Title: Analyze, Process, Identify, and Share Raman and (FT)IR Spectra
Description: Raman and (FT)IR spectral analysis tool for plastic particles and
other environmental samples (Cowger et al. 2021,
<doi:10.1021/acs.analchem.1c00123>). With read_any(), Open Specy provides a
single function for reading individual, batch, or map spectral data files
like .asp, .csv, .jdx, .spc, .spa, .0, and .zip. process_spec() simplifies
processing spectra, including smoothing, baseline correction,
range restriction and flattening, intensity conversions, wavenumber
alignment, and min-max normalization. Spectra can be identified in batch
using an onboard reference library (Cowger et al. 2020,
<doi:10.1177/0003702820929064>) using match_spec(). A Shiny app is available
via run_app() or online at <https://openanalysis.org/openspecy/>.
Author: Win Cowger [cre, aut, dtc] ,
Zacharias Steinmetz [aut] ,
Nick Leong [aut] ,
Andrea Faltynkova [aut, dtc] ,
Hannah Sherrod [aut] ,
Andrew B Gray [ctb] ,
Hannah Hapich [ctb] ,
Jennifer Lynch [ctb, dtc] ,
Hannah De Frond [ctb, dtc] ,
Keenan Munno [ctb, [...truncated...]
Maintainer: Win Cowger <wincowger@gmail.com>
Diff between OpenSpecy versions 1.0.6 dated 2023-11-25 and 1.0.7 dated 2024-03-11
DESCRIPTION | 13 +- MD5 | 79 ++++++++------ NAMESPACE | 21 +++ NEWS.md | 7 + R/adj_intens.R | 4 R/as_OpenSpecy.R | 32 +++--- R/conform_spec.R | 39 ++++++- R/def_features.R | 38 ++++--- R/io_spec.R | 29 ++++- R/manage_na.R |only R/manage_spec.R | 11 +- R/match_spec.R | 191 +++++++++++++++++++++++++++++++++--- R/read_envi.R | 22 +++- R/read_ext.R | 20 +++ R/read_multi.R | 16 ++- R/sig_noise.R | 71 +++++++++---- R/smooth_intens.R | 143 ++++++++++++++++++++++++-- R/split_spec.R |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/sop.R | 42 +++---- inst/doc/sop.html | 102 +++++++++---------- inst/extdata/raman_hdpe_os.csv |only man/as_OpenSpecy.Rd | 10 + man/conform_spec.Rd | 10 + man/def_features.Rd | 6 - man/io_spec.Rd | 4 man/manage_na.Rd |only man/match_spec.Rd | 38 +++++++ man/read_envi.Rd | 11 ++ man/read_multi.Rd | 6 - man/sig_noise.Rd | 44 ++++++-- man/smooth_intens.Rd | 42 ++++++- man/split_spec.Rd |only tests/testthat/test-adj_intens.R | 2 tests/testthat/test-conform_spec.R | 14 ++ tests/testthat/test-def_features.R | 12 +- tests/testthat/test-io_spec.R | 44 ++++++-- tests/testthat/test-manage_na.R |only tests/testthat/test-match_spec.R | 40 +++++++ tests/testthat/test-sig_noise.R | 25 ++++ tests/testthat/test-smooth_intens.R | 23 ++++ tests/testthat/test-split_spec.R |only tests/testthat/test-workflows.R | 78 +++++++------- 44 files changed, 1002 insertions(+), 287 deletions(-)
Title: Statistical Tests and Utilities for Genetic Association
Description: A collection of statistical tests for genetic association studies and summary data based Mendelian randomization.
Author: Dr. Kai Wang
Maintainer: Kai Wang <kai-wang@uiowa.edu>
Diff between iGasso versions 1.6 dated 2023-08-08 and 1.6.1 dated 2024-03-11
DESCRIPTION | 10 +++++----- MD5 | 8 +++++--- NAMESPACE | 1 + R/MR_het_test.R |only man/MR_het_test.Rd |only man/iGasso-package.Rd | 4 ++-- 6 files changed, 13 insertions(+), 10 deletions(-)
Title: Model Agnostic Explainers for Individual Predictions
Description: Model agnostic tool for decomposition of predictions from black boxes.
Break Down Table shows contributions of every variable to a final prediction.
Break Down Plot presents variable contributions in a concise graphical way.
This package work for binary classifiers and general regression models.
Author: Przemyslaw Biecek [aut, cre],
Aleksandra Grudziaz [ctb]
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Diff between breakDown versions 0.2.1 dated 2021-01-20 and 0.2.2 dated 2024-03-11
DESCRIPTION | 9 MD5 | 40 ++- build/vignette.rds |binary inst/doc/break_caret.R |only inst/doc/break_caret.Rmd |only inst/doc/break_caret.html |only inst/doc/break_glm.R | 4 inst/doc/break_glm.html | 332 ++++++++++++----------------- inst/doc/break_lm.R | 6 inst/doc/break_lm.html | 445 +++++++++++++++++---------------------- inst/doc/break_randomForest.R |only inst/doc/break_randomForest.Rmd |only inst/doc/break_randomForest.html |only inst/doc/break_ranger.R |only inst/doc/break_ranger.Rmd |only inst/doc/break_ranger.html |only inst/doc/break_svm.R | 2 inst/doc/break_svm.html | 403 +++++++++++++++-------------------- inst/doc/break_xgboost.R | 42 +-- inst/doc/break_xgboost.Rmd | 38 +-- inst/doc/break_xgboost.html | 329 +++++++++++----------------- tests/testthat/test_break.R | 10 tests/testthat/test_plot.R | 6 vignettes/break_caret.Rmd |only vignettes/break_randomForest.Rmd |only vignettes/break_ranger.Rmd |only vignettes/break_xgboost.Rmd | 38 +-- 27 files changed, 725 insertions(+), 979 deletions(-)
Title: Maximum Homogeneity Clustering for Univariate Data
Description: Maximum homogeneity clustering algorithm for one-dimensional data
described in W. D. Fisher (1958) <doi:10.1080/01621459.1958.10501479>
via dynamic programming.
Author: Nan Xiao [aut, cre]
Maintainer: Nan Xiao <me@nanx.me>
Diff between oneclust versions 0.2.3 dated 2023-03-06 and 0.3.0 dated 2024-03-11
oneclust-0.2.3/oneclust/R/utils-pipe.R |only oneclust-0.2.3/oneclust/man/pipe.Rd |only oneclust-0.3.0/oneclust/DESCRIPTION | 10 - oneclust-0.3.0/oneclust/MD5 | 24 +--- oneclust-0.3.0/oneclust/NAMESPACE | 2 oneclust-0.3.0/oneclust/NEWS.md | 10 + oneclust-0.3.0/oneclust/build/vignette.rds |binary oneclust-0.3.0/oneclust/inst/doc/oneclust.R | 15 +- oneclust-0.3.0/oneclust/inst/doc/oneclust.Rmd | 17 +- oneclust-0.3.0/oneclust/inst/doc/oneclust.html | 57 +++++----- oneclust-0.3.0/oneclust/man/figures/README-coefficients-1.png |binary oneclust-0.3.0/oneclust/man/figures/README-high-cardinality-1.png |binary oneclust-0.3.0/oneclust/man/figures/README-peak-calling-1.png |binary oneclust-0.3.0/oneclust/vignettes/oneclust.Rmd | 17 +- 14 files changed, 78 insertions(+), 74 deletions(-)
Title: Simple and Configurable Tables in 'HTML', 'LaTeX', 'Markdown',
'Word', 'PNG', 'PDF', and 'Typst' Formats
Description: Create highly customized tables with this simple and dependency-free package. Data frames can be converted to 'HTML', 'LaTeX', 'Markdown', 'Word', 'PNG', 'PDF', or 'Typst' tables. The user interface is minimalist and easy to learn. The syntax concise. 'HTML' tables can be customized using the flexible 'Bootstrap' framework, and 'LaTeX' code with the 'tabularray' package.
Author: Vincent Arel-Bundock [aut, cre]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between tinytable versions 0.0.5 dated 2024-02-12 and 0.1.0 dated 2024-03-11
tinytable-0.0.5/tinytable/R/tt_markdown.R |only tinytable-0.0.5/tinytable/inst/templates/tabularray_bootstrap.tex |only tinytable-0.0.5/tinytable/inst/templates/tabularray_default.tex |only tinytable-0.0.5/tinytable/inst/templates/tabularray_grid.tex |only tinytable-0.0.5/tinytable/inst/templates/tabularray_void.tex |only tinytable-0.0.5/tinytable/inst/tinytest/_tinysnapshot/group_tt-html_tutorial_01.rds |only tinytable-0.0.5/tinytable/inst/tinytest/_tinysnapshot/html-heatmap.rds |only tinytable-0.0.5/tinytable/inst/tinytest/_tinysnapshot/html-issue58.rds |only tinytable-0.0.5/tinytable/inst/tinytest/_tinysnapshot/html-issue88.rds |only tinytable-0.0.5/tinytable/inst/tinytest/_tinysnapshot/html-issue92.rds |only tinytable-0.0.5/tinytable/inst/tinytest/_tinysnapshot/html-striped.rds |only tinytable-0.0.5/tinytable/inst/tinytest/_tinysnapshot/html-striped_orange.rds |only tinytable-0.0.5/tinytable/inst/tinytest/_tinysnapshot/html-vectorized_color_j.rds |only tinytable-0.0.5/tinytable/inst/tinytest/test_empty.R |only tinytable-0.1.0/tinytable/DESCRIPTION | 14 tinytable-0.1.0/tinytable/MD5 | 274 ++++++--- tinytable-0.1.0/tinytable/NAMESPACE | 2 tinytable-0.1.0/tinytable/NEWS.md | 48 + tinytable-0.1.0/tinytable/R/build_tt.R | 129 ++-- tinytable-0.1.0/tinytable/R/class.R |only tinytable-0.1.0/tinytable/R/escape.R | 5 tinytable-0.1.0/tinytable/R/finalize_bootstrap.R | 25 tinytable-0.1.0/tinytable/R/finalize_grid.R | 52 + tinytable-0.1.0/tinytable/R/finalize_tabularray.R |only tinytable-0.1.0/tinytable/R/finalize_typst.R | 28 tinytable-0.1.0/tinytable/R/footnotes.R | 30 tinytable-0.1.0/tinytable/R/format_tt.R | 303 +++++++--- tinytable-0.1.0/tinytable/R/group_bootstrap.R | 56 - tinytable-0.1.0/tinytable/R/group_grid.R | 100 +-- tinytable-0.1.0/tinytable/R/group_tabularray.R | 59 - tinytable-0.1.0/tinytable/R/group_tt.R | 39 - tinytable-0.1.0/tinytable/R/group_typst.R | 52 + tinytable-0.1.0/tinytable/R/plot_tt.R | 36 - tinytable-0.1.0/tinytable/R/print.R | 54 - tinytable-0.1.0/tinytable/R/sanity.R | 26 tinytable-0.1.0/tinytable/R/save_tt.R | 35 - tinytable-0.1.0/tinytable/R/style_bootstrap.R | 72 +- tinytable-0.1.0/tinytable/R/style_grid.R | 121 +-- tinytable-0.1.0/tinytable/R/style_tabularray.R | 110 ++- tinytable-0.1.0/tinytable/R/style_tt.R | 134 ++-- tinytable-0.1.0/tinytable/R/style_typst.R | 23 tinytable-0.1.0/tinytable/R/template.R | 5 tinytable-0.1.0/tinytable/R/theme_tt.R |only tinytable-0.1.0/tinytable/R/tt.R | 95 +-- tinytable-0.1.0/tinytable/R/tt_bootstrap.R | 70 +- tinytable-0.1.0/tinytable/R/tt_grid.R | 82 +- tinytable-0.1.0/tinytable/R/tt_tabularray.R | 64 -- tinytable-0.1.0/tinytable/R/tt_typst.R | 32 - tinytable-0.1.0/tinytable/R/utils.R | 74 +- tinytable-0.1.0/tinytable/README.md | 139 +--- tinytable-0.1.0/tinytable/build/partial.rdb |binary tinytable-0.1.0/tinytable/inst/templates/tabularray.tex |only tinytable-0.1.0/tinytable/inst/templates/typst.typ | 3 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/colrowspan-markdown_multiple.txt | 3 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/docx-issue98_01.txt | 7 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/docx-issue98_02.txt | 25 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/docx-issue98_03.txt | 25 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/docx-issue98_04.txt | 3 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/escape-issue150_caption_escape.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/escape-issue150_caption_escape_02.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/escape-issue150_caption_escape_03.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/format_tt-dataframe.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/format_tt-fn.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/format_tt-issue142_01.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/format_tt-issue142_02.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/format_tt-issue147_01.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/format_tt-issue147_02.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/format_tt-issue147_03.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/format_tt-issue149.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/format_tt-num_suffix_vignette.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/format_tt-vignette_digits.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/format_tt-vignette_html_markdown.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/format_tt-vignette_misc.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/group_columns.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/group_rows.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/group_tt-3level_md.txt | 7 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/group_tt-3level_tex.txt | 7 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/group_tt-3level_typ.txt | 44 + tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/group_tt-html_tutorial_01.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/group_tt-issue165_extra_row.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/group_tt-issue165_html_centering_style.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/html-alignment.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/html-bootstrap_css.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/html-borders.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/html-built_in_plots.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/html-caption.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/html-conditional_styling.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/html-font_size.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/html-footnote.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/html-formatting.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/html-heatmap.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/html-images.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/html-individual_cells.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/html-issue58.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/html-issue88.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/html-issue92.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/html-line_break.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/html-merge_cells.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/html-missing_value.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/html-omit_headers.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/html-spanning_cells.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/html-striped.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/html-striped_orange.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/html-vectorized_color_j.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/i_j-format_tt_i_01.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/i_j-sanitize_j_equivalence.txt | 25 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-align.txt | 7 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-align_d.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-borders.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-breaks.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-cell_color.txt | 7 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-col_color.txt | 7 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-conditional_styling.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-default.txt | 7 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-escape_special_caracters.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-font_size.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-footnotes.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-formatting.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-formatting_url.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-group_style_order.txt | 7 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-heatmaps.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-maths.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-merging_cells.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-missing_value_replacement.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-nohead.txt | 7 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-placement.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-row_color.txt | 7 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-spanning_cells.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-style.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-theme_grid.txt | 10 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-theme_striped.txt | 7 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/latex-theme_void.txt | 7 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/markdown-bold_columns.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/markdown-caption.txt | 7 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/markdown-footnote.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/markdown-group_i_style_tt.txt | 51 - tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/markdown-group_j_wider_1.txt | 1 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/markdown-group_j_wider_2.txt | 1 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/markdown-group_tt.txt | 19 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/markdown-issue105.txt | 31 - tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/markdown-missing_value.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/markdown-nocolnames.txt | 3 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/notes-latex_cell_markers.txt | 1 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/theme-placement_options_no_doubling.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/tibble-html_pillar_num.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/tibble-latex_pillar_num.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/tibble-markdown_pillar_num.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/tibble-markdown_tibble_issue141.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/tibble-typst_pillar_num.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/typst-complicated.txt | 17 tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/typst-font_size.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/typst-formatting.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/typst-grid.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/typst-issue-139_misaligned_rule_with_group_tt.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/typst-italic_markdown.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/typst-missing_value_replacement.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/typst-more_formatting.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/typst-no_headers.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/typst-significant_cell.txt |only tinytable-0.1.0/tinytable/inst/tinytest/_tinysnapshot/typst-striped.txt |only tinytable-0.1.0/tinytable/inst/tinytest/helpers.R | 9 tinytable-0.1.0/tinytable/inst/tinytest/test-escape.R | 29 tinytable-0.1.0/tinytable/inst/tinytest/test-format_tt.R | 125 +++- tinytable-0.1.0/tinytable/inst/tinytest/test-group_tt.R | 37 - tinytable-0.1.0/tinytable/inst/tinytest/test-html.R | 157 ++++- tinytable-0.1.0/tinytable/inst/tinytest/test-i_j.R | 8 tinytable-0.1.0/tinytable/inst/tinytest/test-latex.R | 174 +++++ tinytable-0.1.0/tinytable/inst/tinytest/test-markdown.R | 19 tinytable-0.1.0/tinytable/inst/tinytest/test-notes.R | 7 tinytable-0.1.0/tinytable/inst/tinytest/test-theme.R |only tinytable-0.1.0/tinytable/inst/tinytest/test-tibble.R |only tinytable-0.1.0/tinytable/inst/tinytest/test-typst.R | 89 ++ tinytable-0.1.0/tinytable/man/as.character-tinytable-method.Rd |only tinytable-0.1.0/tinytable/man/colnames-tinytable-method.Rd |only tinytable-0.1.0/tinytable/man/dim-tinytable-method.Rd |only tinytable-0.1.0/tinytable/man/figures/readme_01.png |only tinytable-0.1.0/tinytable/man/figures/readme_02.png |only tinytable-0.1.0/tinytable/man/finalize.Rd |only tinytable-0.1.0/tinytable/man/format_tt.Rd | 55 + tinytable-0.1.0/tinytable/man/group_eval-tinytable_bootstrap-method.Rd |only tinytable-0.1.0/tinytable/man/group_eval-tinytable_grid-method.Rd |only tinytable-0.1.0/tinytable/man/group_eval-tinytable_tabularray-method.Rd |only tinytable-0.1.0/tinytable/man/group_eval-tinytable_typst-method.Rd |only tinytable-0.1.0/tinytable/man/group_eval.Rd |only tinytable-0.1.0/tinytable/man/group_tt.Rd | 21 tinytable-0.1.0/tinytable/man/initialize-tinytable-method.Rd |only tinytable-0.1.0/tinytable/man/names-tinytable-method.Rd |only tinytable-0.1.0/tinytable/man/ncol-tinytable-method.Rd |only tinytable-0.1.0/tinytable/man/nrow-tinytable-method.Rd |only tinytable-0.1.0/tinytable/man/print.tinytable.Rd | 2 tinytable-0.1.0/tinytable/man/save_tt.Rd | 5 tinytable-0.1.0/tinytable/man/style_eval.Rd |only tinytable-0.1.0/tinytable/man/style_tt.Rd | 80 ++ tinytable-0.1.0/tinytable/man/theme_tt.Rd |only tinytable-0.1.0/tinytable/man/tinytable-class.Rd |only tinytable-0.1.0/tinytable/man/tt.Rd | 36 - tinytable-0.1.0/tinytable/man/tt_eval.Rd |only 197 files changed, 2366 insertions(+), 1228 deletions(-)
Title: Convert Rd to 'Roxygen' Documentation
Description: Functions to convert Rd to 'roxygen' documentation. It can parse an
Rd file to a list, create the 'roxygen' documentation and update the original
R script (e.g. the one containing the definition of the function)
accordingly. This package also provides utilities that can help developers
build packages using 'roxygen' more easily. The 'formatR' package can be used
to reformat the R code in the examples sections so that the code will be
more readable.
Author: Hadley Wickham [aut],
Yihui Xie [aut, cre]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between Rd2roxygen versions 1.14 dated 2022-08-09 and 1.15 dated 2024-03-11
DESCRIPTION | 8 MD5 | 16 - NEWS.md | 4 R/rd2roxygen.R | 2 build/vignette.rds |binary inst/doc/Rd2roxygen.Rmd | 17 - inst/doc/Rd2roxygen.html | 632 ++++++++-------------------------------------- man/Rd2roxygen-package.Rd | 8 vignettes/Rd2roxygen.Rmd | 17 - 9 files changed, 162 insertions(+), 542 deletions(-)
Title: An Implementation of Ordinal Pattern Analysis
Description: Quantifies hypothesis to data fit for repeated measures
and longitudinal data, as described by Thorngate (1987)
<doi:10.1016/S0166-4115(08)60083-7> and Grice et al., (2015)
<doi:10.1177/2158244015604192>. Hypothesis and data are encoded as
pairwise relative orderings which are then compared to determine the
percentage of orderings in the data that are matched by the hypothesis.
Author: Timothy Beechey [aut, cre]
Maintainer: Timothy Beechey <tim.beechey@proton.me>
Diff between opa versions 0.8.2 dated 2024-02-16 and 0.8.3 dated 2024-03-11
DESCRIPTION | 8 MD5 | 69 ++- NAMESPACE | 19 - R/RcppExports.R | 8 R/compare_pccs.R | 134 +++++++ R/condition_comparison.R | 80 ++-- R/data.R | 34 + R/fitopa.R | 215 ++++++------ R/opa-package.R | 25 + R/utility.R | 539 ++++++++++++++----------------- README.md | 238 ------------- build/vignette.rds |binary data/bees.rda |only inst/doc/opa.R | 30 + inst/doc/opa.Rmd | 56 ++- inst/doc/opa.html | 186 +++++----- inst/tinytest/test_opa.R | 4 man/bees.Rd |only man/compare_groups.Rd | 4 man/compare_hypotheses.Rd | 6 man/cval_plot.Rd | 9 man/figures/README-plot_hypothesis-1.png |binary man/figures/README-plot_opamod1-1.png |binary man/figures/README-plot_opamod2-1.png |binary man/figures/README-threshold_plots-1.png |binary man/hypothesis.Rd | 4 man/opa.Rd | 10 man/pcc_plot.Rd | 9 man/pituitary.Rd | 12 man/plot.opaGroupComparison.Rd |only man/plot.opaHypothesisComparison.Rd |only man/plot.opafit.Rd | 6 man/plot.oparandpccs.Rd |only man/print.pairwiseopafit.Rd | 1 src/RcppExports.cpp | 21 - src/cpp_functions.cpp | 134 ++++--- tests/tinytest.R | 4 vignettes/opa.Rmd | 56 ++- 38 files changed, 940 insertions(+), 981 deletions(-)
Title: Harrell Miscellaneous
Description: Contains many functions useful for data
analysis, high-level graphics, utility operations, functions for
computing sample size and power, simulation, importing and annotating datasets,
imputing missing values, advanced table making, variable clustering,
character string manipulation, conversion of R objects to LaTeX and html code,
recoding variables, caching, simplified parallel computing, encrypting and decrypting data using a safe workflow, general moving window statistical estimation, and assistance in interpreting principal component analysis.
Author: Frank E Harrell Jr [aut, cre] ,
Charles Dupont [ctb]
Maintainer: Frank E Harrell Jr <fh@fharrell.com>
Diff between Hmisc versions 5.1-1 dated 2023-09-12 and 5.1-2 dated 2024-03-11
DESCRIPTION | 13 +++++++------ MD5 | 46 +++++++++++++++++++++++----------------------- NEWS | 13 +++++++++++++ R/GiniMd.s | 5 +++-- R/Misc.s | 8 +++++--- R/cut2.s | 2 +- R/dotchartpl.s | 8 +++----- R/ebpcomp.r | 10 +++++++++- R/ecdf.s | 2 +- R/ggfreqScatter.r | 2 +- R/hist.data.frame.s | 4 ++-- R/movStats.r | 15 ++++++++------- R/runParallel.r | 4 ++-- R/testCharDateTime.r | 6 ++---- man/Misc.Rd | 4 ++-- man/dotchartpl.Rd | 2 +- man/movStats.Rd | 7 +++++-- man/rm.boot.Rd | 2 +- man/runParallel.Rd | 4 ++-- man/spikecomp.Rd | 7 +++++++ man/summaryP.Rd | 2 +- man/testCharDateTime.Rd | 2 +- man/transcan.Rd | 2 +- man/windows/sas.get.Rd | 2 +- 24 files changed, 102 insertions(+), 70 deletions(-)
Title: Quality Report Generation for MaxQuant and mzTab Results
Description: Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the
MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool).
Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015)
<doi:10.1021/acs.jproteome.5b00780>.
Author: Chris Bielow [aut, cre],
Juliane Schmachtenberg [ctb],
Swenja Wagner [ctb],
Patricia Scheil [ctb],
Tom Waschischek [ctb],
Guido Mastrobuoni [dtc, rev]
Maintainer: Chris Bielow <chris.bielow@bsc.fu-berlin.de>
Diff between PTXQC versions 1.1.0 dated 2023-12-15 and 1.1.1 dated 2024-03-11
PTXQC-1.1.0/PTXQC/man/PTXQC.Rd |only PTXQC-1.1.1/PTXQC/DESCRIPTION | 10 +- PTXQC-1.1.1/PTXQC/MD5 | 31 +++--- PTXQC-1.1.1/PTXQC/NEWS | 8 + PTXQC-1.1.1/PTXQC/R/PTXQC-package.R |only PTXQC-1.1.1/PTXQC/R/PTXQC.R | 50 ---------- PTXQC-1.1.1/PTXQC/R/fcn_plots.R | 4 PTXQC-1.1.1/PTXQC/README.md | 6 - PTXQC-1.1.1/PTXQC/build/vignette.rds |binary PTXQC-1.1.1/PTXQC/inst/doc/PTXQC-Basic_Guide_for_R_users.R | 8 - PTXQC-1.1.1/PTXQC/inst/doc/PTXQC-Basic_Guide_for_R_users.html | 4 PTXQC-1.1.1/PTXQC/inst/doc/PTXQC-CustomizeReport.html | 4 PTXQC-1.1.1/PTXQC/inst/doc/PTXQC-DragNDrop.html | 4 PTXQC-1.1.1/PTXQC/inst/doc/PTXQC-FAQ.html | 4 PTXQC-1.1.1/PTXQC/inst/doc/PTXQC-Input_And_Output_Data.R | 2 PTXQC-1.1.1/PTXQC/inst/doc/PTXQC-Input_And_Output_Data.html | 4 PTXQC-1.1.1/PTXQC/inst/doc/PTXQC-ListOfMetrics.html | 4 PTXQC-1.1.1/PTXQC/man/PTXQC-package.Rd |only 18 files changed, 49 insertions(+), 94 deletions(-)
Title: Multiblock Data Fusion in Statistics and Machine Learning
Description: Functions and datasets to support Smilde, Næs and Liland (2021, ISBN: 978-1-119-60096-1)
"Multiblock Data Fusion in Statistics and Machine Learning - Applications in the Natural and Life Sciences".
This implements and imports a large collection of methods for multiblock data analysis with common interfaces, result- and plotting
functions, several real data sets and six vignettes covering a range different applications.
Author: Kristian Hovde Liland [aut, cre]
,
Solve Saeboe [ctb],
Stefan Schrunner [rev]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between multiblock versions 0.8.8 dated 2024-01-26 and 0.8.8.1 dated 2024-03-11
DESCRIPTION | 8 +- MD5 | 12 +-- NEWS | 5 + R/sopls.R | 34 ++++++--- R/sopls_crossvalidation.R | 12 ++- inst/doc/vignette_E_supervised.html | 126 ++++++++++++++++++------------------ man/sopls.Rd | 2 7 files changed, 108 insertions(+), 91 deletions(-)
Title: Adaptation of the Coloc Method for PheWAS
Description: A Bayesian method for Phenome-wide association studies (PheWAS) that identifies causal associations between genetic variants and traits, while simultaneously addressing confounding due to linkage disequilibrium. For details see
Manipur et al (2023) <doi:10.1101/2023.06.29.546856>.
Author: Ichcha Manipur [aut, cre],
Chris Wallace [aut]
Maintainer: Ichcha Manipur <im504@cam.ac.uk>
Diff between cophescan versions 1.3.2 dated 2023-10-25 and 1.4.0 dated 2024-03-11
DESCRIPTION | 8 - MD5 | 45 +++---- NEWS.md | 22 ++- R/multivarsusie.R | 15 +- R/singlevar.R | 44 +++--- README.md | 12 + inst/doc/FixedPriors_03.R | 7 - inst/doc/FixedPriors_03.Rmd | 20 ++- inst/doc/FixedPriors_03.html | 66 +++++----- inst/doc/HierarchicalPriors_04.R | 83 ++++++++---- inst/doc/HierarchicalPriors_04.Rmd | 92 +++++++++----- inst/doc/HierarchicalPriors_04.html | 212 ++++++++++++++++++--------------- inst/doc/InputData_02.R | 2 inst/doc/InputData_02.html | 4 inst/doc/IntroductionCoPheScan_01.R | 2 inst/doc/IntroductionCoPheScan_01.html | 4 man/adjust_priors.Rd | 19 ++ man/cophe.single.Rd | 20 +-- man/cophe.susie.Rd | 20 +-- man/per.snp.priors.Rd | 20 +-- vignettes/FixedPriors_03.Rmd | 20 ++- vignettes/HP-unnamed-chunk-8-1.png |only vignettes/HP-unnamed-chunk-8-2.png |only vignettes/HP-unnamed-chunk-8-3.png |only vignettes/HierarchicalPriors_04.Rmd | 92 +++++++++----- 25 files changed, 506 insertions(+), 323 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-11 0.3.0
2020-06-03 0.2.2
2019-02-09 0.2.1
2018-07-06 0.2.0
2018-06-20 0.1.3
2018-06-14 0.1.2
2017-03-12 0.1.1
2016-12-28 0.1.0
Title: Pull Data from an 'ArcGIS REST' API
Description: Functions to efficiently query 'ArcGIS REST' APIs
<https://developers.arcgis.com/rest/>.
Both spatial and SQL queries can be used to retrieve data.
Simple Feature (sf) objects are utilized to perform spatial queries.
This package was neither produced nor is maintained by Esri.
Author: Paul Frater [aut, cre] ,
Zac Driscoll [aut]
Maintainer: Paul Frater <paul.frater@wisconsin.gov>
Diff between arcpullr versions 0.2.8 dated 2023-05-24 and 0.2.9 dated 2024-03-11
DESCRIPTION | 16 MD5 | 82 NAMESPACE | 92 R/arcpullr-package.R | 108 R/data.R | 270 - R/imports.R | 28 R/plot_layers.R | 572 +- R/process_raster.R | 398 - R/retrieve_layer_properties.R | 110 R/retrieve_layers.R | 1088 ++-- R/retrieve_layers_by_geometry.R | 248 - R/url_objects.R | 46 R/utilities.R | 1046 ++-- README.md | 96 build/vignette.rds |binary inst/doc/intro_to_arcpullr.R | 76 inst/doc/intro_to_arcpullr.Rmd | 282 - inst/doc/intro_to_arcpullr.html | 1476 ++--- inst/doc/raster_layers.R | 92 inst/doc/raster_layers.Rmd | 220 inst/doc/raster_layers.html | 1430 ++--- inst/doc/spatial_queries.R | 368 - inst/doc/spatial_queries.Rmd | 654 +- inst/doc/spatial_queries.html | 6895 +++++++++++++--------------- man/arcpullr-package.Rd | 130 man/get_image_layer.Rd | 136 man/get_layer_info.Rd | 50 man/get_layers_by_spatial.Rd | 122 man/get_map_layer.Rd | 144 man/get_raster_layer.Rd | 120 man/get_spatial_layer.Rd | 128 man/get_table_layer.Rd | 98 man/sp_rel_lookups.Rd | 100 man/sql_where.Rd | 62 tests/testthat.R | 8 tests/testthat/test_format_spatial_coords.R | 198 tests/testthat/test_layer_properties.R | 46 tests/testthat/test_process_rasters.R | 166 tests/testthat/test_utilities.R | 174 vignettes/intro_to_arcpullr.Rmd | 282 - vignettes/raster_layers.Rmd | 220 vignettes/spatial_queries.Rmd | 654 +- 42 files changed, 9169 insertions(+), 9362 deletions(-)
Title: Loading NONMEM Output Files with Functions for Visual Predictive
Checks (VPC) and Goodness of Fit (GOF) Plots
Description: Loading NONMEM (NONlinear Mixed-Effect Modeling, <https://www.iconplc.com/solutions/technologies/nonmem/>) and PSN (Perl-speaks-NONMEM, <https://uupharmacometrics.github.io/PsN/>) output files to extract parameter estimates, provide visual predictive check (VPC) and goodness of fit (GOF) plots, and simulate with parameter uncertainty.
Author: Magnus Astrand
Maintainer: Magnus Astrand <magnus.astrand@astrazeneca.com>
Diff between nonmem2R versions 0.2.4 dated 2022-04-14 and 0.2.5 dated 2024-03-11
nonmem2R-0.2.4/nonmem2R/R/qqnorm_geom.R |only nonmem2R-0.2.4/nonmem2R/man/StatQQVPC.Rd |only nonmem2R-0.2.4/nonmem2R/man/StatQQnorm.Rd |only nonmem2R-0.2.4/nonmem2R/man/StatQQrefline.Rd |only nonmem2R-0.2.4/nonmem2R/man/stat_QQVPC.Rd |only nonmem2R-0.2.4/nonmem2R/man/stat_QQnorm.Rd |only nonmem2R-0.2.4/nonmem2R/man/stat_QQrefline.Rd |only nonmem2R-0.2.4/nonmem2R/man/systemPSN.Rd |only nonmem2R-0.2.5/nonmem2R/DESCRIPTION | 10 nonmem2R-0.2.5/nonmem2R/MD5 | 90 nonmem2R-0.2.5/nonmem2R/NAMESPACE | 253 +- nonmem2R-0.2.5/nonmem2R/NEWS | 194 - nonmem2R-0.2.5/nonmem2R/R/04_GOFs.R | 2448 +++++++++++----------- nonmem2R-0.2.5/nonmem2R/R/LoadNonmemOutput.R | 2008 ++++++++---------- nonmem2R-0.2.5/nonmem2R/R/vpcfig.R | 825 +++---- nonmem2R-0.2.5/nonmem2R/build/vignette.rds |binary nonmem2R-0.2.5/nonmem2R/inst/doc/GOFvignette.R | 208 - nonmem2R-0.2.5/nonmem2R/inst/doc/GOFvignette.html | 778 +++--- nonmem2R-0.2.5/nonmem2R/inst/doc/VPCvignette.R | 96 nonmem2R-0.2.5/nonmem2R/inst/doc/VPCvignette.html | 460 ++-- nonmem2R-0.2.5/nonmem2R/man/PositionScale.Rd | 4 nonmem2R-0.2.5/nonmem2R/man/StatCorr.Rd | 4 nonmem2R-0.2.5/nonmem2R/man/StatDenx.Rd | 4 nonmem2R-0.2.5/nonmem2R/man/StatDnorm.Rd | 4 nonmem2R-0.2.5/nonmem2R/man/StatHmean.Rd | 4 nonmem2R-0.2.5/nonmem2R/man/StatHmedian.Rd | 4 nonmem2R-0.2.5/nonmem2R/man/basic.GOF4.Rd | 35 nonmem2R-0.2.5/nonmem2R/man/basic.eta.GOF.Rd | 41 nonmem2R-0.2.5/nonmem2R/man/covload.Rd | 8 nonmem2R-0.2.5/nonmem2R/man/covload.sub.table.Rd | 7 nonmem2R-0.2.5/nonmem2R/man/do.cat.GOF.Rd | 16 nonmem2R-0.2.5/nonmem2R/man/do.individual.GOF.Rd | 19 nonmem2R-0.2.5/nonmem2R/man/do.multi.GOF.Rd | 18 nonmem2R-0.2.5/nonmem2R/man/do.one.GOF.Rd | 16 nonmem2R-0.2.5/nonmem2R/man/eta.cov.GOF.Rd | 51 nonmem2R-0.2.5/nonmem2R/man/extToTable.Rd | 10 nonmem2R-0.2.5/nonmem2R/man/extload.Rd | 8 nonmem2R-0.2.5/nonmem2R/man/extload.sub.table.Rd | 9 nonmem2R-0.2.5/nonmem2R/man/grid.sim.internal1.Rd | 3 nonmem2R-0.2.5/nonmem2R/man/histGOF.Rd | 12 nonmem2R-0.2.5/nonmem2R/man/qqnormGOF.Rd | 13 nonmem2R-0.2.5/nonmem2R/man/stat_corr.Rd | 13 nonmem2R-0.2.5/nonmem2R/man/stat_denx.Rd | 13 nonmem2R-0.2.5/nonmem2R/man/stat_dnorm.Rd | 13 nonmem2R-0.2.5/nonmem2R/man/stat_hmean.Rd | 13 nonmem2R-0.2.5/nonmem2R/man/stat_hmedian.Rd | 13 nonmem2R-0.2.5/nonmem2R/man/sumoR.Rd | 9 nonmem2R-0.2.5/nonmem2R/man/vpcfig.Rd | 33 nonmem2R-0.2.5/nonmem2R/man/vpcfig2.Rd | 39 nonmem2R-0.2.5/nonmem2R/man/vpcfig3.Rd | 34 50 files changed, 4101 insertions(+), 3739 deletions(-)
Title: Wrangle and Analyze Growth Curve Data
Description: Easy wrangling and model-free analysis of
microbial growth curve data, as commonly output by plate readers.
Tools for reshaping common plate reader outputs into 'tidy' formats and
merging them with design information, making data easy to work with using
'gcplyr' and other packages. Also streamlines common growth curve
processing steps, like smoothing and calculating derivatives, and
facilitates model-free characterization and analysis of growth data.
See methods at <https://mikeblazanin.github.io/gcplyr/>.
Author: Mike Blazanin [aut, cre]
Maintainer: Mike Blazanin <mikeblazanin@gmail.com>
Diff between gcplyr versions 1.8.0 dated 2024-01-30 and 1.9.0 dated 2024-03-11
gcplyr-1.8.0/gcplyr/man/moving_average.Rd |only gcplyr-1.8.0/gcplyr/man/moving_median.Rd |only gcplyr-1.9.0/gcplyr/DESCRIPTION | 20 gcplyr-1.9.0/gcplyr/MD5 | 149 - gcplyr-1.9.0/gcplyr/NAMESPACE | 4 gcplyr-1.9.0/gcplyr/NEWS.md | 42 gcplyr-1.9.0/gcplyr/R/example_functions.R | 83 gcplyr-1.9.0/gcplyr/R/functions.R | 1048 +++++++--- gcplyr-1.9.0/gcplyr/R/utility_functions.R | 88 gcplyr-1.9.0/gcplyr/README.md | 29 gcplyr-1.9.0/gcplyr/build/vignette.rds |binary gcplyr-1.9.0/gcplyr/inst/doc/gc01_gcplyr.R | 67 gcplyr-1.9.0/gcplyr/inst/doc/gc01_gcplyr.Rmd | 73 gcplyr-1.9.0/gcplyr/inst/doc/gc01_gcplyr.pdf |binary gcplyr-1.9.0/gcplyr/inst/doc/gc02_import_reshape.Rmd | 6 gcplyr-1.9.0/gcplyr/inst/doc/gc02_import_reshape.pdf |binary gcplyr-1.9.0/gcplyr/inst/doc/gc03_incorporate_designs.R | 185 - gcplyr-1.9.0/gcplyr/inst/doc/gc03_incorporate_designs.Rmd | 339 --- gcplyr-1.9.0/gcplyr/inst/doc/gc03_incorporate_designs.pdf |binary gcplyr-1.9.0/gcplyr/inst/doc/gc04_preprocess_plot.R | 2 gcplyr-1.9.0/gcplyr/inst/doc/gc04_preprocess_plot.Rmd | 8 gcplyr-1.9.0/gcplyr/inst/doc/gc04_preprocess_plot.pdf |binary gcplyr-1.9.0/gcplyr/inst/doc/gc05_process.R | 2 gcplyr-1.9.0/gcplyr/inst/doc/gc05_process.Rmd | 6 gcplyr-1.9.0/gcplyr/inst/doc/gc05_process.pdf |binary gcplyr-1.9.0/gcplyr/inst/doc/gc06_analyze.R | 112 - gcplyr-1.9.0/gcplyr/inst/doc/gc06_analyze.Rmd | 220 +- gcplyr-1.9.0/gcplyr/inst/doc/gc06_analyze.pdf |binary gcplyr-1.9.0/gcplyr/inst/doc/gc07_noise.R | 27 gcplyr-1.9.0/gcplyr/inst/doc/gc07_noise.Rmd | 80 gcplyr-1.9.0/gcplyr/inst/doc/gc07_noise.pdf |binary gcplyr-1.9.0/gcplyr/inst/doc/gc08_conclusion.R | 56 gcplyr-1.9.0/gcplyr/inst/doc/gc08_conclusion.Rmd | 97 gcplyr-1.9.0/gcplyr/inst/doc/gc08_conclusion.pdf |binary gcplyr-1.9.0/gcplyr/inst/doc/gc09_multiple_plates.Rmd | 4 gcplyr-1.9.0/gcplyr/inst/doc/gc09_multiple_plates.pdf |binary gcplyr-1.9.0/gcplyr/inst/doc/gc10_using_make_design.R |only gcplyr-1.9.0/gcplyr/inst/doc/gc10_using_make_design.Rmd |only gcplyr-1.9.0/gcplyr/inst/doc/gc10_using_make_design.pdf |only gcplyr-1.9.0/gcplyr/man/ExtremaFunctions.Rd | 74 gcplyr-1.9.0/gcplyr/man/MovingWindowFunctions.Rd |only gcplyr-1.9.0/gcplyr/man/ThresholdFunctions.Rd | 4 gcplyr-1.9.0/gcplyr/man/auc.Rd | 23 gcplyr-1.9.0/gcplyr/man/block_tidydesign.Rd | 74 gcplyr-1.9.0/gcplyr/man/calc_deriv.Rd | 44 gcplyr-1.9.0/gcplyr/man/first_peak.Rd | 3 gcplyr-1.9.0/gcplyr/man/import_blockdesigns.Rd | 82 gcplyr-1.9.0/gcplyr/man/lag_time.Rd | 42 gcplyr-1.9.0/gcplyr/man/makemethod_train_smooth_data.Rd |only gcplyr-1.9.0/gcplyr/man/merge_dfs.Rd | 4 gcplyr-1.9.0/gcplyr/man/predict_interpolation.Rd |only gcplyr-1.9.0/gcplyr/man/smooth_data.Rd | 15 gcplyr-1.9.0/gcplyr/man/train_smooth_data.Rd |only gcplyr-1.9.0/gcplyr/tests/testthat/allfunctions_argumentsmatching_files/full_matches_ref.csv | 12 gcplyr-1.9.0/gcplyr/tests/testthat/allfunctions_argumentsmatching_files/gcplyr_function_subfunction_calls.csv | 4 gcplyr-1.9.0/gcplyr/tests/testthat/allfunctions_argumentsmatching_files/part_matches_ref.csv | 4 gcplyr-1.9.0/gcplyr/tests/testthat/test_analysisfunctions.R | 57 gcplyr-1.9.0/gcplyr/tests/testthat/test_derivativefunctions.R | 12 gcplyr-1.9.0/gcplyr/tests/testthat/test_importfunctions.R | 113 + gcplyr-1.9.0/gcplyr/tests/testthat/test_smoothingfunctions.R | 110 + gcplyr-1.9.0/gcplyr/tests/testthat/test_utilityfunctions.R | 11 gcplyr-1.9.0/gcplyr/vignettes/gc01_gcplyr.Rmd | 73 gcplyr-1.9.0/gcplyr/vignettes/gc01_gcplyr.html | 114 - gcplyr-1.9.0/gcplyr/vignettes/gc02_import_reshape.Rmd | 6 gcplyr-1.9.0/gcplyr/vignettes/gc02_import_reshape.html | 22 gcplyr-1.9.0/gcplyr/vignettes/gc03_incorporate_designs.Rmd | 339 --- gcplyr-1.9.0/gcplyr/vignettes/gc03_incorporate_designs.html | 953 ++------- gcplyr-1.9.0/gcplyr/vignettes/gc04_preprocess_plot.Rmd | 8 gcplyr-1.9.0/gcplyr/vignettes/gc04_preprocess_plot.html | 16 gcplyr-1.9.0/gcplyr/vignettes/gc05_process.Rmd | 6 gcplyr-1.9.0/gcplyr/vignettes/gc05_process.html | 34 gcplyr-1.9.0/gcplyr/vignettes/gc06_analyze.Rmd | 220 +- gcplyr-1.9.0/gcplyr/vignettes/gc06_analyze.html | 826 ++++--- gcplyr-1.9.0/gcplyr/vignettes/gc07_noise.Rmd | 80 gcplyr-1.9.0/gcplyr/vignettes/gc07_noise.html | 327 +-- gcplyr-1.9.0/gcplyr/vignettes/gc08_conclusion.Rmd | 97 gcplyr-1.9.0/gcplyr/vignettes/gc08_conclusion.html | 241 +- gcplyr-1.9.0/gcplyr/vignettes/gc09_multiple_plates.Rmd | 4 gcplyr-1.9.0/gcplyr/vignettes/gc09_multiple_plates.html | 58 gcplyr-1.9.0/gcplyr/vignettes/gc10_using_make_design.Rmd |only gcplyr-1.9.0/gcplyr/vignettes/gc10_using_make_design.html |only 81 files changed, 3620 insertions(+), 3239 deletions(-)
Title: Estimation of the Rasch Model for Multistage Tests
Description: Provides conditional maximum likelihood (CML) item parameter estimation of sequential as well as cumulative deterministic multistage designs (Zwitser & Maris, 2015, <doi:10.1007/s11336-013-9369-6>) as well as probabilistic sequential and cumulative multistage designs (Steinfeld & Robitzsch, 2021, <doi:10.31234/osf.io/ew27f>). Supports CML item parameter estimation of conventional linear designs and additional functions for the likelihood ratio test (Andersen, 1973, <doi:10.1007/BF02291180>) as well as functions for the simulation of several kinds of multistage designs.
Author: Jan Steinfeld [cre, aut] ,
Alexander Robitzsch [aut]
Maintainer: Jan Steinfeld <jan.d.steinfeld@gmail.com>
Diff between tmt versions 0.3.1-2 dated 2022-05-17 and 0.3.1-10 dated 2024-03-11
DESCRIPTION | 14 MD5 | 36 +- NAMESPACE | 3 NEWS.md | 9 R/helper_functions.R | 2 R/tmt_gmc.R | 15 - R/tmt_sim.R | 2 README.md | 56 +-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 49 ++- inst/NEWS | 12 inst/doc/introduction_to_tmt.R | 12 inst/doc/introduction_to_tmt.html | 547 ++++++++++++++++++-------------------- man/tmt-package.Rd | 2 src/esf_mst_sum_vector.cpp | 18 - src/esf_mst_sum_vector_s2.h | 2 src/esf_nmst_sum_matrix.cpp | 6 tests/testthat/test-tmt_gmc.R | 4 19 files changed, 411 insertions(+), 378 deletions(-)
Title: Regression Modeling Strategies
Description: Regression modeling, testing, estimation, validation,
graphics, prediction, and typesetting by storing enhanced model design
attributes in the fit. 'rms' is a collection of functions that
assist with and streamline modeling. It also contains functions for
binary and ordinal logistic regression models, ordinal models for
continuous Y with a variety of distribution families, and the Buckley-James
multiple regression model for right-censored responses, and implements
penalized maximum likelihood estimation for logistic and ordinary
linear models. 'rms' works with almost any regression model, but it
was especially written to work with binary or ordinal regression
models, Cox regression, accelerated failure time models,
ordinary linear models, the Buckley-James model, generalized least
squares for serially or spatially correlated observations, generalized
linear models, and quantile regression.
Author: Frank E Harrell Jr <fh@fharrell.com>
Maintainer: Frank E Harrell Jr <fh@fharrell.com>
Diff between rms versions 6.7-1 dated 2023-09-11 and 6.8-0 dated 2024-03-11
DESCRIPTION | 12 +++++------ MD5 | 23 +++++++++++++-------- NAMESPACE | 6 +++-- NEWS | 6 +++++ R/Xcontrast.r | 8 +++---- R/orm.fit.s | 56 +++++++++++++++++++++++++++++++++++++++++++--------- R/poma.r | 13 +++++++----- R/rexVar.r |only inst/tests/rexVar.r |only man/Xcontrast.Rd | 5 +++- man/orm.fit.Rd | 5 +++- man/plot.rexVar.Rd |only man/poma.Rd | 4 ++- man/print.rexVar.Rd |only man/rexVar.Rd |only 15 files changed, 100 insertions(+), 38 deletions(-)
Title: Tools for the Analysis of Air Pollution Data
Description: Tools to analyse, interpret and understand air pollution
data. Data are typically regular time series and air quality
measurement, meteorological data and dispersion model output can be
analysed. The package is described in Carslaw and Ropkins (2012,
<doi:10.1016/j.envsoft.2011.09.008>) and subsequent papers.
Author: David Carslaw [aut, cre],
Jack Davison [aut],
Karl Ropkins [aut]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>
Diff between openair versions 2.18-0 dated 2023-10-09 and 2.18-2 dated 2024-03-11
DESCRIPTION | 10 ++++---- MD5 | 28 ++++++++++++------------ NEWS.md | 13 +++++++++++ R/aqStats.R | 4 --- R/corPlot.R | 47 +++++++++++++++++++++------------------- R/importMeta.R | 2 - R/openair.generics.R | 4 +-- R/polarCluster.R | 59 ++++++++++++++++++++++++++++----------------------- R/polarPlot.R | 12 ++++++++-- R/quickText.R | 1 R/trajCluster.R | 2 - build/partial.rdb |binary man/corPlot.Rd | 44 ++++++++++++++++++++------------------ man/importMeta.Rd | 2 - src/cluster.cpp | 6 +++-- 15 files changed, 134 insertions(+), 100 deletions(-)
Title: Annual Regional Database of the European Commission (ARDECO)
Description: A set of functions to access the 'ARDECO' (Annual Regional Database
of the European Commission) data directly from the official ARDECO public
repository through the exploitation of the 'ARDECO' APIs.
The APIs are completely transparent to the user and the provided functions
provide a direct access to the 'ARDECO' data.
The 'ARDECO' database is a collection of variables related to demography,
employment, labour market, domestic product, capital formation.
Each variable can be exposed in one or more units of measure as well as
refers to total values plus economic sectors.
The description of the 'ARDECO' database can be found at the following URL
<https://urban.jrc.ec.europa.eu/ardeco>.
Author: European Commission
Maintainer: European Commission <carmelo.attardo@ec.europa.eu>
Diff between ARDECO versions 0.1.1 dated 2023-11-30 and 1.0.0 dated 2024-03-11
DESCRIPTION | 10 +- MD5 | 16 +-- NAMESPACE | 1 NEWS | 5 + R/get_dataset_data.R | 208 +++++++++++++++++++++++++++++++++++++++++------- R/get_dataset_list.R | 20 +++- man/ardeco.Rd | 10 +- man/get_dataset_data.Rd | 65 +++++++++++---- man/get_dataset_list.Rd | 9 +- 9 files changed, 276 insertions(+), 68 deletions(-)
Title: Updated US State Facts and Figures
Description: Updated versions of the 1970's "US State Facts and Figures"
objects from the 'datasets' package included with R. The new data is
compiled from a number of sources, primarily from United States Census
Bureau or the relevant federal agency.
Author: Kiernan Nicholls [aut, cre, cph]
Maintainer: Kiernan Nicholls <k5cents@gmail.com>
Diff between usa versions 0.1.0 dated 2020-02-23 and 0.1.2 dated 2024-03-11
usa-0.1.0/usa/R/zzz.R |only usa-0.1.0/usa/data/datalist |only usa-0.1.2/usa/DESCRIPTION | 31 ++++++-------- usa-0.1.2/usa/MD5 | 62 ++++++++++++++-------------- usa-0.1.2/usa/NAMESPACE | 1 usa-0.1.2/usa/NEWS.md | 11 ++++ usa-0.1.2/usa/R/data.R | 18 ++++---- usa-0.1.2/usa/R/state-convert.R |only usa-0.1.2/usa/README.md | 54 ++++++++++++++---------- usa-0.1.2/usa/data/facts.rda |binary usa-0.1.2/usa/data/state.x19.rda |binary usa-0.1.2/usa/inst |only usa-0.1.2/usa/man/city.name.Rd | 4 + usa-0.1.2/usa/man/counties.Rd | 8 ++- usa-0.1.2/usa/man/county.name.Rd | 6 +- usa-0.1.2/usa/man/facts.Rd | 15 ++++-- usa-0.1.2/usa/man/people.Rd | 12 +++-- usa-0.1.2/usa/man/state.abb.Rd | 4 + usa-0.1.2/usa/man/state.area.Rd | 4 + usa-0.1.2/usa/man/state.center.Rd | 6 +- usa-0.1.2/usa/man/state.division.Rd | 4 + usa-0.1.2/usa/man/state.name.Rd | 4 + usa-0.1.2/usa/man/state.region.Rd | 4 + usa-0.1.2/usa/man/state.x19.Rd | 9 ++-- usa-0.1.2/usa/man/state_convert.Rd |only usa-0.1.2/usa/man/states.Rd | 6 +- usa-0.1.2/usa/man/territory.Rd | 6 +- usa-0.1.2/usa/man/territory.abb.Rd | 4 + usa-0.1.2/usa/man/territory.area.Rd | 4 + usa-0.1.2/usa/man/territory.center.Rd | 6 +- usa-0.1.2/usa/man/territory.name.Rd | 4 + usa-0.1.2/usa/man/zip.center.Rd | 6 +- usa-0.1.2/usa/man/zip.code.Rd | 4 + usa-0.1.2/usa/man/zipcodes.Rd | 6 +- usa-0.1.2/usa/tests/testthat/test-convert.R |only 35 files changed, 185 insertions(+), 118 deletions(-)
Title: Text Mining Package
Description: A framework for text mining applications within R.
Author: Ingo Feinerer [aut, cre] ,
Kurt Hornik [aut] ,
Artifex Software, Inc. [ctb, cph]
Maintainer: Ingo Feinerer <feinerer@logic.at>
Diff between tm versions 0.7-11 dated 2023-02-05 and 0.7-12 dated 2024-03-11
DESCRIPTION | 8 ++++---- MD5 | 23 ++++++++++++----------- NAMESPACE | 2 ++ build/partial.rdb |only build/vignette.rds |binary data/acq.rda |binary data/crude.rda |binary inst/NEWS.Rd | 7 +++++++ inst/doc/extensions.pdf |binary inst/doc/tm.pdf |binary man/acq.Rd | 7 ++++--- man/crude.Rd | 7 ++++--- man/readReut21578XML.Rd | 6 ++++-- 13 files changed, 37 insertions(+), 23 deletions(-)
Title: Read Subtitle Files as Tabular Data
Description: Read 'SubRip' <https://sourceforge.net/projects/subrip/>
subtitle files as data frames for easy text analysis or manipulation.
Easily shift numeric timings and export subtitles back into valid
'SubRip' timestamp format to sync subtitles and audio.
Author: Kiernan Nicholls [aut, cre, cph]
Maintainer: Kiernan Nicholls <k5cents@gmail.com>
Diff between srt versions 1.0.3 dated 2021-09-02 and 1.0.4 dated 2024-03-11
DESCRIPTION | 32 +++++++++++++++----------------- MD5 | 8 ++++---- NEWS.md | 4 ++++ README.md | 16 ++++++++-------- man/srt_shift.Rd | 6 ++++-- 5 files changed, 35 insertions(+), 31 deletions(-)
Title: Apache OpenNLP Jars and Basic English Language Models
Description: Apache OpenNLP jars and basic English language models.
Author: Kurt Hornik [aut, cre] ,
The Apache Software Foundation [ctb, cph] ,
JWNL development team [ctb, cph]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between openNLPdata versions 1.5.3-4 dated 2017-11-12 and 1.5.3-5 dated 2024-03-11
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- configure | 7 ++++--- 3 files changed, 10 insertions(+), 9 deletions(-)
Title: Washington Metropolitan Area Transit Authority API
Description: The Washington Metropolitan Area Transit Authority is a
government agency operating light rail and passenger buses in the
Washington D.C. area. With a free developer account, access their
'Metro Transparent Data Sets API' <https://developer.wmata.com/> to
return data frames of transit data for easy analysis.
Author: Kiernan Nicholls [aut, cre, cph]
Maintainer: Kiernan Nicholls <k5cents@gmail.com>
Diff between metro versions 0.9.2 dated 2023-10-28 and 0.9.3 dated 2024-03-11
metro-0.9.2/metro/LICENSE |only metro-0.9.3/metro/DESCRIPTION | 28 +--- metro-0.9.3/metro/MD5 | 49 +++---- metro-0.9.3/metro/NEWS.md | 10 + metro-0.9.3/metro/R/api.R | 5 metro-0.9.3/metro/R/bus-departs.R | 5 metro-0.9.3/metro/R/incidents-rail.R | 10 - metro-0.9.3/metro/R/rail-destination.R | 2 metro-0.9.3/metro/R/rail-position.R | 8 + metro-0.9.3/metro/R/rail-times.R | 6 metro-0.9.3/metro/README.md | 86 ++++++------- metro-0.9.3/metro/inst/TrainPositions.json |only metro-0.9.3/metro/inst/WORDLIST | 2 metro-0.9.3/metro/inst/jStationTimes.json |only metro-0.9.3/metro/man/bus_departs.Rd | 3 metro-0.9.3/metro/man/metro-package.Rd | 8 - metro-0.9.3/metro/man/rail_destination.Rd | 2 metro-0.9.3/metro/man/rail_positions.Rd | 2 metro-0.9.3/metro/tests/testthat/test-bus-departs.R | 4 metro-0.9.3/metro/tests/testthat/test-bus-stops.R | 4 metro-0.9.3/metro/tests/testthat/test-incidents-bus.R | 4 metro-0.9.3/metro/tests/testthat/test-incidents-elevator.R | 4 metro-0.9.3/metro/tests/testthat/test-incidents-rail.R | 8 - metro-0.9.3/metro/tests/testthat/test-next-bus.R | 4 metro-0.9.3/metro/tests/testthat/test-next-train.R | 4 metro-0.9.3/metro/tests/testthat/test-rail-stations.R | 2 metro-0.9.3/metro/tests/testthat/test-rail-times.R | 2 27 files changed, 153 insertions(+), 109 deletions(-)
More information about LipinskiFilters at CRAN
Permanent link
Title: Select from a Set of Strings
Description: A backend for the selecting functions of the 'tidyverse'. It
makes it easy to implement select-like functions in your own packages
in a way that is consistent with other 'tidyverse' interfaces for
selection.
Author: Lionel Henry [aut, cre],
Hadley Wickham [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Lionel Henry <lionel@posit.co>
Diff between tidyselect versions 1.2.0 dated 2022-10-10 and 1.2.1 dated 2024-03-11
DESCRIPTION | 22 - MD5 | 62 +-- NEWS.md | 12 R/conditions.R | 13 R/eval-relocate.R | 3 R/eval-walk.R | 6 R/lifecycle-deprecated.R | 2 R/sets.R | 46 -- R/utils.R | 8 build/vignette.rds |binary inst/doc/syntax.R | 18 inst/doc/syntax.html | 522 +++++--------------------- inst/doc/tidyselect.R | 18 inst/doc/tidyselect.html | 483 +++++------------------- man/all_of.Rd | 14 man/everything.Rd | 10 man/faq-external-vector.Rd | 21 - man/faq-selection-context.Rd | 11 man/faq/external-vector.Rmd | 16 man/language.Rd | 37 - man/starts_with.Rd | 19 man/tidyselect-package.Rd | 6 man/vars_select.Rd | 2 man/where.Rd | 12 tests/testthat/_snaps/eval-bool.md | 6 tests/testthat/_snaps/eval-relocate.md | 12 tests/testthat/_snaps/eval-select.md | 62 ++- tests/testthat/_snaps/eval-walk.md | 2 tests/testthat/_snaps/helpers-vector.md | 30 - tests/testthat/_snaps/helpers-where.md | 2 tests/testthat/_snaps/lifecycle-deprecated.md | 38 - tests/testthat/_snaps/vars-pull.md | 72 ++- 32 files changed, 539 insertions(+), 1048 deletions(-)
Title: Tools for the Analysis of Epidemiological Data
Description: Tools for the analysis of epidemiological and surveillance data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, computation of confidence intervals around incidence risk and incidence rate estimates and sample size calculations for cross-sectional, case-control and cohort studies. Surveillance tools include functions to calculate an appropriate sample size for 1- and 2-stage representative freedom surveys, functions to estimate surveillance system sensitivity and functions to support scenario tree modelling analyses.
Author: Mark Stevenson [aut, cre] ,
Evan Sergeant [aut],
Cord Heuer [ctb],
Telmo Nunes [ctb],
Cord Heuer [ctb],
Jonathon Marshall [ctb],
Javier Sanchez [ctb],
Ron Thornton [ctb],
Jeno Reiczigel [ctb],
Jim Robison-Cox [ctb],
Paola Sebastiani [ctb],
Peter Soly [...truncated...]
Maintainer: Mark Stevenson <mark.stevenson1@unimelb.edu.au>
Diff between epiR versions 2.0.68 dated 2024-02-18 and 2.0.70 dated 2024-03-11
DESCRIPTION | 8 MD5 | 22 +- NEWS | 7 R/epi.2by2.R | 301 +++++++++++++++++------------ inst/doc/epiR_descriptive.R | 2 inst/doc/epiR_descriptive.html | 18 - inst/doc/epiR_measures_of_association.R | 34 +-- inst/doc/epiR_measures_of_association.html | 18 - inst/doc/epiR_sample_size.R | 2 inst/doc/epiR_sample_size.html | 4 inst/doc/epiR_surveillance.R | 2 inst/doc/epiR_surveillance.html | 14 - 12 files changed, 248 insertions(+), 184 deletions(-)
Title: Create Compact Hash Digests of R Objects
Description: Implementation of a function 'digest()' for the creation of hash
digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32',
'xxhash', 'murmurhash', 'spookyhash', 'blake3', 'crc32c', 'xxh3_64', and 'xxh3_128'
algorithms) permitting easy comparison of R language objects, as well as functions
such as'hmac()' to create hash-based message authentication code. Please note that
this package is not meant to be deployed for cryptographic purposes for which more
comprehensive (and widely tested) libraries such as 'OpenSSL' should be used.
Author: Dirk Eddelbuettel <edd@debian.org> with contributions
by Antoine Lucas, Jarek Tuszynski, Henrik Bengtsson, Simon Urbanek,
Mario Frasca, Bryan Lewis, Murray Stokely, Hannes Muehleisen,
Duncan Murdoch, Jim Hester, Wush Wu, Qiang Kou, Thierry Onkelinx,
[...truncated...]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between digest versions 0.6.34 dated 2024-01-11 and 0.6.35 dated 2024-03-11
ChangeLog | 17 DESCRIPTION | 19 MD5 | 24 R/digest.R | 16 R/vdigest.R | 9 README.md | 7 build/vignette.rds |binary inst/tinytest/test_digest.R | 42 man/digest.Rd | 9 man/vdigest.Rd | 6 src/digest.c | 92 src/xxhash.c | 1059 ------ src/xxhash.h | 7161 ++++++++++++++++++++++++++++++++++++++++++-- 13 files changed, 7172 insertions(+), 1289 deletions(-)
Title: R Commander Plug-in for University Level Applied Statistics
Description: An R Commander "plug-in" extending functionality of linear models
and providing an interface to Partial Least Squares Regression and Linear and
Quadratic Discriminant analysis. Several statistical summaries are extended,
predictions are offered for additional types of analyses, and extra plots, tests
and mixed models are available.
Author: Kristian Hovde Liland [aut, cre],
Solve Saeboe [aut]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between RcmdrPlugin.NMBU versions 1.8.14 dated 2023-08-16 and 1.8.15 dated 2024-03-11
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS | 4 ++++ R/NMBU.Graphics.R | 48 ++++++++++++++++++++++++------------------------ 4 files changed, 36 insertions(+), 32 deletions(-)
More information about RcmdrPlugin.NMBU at CRAN
Permanent link
Title: GeoServer REST API R Interface
Description: Provides an R interface to the GeoServer REST API, allowing to upload
and publish data in a GeoServer web-application and expose data to OGC Web-Services.
The package currently supports all CRUD (Create,Read,Update,Delete) operations
on GeoServer workspaces, namespaces, datastores (stores of vector data), featuretypes,
layers, styles, as well as vector data upload operations. For more information about
the GeoServer REST API, see <https://docs.geoserver.org/stable/en/user/rest/>.
Author: Emmanuel Blondel [aut, cre]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between geosapi versions 0.7 dated 2024-02-27 and 0.7-1 dated 2024-03-11
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 6 ++++++ R/GSRESTResource.R | 3 ++- README.md | 2 +- 5 files changed, 17 insertions(+), 10 deletions(-)
Title: Extended Multiplicative Signal Correction
Description: Background correction of spectral like data. Handles variations in
scaling, polynomial baselines, interferents, constituents and replicate variation.
Parameters for corrections are stored for further analysis, and spectra are corrected
accordingly.
Author: Kristian Hovde Liland [aut, cre]
,
Ulf Geir Indahl [ctb]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between EMSC versions 0.9.3 dated 2021-09-20 and 0.9.4 dated 2024-03-11
DESCRIPTION | 10 MD5 | 36 +- NAMESPACE | 48 +-- NEWS | 22 - R/EMSC.R | 588 ++++++++++++++++++------------------- R/EMSC_results.R | 730 +++++++++++++++++++++++------------------------ R/SavitzkyGolay.R | 100 +++--- R/Utilities.R | 112 +++---- R/fishoil.R | 30 - R/milk.R | 30 - README.md | 42 +- man/EMSC.Rd | 136 ++++---- man/EMSC_model.Rd | 90 ++--- man/SavitzkyGolay.Rd | 84 ++--- man/fishoil.Rd | 44 +- man/milk.Rd | 44 +- man/orthogonalVectors.Rd | 64 ++-- man/plot.EMSC.Rd | 212 ++++++------- man/predict.EMSC.Rd | 70 ++-- 19 files changed, 1248 insertions(+), 1244 deletions(-)
Title: Tools for Handling Extraction of Features from Time Series
Description: Consolidates and calculates different sets of time-series features from multiple
'R' and 'Python' packages including 'Rcatch22' Henderson, T. (2021) <doi:10.5281/zenodo.5546815>,
'feasts' O'Hara-Wild, M., Hyndman, R., and Wang, E. (2021) <https://CRAN.R-project.org/package=feasts>,
'tsfeatures' Hyndman, R., Kang, Y., Montero-Manso, P., Talagala, T., Wang, E., Yang, Y., and O'Hara-Wild, M. (2020)
<https://CRAN.R-project.org/package=tsfeatures>, 'tsfresh' Christ, M., Braun, N., Neuffer, J.,
and Kempa-Liehr A.W. (2018) <doi:10.1016/j.neucom.2018.03.067>, 'TSFEL' Barandas, M., et al. (2020)
<doi:10.1016/j.softx.2020.100456>, and 'Kats' Facebook Infrastructure Data Science (2021)
<https://facebookresearch.github.io/Kats/>.
Author: Trent Henderson [cre, aut],
Annie Bryant [ctb]
Maintainer: Trent Henderson <then6675@uni.sydney.edu.au>
Diff between theft versions 0.5.4.1 dated 2023-10-06 and 0.6.1 dated 2024-03-11
theft-0.5.4.1/theft/R/calculate_interval.R |only theft-0.5.4.1/theft/R/compare_features.R |only theft-0.5.4.1/theft/R/filter_duplicates.R |only theft-0.5.4.1/theft/R/find_good_features.R |only theft-0.5.4.1/theft/R/fit_models.R |only theft-0.5.4.1/theft/R/get_rescale_vals.R |only theft-0.5.4.1/theft/R/mywhere.R |only theft-0.5.4.1/theft/R/normalise.R |only theft-0.5.4.1/theft/R/plots.R |only theft-0.5.4.1/theft/R/reduce_dims.R |only theft-0.5.4.1/theft/R/resample_data.R |only theft-0.5.4.1/theft/R/resampled_ttest.R |only theft-0.5.4.1/theft/R/rescalers.R |only theft-0.5.4.1/theft/R/select_stat_cols.R |only theft-0.5.4.1/theft/R/stat_test.R |only theft-0.5.4.1/theft/R/tsfeature_classifier.R |only theft-0.5.4.1/theft/man/calculate_interval.Rd |only theft-0.5.4.1/theft/man/compare_features.Rd |only theft-0.5.4.1/theft/man/filter_duplicates.Rd |only theft-0.5.4.1/theft/man/filter_good_features.Rd |only theft-0.5.4.1/theft/man/find_good_features.Rd |only theft-0.5.4.1/theft/man/fit_models.Rd |only theft-0.5.4.1/theft/man/get_rescale_vals.Rd |only theft-0.5.4.1/theft/man/make_title.Rd |only theft-0.5.4.1/theft/man/maxabs_scaler.Rd |only theft-0.5.4.1/theft/man/minmax_scaler.Rd |only theft-0.5.4.1/theft/man/normalise.Rd |only theft-0.5.4.1/theft/man/plot.feature_calculations.Rd |only theft-0.5.4.1/theft/man/plot.low_dimension.Rd |only theft-0.5.4.1/theft/man/reduce_dims.Rd |only theft-0.5.4.1/theft/man/resample_data.Rd |only theft-0.5.4.1/theft/man/resampled_ttest.Rd |only theft-0.5.4.1/theft/man/rescale_zscore.Rd |only theft-0.5.4.1/theft/man/robustsigmoid_scaler.Rd |only theft-0.5.4.1/theft/man/select_stat_cols.Rd |only theft-0.5.4.1/theft/man/sigmoid_scaler.Rd |only theft-0.5.4.1/theft/man/stat_test.Rd |only theft-0.5.4.1/theft/man/tsfeature_classifier.Rd |only theft-0.5.4.1/theft/man/zscore_scaler.Rd |only theft-0.5.4.1/theft/tests/testthat/test-compare_features.R |only theft-0.5.4.1/theft/tests/testthat/test-tsfeature_classifier.R |only theft-0.5.4.1/theft/vignettes/workflow-graphic_v05.png |only theft-0.6.1/theft/DESCRIPTION | 24 theft-0.6.1/theft/LICENSE | 2 theft-0.6.1/theft/MD5 | 105 theft-0.6.1/theft/NAMESPACE | 185 - theft-0.6.1/theft/R/calculate_features.R | 1010 +++--- theft-0.6.1/theft/R/check_vector_quality.R | 20 theft-0.6.1/theft/R/data.R | 52 theft-0.6.1/theft/R/init_theft.R | 36 theft-0.6.1/theft/R/install_python_pkgs.R | 61 theft-0.6.1/theft/R/process_hctsa_file.R | 130 theft-0.6.1/theft/R/theft.R | 49 theft-0.6.1/theft/R/zzz.R |only theft-0.6.1/theft/README.md | 298 + theft-0.6.1/theft/build/vignette.rds |binary theft-0.6.1/theft/inst/doc/theft.R | 232 - theft-0.6.1/theft/inst/doc/theft.Rmd | 539 --- theft-0.6.1/theft/inst/doc/theft.html | 1643 +++------- theft-0.6.1/theft/inst/python/kats_calculator.py | 64 theft-0.6.1/theft/inst/python/tsfel_calculator.py | 46 theft-0.6.1/theft/inst/python/tsfresh_calculator.py | 46 theft-0.6.1/theft/man/calculate_features.Rd | 115 theft-0.6.1/theft/man/check_vector_quality.Rd | 40 theft-0.6.1/theft/man/feature_list.Rd | 40 theft-0.6.1/theft/man/figures/theft-ecosystem.png |only theft-0.6.1/theft/man/figures/theft-packages.png |only theft-0.6.1/theft/man/init_theft.Rd | 49 theft-0.6.1/theft/man/install_python_pkgs.Rd | 47 theft-0.6.1/theft/man/process_hctsa_file.Rd | 40 theft-0.6.1/theft/man/simData.Rd | 44 theft-0.6.1/theft/man/theft.Rd | 20 theft-0.6.1/theft/tests/testthat.R | 8 theft-0.6.1/theft/tests/testthat/helper-core_data.R | 22 theft-0.6.1/theft/tests/testthat/test-calculate_features.R | 63 theft-0.6.1/theft/vignettes/theft.Rmd | 539 --- 76 files changed, 2227 insertions(+), 3342 deletions(-)
Title: 'Coroutines' for R
Description: Provides 'coroutines' for R, a family of functions that can
be suspended and resumed later on. This includes 'async' functions
(which await) and generators (which yield). 'Async' functions are
based on the concurrency framework of the 'promises' package.
Generators are based on a dependency free iteration protocol defined
in 'coro' and are compatible with iterators from the 'reticulate'
package.
Author: Lionel Henry [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Lionel Henry <lionel@posit.co>
Diff between coro versions 1.0.3 dated 2022-07-19 and 1.0.4 dated 2024-03-11
DESCRIPTION | 16 ++++++++-------- MD5 | 18 +++++++++--------- NEWS.md | 5 +++++ R/utils-node.R | 2 +- R/utils.R | 2 +- build/vignette.rds |binary inst/doc/generator.R | 2 +- inst/doc/generator.html | 17 ++++++++++++----- man/coro-package.Rd | 4 ++-- man/iterator.Rd | 26 +++++++------------------- 10 files changed, 46 insertions(+), 46 deletions(-)
Title: Simple and Scalable Statistical Modelling in R
Description: Write statistical models in R and fit them by MCMC and
optimisation on CPUs and GPUs, using Google 'TensorFlow'. greta lets
you write your own model like in BUGS, JAGS and Stan, except that you
write models right in R, it scales well to massive datasets, and it’s
easy to extend and build on. See the website for more information,
including tutorials, examples, package documentation, and the greta
forum.
Author: Nick Golding [aut] ,
Nicholas Tierney [aut, cre] ,
Simon Dirmeier [ctb],
Adam Fleischhacker [ctb],
Shirin Glander [ctb],
Martin Ingram [ctb],
Lee Hazel [ctb],
Lionel Hertzog [ctb],
Tiphaine Martin [ctb],
Matt Mulvahill [ctb],
Michael Quinn [ctb],
Dav [...truncated...]
Maintainer: Nicholas Tierney <nicholas.tierney@gmail.com>
Diff between greta versions 0.4.4 dated 2024-02-01 and 0.4.5 dated 2024-03-11
DESCRIPTION | 6 MD5 | 28 - NEWS.md | 6 R/progress_bar.R | 2 build/vignette.rds |binary inst/doc/example_models.R | 577 --------------------- inst/doc/example_models.Rmd | 2 inst/doc/example_models.html | 1149 ------------------------------------------- inst/doc/get_started.R | 92 +-- inst/doc/get_started.html | 251 ++------- inst/examples/air.Rmd | 2 inst/examples/beetles.Rmd | 2 man/model.Rd | 2 tests/testthat/Rplots.pdf |binary vignettes/example_models.Rmd | 2 15 files changed, 147 insertions(+), 1974 deletions(-)
Title: Adrian Dusa's Miscellaneous
Description: Contains functions used across packages 'DDIwR', 'QCA' and 'venn'.
Interprets and translates, factorizes and negates SOP - Sum of Products
expressions, for both binary and multi-value crisp sets, and extracts
information (set names, set values) from those expressions. Other functions
perform various other checks if possibly numeric (even if all numbers reside
in a character vector) and coerce to numeric, or check if the numbers are
whole. It also offers, among many others, a highly versatile recoding
routine and some more flexible alternatives to the base functions 'with()'
and 'within()'.
SOP simplification functions in this package use related minimization from
package 'QCA', which is recommended to be installed despite not being listed
in the Imports field, due to circular dependency issues.
Author: Adrian Dusa [aut, cre, cph]
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between admisc versions 0.34 dated 2023-12-08 and 0.35 dated 2024-03-11
DESCRIPTION | 6 +- MD5 | 136 +++++++++++++++++++++++++------------------------- NAMESPACE | 2 R/asNumeric.R | 15 ++--- R/asSOP.R | 15 ++--- R/brackets.R | 15 ++--- R/change.R | 42 ++++++++------- R/checkMV.R | 15 ++--- R/checkSubset.R | 15 ++--- R/checkValid.R | 15 ++--- R/classify.R | 15 ++--- R/coerceMode.R | 15 ++--- R/combnk.R | 15 ++--- R/compute.R | 21 +++---- R/dimnames.R | 15 ++--- R/equality.R | 15 ++--- R/expand.R | 15 ++--- R/export.R | 15 ++--- R/factorize.R | 15 ++--- R/finvert.R | 15 ++--- R/frelevel.R | 15 ++--- R/getInfo.R | 15 ++--- R/getLevels.R | 15 ++--- R/getMatrix.R | 15 ++--- R/getName.R | 15 ++--- R/hclr.R | 15 ++--- R/inside.R | 31 ++++++++--- R/intersection.R | 15 ++--- R/invert.R | 15 ++--- R/listRDA.R | 15 ++--- R/mvSOP.R | 15 ++--- R/negate.R | 15 ++--- R/numdec.R | 15 ++--- R/objRDA.R | 15 ++--- R/onLoad.R | 15 ++--- R/overwrite.R | 15 ++--- R/pad.R | 15 ++--- R/permutations.R | 15 ++--- R/possibleNumeric.R | 15 ++--- R/prettyString.R | 15 ++--- R/prettyTable.R | 15 ++--- R/print.R | 15 ++--- R/recode.R | 25 ++++----- R/recreate.R | 44 +++++++--------- R/reload.R | 15 ++--- R/replaceText.R | 15 ++--- R/scan.clipboard.R | 15 ++--- R/simplify.R | 15 ++--- R/sortExpressions.R | 15 ++--- R/stopError.R | 15 ++--- R/string.R | 15 ++--- R/tagged.R | 15 ++--- R/tilde.R | 15 ++--- R/translate.R | 15 ++--- R/tryCatchWEM.R | 15 ++--- R/unicode.R | 15 ++--- R/uninstall.R | 15 ++--- R/unload.R | 15 ++--- R/unlockEnvironment.R | 15 ++--- R/using.R | 31 ++++++++--- R/validateNames.R | 15 ++--- R/verify.R | 15 ++--- R/wholeNumeric.R | 15 ++--- R/write.clipboard.R | 15 ++--- R/writePrimeimp.R | 15 ++--- inst/ChangeLog | 6 ++ man/admisc_package.Rd | 4 - man/change.Rd | 9 ++- man/recreate.Rd | 5 + 69 files changed, 652 insertions(+), 550 deletions(-)
Title: Spatial Analysis of Vectra Immunoflourescent Data
Description: Visualization and analysis of Vectra Immunoflourescent
data. Options for calculating both the univariate and bivariate Ripley's K
are included. Calculations are performed using a permutation-based
approach presented by Wilson et al. <doi:10.1101/2021.04.27.21256104>.
Author: Jordan Creed [aut],
Ram Thapa [aut],
Christopher Wilson [aut],
Alex Soupir [aut],
Oscar Ospina [aut],
Julia Wrobel [aut],
Brooke Fridley [cph],
Fridley Lab [cre]
Maintainer: Fridley Lab <fridley.lab@moffitt.org>
Diff between spatialTIME versions 1.3.4-2 dated 2023-12-19 and 1.3.4-3 dated 2024-03-11
spatialTIME-1.3.4-2/spatialTIME/inst/doc/deriving_functions.R |only spatialTIME-1.3.4-2/spatialTIME/inst/doc/deriving_functions.Rmd |only spatialTIME-1.3.4-2/spatialTIME/inst/doc/deriving_functions.html |only spatialTIME-1.3.4-2/spatialTIME/vignettes/deriving_functions.Rmd |only spatialTIME-1.3.4-3/spatialTIME/DESCRIPTION | 6 spatialTIME-1.3.4-3/spatialTIME/MD5 | 20 +- spatialTIME-1.3.4-3/spatialTIME/R/nn_g.R | 2 spatialTIME-1.3.4-3/spatialTIME/R/ripleys_k.R | 76 ++++++---- spatialTIME-1.3.4-3/spatialTIME/build/vignette.rds |binary spatialTIME-1.3.4-3/spatialTIME/inst/doc/intro.Rmd | 2 spatialTIME-1.3.4-3/spatialTIME/inst/doc/intro.html | 16 +- spatialTIME-1.3.4-3/spatialTIME/man/ripleys_k.Rd | 2 spatialTIME-1.3.4-3/spatialTIME/vignettes/intro.Rmd | 2 13 files changed, 72 insertions(+), 54 deletions(-)
Title: Kiernan Nicholls Miscellaneous
Description: Quality of life functions for interactive programming.
Shortcuts for common combinations of functions or different default
arguments. Not to be used in production level scripts, but useful for
exploring and quickly manipulating data for easy analysis. Also
imports a variety of packages to facilitate the installation of those
imported packages on the host machine.
Author: Kiernan Nicholls [aut, cre, cph]
Maintainer: Kiernan Nicholls <k5cents@gmail.com>
Diff between k5 versions 0.0.5 dated 2023-01-24 and 0.2.1 dated 2024-03-11
k5-0.0.5/k5/R/aws.R |only k5-0.0.5/k5/man/aws_info.Rd |only k5-0.0.5/k5/man/load.packages.Rd |only k5-0.0.5/k5/tests/testthat/test-aws.R |only k5-0.2.1/k5/DESCRIPTION | 32 +++++++++++++++------------- k5-0.2.1/k5/MD5 | 25 ++++++++++------------ k5-0.2.1/k5/NAMESPACE | 21 ++++++++---------- k5-0.2.1/k5/NEWS.md | 11 +++++++++ k5-0.2.1/k5/R/col-stats.R |only k5-0.2.1/k5/R/packages.R | 21 +++++++++--------- k5-0.2.1/k5/README.md | 34 +++++++++++++++++++----------- k5-0.2.1/k5/data/gaa.rda |binary k5-0.2.1/k5/inst/PACKAGES | 3 -- k5-0.2.1/k5/man/load_my_packages.Rd |only k5-0.2.1/k5/man/var_missing.Rd |only k5-0.2.1/k5/tests/testthat/test-package.R | 6 ++--- k5-0.2.1/k5/tests/testthat/test-wc.R | 2 - 17 files changed, 87 insertions(+), 68 deletions(-)
Title: Wrap Vectors in Markdown Formatting
Description: Ease the transition between R vectors and markdown text. With
'gluedown' and 'rmarkdown', users can create traditional vectors in R,
glue those strings together with the markdown syntax, and print those
formatted vectors directly to the document. This package primarily
uses GitHub Flavored Markdown (GFM), an offshoot of the unambiguous
CommonMark specification by John MacFarlane (2019)
<https://spec.commonmark.org/>.
Author: Kiernan Nicholls [aut, cre, cph]
Maintainer: Kiernan Nicholls <k5cents@gmail.com>
Diff between gluedown versions 1.0.8 dated 2023-12-20 and 1.0.9 dated 2024-03-11
DESCRIPTION | 35 ++--- MD5 | 24 ++-- NEWS.md | 4 R/md-issue.R | 2 README.md | 14 +- build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/github-spec.R | 2 inst/doc/github-spec.html | 220 ++++++++++++++++++------------------- inst/doc/literal-programming.html | 2 man/gluedown-package.Rd | 8 - man/md_issue.Rd | 2 tests/testthat/test-github-issue.R | 6 - 13 files changed, 161 insertions(+), 160 deletions(-)
Title: Retrieve ESPN Fantasy Football Data
Description: Format the raw data from the ESPN fantasy football API
<https://fantasy.espn.com/apis/v3/games/ffl/> as data frames.
Retrieve data on public leagues, rosters, athletes, and matches.
Author: Kiernan Nicholls [aut, cre, cph]
Maintainer: Kiernan Nicholls <k5cents@gmail.com>
Diff between fflr versions 2.2.2 dated 2024-02-03 and 2.2.3 dated 2024-03-11
fflr-2.2.2/fflr/LICENSE |only fflr-2.2.3/fflr/DESCRIPTION | 16 ++++++++++------ fflr-2.2.3/fflr/MD5 | 15 +++++++-------- fflr-2.2.3/fflr/NEWS.md | 5 +++++ fflr-2.2.3/fflr/R/api.R | 2 +- fflr-2.2.3/fflr/README.md | 12 ++++++------ fflr-2.2.3/fflr/inst/WORDLIST | 3 +-- fflr-2.2.3/fflr/inst/doc/fantasy-football.html | 17 +++++++---------- fflr-2.2.3/fflr/man/fflr-package.Rd | 11 ++++++++++- 9 files changed, 47 insertions(+), 34 deletions(-)
Title: Analysis of Bivariate Survival Data Based on Copulas
Description: Simulating bivariate survival data from copula models.
Estimation of the association parameter in copula models.
Two different ways to estimate the association parameter in copula models are implemented.
A goodness-of-fit test for a given copula model is implemented.
See Emura, Lin and Wang (2010) <doi:10.1016/j.csda.2010.03.013> for details.
Author: Takeshi Emura
Maintainer: Takeshi Emura <takeshiemura@gmail.com>
Diff between Copula.surv versions 1.3 dated 2024-02-25 and 1.4 dated 2024-03-11
DESCRIPTION | 8 ++++---- MD5 | 4 +++- R/simu.GB.R |only man/simu.GB.Rd |only 4 files changed, 7 insertions(+), 5 deletions(-)
Title: Gene Association Network-Based Pathway Analysis (GANPA)
Description: A network-based gene weighting algorithm for pathway enrichment analysis, using either RNA-seq or microarray data. Zhaoyuan Fang, Weidong Tian and Hongbin Ji (2012) <doi:10.1038/cr.2011.149>.
Author: Zhaoyuan Fang, Weidong Tian and Hongbin Ji
Maintainer: Zhaoyuan Fang <fangzhaoyuan@sibs.ac.cn>
Diff between GANPA versions 1.1 dated 2021-01-28 and 1.2 dated 2024-03-11
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- man/GANPA-package.Rd | 10 ---------- man/GSE.Test.Main.Rd | 2 +- 4 files changed, 8 insertions(+), 18 deletions(-)