeneralMatrixVector.h                            |  895 -
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/products/Parallelizer.h                                   |   32 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/products/SelfadjointMatrixMatrix.h                        |   29 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/products/SelfadjointMatrixVector.h                        |   14 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/products/SelfadjointProduct.h                             |    4 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/products/SelfadjointRank2Update.h                         |    9 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h                         |    6 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/products/TriangularSolverMatrix.h                         |    8 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/products/TriangularSolverVector.h                         |   23 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/util/BlasUtil.h                                           |  332 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/util/ConfigureVectorization.h                             |only
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/util/Constants.h                                          |   34 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/util/DisableStupidWarnings.h                              |   19 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/util/ForwardDeclarations.h                                |   32 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/util/IndexedViewHelper.h                                  |only
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/util/IntegralConstant.h                                   |only
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/util/MKL_support.h                                        |    9 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/util/Macros.h                                             |  911 +
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/util/Memory.h                                             |  274 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/util/Meta.h                                               |  458 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h                             |    4 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/util/ReshapedHelper.h                                     |only
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/util/StaticAssert.h                                       |   13 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/util/SymbolicIndex.h                                      |only
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Core/util/XprHelper.h                                          |   78 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Eigenvalues/ComplexEigenSolver.h                               |    2 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Eigenvalues/ComplexSchur.h                                     |    2 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Eigenvalues/EigenSolver.h                                      |    4 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h                |    2 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Eigenvalues/HessenbergDecomposition.h                          |    4 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h                            |    4 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Eigenvalues/RealQZ.h                                           |   15 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Eigenvalues/RealSchur.h                                        |   15 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h                           |  117 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h                               |   35 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Geometry/AlignedBox.h                                          |  104 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Geometry/AngleAxis.h                                           |    8 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Geometry/EulerAngles.h                                         |    6 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Geometry/Homogeneous.h                                         |   26 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Geometry/Hyperplane.h                                          |    2 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Geometry/OrthoMethods.h                                        |    5 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Geometry/ParametrizedLine.h                                    |   41 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Geometry/Quaternion.h                                          |   66 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Geometry/Rotation2D.h                                          |    6 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Geometry/Scaling.h                                             |   26 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Geometry/Transform.h                                           |  151 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Geometry/Translation.h                                         |   12 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Geometry/arch/Geometry_SIMD.h                                  |only
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Householder/BlockHouseholder.h                                 |   11 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Householder/Householder.h                                      |   12 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Householder/HouseholderSequence.h                              |  173 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h                  |   30 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h                              |   30 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h                     |   27 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h                    |   88 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h                         |  111 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h                   |   90 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h          |   22 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h                        |   20 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/Jacobi/Jacobi.h                                                |   41 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/KLUSupport                                                     |only
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/LU/Determinant.h                                               |   54 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/LU/FullPivLU.h                                                 |   72 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/LU/InverseImpl.h                                               |   33 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/LU/PartialPivLU.h                                              |  124 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/LU/arch/InverseSize4.h                                         |only
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/OrderingMethods/Amd.h                                          |   24 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/OrderingMethods/Eigen_Colamd.h                                 |  582 -
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/OrderingMethods/Ordering.h                                     |   16 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/PaStiXSupport/PaStiXSupport.h                                  |    2 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/PardisoSupport/PardisoSupport.h                                |   19 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/QR/ColPivHouseholderQR.h                                       |   61 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/QR/CompleteOrthogonalDecomposition.h                           |  127 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/QR/FullPivHouseholderQR.h                                      |   81 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/QR/HouseholderQR.h                                             |   71 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h                             |   28 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SVD/BDCSVD.h                                                   |  187 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SVD/JacobiSVD.h                                                |   36 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SVD/SVDBase.h                                                  |  103 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SVD/UpperBidiagonalization.h                                   |    6 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseCholesky/SimplicialCholesky.h                            |   24 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h                       |   47 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseCore/CompressedStorage.h                                 |   16 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h                   |   12 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseCore/SparseAssign.h                                      |  108 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseCore/SparseBlock.h                                       |   82 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseCore/SparseCompressedBase.h                              |   51 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h                               |   26 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseCore/SparseCwiseUnaryOp.h                                |    4 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseCore/SparseDenseProduct.h                                |   38 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseCore/SparseMatrix.h                                      |  134 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseCore/SparseMatrixBase.h                                  |   17 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseCore/SparseProduct.h                                     |   14 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseCore/SparseRef.h                                         |   14 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseCore/SparseSelfAdjointView.h                             |    3 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseCore/SparseUtil.h                                        |    8 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseCore/SparseVector.h                                      |    2 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseLU/SparseLU.h                                            |  170 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseLU/SparseLU_Memory.h                                     |    2 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h                           |   78 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseLU/SparseLU_column_dfs.h                                 |    4 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseLU/SparseLU_gemm_kernel.h                                |    2 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseLU/SparseLU_panel_bmod.h                                 |    2 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SparseQR/SparseQR.h                                            |   25 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/StlSupport/StdDeque.h                                          |   16 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/StlSupport/StdList.h                                           |    4 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/StlSupport/StdVector.h                                         |    4 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/SuperLUSupport/SuperLUSupport.h                                |   14 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/UmfPackSupport/UmfPackSupport.h                                |  214 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/misc/lapacke.h                                                 |    9 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/plugins/ArrayCwiseBinaryOps.h                                  |   28 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/plugins/ArrayCwiseUnaryOps.h                                   |  166 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/plugins/BlockMethods.h                                         |  926 +
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/plugins/CommonCwiseUnaryOps.h                                  |   14 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/plugins/IndexedViewMethods.h                                   |only
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/plugins/MatrixCwiseBinaryOps.h                                 |    8 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/plugins/MatrixCwiseUnaryOps.h                                  |   10 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/Eigen/src/plugins/ReshapedMethods.h                                      |only
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/AdolcForward                                           |    5 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/AlignedVector3                                         |   12 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/ArpackSupport                                          |    9 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/AutoDiff                                               |    6 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/BVH                                                    |    6 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/Tensor                                           |   77 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/TensorSymmetry                                   |    6 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/ThreadPool                                       |   21 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/README.md                             |  371 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/Tensor.h                              |   29 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorArgMax.h                        |   78 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorAssign.h                        |   94 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorBase.h                          |  268 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorBlock.h                         |only
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorBroadcasting.h                  |  767 +
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorChipping.h                      |  278 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorConcatenation.h                 |   84 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorContraction.h                   |  623 +
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorContractionBlocking.h           |   41 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorContractionCuda.h               | 1393 ---
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorContractionGpu.h                |only
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorContractionMapper.h             |  238 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorContractionSycl.h               |only
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorContractionThreadPool.h         | 1578 ++-
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorConversion.h                    |  269 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorConvolution.h                   |  190 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorConvolutionSycl.h               |only
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorCostModel.h                     |   10 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorCustomOp.h                      |   90 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorDevice.h                        |   69 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceCuda.h                    |  337 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceDefault.h                 |   33 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceGpu.h                     |only
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceSycl.h                    | 1070 ++
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceThreadPool.h              |  347 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorDimensions.h                    |  162 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorEvalTo.h                        |  111 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorEvaluator.h                     |  634 +
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorExecutor.h                      |  695 +
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorExpr.h                          |   23 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorFFT.h                           |   86 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorFixedSize.h                     |   34 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorForcedEval.h                    |  190 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorForwardDeclarations.h           |   90 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorFunctors.h                      |  191 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorGenerator.h                     |  149 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaDefines.h             |only
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaUndefines.h           |only
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorImagePatch.h                    |  164 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorIndexList.h                     |  203 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorInflation.h                     |   28 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorInitializer.h                   |    4 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorIntDiv.h                        |   28 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorLayoutSwap.h                    |   71 
 RcppEigen-0.3.4.0.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorMacros.h                        |   52 
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Package ibmsunburst updated to version 0.1.4 with previous version 0.1.3 dated 2023-10-30

Title: Generate Personality Insights Sunburst Diagrams
Description: Generates Personality Insights sunburst diagrams based on 'IBM Watson' Personality Insights service output.
Author: Colin Gillespie [aut, cre], Steph Locke [aut] , IBM [cph] , Hendrik Feddersen [fnd] , Kent Russell [aut], Maelle Salmon [ctb] , Jumping Rivers [fnd]
Maintainer: Colin Gillespie <colin@jumpingrivers.com>

Diff between ibmsunburst versions 0.1.3 dated 2023-10-30 and 0.1.4 dated 2024-02-28

 DESCRIPTION               |   12 ++++----
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 NEWS.md                   |    4 ++
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 5 files changed, 46 insertions(+), 42 deletions(-)

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New package gscramble with initial version 1.0.1
Package: gscramble
Title: Simulating Admixed Genotypes Without Replacement
Version: 1.0.1
Description: A genomic simulation approach for creating biologically informed individual genotypes from empirical data that 1) samples alleles from populations without replacement, 2) segregates alleles based on species-specific recombination rates. 'gscramble' is a flexible simulation approach that allows users to create pedigrees of varying complexity in order to simulate admixed genotypes. Furthermore, it allows users to track haplotype blocks from the source populations through the pedigrees.
License: CC0
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5.0)
Imports: dplyr, ggplot2, glue, magrittr, purrr, readr, rlang, stats, stringr, tibble, tidyr
Suggests: cowplot, knitr, rmarkdown, tidyverse
VignetteBuilder: knitr
URL: https://github.com/eriqande/gscramble
BugReports: https://github.com/eriqande/gscramble/issues
NeedsCompilation: no
Packaged: 2024-02-27 23:41:47 UTC; eriq
Author: Eric C. Anderson [aut, cre] , Rachael M. Giglio [aut] , Matt G. DeSaix [aut] , Timothy J. Smyser [aut]
Maintainer: Eric C. Anderson <eric.anderson@noaa.gov>
Repository: CRAN
Date/Publication: 2024-02-28 19:10:05 UTC

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New package flap with initial version 0.1.0
Package: flap
Title: Forecast Linear Augmented Projection
Version: 0.1.0
Description: The Forecast Linear Augmented Projection (flap) method reduces forecast variance by adjusting the forecasts of multivariate time series to be consistent with the forecasts of linear combinations (components) of the series by projecting all forecasts onto the space where the linear constraints are satisfied. The forecast variance can be reduced monotonically by including more components. For a given number of components, the flap method achieves maximum forecast variance reduction among linear projections.
License: GPL (>= 3)
Encoding: UTF-8
URL: https://github.com/FinYang/flap
BugReports: https://github.com/FinYang/flap/issues/
Imports: corpcor, utils
Suggests: forecast, stats
NeedsCompilation: no
Packaged: 2024-02-27 22:36:38 UTC; fyan0012
Author: Yangzhuoran Fin Yang [aut, cre]
Maintainer: Yangzhuoran Fin Yang <yangyangzhuoran@gmail.com>
Repository: CRAN
Date/Publication: 2024-02-28 19:10:09 UTC

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Package datamods updated to version 1.4.5 with previous version 1.4.4 dated 2024-02-08

Title: Modules to Import and Manipulate Data in 'Shiny'
Description: 'Shiny' modules to import data into an application or 'addin' from various sources, and to manipulate them after that.
Author: Victor Perrier [aut, cre, cph], Fanny Meyer [aut], Samra Goumri [aut], Zauad Shahreer Abeer [aut], Eduard Szoecs [ctb]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>

Diff between datamods versions 1.4.4 dated 2024-02-08 and 1.4.5 dated 2024-02-28

 DESCRIPTION         |    6 +++---
 MD5                 |    8 ++++----
 NEWS.md             |    6 ++++++
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 man/select-group.Rd |    2 +-
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Package apexcharter updated to version 0.4.2 with previous version 0.4.1 dated 2023-06-14

Title: Create Interactive Chart with the JavaScript 'ApexCharts' Library
Description: Provides an 'htmlwidgets' interface to 'apexcharts.js'. 'Apexcharts' is a modern JavaScript charting library to build interactive charts and visualizations with simple API. 'Apexcharts' examples and documentation are available here: <https://apexcharts.com/>.
Author: Victor Perrier [aut, cre], Fanny Meyer [aut], Juned Chhipa [cph] , Mike Bostock [cph]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>

Diff between apexcharter versions 0.4.1 dated 2023-06-14 and 0.4.2 dated 2024-02-28

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 man/unhcr_ts.Rd                             |    2 
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New package rgl.cry with initial version 0.1.0
Package: rgl.cry
Title: 'cry' and 'rgl' — Applications in Crystallography
Version: 0.1.0
Description: Visualizing crystal structures and selected area electron diffraction (SAED) patterns. It provides functions cry_demo() and dp_demo() to load a file in 'CIF' (Crystallographic Information Framework) formats and display crystal structures and electron diffraction patterns. The function dp_demo() also performs simple simulation of powder X-ray diffraction (PXRD) patterns, and the results can be saved to a file in the working directory. The package has been tested on several platforms, including Linux on 'Crostini' with a Core™ m3-8100Y Chromebook, I found that even on this low-powered platform, the performance was acceptable. T. Hanashima (2001) <https://www2.kek.jp/imss/pf/tools/sasaki/sinram/sinram.html> Todd Helmenstine (2019) <https://sciencenotes.org/molecule-atom-colors-cpk-colors/> Wikipedia contributors (2023) <https://en.wikipedia.org/w/index.php?title=Atomic_radius&oldid=1179864711>.
License: GPL (>= 2)
Encoding: UTF-8
Imports: cry, rgl, utils
Suggests: knitr, rmarkdown, spelling, testthat (>= 3.0.0)
URL: https://github.com/SaitouToshihide/rgl.cry/, https://saitoutoshihide.github.io/rgl.cry/
Language: en-US
NeedsCompilation: no
Packaged: 2024-02-27 16:59:05 UTC; saitoutoshihide
Author: Toshihide Saitou [aut, cre, cph]
Maintainer: Toshihide Saitou <saitou.toshihide@gmail.com>
Depends: R (>= 3.5.0)
Repository: CRAN
Date/Publication: 2024-02-28 18:30:02 UTC

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New package optimizeR with initial version 1.0.5
Package: optimizeR
Title: Unified Framework for Numerical Optimizers
Version: 1.0.5
Description: Provides a unified object-oriented framework for numerical optimizers in R. Allows for both minimization and maximization with any optimizer, optimization over more than one function argument, measuring of computation time, setting a time limit for long optimization tasks.
License: GPL (>= 3)
Encoding: UTF-8
Suggests: knitr, pracma, rmarkdown, testthat
URL: https://loelschlaeger.de/optimizeR/, https://github.com/loelschlaeger/optimizeR/
BugReports: https://github.com/loelschlaeger/optimizeR/issues
Depends: R (>= 4.0.0)
Imports: checkmate, cli, lbfgsb3c, oeli (>= 0.4.1), R6, stats, TestFunctions, ucminf, utils
NeedsCompilation: no
Packaged: 2024-02-27 08:33:07 UTC; Oelschlaeger
Author: Lennart Oelschlaeger [aut, cre] , Marius Oetting [ctb]
Maintainer: Lennart Oelschlaeger <oelschlaeger.lennart@gmail.com>
Repository: CRAN
Date/Publication: 2024-02-28 18:20:02 UTC

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New package gie with initial version 0.1.1
Package: gie
Title: API Wrapper for the Natural Gas Transparency Platforms of Gas Infrastructure Europe
Version: 0.1.1
Description: Providing access to the API for Gas Infrastructure Europe's natural gas transparency platforms <https://agsi.gie.eu/> and <https://alsi.gie.eu/>. Lets the user easily download metadata on companies and gas storage units covered by the API as well as the respective data on regional, country, company or facility level.
License: MIT + file LICENSE
Imports: curl, dplyr, httr, lubridate, magrittr, purrr, stringr
Suggests: rvest, testthat, textutils, vcr (>= 0.6.0)
Encoding: UTF-8
Depends: R (>= 2.10)
LazyData: true
NeedsCompilation: no
Packaged: 2024-02-27 20:05:04 UTC; buhly
Author: Yannik Buhl [aut, cre]
Maintainer: Yannik Buhl <ybuhl@posteo.de>
Repository: CRAN
Date/Publication: 2024-02-28 18:40:02 UTC

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New package fdarep with initial version 0.1.0
Package: fdarep
Title: Two-Dimensional FPCA, Marginal FPCA, and Product FPCA for Repeated Functional Data
URL: https://github.com/functionaldata/tFDArep
BugReports: https://github.com/functionaldata/tFDArep/issues
Version: 0.1.0
Encoding: UTF-8
Date: 2024-02-26
Maintainer: Poorbita Kundu <pkundu@ucdavis.edu>
Description: Provides an implementation of two-dimensional functional principal component analysis (FPCA), Marginal FPCA, and Product FPCA for repeated functional data. Marginal and Product FPCA implementations are done for both dense and sparsely observed functional data. References: Chen, K., Delicado, P., & Müller, H. G. (2017) <doi:10.1111/rssb.12160>. Chen, K., & Müller, H. G. (2012) <doi:10.1080/01621459.2012.734196>. Hall, P., Müller, H.G. and Wang, J.L. (2006) <doi:10.1214/009053606000000272>. Yao, F., Müller, H. G., & Wang, J. L. (2005) <doi:10.1198/016214504000001745>.
License: BSD_3_clause + file LICENSE
Imports: Rcpp (>= 0.11.5), fdapace, Hmisc, stats, MASS, Matrix, pracma, numDeriv
LinkingTo: Rcpp, RcppEigen
Suggests: testthat (>= 3.0.0)
NeedsCompilation: yes
Packaged: 2024-02-27 16:03:14 UTC; poorbita
Author: Poorbita Kundu [aut, cre], Changbo Zhou [aut], Kehui Chen [aut], Pedro Delicado [aut], Su I Iao [aut], Hang Chen [aut], Han Chen [aut], Muqing Cui [aut], Hans-Georg Mueller [cph, ths, aut]
Repository: CRAN
Date/Publication: 2024-02-28 18:30:06 UTC

More information about fdarep at CRAN
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Package DImodels updated to version 1.3.2 with previous version 1.3.1 dated 2024-01-24

Title: Diversity-Interactions (DI) Models
Description: The 'DImodels' package is suitable for analysing data from biodiversity and ecosystem function studies using the Diversity-Interactions (DI) modelling approach introduced by Kirwan et al. (2009) <doi:10.1890/08-1684.1>. Suitable data will contain proportions for each species and a community-level response variable, and may also include additional factors, such as blocks or treatments. The package can perform data manipulation tasks, such as computing pairwise interactions (the DI_data() function), can perform an automated model selection process (the autoDI() function) and has the flexibility to fit a wide range of user-defined DI models (the DI() function).
Author: Rafael de Andrade Moral [aut, cre], John Connolly [aut], Rishabh Vishwakarma [ctb], Caroline Brophy [aut]
Maintainer: Rafael de Andrade Moral <rafael.deandrademoral@mu.ie>

Diff between DImodels versions 1.3.1 dated 2024-01-24 and 1.3.2 dated 2024-02-28

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New package CureAuxSP with initial version 0.0.1
Package: CureAuxSP
Title: Mixture Cure Models with Auxiliary Subgroup Survival Probabilities
Version: 0.0.1
Author: Jie Ding [aut, cre] , Jialiang Li [aut] , Mengxiu Zhang [aut] , Xiaoguang Wang [aut]
Maintainer: Jie Ding <dingjie@mail.dlut.edu.cn>
Description: Estimate mixture cure models with subgroup survival probabilities as auxiliary information. A reference of the underlying methods is Jie Ding, Jialiang Li and Xiaoguang Wang (2024) <doi:10.1093/jrsssc/qlad106>.
License: GPL (>= 2)
Encoding: UTF-8
Imports: MASS, survival, lars, mvtnorm, methods, TCGAbiolinks
URL: <https://github.com/biostat-jieding/CureAuxSP>
NeedsCompilation: no
Packaged: 2024-02-27 21:04:54 UTC; biost
Repository: CRAN
Date/Publication: 2024-02-28 18:50:02 UTC

More information about CureAuxSP at CRAN
Permanent link

New package ARMALSTM with initial version 0.1.0
Package: ARMALSTM
Title: Fitting of Hybrid ARMA-LSTM Models
Description: The real-life time series data are hardly pure linear or nonlinear. Merging a linear time series model like the autoregressive moving average (ARMA) model with a nonlinear neural network model such as the Long Short-Term Memory (LSTM) model can be used as a hybrid model for more accurate modeling purposes. Both the autoregressive integrated moving average (ARIMA) and autoregressive fractionally integrated moving average (ARFIMA) models can be implemented. Details can be found in Box et al. (2015, ISBN: 978-1-118-67502-1) and Hochreiter and Schmidhuber (1997) <doi:10.1162/neco.1997.9.8.1735>.
Author: Debopam Rakshit [aut, cre], Ritwika Das [aut], Dwaipayan Bardhan [aut]
Maintainer: Debopam Rakshit <rakshitdebopam@yahoo.com>
Version: 0.1.0
Encoding: UTF-8
License: GPL-3
Imports: rugarch, tseries, tensorflow, keras, reticulate
NeedsCompilation: no
Packaged: 2024-02-27 17:36:09 UTC; Debopam
Repository: CRAN
Date/Publication: 2024-02-28 18:30:11 UTC

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New package alarmdata with initial version 0.2.1
Package: alarmdata
Title: Download, Merge, and Process Redistricting Data
Version: 0.2.1
Description: Utility functions to download and process data produced by the ALARM Project, including 2020 redistricting files Kenny and McCartan (2021) <https://alarm-redist.org/posts/2021-08-10-census-2020/> and the 50-State Redistricting Simulations of McCartan, Kenny, Simko, Garcia, Wang, Wu, Kuriwaki, and Imai (2022) <doi:10.7910/DVN/SLCD3E>. The package extends the data introduced in McCartan, Kenny, Simko, Garcia, Wang, Wu, Kuriwaki, and Imai (2022) <doi:10.1038/s41597-022-01808-2> to also include states with only a single district.
Depends: R (>= 3.10)
Imports: rlang, cli, curl, dplyr, readr, stringr, sf, dataverse, censable, geomander (>= 2.1.0), tidyselect, redist (>= 4.2.0), redistmetrics, tinytiger, rappdirs
Suggests: rstudioapi, rmapshaper, testthat (>= 3.0.0), spelling
License: MIT + file LICENSE
URL: https://github.com/alarm-redist/alarmdata/, https://alarm-redist.org/alarmdata/
BugReports: https://github.com/alarm-redist/alarmdata/issues/
Encoding: UTF-8
Language: en-US
NeedsCompilation: no
Packaged: 2024-02-27 19:23:24 UTC; cmccartan
Author: Cory McCartan [aut, cre] , Christopher T. Kenny [aut] , Tyler Simko [aut] , Michael Zhao [aut] , Kosuke Imai [aut]
Maintainer: Cory McCartan <corymccartan@nyu.edu>
Repository: CRAN
Date/Publication: 2024-02-28 18:30:08 UTC

More information about alarmdata at CRAN
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Package pedprobr updated to version 0.9.2 with previous version 0.8.0 dated 2023-04-13

Title: Probability Computations on Pedigrees
Description: An implementation of the Elston-Stewart algorithm for calculating pedigree likelihoods given genetic marker data (Elston and Stewart (1971) <doi:10.1159/000152448>). The standard algorithm is extended to allow inbred founders. 'pedprobr' is part of the 'ped suite', a collection of packages for pedigree analysis in R. In particular, 'pedprobr' depends on 'pedtools' for pedigree manipulations and 'pedmut' for mutation modelling. For more information, see 'Pedigree Analysis in R' (Vigeland, 2021, ISBN:9780128244302).
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>

Diff between pedprobr versions 0.8.0 dated 2023-04-13 and 0.9.2 dated 2024-02-28

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Package linelist updated to version 1.1.0 with previous version 1.0.0 dated 2023-10-19

Title: Tagging and Validating Epidemiological Data
Description: Provides tools to help storing and handling case line list data. The 'linelist' class adds a tagging system to classical 'data.frame' objects to identify key epidemiological data such as dates of symptom onset, epidemiological case definition, age, gender or disease outcome. Once tagged, these variables can be seamlessly used in downstream analyses, making data pipelines more robust and reliable.
Author: Hugo Gruson [aut, cre] , Thibaut Jombart [aut, ccp], Tim Taylor [ctb], Chris Hartgerink [rev]
Maintainer: Hugo Gruson <hugo@data.org>

Diff between linelist versions 1.0.0 dated 2023-10-19 and 1.1.0 dated 2024-02-28

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Package care4cmodel updated to version 1.0.1 with previous version 1.0.0 dated 2023-11-16

Title: Carbon-Related Assessment of Silvicultural Concepts
Description: A simulation model and accompanying functions that support assessing silvicultural concepts on the forest estate level with a focus on the CO2 uptake by wood growth and CO2 emissions by forest operations. For achieving this, a virtual forest estate area is split into the areas covered by typical phases of the silvicultural concept of interest. Given initial area shares of these phases, the dynamics of these areas is simulated. The typical carbon stocks and flows which are known for all phases are attributed post-hoc to the areas and upscaled to the estate level. CO2 emissions by forest operations are estimated based on the amounts and dimensions of the harvested timber. Probabilities of damage events are taken into account.
Author: Peter Biber [aut, cre, cph] , Stefano Grigolato [ctb] , Julia Schmucker [ctb] , Enno Uhl [ctb] , Hans Pretzsch [ctb]
Maintainer: Peter Biber <p.biber@tum.de>

Diff between care4cmodel versions 1.0.0 dated 2023-11-16 and 1.0.1 dated 2024-02-28

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Package hicp updated to version 0.4.2 with previous version 0.4.1 dated 2024-02-04

Title: Harmonised Index of Consumer Prices
Description: The Harmonised Index of Consumer Prices (HICP) is the key economic figure to measure inflation in the euro area. The methodology underlying the HICP is documented in the HICP Methodological Manual (<https://ec.europa.eu/eurostat/web/products-manuals-and-guidelines/w/ks-gq-24-003>). Based on the manual, this package provides functions to access and work with HICP data from Eurostat's public database (<https://ec.europa.eu/eurostat/data/database>).
Author: Sebastian Weinand [aut, cre]
Maintainer: Sebastian Weinand <sebastian.weinand@ec.europa.eu>

Diff between hicp versions 0.4.1 dated 2024-02-04 and 0.4.2 dated 2024-02-28

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Package iccCounts updated to version 1.1.2 with previous version 1.1.1 dated 2022-06-09

Title: Intraclass Correlation Coefficient for Count Data
Description: Estimates the intraclass correlation coefficient (ICC) for count data to assess repeatability (intra-methods concordance) and concordance (between-method concordance). In the concordance setting, the ICC is equivalent to the concordance correlation coefficient estimated by variance components. The ICC is estimated using the estimates from generalized linear mixed models. The within-subjects distributions considered are: Poisson; Negative Binomial with additive and proportional extradispersion; Zero-Inflated Poisson; and Zero-Inflated Negative Binomial with additive and proportional extradispersion. The statistical methodology used to estimate the ICC with count data can be found in Carrasco (2010) <doi:10.1111/j.1541-0420.2009.01335.x>.
Author: Josep L. Carrasco <jlcarrasco@ub.edu>
Maintainer: Josep L. Carrasco <jlcarrasco@ub.edu>

Diff between iccCounts versions 1.1.1 dated 2022-06-09 and 1.1.2 dated 2024-02-28

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Package GenoTriplo updated to version 1.0.4 with previous version 1.0.3 dated 2023-10-03

Title: Genotyping Triploids (or Diploids) from Luminescence Data
Description: Genotyping of triploid individuals from luminescence data (marker probeset A and B). Works also for diploids. Two main functions: Run_Clustering() that regroups individuals with a same genotype based on proximity and Run_Genotyping() that assigns a genotype to each cluster. For Shiny interface use: launch_GenoShiny().
Author: Julien Roche [aut, cre], Florence Phocas [aut], Mathieu Besson [aut], Pierre Patrice [aut], Marc Vandeputte [aut], Francois Allal [aut], Pierrick Haffray [aut]
Maintainer: Julien Roche <jjm.roche@gmail.com>

Diff between GenoTriplo versions 1.0.3 dated 2023-10-03 and 1.0.4 dated 2024-02-28

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Package wrMisc updated to version 1.14.2 with previous version 1.14.1 dated 2024-02-13

Title: Analyze Experimental High-Throughput (Omics) Data
Description: The efficient treatment and convenient analysis of experimental high-throughput (omics) data gets facilitated through this collection of diverse functions. Several functions address advanced object-conversions, like manipulating lists of lists or lists of arrays, reorganizing lists to arrays or into separate vectors, merging of multiple entries, etc. Another set of functions provides speed-optimized calculation of standard deviation (sd), coefficient of variance (CV) or standard error of the mean (SEM) for data in matrixes or means per line with respect to additional grouping (eg n groups of replicates). Other functions facilitate dealing with non-redundant information, by indexing unique, adding counters to redundant or eliminating lines with respect redundancy in a given reference-column, etc. Help is provided to identify very closely matching numeric values to generate (partial) distance matrixes for very big data in a memory efficient manner or to reduce the complexity of large dat [...truncated...]
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@gmail.com>

Diff between wrMisc versions 1.14.1 dated 2024-02-13 and 1.14.2 dated 2024-02-28

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New package vaxpmx with initial version 0.0.3
Package: vaxpmx
Title: Vaccines Pharmacometrics
Version: 0.0.3
Depends: R (>= 4.0)
Date: 2024-02-20
Maintainer: Julie Dudasova (MSD) <julie.dudasova@merck.com>
Description: Estimate vaccine efficacy (VE) using immunogenicity data. The inclusion of immunogenicity data in regression models can increase precision in VE. The methods are described in the publication "Elucidating vaccine efficacy using a correlate of protection, demographics, and logistic regression" by Julie Dudasova, Zdenek Valenta, and Jeffrey R. Sachs (2024).
License: GPL-3
Copyright: Copyright © 2024 Merck & Co., Inc., Rahway, NJ, USA and its affiliates. All rights reserved.
Encoding: UTF-8
LazyData: true
Imports: methods (>= 3.5.2), stats, MASS (>= 7.3-51.6), dplyr (>= 1.0.0),
Suggests: knitr, rmarkdown, testthat
NeedsCompilation: no
Packaged: 2024-02-27 09:11:11 UTC; vavrycuk
Author: Julie Dudasova [aut, cre]
Repository: CRAN
Date/Publication: 2024-02-28 11:50:02 UTC

More information about vaxpmx at CRAN
Permanent link

New package tsnet with initial version 0.1.0
Package: tsnet
Title: Fitting, Comparing, and Visualizing Networks Based on Time Series Data
Version: 0.1.0
Maintainer: Bjoern S. Siepe <bjoernsiepe@gmail.com>
Description: Fit, compare, and visualize Bayesian graphical vector autoregressive (GVAR) network models using 'Stan'. These models are commonly used in psychology to represent temporal and contemporaneous relationships between multiple variables in intensive longitudinal data. Fitted models can be compared with a test based on matrix norm differences of posterior point estimates to quantify the differences between two estimated networks. See also Siepe, Kloft & Heck (2024) <doi:10.31234/osf.io/uwfjc>.
License: GPL-3
Encoding: UTF-8
LazyData: true
URL: https://github.com/bsiepe/tsnet
BugReports: https://github.com/bsiepe/tsnet/issues
Imports: cowplot, dplyr, ggdist, ggokabeito, ggplot2, methods, posterior, Rcpp (>= 0.12.0), RcppParallel (>= 5.0.1), rlang, rstan (>= 2.18.1), rstantools (>= 2.3.1.1), stats, tidyr, utils
Suggests: testthat (>= 3.0.0)
Depends: R (>= 3.4.0)
Biarch: true
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0), RcppParallel (>= 5.0.1), rstan (>= 2.18.1), StanHeaders (>= 2.18.0)
SystemRequirements: GNU make
NeedsCompilation: yes
Packaged: 2024-02-27 07:01:04 UTC; Bjoern
Author: Bjoern S. Siepe [aut, cre, cph] , Matthias Kloft [aut] , Daniel W. Heck [ctb]
Repository: CRAN
Date/Publication: 2024-02-28 11:30:02 UTC

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Package spatstat.geom updated to version 3.2-9 with previous version 3.2-8 dated 2024-01-26

Title: Geometrical Functionality of the 'spatstat' Family
Description: Defines spatial data types and supports geometrical operations on them. Data types include point patterns, windows (domains), pixel images, line segment patterns, tessellations and hyperframes. Capabilities include creation and manipulation of data (using command line or graphical interaction), plotting, geometrical operations (rotation, shift, rescale, affine transformation), convex hull, discretisation and pixellation, Dirichlet tessellation, Delaunay triangulation, pairwise distances, nearest-neighbour distances, distance transform, morphological operations (erosion, dilation, closing, opening), quadrat counting, geometrical measurement, geometrical covariance, colour maps, calculus on spatial domains, Gaussian blur, level sets of images, transects of images, intersections between objects, minimum distance matching. (Excludes spatial data on a network, which are supported by the package 'spatstat.linnet'.)
Author: Adrian Baddeley [aut, cre, cph] , Rolf Turner [aut, cph] , Ege Rubak [aut, cph] , Tilman Davies [ctb], Ute Hahn [ctb], Abdollah Jalilian [ctb], Greg McSwiggan [ctb, cph], Sebastian Meyer [ctb, cph], Jens Oehlschlaegel [ctb, cph], Suman Rakshit [ctb], [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>

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Package grates updated to version 1.1.1 with previous version 1.1.0 dated 2023-06-08

Title: Grouped Date Classes
Description: Provides a coherent interface and implementation for creating grouped date classes. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.
Author: Tim Taylor [aut, cre]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>

Diff between grates versions 1.1.0 dated 2023-06-08 and 1.1.1 dated 2024-02-28

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Package gasper updated to version 1.1.6 with previous version 1.1.5 dated 2023-10-26

Title: Graph Signal Processing
Description: Provides the standard operations for signal processing on graphs: graph Fourier transform, spectral graph wavelet transform, visualization tools. It also implements a data driven method for graph signal denoising/regression, for details see De Loynes, Navarro, Olivier (2019) <arxiv:1906.01882>. The package also provides an interface to the SuiteSparse Matrix Collection, <https://sparse.tamu.edu/>, a large and widely used set of sparse matrix benchmarks collected from a wide range of applications.
Author: Basile de Loynes [aut] , Fabien Navarro [aut, cre] , Baptiste Olivier [aut]
Maintainer: Fabien Navarro <fabien.navarro@math.cnrs.fr>

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Package CFtime updated to version 1.3.0 with previous version 1.2.0 dated 2023-11-02

Title: Using CF-Compliant Calendars with Climate Projection Data
Description: Support for all calendars as specified in the Climate and Forecast (CF) Metadata Conventions for climate and forecasting data. The CF Metadata Conventions is widely used for distributing files with climate observations or projections, including the Coupled Model Intercomparison Project (CMIP) data used by climate change scientists and the Intergovernmental Panel on Climate Change (IPCC). This package specifically allows the user to work with any of the CF-compliant calendars (many of which are not compliant with POSIXt). The CF time coordinate is formally defined in the CF Metadata Conventions document available at <https://cfconventions.org/Data/cf-conventions/cf-conventions-1.10/cf-conventions.html#time-coordinate>.
Author: Patrick Van Laake [aut, cre, cph]
Maintainer: Patrick Van Laake <patrick@vanlaake.net>

Diff between CFtime versions 1.2.0 dated 2023-11-02 and 1.3.0 dated 2024-02-28

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Package raybevel updated to version 0.1.2 with previous version 0.1.1 dated 2024-02-26

Title: Generates Polygon Straight Skeletons and 3D Bevels
Description: Generates polygon straight skeletons and 3D models. Provides functions to create and visualize interior polygon offsets, 3D beveled polygons, and 3D roof models.
Author: Tyler Morgan-Wall [aut, cph, cre]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>

Diff between raybevel versions 0.1.1 dated 2024-02-26 and 0.1.2 dated 2024-02-28

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New package MR.RGM with initial version 0.0.1
Package: MR.RGM
Title: Multivariate Bidirectional Mendelian Randomization Networks
Version: 0.0.1
Description: Addressing a central challenge encountered in Mendelian randomization (MR) studies, where MR primarily focuses on discerning the effects of individual exposures on specific outcomes and establishes causal links between them. Using a network-based methodology, the intricacy involving interdependent outcomes due to numerous factors has been tackled through this routine. Based on Ni et al. (2018) <doi:10.1214/17-BA1087>, 'MR.RGM' extends to a broader exploration of the causal landscape by leveraging on network structures and involves the construction of causal graphs that capture interactions between response variables and consequently between responses and instrument variables. 'MR.RGM' facilitates the navigation of various data availability scenarios effectively by accommodating three input formats, i.e., individual-level data and two types of summary-level data. In the process, causal effects, adjacency matrices, and other essential parameters of the complex biological networks, [...truncated...]
License: GPL (>= 3)
Encoding: UTF-8
URL: https://github.com/bitansa/MR.RGM
BugReports: https://github.com/bitansa/MR.RGM/issues
Imports: Rcpp, stats
Suggests: MASS, igraph
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2024-02-26 23:43:41 UTC; BIKASH SARKAR
Author: Bitan Sarkar [aut, cre], Yang Ni [aut]
Maintainer: Bitan Sarkar <bitan@tamu.edu>
Repository: CRAN
Date/Publication: 2024-02-28 10:50:02 UTC

More information about MR.RGM at CRAN
Permanent link

Package explore updated to version 1.2.0 with previous version 1.1.1 dated 2024-02-10

Title: Simplifies Exploratory Data Analysis
Description: Interactive data exploration with one line of code, automated reporting or use an easy to remember set of tidy functions for low code exploratory data analysis.
Author: Roland Krasser [aut, cre]
Maintainer: Roland Krasser <roland.krasser@gmail.com>

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Package retrosheet updated to version 1.1.6 with previous version 1.1.5 dated 2023-07-07

Title: Import Professional Baseball Data from 'Retrosheet'
Description: A collection of tools to import and structure the (currently) single-season event, game-log, roster, and schedule data available from <https://www.retrosheet.org>. In particular, the event (a.k.a. play-by-play) files can be especially difficult to parse. This package does the parsing on those files, returning the requested data in the most practical R structure to use for sabermetric or other analyses.
Author: Colin Douglas [aut, cre, cph], Richard Scriven [aut, cph]
Maintainer: Colin Douglas <colin@douglas.science>

Diff between retrosheet versions 1.1.5 dated 2023-07-07 and 1.1.6 dated 2024-02-28

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Package hysteresis updated to version 2.7.2 with previous version 2.7 dated 2021-05-14

Title: Tools for Modeling Rate-Dependent Hysteretic Processes and Ellipses
Description: Fit, summarize and plot sinusoidal hysteretic processes using: two-step simple harmonic least squares, ellipse-specific non-linear least squares, the direct method, geometric least squares or linear least squares. See Yang, F and A. Parkhurst, "Efficient Estimation of Elliptical Hysteresis with Application to the Characterization of Heat Stress" <DOI:10.1007/s13253-015-0213-6>.
Author: Spencer Maynes, Fan Yang, and Anne Parkhurst
Maintainer: Spencer Maynes <smaynes89@gmail.com>

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Package gpboost updated to version 1.3.0 with previous version 1.2.9 dated 2024-02-19

Title: Combining Tree-Boosting with Gaussian Process and Mixed Effects Models
Description: An R package that allows for combining tree-boosting with Gaussian process and mixed effects models. It also allows for independently doing tree-boosting as well as inference and prediction for Gaussian process and mixed effects models. See <https://github.com/fabsig/GPBoost> for more information on the software and Sigrist (2022, JMLR) <https://www.jmlr.org/papers/v23/20-322.html> and Sigrist (2023, TPAMI) <doi:10.1109/TPAMI.2022.3168152> for more information on the methodology.
Author: Fabio Sigrist [aut, cre], Tim Gyger [aut], Pascal Kuendig [aut], Benoit Jacob [cph], Gael Guennebaud [cph], Nicolas Carre [cph], Pierre Zoppitelli [cph], Gauthier Brun [cph], Jean Ceccato [cph], Jitse Niesen [cph], Other authors of Eigen for the incl [...truncated...]
Maintainer: Fabio Sigrist <fabiosigrist@gmail.com>

Diff between gpboost versions 1.2.9 dated 2024-02-19 and 1.3.0 dated 2024-02-28

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Package gnn updated to version 0.0-4 with previous version 0.0-3 dated 2021-09-20

Title: Generative Neural Networks
Description: Tools to set up, train, store, load, investigate and analyze generative neural networks. In particular, functionality for generative moment matching networks is provided.
Author: Marius Hofert [aut, cre] , Avinash Prasad [aut]
Maintainer: Marius Hofert <mhofert@hku.hk>

Diff between gnn versions 0.0-3 dated 2021-09-20 and 0.0-4 dated 2024-02-28

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Package REDCapCAST updated to version 24.2.1 with previous version 24.1.1 dated 2024-01-09

Title: REDCap Castellated Data Handling
Description: Originally forked from the R part of 'REDCapRITS' by Paul Egeler. See <https://github.com/pegeler/REDCapRITS>. 'REDCap' database casting and handling of castellated data when using repeated instruments and longitudinal projects. Keeps a focused data export approach, by allowing to only export required data from the database. 'REDCap' (Research Electronic Data Capture) is a secure, web-based software platform designed to support data capture for research studies, providing 1) an intuitive interface for validated data capture; 2) audit trails for tracking data manipulation and export procedures; 3) automated export procedures for seamless data downloads to common statistical packages; and 4) procedures for data integration and interoperability with external sources (Harris et al (2009) <doi:10.1016/j.jbi.2008.08.010>; Harris et al (2019) <doi:10.1016/j.jbi.2019.103208>).
Author: Andreas Gammelgaard Damsbo [aut, cre] , Paul Egeler [aut]
Maintainer: Andreas Gammelgaard Damsbo <agdamsbo@clin.au.dk>

Diff between REDCapCAST versions 24.1.1 dated 2024-01-09 and 24.2.1 dated 2024-02-28

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Package neotoma2 updated to version 1.0.3 with previous version 1.0.2 dated 2023-06-29

Title: Working with the Neotoma Paleoecology Database
Description: Access and manipulation of data using the Neotoma Paleoecology Database. <https://api.neotomadb.org/api-docs/>.
Author: Dominguez Vidana Socorro [aut, cre] , Simon Goring [aut]
Maintainer: Dominguez Vidana Socorro <s.dominguez@ht-data.com>

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Package JSmediation updated to version 0.2.2 with previous version 0.2.1 dated 2023-02-05

Title: Mediation Analysis Using Joint Significance
Description: A set of helper functions to conduct joint-significance tests for mediation analysis, as recommended by Yzerbyt, Muller, Batailler, & Judd. (2018) <doi:10.1037/pspa0000132>.
Author: Cedric Batailler [aut, cre] , Dominique Muller [aut] , Vincent Yzerbyt [aut], Charles Judd [aut], Yoann Julliard [ctb] , Arnold Ho [dtc], Nour Kteily [dtc], Jacqueline Chen [dtc], Simone Dohle [dtc], Michael Siegrist [dtc]
Maintainer: Cedric Batailler <cedric.batailler@gmail.com>

Diff between JSmediation versions 0.2.1 dated 2023-02-05 and 0.2.2 dated 2024-02-28

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 R/check_assumptions.R                                                          |    9 
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Package AccelStab (with last version 2.0.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2024-02-13 2.0.0
2023-12-10 1.0.0

Permanent link
Package duckdbfs updated to version 0.0.4 with previous version 0.0.3 dated 2023-10-19

Title: High Performance Remote File System, Database and 'Geospatial' Access Using 'duckdb'
Description: Provides friendly wrappers for creating 'duckdb'-backed connections to tabular datasets ('csv', parquet, etc) on local or remote file systems. This mimics the behaviour of "open_dataset" in the 'arrow' package, but in addition to 'S3' file system also generalizes to any list of 'http' URLs.
Author: Carl Boettiger [aut, cre]
Maintainer: Carl Boettiger <cboettig@gmail.com>

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