Title: Modern Database Engine for Complex Data Based on
Multi-Dimensional Arrays
Description: The modern database 'TileDB' introduces a powerful on-disk
format for storing and accessing any complex data based on multi-dimensional
arrays. It supports dense and sparse arrays, dataframes and key-values stores,
cloud storage ('S3', 'GCS', 'Azure'), chunked arrays, multiple compression,
encryption and checksum filters, uses a fully multi-threaded implementation,
supports parallel I/O, data versioning ('time travel'), metadata and groups.
It is implemented as an embeddable cross-platform C++ library with APIs from
several languages, and integrations. This package provides the R support.
Author: TileDB, Inc. [aut, cph],
Dirk Eddelbuettel [cre]
Maintainer: Dirk Eddelbuettel <dirk@tiledb.com>
Diff between tiledb versions 0.25.0 dated 2024-03-20 and 0.26.0 dated 2024-04-15
DESCRIPTION | 43 +-- LICENSE | 2 MD5 | 69 +++-- NAMESPACE | 1 NEWS.md | 45 +++ R/Array.R | 8 R/ArraySchema.R | 4 R/ArrowIO.R | 41 ++- R/Attribute.R | 2 R/Dim.R | 6 R/FragmentInfo.R | 30 +- R/Init.R | 4 R/Object.R | 12 - R/Query.R | 4 R/QueryCondition.R | 2 R/RcppExports.R | 38 --- R/VFS.R | 72 +++--- configure | 33 +- configure.ac | 17 - inst/include/tiledb.h | 4 inst/tinytest/test_arrowio.R | 52 ++-- inst/tinytest/test_vfs.R | 6 man/tiledb_arrow_array_ptr.Rd | 6 man/tiledb_attr.Rd | 4 man/tiledb_dim.Rd | 4 man/tiledb_object_rm.Rd | 2 man/tiledb_query_condition_create.Rd | 2 man/tiledb_query_export_buffer.Rd | 4 man/tiledb_query_import_buffer.Rd | 6 man/tiledb_vfs_ls_recursive.Rd |only src/RcppExports.cpp | 112 +++------ src/arrowio.cpp | 407 +++++------------------------------ src/deprecation.cpp | 11 src/libtiledb.cpp | 63 ++++- tools/fetchTileDB.sh | 2 tools/tiledbVersion.txt | 4 36 files changed, 462 insertions(+), 660 deletions(-)
Title: Preparing, Checking, and Submitting Articles to the 'R Journal'
Description: Create an 'R Journal' 'Rmarkdown' template article, that will
generate html and pdf versions of your paper. Check that the paper folder
has all the required components needed for submission.
Examples of 'R Journal' publications can be found at
<https://journal.r-project.org>.
Author: Mitchell O'Hara-Wild [aut],
Stephanie Kobakian [aut],
H. Sherry Zhang [aut],
Di Cook [aut, cre] ,
Simon Urbanek [aut],
Christophe Dervieux [aut]
Maintainer: Di Cook <dicook@monash.edu>
Diff between rjtools versions 1.0.12 dated 2023-10-07 and 1.0.13 dated 2024-04-15
rjtools-1.0.12/rjtools/inst/sample-article/motivation-letter.md |only rjtools-1.0.12/rjtools/inst/sample-article/penguins.png |only rjtools-1.0.13/rjtools/DESCRIPTION | 6 - rjtools-1.0.13/rjtools/MD5 | 54 +++++----- rjtools-1.0.13/rjtools/NEWS.md | 6 + rjtools-1.0.13/rjtools/R/check.R | 25 ++-- rjtools-1.0.13/rjtools/R/rj_article.R | 21 +++ rjtools-1.0.13/rjtools/R/rj_pdf_article.R | 13 ++ rjtools-1.0.13/rjtools/R/rj_web_issue.R | 20 ++- rjtools-1.0.13/rjtools/build/vignette.rds |binary rjtools-1.0.13/rjtools/inst/doc/article_template.R | 4 rjtools-1.0.13/rjtools/inst/doc/check_functions.R | 2 rjtools-1.0.13/rjtools/inst/doc/check_functions.Rmd | 8 - rjtools-1.0.13/rjtools/inst/doc/check_functions.html | 24 ++-- rjtools-1.0.13/rjtools/inst/doc/create_article.R | 2 rjtools-1.0.13/rjtools/inst/doc/create_article.Rmd | 2 rjtools-1.0.13/rjtools/inst/doc/create_article.html | 6 - rjtools-1.0.13/rjtools/inst/doc/format-details.R | 2 rjtools-1.0.13/rjtools/inst/doc/format-details.Rmd | 39 ++++++- rjtools-1.0.13/rjtools/inst/doc/format-details.html | 31 +++++ rjtools-1.0.13/rjtools/inst/rjdistill.html | 18 ++- rjtools-1.0.13/rjtools/inst/sample-article/article.Rmd | 2 rjtools-1.0.13/rjtools/inst/sample-article/data |only rjtools-1.0.13/rjtools/inst/sample-article/figures |only rjtools-1.0.13/rjtools/inst/sample-article/motivation-letter |only rjtools-1.0.13/rjtools/inst/sample-article/scripts |only rjtools-1.0.13/rjtools/inst/tex/RJournal.sty | 1 rjtools-1.0.13/rjtools/tests/testthat/test-check.R | 6 - rjtools-1.0.13/rjtools/vignettes/check_functions.Rmd | 8 - rjtools-1.0.13/rjtools/vignettes/create_article.Rmd | 2 rjtools-1.0.13/rjtools/vignettes/format-details.Rmd | 39 ++++++- 31 files changed, 236 insertions(+), 105 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of
use. Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions. Various
matrix decompositions are provided through optional integration with
LAPACK and ATLAS libraries. The 'RcppArmadillo' package includes the
header files from the templated 'Armadillo' library. Thus users do
not need to install 'Armadillo' itself in order to use
'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is licensed
under Apache License 2; previous releases were under licensed as MPL
2.0 from version 3.800.0 onwards and LGPL-3 prior to that;
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed
under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Dirk Eddelbuettel, Romain Francois, Doug Bates, Binxiang Ni, and Conrad Sanderson
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.12.8.2.0 dated 2024-04-05 and 0.12.8.2.1 dated 2024-04-15
ChangeLog | 10 ++++++++++ DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ inst/NEWS.Rd | 7 +++++++ inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-sparseMatrix.pdf |binary inst/tinytest/test_scipy2r.R | 2 +- 7 files changed, 28 insertions(+), 11 deletions(-)
Title: Optimal Distribution Preserving Down-Sampling of Bio-Medical
Data
Description: An optimized method for distribution-preserving class-proportional down-sampling of bio-medical data.
Author: Jorn Lotsch [aut,cre] ,
Sebastian Malkusch [aut] ,
Alfred Ultsch [aut]
Maintainer: Jorn Lotsch <j.lotsch@em.uni-frankfurt.de>
Diff between opdisDownsampling versions 1.0 dated 2024-04-14 and 1.0.1 dated 2024-04-15
opdisDownsampling-1.0.1/opdisDownsampling/DESCRIPTION | 6 +++--- opdisDownsampling-1.0.1/opdisDownsampling/MD5 | 3 +-- opdisDownsampling-1.0/opdisDownsampling/R/globals.R |only 3 files changed, 4 insertions(+), 5 deletions(-)
More information about opdisDownsampling at CRAN
Permanent link
Title: Bayesian Variable Selection Methods for Multivariate Data
Description: Bayesian variable selection methods for data with multivariate responses and multiple covariates. The package contains implementations of multivariate Bayesian variable selection methods for continuous data (Lee et al., Biometrics, 2017 <doi:10.1111/biom.12557>) and zero-inflated count data (Lee et al., Biostatistics, 2020 <doi:10.1093/biostatistics/kxy067>).
Author: Kyu Ha Lee, Mahlet G. Tadesse, Brent A. Coull, Jacqueline R. Starr
Maintainer: Kyu Ha Lee <klee15239@gmail.com>
Diff between mBvs versions 1.6 dated 2023-02-06 and 1.92 dated 2024-04-15
DESCRIPTION | 10 MD5 | 39 +-- NAMESPACE | 8 R/initiate_startValues.R |only R/methods.R | 337 +++++++++++++++++++++++++++ R/mmzipBvs.R |only man/initiate_startValues.Rd |only man/mBvs-package.Rd | 7 man/methods.Rd | 16 - man/mmzipBvs.Rd |only man/mzipBvs.Rd | 4 src/MBVSus.h | 77 +++--- src/MBVSus_Updates.c | 4 src/MMZIP.c |only src/MMZIP.h |only src/MMZIP_Updates.c |only src/Utilities.c | 496 ++++++++++++++++++++++++++++++++++++++++- src/mzipBVS_general.c | 3 src/mzipBVS_general.h | 6 src/mzipBVS_general_Updates.c | 171 +++++++------- src/mzip_restricted1.h | 213 ++++++++--------- src/mzip_restricted1_Updates.c | 162 ++++++------- src/mzip_restricted2.h | 233 +++++++++---------- src/mzip_restricted2_Updates.c | 165 ++++++------- 24 files changed, 1403 insertions(+), 548 deletions(-)
Title: An R Package for Factor Model Asset Pricing
Description: Functions for evaluating and testing asset pricing models, including
estimation and testing of factor risk premia, selection of "strong" risk
factors (factors having nonzero population correlation with test asset
returns), heteroskedasticity and autocorrelation robust covariance matrix
estimation and testing for model misspecification and identification.
The functions for estimating and testing factor risk
premia implement the Fama-MachBeth (1973) <doi:10.1086/260061> two-pass
approach, the misspecification-robust approaches of Kan-Robotti-Shanken (2013)
<doi:10.1111/jofi.12035>, and the approaches based on tradable factor risk
premia of Quaini-Trojani-Yuan (2023) <doi:10.2139/ssrn.4574683>. The
functions for selecting the "strong" risk factors are based on the Oracle
estimator of Quaini-Trojani-Yuan (2023) <doi:10.2139/ssrn.4574683> and the
factor screening procedure of Gospodinov-Kan-Robotti (2014) <doi:10.2139/ssrn.2579821>.
The functions for evaluating [...truncated...]
Author: Alberto Quaini [aut, cre, cph]
Maintainer: Alberto Quaini <alberto91quaini@gmail.com>
Diff between intrinsicFRP versions 2.0.1 dated 2024-01-08 and 2.1.0 dated 2024-04-15
DESCRIPTION | 12 +- MD5 | 52 +++++++----- NAMESPACE | 2 NEWS.md | 5 + R/RcppExports.R | 12 ++ R/data.R | 22 ++++- R/fgx_factors_test.R |only R/frp.R | 3 R/sdf_coefficients.R |only R/utils.R | 2 README.md | 143 ++++++++++++++++++++++++++++----- data/factors.rda |binary data/returns.rda |binary data/risk_free.rda |only man/FGXFactorsTest.Rd |only man/FRP.Rd | 3 man/SDFCoefficients.Rd |only man/factors.Rd | 4 man/returns.Rd | 4 man/risk_free.Rd |only src/RcppExports.cpp | 46 ++++++++++ src/fgx_three_pass_covariance.cpp |only src/fgx_three_pass_covariance.h |only src/frp.cpp | 114 ++++++++------------------ src/frp.h | 7 - src/gkr_factor_screening.cpp | 80 ------------------ src/gkr_factor_screening.h | 32 ------- src/sdf_coefficients.cpp |only src/sdf_coefficients.h |only tests/testthat/Rplots.pdf |binary tests/testthat/test-fgx_factors_test.R |only tests/testthat/test-frp.R | 10 ++ tests/testthat/test-sdf_coefficients.R |only 33 files changed, 303 insertions(+), 250 deletions(-)
Title: Tools for Choice Model Estimation and Application
Description: Choice models are a widely used technique across numerous scientific disciplines. The Apollo package is a very flexible tool for the estimation and application
of choice models in R. Users are able to write their own
model functions or use a mix of already available ones. Random heterogeneity,
both continuous and discrete and at the level of individuals and
choices, can be incorporated for all models. There is support for both standalone
models and hybrid model structures. Both classical
and Bayesian estimation is available, and multiple discrete
continuous models are covered in addition to discrete choice.
Multi-threading processing is supported for estimation and a large
number of pre and post-estimation routines, including for computing posterior
(individual-level) distributions are available.
For examples, a manual, and a support forum, visit
<http://www.ApolloChoiceModelling.com>. For more information on choice
models see Train, K. (2009) <isbn:978-0-521-74738-7> and [...truncated...]
Author: Stephane Hess [aut, cre],
David Palma [aut],
Thomas Hancock [ctb]
Maintainer: Stephane Hess <S.Hess@leeds.ac.uk>
Diff between apollo versions 0.3.1 dated 2023-10-12 and 0.3.2 dated 2024-04-15
DESCRIPTION | 10 MD5 | 30 - R/apollo_estimate.R | 7 R/apollo_initialise.R | 2 R/apollo_lcUnconditionals.R | 2 R/apollo_makeDraws.R | 8 R/apollo_mdcev.R | 3 R/apollo_prediction.R | 12 R/apollo_prepareProb.R | 2 R/apollo_saveOutput.R | 14 R/apollo_validateData.R | 3 R/apollo_varcov.R | 845 +++++++++++++++++++-------------------- build/vignette.rds |binary inst/doc/apollofirstexample.R | 2 inst/doc/apollofirstexample.html | 346 ++++++++------- man/apollo_saveOutput.Rd | 1 16 files changed, 651 insertions(+), 636 deletions(-)
Title: Consensus Pathway Analysis
Description: Provides a set of functions to perform pathway analysis and meta analysis from multiple gene expression datasets, as well as visualization of the results. The package is a wrapper of the following packages: Ritchie et al. (2015) <doi:10.1093/nar/gkv007>, Love et al. (2014) <doi:10.1186/s13059-014-0550-8>, Robinson et al. (2010) <doi:10.1093/bioinformatics/btp616>, Korotkevich et al. (2016) <arxiv:10.1101/060012>, Efron et al. (2015) <https://CRAN.R-project.org/package=GSA>, and Gu, Z. (2012) <https://CRAN.R-project.org/package=CePa>.
Author: Ha Nguyen [aut, cre],
Zeynab Maghsoudi [aut],
Phi Hung Bya [aut],
Tin Nguyen [fnd]
Maintainer: Ha Nguyen <hvn0006@auburn.edu>
Diff between RCPA versions 0.2.1 dated 2023-11-30 and 0.2.2 dated 2024-04-15
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/GEO-download.R | 2 +- R/annotation.R | 2 +- R/utils.R | 2 +- inst/doc/RCPA.html | 2 +- 6 files changed, 12 insertions(+), 12 deletions(-)
Title: Collection of Datasets for the USGS-INL Monitoring Networks
Description: A collection of analysis-ready datasets for the
U.S. Geological Survey - Idaho National Laboratory (USGS-INL)
groundwater and surface-water monitoring networks, administered by the
USGS-INL Project Office in cooperation with the U.S. Department of Energy.
The data collected from wells and surface-water stations at the
Idaho National Laboratory and surrounding areas have been used to describe
the effects of waste disposal on water contained in the
eastern Snake River Plain aquifer, located in the southeastern part of
Idaho, and the availability of water for long-term consumptive and
industrial use. The package includes long-term monitoring records dating
back to measurements from 1949. Geospatial data describing the areas from
which samples were collected or observations were made are also included in
the package. Bundling this data into a single package significantly reduces
the magnitude of data processing for researchers and provides a way to
distribute the data along with its docume [...truncated...]
Author: Jason C. Fisher [aut, cre] ,
Allison R. Trcka [aut] ,
Kerri C. Treinen [aut]
Maintainer: Jason C. Fisher <jfisher@usgs.gov>
Diff between inldata versions 1.1.4 dated 2024-02-06 and 1.1.5 dated 2024-04-15
inldata-1.1.4/inldata/R/mountains.R |only inldata-1.1.4/inldata/R/tabulate_parm_data.R |only inldata-1.1.4/inldata/R/tabulate_site_data.R |only inldata-1.1.4/inldata/data/mountains.rda |only inldata-1.1.4/inldata/man/mountains.Rd |only inldata-1.1.4/inldata/man/tabulate_parm_data.Rd |only inldata-1.1.4/inldata/man/tabulate_site_data.Rd |only inldata-1.1.5/inldata/DESCRIPTION | 21 inldata-1.1.5/inldata/MD5 | 161 ++-- inldata-1.1.5/inldata/NAMESPACE | 5 inldata-1.1.5/inldata/NEWS.md | 6 inldata-1.1.5/inldata/R/cities.R | 8 inldata-1.1.5/inldata/R/counties.R | 8 inldata-1.1.5/inldata/R/dem.R | 1 inldata-1.1.5/inldata/R/esrp.R | 1 inldata-1.1.5/inldata/R/facilities.R | 1 inldata-1.1.5/inldata/R/idaho.R | 5 inldata-1.1.5/inldata/R/inl.R | 1 inldata-1.1.5/inldata/R/iwd.R | 1 inldata-1.1.5/inldata/R/lakes.R | 1 inldata-1.1.5/inldata/R/make_data_release.R | 19 inldata-1.1.5/inldata/R/make_datasets.R | 331 +++++--- inldata-1.1.5/inldata/R/make_dm.R |only inldata-1.1.5/inldata/R/make_erd.R |only inldata-1.1.5/inldata/R/parameters.R | 10 inldata-1.1.5/inldata/R/percponds.R | 1 inldata-1.1.5/inldata/R/roads.R | 12 inldata-1.1.5/inldata/R/samples.R | 5 inldata-1.1.5/inldata/R/sites.R | 16 inldata-1.1.5/inldata/R/streams.R | 7 inldata-1.1.5/inldata/R/utils.R | 64 + inldata-1.1.5/inldata/R/write_datasets.R | 222 ++++- inldata-1.1.5/inldata/README.md | 92 +- inldata-1.1.5/inldata/build/inldata.pdf |binary inldata-1.1.5/inldata/build/stage23.rdb |binary inldata-1.1.5/inldata/data/background.rda |binary inldata-1.1.5/inldata/data/benchmarks.rda |binary inldata-1.1.5/inldata/data/cities.rda |binary inldata-1.1.5/inldata/data/counties.rda |binary inldata-1.1.5/inldata/data/crs.rda |binary inldata-1.1.5/inldata/data/dem.rda |binary inldata-1.1.5/inldata/data/dl.rda |binary inldata-1.1.5/inldata/data/esrp.rda |binary inldata-1.1.5/inldata/data/facilities.rda |binary inldata-1.1.5/inldata/data/gwl.rda |binary inldata-1.1.5/inldata/data/idaho.rda |binary inldata-1.1.5/inldata/data/inl.rda |binary inldata-1.1.5/inldata/data/iwd.rda |binary inldata-1.1.5/inldata/data/lakes.rda |binary inldata-1.1.5/inldata/data/parameters.rda |binary inldata-1.1.5/inldata/data/percponds.rda |binary inldata-1.1.5/inldata/data/roads.rda |binary inldata-1.1.5/inldata/data/samples.rda |binary inldata-1.1.5/inldata/data/sites.rda |binary inldata-1.1.5/inldata/data/streams.rda |binary inldata-1.1.5/inldata/data/swm.rda |binary inldata-1.1.5/inldata/data/units.rda |binary inldata-1.1.5/inldata/inst/CITATION | 4 inldata-1.1.5/inldata/inst/tinytest/test_functions.R | 2 inldata-1.1.5/inldata/man/check_package.Rd | 2 inldata-1.1.5/inldata/man/cities.Rd | 8 inldata-1.1.5/inldata/man/counties.Rd | 8 inldata-1.1.5/inldata/man/dem.Rd | 1 inldata-1.1.5/inldata/man/esrp.Rd | 1 inldata-1.1.5/inldata/man/facilities.Rd | 1 inldata-1.1.5/inldata/man/figures/erd.svg | 731 +++++++++---------- inldata-1.1.5/inldata/man/get_file_size.Rd |only inldata-1.1.5/inldata/man/idaho.Rd | 5 inldata-1.1.5/inldata/man/inl.Rd | 1 inldata-1.1.5/inldata/man/inldata-package.Rd | 4 inldata-1.1.5/inldata/man/iwd.Rd | 1 inldata-1.1.5/inldata/man/lakes.Rd | 1 inldata-1.1.5/inldata/man/make_data_release.Rd | 11 inldata-1.1.5/inldata/man/make_datasets.Rd | 13 inldata-1.1.5/inldata/man/make_dm.Rd |only inldata-1.1.5/inldata/man/make_erd.Rd |only inldata-1.1.5/inldata/man/parameters.Rd | 10 inldata-1.1.5/inldata/man/parse_station_nm.Rd | 2 inldata-1.1.5/inldata/man/paste_strings.Rd | 4 inldata-1.1.5/inldata/man/percponds.Rd | 1 inldata-1.1.5/inldata/man/rmd |only inldata-1.1.5/inldata/man/roads.Rd | 12 inldata-1.1.5/inldata/man/round_usgs.Rd | 2 inldata-1.1.5/inldata/man/samples.Rd | 5 inldata-1.1.5/inldata/man/sites.Rd | 16 inldata-1.1.5/inldata/man/streams.Rd | 7 inldata-1.1.5/inldata/man/trim_station_nm.Rd | 2 inldata-1.1.5/inldata/man/write_datasets.Rd | 33 88 files changed, 1080 insertions(+), 807 deletions(-)
Title: Access Formula 1 Data
Description: Obtain Formula 1 data via the 'Ergast API' <https://ergast.com/mrd/> and the unofficial API <https://www.formula1.com/en/f1-live.html> via the 'fastf1' 'Python' library <https://docs.fastf1.dev/>.
Author: Santiago Casanova [aut, cre, cph],
Philip Bulsink [aut]
Maintainer: Santiago Casanova <santiago.casanova@yahoo.com>
Diff between f1dataR versions 1.5.1 dated 2024-03-12 and 1.5.2 dated 2024-04-15
f1dataR-1.5.1/f1dataR/man/figures/Thumbs.db |only f1dataR-1.5.2/f1dataR/DESCRIPTION | 6 - f1dataR-1.5.2/f1dataR/MD5 | 48 +++++----- f1dataR-1.5.2/f1dataR/NEWS.md | 7 + f1dataR-1.5.2/f1dataR/R/utils.R | 2 f1dataR-1.5.2/f1dataR/build/vignette.rds |binary f1dataR-1.5.2/f1dataR/inst/doc/alonso-penalty-2024.Rmd |only f1dataR-1.5.2/f1dataR/inst/doc/alonso-penalty-2024.html |only f1dataR-1.5.2/f1dataR/inst/doc/plotting-turn-info.Rmd | 2 f1dataR-1.5.2/f1dataR/inst/doc/plotting-turn-info.html | 2 f1dataR-1.5.2/f1dataR/tests/testthat/setup.R | 19 +++ f1dataR-1.5.2/f1dataR/tests/testthat/test-load_circuits.R | 12 +- f1dataR-1.5.2/f1dataR/tests/testthat/test-load_constructors.R | 4 f1dataR-1.5.2/f1dataR/tests/testthat/test-load_drivers.R | 4 f1dataR-1.5.2/f1dataR/tests/testthat/test-load_laps.R | 4 f1dataR-1.5.2/f1dataR/tests/testthat/test-load_pitstops.R | 4 f1dataR-1.5.2/f1dataR/tests/testthat/test-load_quali.R | 4 f1dataR-1.5.2/f1dataR/tests/testthat/test-load_results.R | 4 f1dataR-1.5.2/f1dataR/tests/testthat/test-load_schedule.R | 4 f1dataR-1.5.2/f1dataR/tests/testthat/test-load_sprint.R | 4 f1dataR-1.5.2/f1dataR/tests/testthat/test-load_standings.R | 4 f1dataR-1.5.2/f1dataR/vignettes/alonso-penalty-2024.Rmd |only f1dataR-1.5.2/f1dataR/vignettes/alonso-penalty-2024.Rmd.orig |only f1dataR-1.5.2/f1dataR/vignettes/alonso-penalty-2024alo-plots-1.png |only f1dataR-1.5.2/f1dataR/vignettes/alonso-penalty-2024alo-throttle-1.png |only f1dataR-1.5.2/f1dataR/vignettes/alonso-penalty-2024rus-plots-1.png |only f1dataR-1.5.2/f1dataR/vignettes/plotting-turn-info.Rmd | 2 f1dataR-1.5.2/f1dataR/vignettes/plotting-turn-info.Rmd.orig | 2 f1dataR-1.5.2/f1dataR/vignettes/precompile.R | 3 29 files changed, 107 insertions(+), 34 deletions(-)
Title: API Wrapper for U.S. Energy Information Administration ('EIA')
Open Data
Description: Provides API access to data from the U.S. Energy Information Administration ('EIA') <https://www.eia.gov/>.
Use of the EIA's API and this package requires a free API key obtainable at <https://www.eia.gov/opendata/register.php>.
This package includes functions for searching the EIA data directory and returning time series and geoset time series datasets.
Datasets returned by these functions are provided by default in a tidy format, or alternatively, in more raw formats.
It also offers helper functions for working with EIA date strings and time formats and for inspecting different summaries of series metadata.
The package also provides control over API key storage and caching of API request results.
Author: Matthew Leonawicz [aut] ,
Matthew Hoff [aut, cre]
Maintainer: Matthew Hoff <matthew.g.hoff@gmail.com>
Diff between eia versions 0.4.1 dated 2023-11-17 and 0.4.2 dated 2024-04-15
eia-0.4.1/eia/man/eia_report.Rd |only eia-0.4.2/eia/DESCRIPTION | 26 +++--- eia-0.4.2/eia/MD5 | 21 ++-- eia-0.4.2/eia/NAMESPACE | 3 eia-0.4.2/eia/NEWS.md | 6 + eia-0.4.2/eia/R/data.R | 5 - eia-0.4.2/eia/R/eia.R | 3 eia-0.4.2/eia/R/reports.R | 120 ++++++++++++++-------------- eia-0.4.2/eia/inst/WORDLIST | 1 eia-0.4.2/eia/man/eia.Rd | 18 ++++ eia-0.4.2/eia/man/eia_data.Rd | 7 + eia-0.4.2/eia/tests/testthat/test-reports.R | 23 ++--- 12 files changed, 131 insertions(+), 102 deletions(-)
Title: Causal Decomposition of Group Disparities
Description: The framework of causal decomposition of group disparities developed by
Yu and Elwert (2023)
<doi:10.48550/arXiv.2306.16591>.
This package implements the decomposition estimators
that are based on efficient influence functions. For the
nuisance functions of the estimators, both parametric and
nonparametric options are provided, as well as manual options in case
the default models are not satisfying.
Author: Ang Yu [aut, cre, cph]
Maintainer: Ang Yu <ang_yu@outlook.com>
Diff between cdgd versions 0.3.4 dated 2024-01-08 and 0.3.5 dated 2024-04-15
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 6 +++++- R/cdgd0_ml.R | 7 +++++++ R/cdgd0_pa.R | 7 +++++++ R/cdgd1_ml.R | 7 +++++++ R/cdgd1_pa.R | 7 +++++++ 7 files changed, 43 insertions(+), 11 deletions(-)
Title: Angular Distance Weighting Interpolation
Description: The irregularly-spaced data are interpolated onto regular latitude-longitude grids by weighting each station according to its distance and angle from the center of a search radius. In addition to this, we also provide a simple way (Jones and Hulme, 1996) to grid the irregularly-spaced data points onto regular latitude-longitude grids by averaging all stations in grid-boxes.
Author: Panfeng Zhang [aut, cre] ,
Guoyu Ren [ctb],
Yun Qin [ctb],
Chenchen Ren [ctb],
Xiang Zheng [ctb]
Maintainer: Panfeng Zhang <zhangpanfeng@jlnu.edu.cn>
Diff between adw versions 0.3.1 dated 2023-05-22 and 0.4.0 dated 2024-04-15
adw-0.3.1/adw/R/data.R |only adw-0.3.1/adw/data |only adw-0.3.1/adw/man/adw_terra.Rd |only adw-0.3.1/adw/man/tavg.Rd |only adw-0.4.0/adw/DESCRIPTION | 17 -- adw-0.4.0/adw/MD5 | 36 ++-- adw-0.4.0/adw/NAMESPACE | 8 adw-0.4.0/adw/NEWS.md | 11 + adw-0.4.0/adw/R/adw.R | 259 ++++++++++++++++++++++++++++--- adw-0.4.0/adw/README.md | 138 ++++++++++++---- adw-0.4.0/adw/build/vignette.rds |binary adw-0.4.0/adw/inst/doc/Introduction.R | 48 ++++- adw-0.4.0/adw/inst/doc/Introduction.Rmd | 62 ++++++- adw-0.4.0/adw/inst/doc/Introduction.html | 139 ++++++++++------ adw-0.4.0/adw/man/adw.Rd | 16 - adw-0.4.0/adw/man/adw_sf.Rd | 5 adw-0.4.0/adw/man/adw_sv.Rd |only adw-0.4.0/adw/man/adw_vector.Rd | 7 adw-0.4.0/adw/man/awa.Rd |only adw-0.4.0/adw/man/points2grid.Rd |only adw-0.4.0/adw/man/points2grid_sf.Rd |only adw-0.4.0/adw/man/points2grid_sv.Rd |only adw-0.4.0/adw/man/points2grid_vector.Rd |only adw-0.4.0/adw/vignettes/Introduction.Rmd | 62 ++++++- 24 files changed, 630 insertions(+), 178 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') 'PostgreSQL' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'PostgreSQL' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcpostgresql versions 0.11.0 dated 2024-04-02 and 0.11.0.1 dated 2024-04-15
DESCRIPTION | 6 MD5 | 31 src/Makevars.ucrt | 1 src/c/vendor/fmt/include/fmt/args.h | 2 src/c/vendor/fmt/include/fmt/base.h |only src/c/vendor/fmt/include/fmt/chrono.h | 329 ++- src/c/vendor/fmt/include/fmt/color.h | 91 src/c/vendor/fmt/include/fmt/compile.h | 10 src/c/vendor/fmt/include/fmt/core.h | 2972 ------------------------------ src/c/vendor/fmt/include/fmt/format-inl.h | 255 ++ src/c/vendor/fmt/include/fmt/format.h | 1045 ++++------ src/c/vendor/fmt/include/fmt/os.h | 37 src/c/vendor/fmt/include/fmt/ostream.h | 48 src/c/vendor/fmt/include/fmt/printf.h | 184 - src/c/vendor/fmt/include/fmt/ranges.h | 257 +- src/c/vendor/fmt/include/fmt/std.h | 142 + src/c/vendor/fmt/include/fmt/xchar.h | 130 - 17 files changed, 1543 insertions(+), 3997 deletions(-)
More information about adbcpostgresql at CRAN
Permanent link
Title: R Interface to 'TensorFlow'
Description: Interface to 'TensorFlow' <https://www.tensorflow.org/>,
an open source software library for numerical computation using data
flow graphs. Nodes in the graph represent mathematical operations,
while the graph edges represent the multidimensional data arrays
(tensors) communicated between them. The flexible architecture allows
you to deploy computation to one or more 'CPUs' or 'GPUs' in a desktop,
server, or mobile device with a single 'API'. 'TensorFlow' was originally
developed by researchers and engineers working on the Google Brain Team
within Google's Machine Intelligence research organization for the
purposes of conducting machine learning and deep neural networks research,
but the system is general enough to be applicable in a wide variety
of other domains as well.
Author: JJ Allaire [aut, cph],
Tomasz Kalinowski [ctb, cph, cre],
Daniel Falbel [ctb, cph],
Dirk Eddelbuettel [ctb, cph],
Yuan Tang [aut, cph] ,
Nick Golding [ctb, cph],
Google Inc. [ctb, cph] ,
Posit, PBC [cph, fnd]
Maintainer: Tomasz Kalinowski <tomasz.kalinowski@posit.co>
Diff between tensorflow versions 2.15.0 dated 2024-01-31 and 2.16.0 dated 2024-04-15
DESCRIPTION | 8 +- MD5 | 24 ++++---- NAMESPACE | 5 + NEWS.md | 8 ++ R/estimator-generics.R | 9 +-- R/generics.R | 28 +++++++++ R/install.R | 135 ++++++++++++++++++++++++++++++++++++++++----- R/package.R | 5 + man/evaluate.Rd | 4 - man/export_savedmodel.Rd | 4 - man/install_tensorflow.Rd | 16 ++--- man/train_and_evaluate.Rd | 1 tests/testthat/test-seed.R | 4 - 13 files changed, 201 insertions(+), 50 deletions(-)
Title: The Uniform Manifold Approximation and Projection (UMAP) Method
for Dimensionality Reduction
Description: An implementation of the Uniform Manifold Approximation and
Projection dimensionality reduction by McInnes et al. (2018)
<doi:10.48550/arXiv.1802.03426>. It also provides means to transform new data and
to carry out supervised dimensionality reduction. An implementation of
the related LargeVis method of Tang et al. (2016) <doi:10.48550/arXiv.1602.00370>
is also provided. This is a complete re-implementation in R (and C++,
via the 'Rcpp' package): no Python installation is required. See the
uwot website (<https://github.com/jlmelville/uwot>) for more
documentation and examples.
Author: James Melville [aut, cre, cph],
Aaron Lun [ctb],
Mohamed Nadhir Djekidel [ctb],
Yuhan Hao [ctb],
Dirk Eddelbuettel [ctb]
Maintainer: James Melville <jlmelville@gmail.com>
Diff between uwot versions 0.1.16 dated 2023-06-29 and 0.2.1 dated 2024-04-15
DESCRIPTION | 52 - MD5 | 88 +- NAMESPACE | 1 NEWS.md | 56 + R/affinity.R | 62 - R/init.R | 65 - R/neighbors.R | 180 ++-- R/nn_hnsw.R |only R/nn_nndescent.R |only R/supervised.R | 15 R/transform.R | 265 +++--- R/umap2.R |only R/util.R | 30 R/uwot.R | 1428 +++++++++++++++++++++++++-------- build/partial.rdb |binary build/vignette.rds |only inst/doc |only inst/include/uwot/optimize.h | 43 inst/include/uwot/update.h | 25 man/figures |only man/lvish.Rd | 164 +++ man/optimize_graph_layout.Rd | 607 +++++++------- man/similarity_graph.Rd | 895 +++++++++++--------- man/simplicial_set_intersect.Rd | 94 +- man/simplicial_set_union.Rd | 80 - man/tumap.Rd | 242 +++++ man/umap.Rd | 143 +++ man/umap2.Rd |only man/unload_uwot.Rd | 124 +- src/r_uwot.cpp | 79 - tests/testthat/helper_data.R | 7 tests/testthat/helper_fuzzy_sets.R | 30 tests/testthat/test_errors.R | 37 tests/testthat/test_mixed_distances.R | 208 ++-- tests/testthat/test_neighbors.R | 623 +++++++++++++- tests/testthat/test_normlaplacian.R | 80 - tests/testthat/test_optonly.R | 79 + tests/testthat/test_output.R | 448 +++++----- tests/testthat/test_pca.R | 125 +- tests/testthat/test_perplexity.R | 20 tests/testthat/test_saveload.R | 232 +++++ tests/testthat/test_scale.R | 86 + tests/testthat/test_similarity_graph.R | 40 tests/testthat/test_smooth_knn_dists.R | 258 +++-- tests/testthat/test_supervised.R | 53 - tests/testthat/test_transform.R | 92 +- vignettes |only 47 files changed, 4865 insertions(+), 2291 deletions(-)
Title: Estimation of the Weights Attached to the Two-Way Fixed Effects
Regressions
Description: Estimates the weights and measure of robustness to treatment effect heterogeneity attached to two-way fixed effects regressions.
Clément de Chaisemartin, Xavier D'Haultfœuille (2020) <DOI: 10.1257/aer.20181169>.
Author: Diego Ciccia [aut, cre],
Felix Knau [aut],
Melitine Malezieux [aut],
Doulo Sow [aut],
Shuo Zhang [aut],
Clement de Chaisemartin [aut],
Grant McDermott [ctb]
Maintainer: Diego Ciccia <diego.ciccia@sciencespo.fr>
Diff between TwoWayFEWeights versions 2.0.1 dated 2024-04-02 and 2.0.2 dated 2024-04-15
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/print.R | 6 +++--- R/twowayfeweights.R | 2 ++ R/twowayfeweights_calculate.R | 12 +++++++----- R/twowayfeweights_normalize_var.R | 3 ++- R/twowayfeweights_result.R | 3 ++- 7 files changed, 25 insertions(+), 19 deletions(-)
More information about TwoWayFEWeights at CRAN
Permanent link
Title: Agnostic, Idiomatic Data Filter Module for Shiny
Description: When added to an existing shiny app, users may subset any
developer-chosen R data.frame on the fly. That is, users are empowered to
slice & dice data by applying multiple (order specific) filters using the
AND (&) operator between each, and getting real-time updates on the number
of rows effected/available along the way. Thus, any downstream processes
that leverage this data source (like tables, plots, or statistical procedures)
will re-render after new filters are applied. The shiny module’s user interface has
a 'minimalist' aesthetic so that the focus can be on the data &
other visuals. In addition to returning a reactive (filtered) data.frame,
'IDEAFilter' as also returns 'dplyr' filter statements used to actually slice
the data.
Author: Aaron Clark [aut, cre] ,
Jeff Thompson [aut],
Doug Kelkhoff [ctb, cph] ,
Maya Gans [ctb],
SortableJS contributors [ctb] ,
Biogen [cph]
Maintainer: Aaron Clark <clark.aaronchris@gmail.com>
Diff between IDEAFilter versions 0.1.2 dated 2022-06-28 and 0.2.0 dated 2024-04-15
IDEAFilter-0.1.2/IDEAFilter/inst/examples/iris_app/adsl.xpt |only IDEAFilter-0.2.0/IDEAFilter/DESCRIPTION | 39 ++-- IDEAFilter-0.2.0/IDEAFilter/LICENSE |only IDEAFilter-0.2.0/IDEAFilter/LICENSE.note |only IDEAFilter-0.2.0/IDEAFilter/MD5 | 88 ++++++---- IDEAFilter-0.2.0/IDEAFilter/NAMESPACE | 8 IDEAFilter-0.2.0/IDEAFilter/NEWS.md | 18 ++ IDEAFilter-0.2.0/IDEAFilter/R/IDEAFilter.R |only IDEAFilter-0.2.0/IDEAFilter/R/IDEAFilter_item.R |only IDEAFilter-0.2.0/IDEAFilter/R/selectInput_column.R | 9 - IDEAFilter-0.2.0/IDEAFilter/R/selectInput_proportion.R | 2 IDEAFilter-0.2.0/IDEAFilter/R/shiny_data_filter.R | 41 +++- IDEAFilter-0.2.0/IDEAFilter/R/shiny_data_filter_item.R | 8 IDEAFilter-0.2.0/IDEAFilter/R/shiny_vector_filter.R | 10 - IDEAFilter-0.2.0/IDEAFilter/R/shiny_vector_filter_NULL.R | 5 IDEAFilter-0.2.0/IDEAFilter/R/shiny_vector_filter_character.R | 18 +- IDEAFilter-0.2.0/IDEAFilter/R/shiny_vector_filter_date.R | 21 +- IDEAFilter-0.2.0/IDEAFilter/R/shiny_vector_filter_datetime.R | 51 +++-- IDEAFilter-0.2.0/IDEAFilter/R/shiny_vector_filter_factor_few.R | 38 ++-- IDEAFilter-0.2.0/IDEAFilter/R/shiny_vector_filter_factor_many.R | 21 +- IDEAFilter-0.2.0/IDEAFilter/R/shiny_vector_filter_logical.R | 23 +- IDEAFilter-0.2.0/IDEAFilter/R/shiny_vector_filter_numeric_few.R | 42 ++-- IDEAFilter-0.2.0/IDEAFilter/R/shiny_vector_filter_numeric_many.R | 41 +++- IDEAFilter-0.2.0/IDEAFilter/R/sysdata.rda |only IDEAFilter-0.2.0/IDEAFilter/R/utils.R | 9 + IDEAFilter-0.2.0/IDEAFilter/README.md | 68 +++++-- IDEAFilter-0.2.0/IDEAFilter/build |only IDEAFilter-0.2.0/IDEAFilter/inst/WORDLIST | 3 IDEAFilter-0.2.0/IDEAFilter/inst/doc |only IDEAFilter-0.2.0/IDEAFilter/inst/examples/iris_app/app.R | 12 - IDEAFilter-0.2.0/IDEAFilter/inst/examples/starwars_app/app.R | 40 +++- IDEAFilter-0.2.0/IDEAFilter/man/IDEAFilter.Rd |only IDEAFilter-0.2.0/IDEAFilter/man/IDEAFilter_item.Rd |only IDEAFilter-0.2.0/IDEAFilter/man/IDEAFilter_item_ui.Rd |only IDEAFilter-0.2.0/IDEAFilter/man/IDEAFilter_ui.Rd |only IDEAFilter-0.2.0/IDEAFilter/man/columnSelectInput.Rd | 3 IDEAFilter-0.2.0/IDEAFilter/man/figures/demo_ideafilter_button.png |only IDEAFilter-0.2.0/IDEAFilter/man/shiny_vector_filter_factor_few.Rd | 9 - IDEAFilter-0.2.0/IDEAFilter/man/shiny_vector_filter_factor_many.Rd | 9 - IDEAFilter-0.2.0/IDEAFilter/man/shiny_vector_filter_numeric_few.Rd | 9 - IDEAFilter-0.2.0/IDEAFilter/man/shiny_vector_filter_numeric_many.Rd | 9 - IDEAFilter-0.2.0/IDEAFilter/tests/shinytest/shinytest_IDEAFilter |only IDEAFilter-0.2.0/IDEAFilter/tests/shinytest/shinytest_IDEAFilter_item |only IDEAFilter-0.2.0/IDEAFilter/tests/shinytest/shinytest_data_types |only IDEAFilter-0.2.0/IDEAFilter/tests/shinytest/shinytest_preselection |only IDEAFilter-0.2.0/IDEAFilter/tests/shinytest/shinytest_reactive_data |only IDEAFilter-0.2.0/IDEAFilter/tests/spelling.R | 2 IDEAFilter-0.2.0/IDEAFilter/tests/testthat/test_IDEAFilter.R |only IDEAFilter-0.2.0/IDEAFilter/tests/testthat/test_IDEAFilter_item.R |only IDEAFilter-0.2.0/IDEAFilter/tests/testthat/test_preselection.R |only IDEAFilter-0.2.0/IDEAFilter/tests/testthat/test_reactive_data.R |only IDEAFilter-0.2.0/IDEAFilter/tests/testthat/test_shiny_data_filter.R | 8 IDEAFilter-0.2.0/IDEAFilter/tests/testthat/test_shiny_data_filter_item.R | 4 IDEAFilter-0.2.0/IDEAFilter/tests/testthat/test_shiny_vector_filter_numeric.R | 6 IDEAFilter-0.2.0/IDEAFilter/vignettes |only 55 files changed, 466 insertions(+), 208 deletions(-)
Title: Simplifies Exploratory Data Analysis
Description: Interactive data exploration with one line of code, automated
reporting or use an easy to remember set of tidy functions for low
code exploratory data analysis.
Author: Roland Krasser [aut, cre]
Maintainer: Roland Krasser <roland.krasser@gmail.com>
Diff between explore versions 1.2.0 dated 2024-02-28 and 1.3.0 dated 2024-04-15
explore-1.2.0/explore/inst/doc/explore_mtcars.R |only explore-1.2.0/explore/inst/doc/explore_mtcars.Rmd |only explore-1.2.0/explore/inst/doc/explore_mtcars.html |only explore-1.2.0/explore/inst/doc/explore_penguins.R |only explore-1.2.0/explore/inst/doc/explore_penguins.Rmd |only explore-1.2.0/explore/inst/doc/explore_penguins.html |only explore-1.2.0/explore/inst/doc/explore_titanic.R |only explore-1.2.0/explore/inst/doc/explore_titanic.Rmd |only explore-1.2.0/explore/inst/doc/explore_titanic.html |only explore-1.2.0/explore/vignettes/explore_mtcars.Rmd |only explore-1.2.0/explore/vignettes/explore_penguins.Rmd |only explore-1.2.0/explore/vignettes/explore_titanic.Rmd |only explore-1.3.0/explore/DESCRIPTION | 10 explore-1.3.0/explore/MD5 | 140 ++-- explore-1.3.0/explore/NAMESPACE | 3 explore-1.3.0/explore/NEWS.md | 30 - explore-1.3.0/explore/R/abtest.R | 66 +- explore-1.3.0/explore/R/create-data.R | 53 + explore-1.3.0/explore/R/explain-xgboost.R | 5 explore-1.3.0/explore/R/explain.R | 2 explore-1.3.0/explore/R/explore.R | 268 +++++++-- explore-1.3.0/explore/R/report.R | 9 explore-1.3.0/explore/R/tools.R | 124 ++++ explore-1.3.0/explore/README.md | 297 ++-------- explore-1.3.0/explore/build/vignette.rds |binary explore-1.3.0/explore/inst/doc/abtest.html | 8 explore-1.3.0/explore/inst/doc/clean-drop.html | 4 explore-1.3.0/explore/inst/doc/data.R | 4 explore-1.3.0/explore/inst/doc/data.Rmd | 7 explore-1.3.0/explore/inst/doc/data.html | 294 +++++---- explore-1.3.0/explore/inst/doc/describe.html | 4 explore-1.3.0/explore/inst/doc/explain.html | 4 explore-1.3.0/explore/inst/doc/explore-mtcars.R |only explore-1.3.0/explore/inst/doc/explore-mtcars.Rmd |only explore-1.3.0/explore/inst/doc/explore-mtcars.html |only explore-1.3.0/explore/inst/doc/explore-penguins.R |only explore-1.3.0/explore/inst/doc/explore-penguins.Rmd |only explore-1.3.0/explore/inst/doc/explore-penguins.html |only explore-1.3.0/explore/inst/doc/explore-titanic.R |only explore-1.3.0/explore/inst/doc/explore-titanic.Rmd |only explore-1.3.0/explore/inst/doc/explore-titanic.html |only explore-1.3.0/explore/inst/doc/explore.R | 14 explore-1.3.0/explore/inst/doc/explore.Rmd | 19 explore-1.3.0/explore/inst/doc/explore.html | 50 - explore-1.3.0/explore/inst/doc/predict.html | 6 explore-1.3.0/explore/inst/doc/report-target.html | 8 explore-1.3.0/explore/inst/doc/report-targetpct.html | 8 explore-1.3.0/explore/inst/doc/report.html | 6 explore-1.3.0/explore/inst/doc/tips-tricks.R | 17 explore-1.3.0/explore/inst/doc/tips-tricks.Rmd | 26 explore-1.3.0/explore/inst/doc/tips-tricks.html | 68 +- explore-1.3.0/explore/inst/extdata/template_report_target_pct.Rmd | 7 explore-1.3.0/explore/inst/extdata/template_report_target_split.Rmd | 9 explore-1.3.0/explore/inst/extdata/template_report_target_split_n.Rmd | 5 explore-1.3.0/explore/inst/extdata/template_report_variable.Rmd | 2 explore-1.3.0/explore/inst/extdata/template_report_variable_n.Rmd | 2 explore-1.3.0/explore/man/abtest.Rd | 4 explore-1.3.0/explore/man/abtest_targetnum.Rd | 4 explore-1.3.0/explore/man/abtest_targetpct.Rd | 5 explore-1.3.0/explore/man/create_data_abtest.Rd |only explore-1.3.0/explore/man/cut_vec_num_avg.Rd |only explore-1.3.0/explore/man/explain_forest.Rd | 6 explore-1.3.0/explore/man/explain_xgboost.Rd | 89 +- explore-1.3.0/explore/man/explore_all.Rd | 12 explore-1.3.0/explore/man/explore_bar.Rd | 3 explore-1.3.0/explore/man/explore_count.Rd | 3 explore-1.3.0/explore/man/explore_density.Rd | 2 explore-1.3.0/explore/man/explore_shiny.Rd | 4 explore-1.3.0/explore/man/figures/explore-beer-interact.png |only explore-1.3.0/explore/man/figures/explore-beer-plots.png |only explore-1.3.0/explore/man/figures/explore-beer-target.png |only explore-1.3.0/explore/man/figures/explore-beer-tree.png |only explore-1.3.0/explore/man/get_color.Rd |only explore-1.3.0/explore/man/interact.Rd |only explore-1.3.0/explore/man/mix_color.Rd | 50 - explore-1.3.0/explore/man/plot_text.Rd | 4 explore-1.3.0/explore/man/report.Rd | 4 explore-1.3.0/explore/man/target_explore_cat.Rd | 5 explore-1.3.0/explore/man/target_explore_num.Rd | 8 explore-1.3.0/explore/tests/testthat/test-create-data.R | 31 + explore-1.3.0/explore/tests/testthat/test-tools.R | 2 explore-1.3.0/explore/vignettes/data.Rmd | 7 explore-1.3.0/explore/vignettes/explore-mtcars.Rmd |only explore-1.3.0/explore/vignettes/explore-penguins.Rmd |only explore-1.3.0/explore/vignettes/explore-titanic.Rmd |only explore-1.3.0/explore/vignettes/explore.Rmd | 19 explore-1.3.0/explore/vignettes/tips-tricks.Rmd | 26 87 files changed, 1168 insertions(+), 699 deletions(-)
Title: Small Area Estimation for Continuous Zero Inflated Data
Description: Provides functionality to fit a zero-inflated estimator for small area estimation.
This estimator is a combines a linear mixed effects regression model and a logistic
mixed effects regression model via a two-stage modeling approach. The estimator's mean
squared error is estimated via a parametric bootstrap method. Chandra and others
(2012, <doi:10.1080/03610918.2011.598991>) introduce and describe this estimator and mean
squared error estimator. White and others (2024+, <doi:10.48550/arXiv.2402.03263>) describe the
applicability of this estimator to estimation of forest attributes and further assess the
estimator's properties.
Author: Josh Yamamoto [aut, cre],
Dinan Elsyad [aut],
Grayson White [aut],
Julian Schmitt [aut],
Niels Korsgaard [aut],
Kelly McConville [aut],
Kate Hu [aut]
Maintainer: Josh Yamamoto <joshuayamamoto5@gmail.com>
Diff between saeczi versions 0.1.2 dated 2024-03-28 and 0.1.3 dated 2024-04-15
DESCRIPTION | 8 +- MD5 | 13 ++- R/saeczi.R | 134 ++++++++++++++++++++--------------------- R/utils.R | 7 -- README.md | 52 +++++++++++---- man/saeczi.Rd | 4 - tests/testthat/test-boot_rep.R |only tests/testthat/test-saeczi.R | 4 + 8 files changed, 125 insertions(+), 97 deletions(-)
Title: Latent Interaction (and Moderation) Analysis in Structural
Equation Models (SEM)
Description: Estimation of interaction (i.e., moderation) effects between latent variables
in structural equation models (SEM).
The supported methods are:
The constrained approach (Algina & Moulder, 2001).
The unconstrained approach (Marsh et al., 2004).
The residual centering approach (Little et al., 2006).
The double centering approach (Lin et al., 2010).
The latent moderated structural equations (LMS) approach (Klein & Moosbrugger, 2000).
The quasi-maximum likelihood (QML) approach (Klein & Muthén, 2007) (temporarily unavailable)
The constrained- unconstrained, residual- and double centering- approaches
are estimated via 'lavaan' (Rosseel, 2012), whilst the LMS- and QML- approaches
are estimated via by ModSEM it self. Alternatively model can be
estimated via 'Mplus' (Muthén & Muthén, 1998-2017).
References:
Algina, J., & Moulder, B. C. (2001).
<doi:10.1207/S15328007SEM0801_3>.
"A note on estimating the Jöreskog-Yang model for latent variable interaction using 'LISREL' 8 [...truncated...]
Author: Kjell Solem Slupphaug [aut, cre]
Maintainer: Kjell Solem Slupphaug <slupphaugkjell@gmail.com>
Diff between modsem versions 0.1.0 dated 2024-03-23 and 0.1.1 dated 2024-04-15
modsem-0.1.0/modsem/R/nlsem.R |only modsem-0.1.0/modsem/R/package.R |only modsem-0.1.0/modsem/tests/testthat/testingNlsem.R |only modsem-0.1.1/modsem/DESCRIPTION | 21 - modsem-0.1.1/modsem/MD5 | 54 +++- modsem-0.1.1/modsem/NAMESPACE | 5 modsem-0.1.1/modsem/R/RcppExports.R | 28 ++ modsem-0.1.1/modsem/R/callLmsQml.R |only modsem-0.1.1/modsem/R/emLms.R |only modsem-0.1.1/modsem/R/equationsLms.R |only modsem-0.1.1/modsem/R/equationsQml.R |only modsem-0.1.1/modsem/R/estQml.R |only modsem-0.1.1/modsem/R/getModelSpecification.R | 122 +++------- modsem-0.1.1/modsem/R/modelLmsQml.R |only modsem-0.1.1/modsem/R/modsem-package.R |only modsem-0.1.1/modsem/R/modsem.R | 57 +++- modsem-0.1.1/modsem/R/optimizeLmsQml.R |only modsem-0.1.1/modsem/R/summaryLmsQml.R |only modsem-0.1.1/modsem/R/utils.R | 4 modsem-0.1.1/modsem/R/utilsLms.R |only modsem-0.1.1/modsem/R/utilsQml.R |only modsem-0.1.1/modsem/README.md | 78 +++++- modsem-0.1.1/modsem/build |only modsem-0.1.1/modsem/data/oneInt.rda |binary modsem-0.1.1/modsem/man/modsem-package.Rd |only modsem-0.1.1/modsem/man/modsem.Rd | 54 +++- modsem-0.1.1/modsem/src/LMS.h |only modsem-0.1.1/modsem/src/Makevars |only modsem-0.1.1/modsem/src/Makevars.win |only modsem-0.1.1/modsem/src/QML.cpp |only modsem-0.1.1/modsem/src/QML.h |only modsem-0.1.1/modsem/src/RcppExports.cpp | 93 +++++++ modsem-0.1.1/modsem/src/equationsLMS.cpp |only modsem-0.1.1/modsem/tests/testthat/mplusResults.inp | 2 modsem-0.1.1/modsem/tests/testthat/mplusResults.out | 88 +++---- modsem-0.1.1/modsem/tests/testthat/mplusResults_2f55eb38256759e6ebc9b0699ecf1d13.dat |only modsem-0.1.1/modsem/tests/testthat/mplusResults_9ae1075d88813d2b05dddbfb8fa37861.dat |only modsem-0.1.1/modsem/tests/testthat/mplusResults_e489e24f2bf1ad6c94963f7e17f04900.dat |only modsem-0.1.1/modsem/tests/testthat/mplusResults_e9480bee59c66cd9a48f4c25fe540f12.dat |only modsem-0.1.1/modsem/tests/testthat/testAutoInteractions.R | 3 modsem-0.1.1/modsem/tests/testthat/testQML.R |only modsem-0.1.1/modsem/tests/testthat/testingLMS.R |only 42 files changed, 416 insertions(+), 193 deletions(-)
Title: 'RStudio' Addins and 'Shiny' Modules for Medical Research
Description: 'RStudio' addins and 'Shiny' modules for descriptive statistics, regression and survival analysis.
Author: Jinseob Kim [aut, cre] ,
Zarathu [cph, fnd],
Hyunki Lee [aut],
Changwoo Lim [aut],
Jinhwan Kim [aut],
Yoonkyoung Jeon [aut],
Jaewoong Heo [aut]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jsmodule versions 1.5.2 dated 2024-03-27 and 1.5.3 dated 2024-04-15
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/bar.R | 13 +++++-------- R/box.R | 12 +++++------- R/line.R | 20 +++++++------------- inst/doc/jsmodule.html | 4 ++-- 7 files changed, 33 insertions(+), 40 deletions(-)
Title: Gaussian Processes for Estimating Causal Exposure Response
Curves
Description: Provides a non-parametric Bayesian framework based on Gaussian process priors for estimating causal effects of a continuous exposure and detecting change points in the causal exposure response curves using observational data. Ren, B., Wu, X., Braun, D., Pillai, N., & Dominici, F.(2021). "Bayesian modeling for exposure response curve via gaussian processes: Causal effects of exposure to air pollution on health outcomes." arXiv preprint <doi:10.48550/arXiv.2105.03454>.
Author: Naeem Khoshnevis [aut] ,
Boyu Ren [aut, cre] ,
Tanujit Dey [ctb] ,
Danielle Braun [aut]
Maintainer: Boyu Ren <bren@mgb.org>
Diff between GPCERF versions 0.2.3 dated 2024-03-02 and 0.2.4 dated 2024-04-15
DESCRIPTION | 21 MD5 | 202 +-- NAMESPACE | 60 - NEWS.md | 198 +-- R/RcppExports.R | 22 R/compute_deriv_nn.R | 216 ++-- R/compute_deriv_weights_gp.R | 134 +- R/compute_inverse.R | 68 - R/compute_m_sigma.R | 340 +++--- R/compute_posterior_m_nn.R | 182 +-- R/compute_posterior_sd_nn.R | 184 +-- R/compute_rl_deriv_gp.R | 156 +-- R/compute_rl_deriv_nn.R | 184 +-- R/compute_sd_gp.R | 138 +- R/compute_w_corr.R | 220 ++-- R/compute_weight_gp.R | 186 +-- R/estimate_cerf_gp.R | 590 +++++------ R/estimate_cerf_nngp.R | 576 +++++------ R/estimate_gps.R | 120 +- R/estimate_mean_sd_nn.R | 208 ++-- R/estimate_noise_gp.R | 50 R/estimate_noise_nn.R | 144 +- R/find_optimal_nn.R | 242 ++-- R/generate_synthetic_data.R | 214 ++-- R/gpcerf_package.R | 64 - R/plot.R | 466 ++++----- R/print.R | 206 ++-- R/set_logger.R | 166 +-- R/utils.R | 46 R/zzz.R | 36 README.md | 38 build/vignette.rds |binary inst/CITATION | 42 inst/doc/A-Note-on-Choosing-Hyperparameters.R | 12 inst/doc/A-Note-on-Choosing-Hyperparameters.Rmd | 62 - inst/doc/A-Note-on-Choosing-Hyperparameters.html | 834 ++++++++-------- inst/doc/Developers-Guide.R | 12 inst/doc/Developers-Guide.Rmd | 330 +++--- inst/doc/Developers-Guide.html | 1120 ++++++++++----------- inst/doc/GPCERF.R | 170 +-- inst/doc/GPCERF.Rmd | 336 +++--- inst/doc/GPCERF.html | 1133 +++++++++++----------- inst/doc/Nearest-neighbor-Gaussian-Processes.R | 212 ++-- inst/doc/Nearest-neighbor-Gaussian-Processes.Rmd | 282 ++--- inst/doc/Nearest-neighbor-Gaussian-Processes.html | 997 +++++++++---------- inst/doc/Standard-Gaussian-Processes.R | 204 +-- inst/doc/Standard-Gaussian-Processes.Rmd | 278 ++--- inst/doc/Standard-Gaussian-Processes.html | 980 +++++++++---------- man/GPCERF-package.Rd | 50 man/autoplot.cerf_gp.Rd | 40 man/autoplot.cerf_nngp.Rd | 40 man/compute_deriv_nn.Rd | 112 +- man/compute_deriv_weights_gp.Rd | 88 - man/compute_inverse.Rd | 36 man/compute_m_sigma.Rd | 124 +- man/compute_posterior_m_nn.Rd | 110 +- man/compute_posterior_sd_nn.Rd | 94 - man/compute_rl_deriv_gp.Rd | 128 +- man/compute_rl_deriv_nn.Rd | 154 +- man/compute_sd_gp.Rd | 104 +- man/compute_w_corr.Rd | 86 - man/compute_weight_gp.Rd | 122 +- man/estimate_cerf_gp.Rd | 224 ++-- man/estimate_cerf_nngp.Rd | 230 ++-- man/estimate_gps.Rd | 84 - man/estimate_mean_sd_nn.Rd | 116 +- man/estimate_noise_gp.Rd | 50 man/estimate_noise_nn.Rd | 80 - man/find_optimal_nn.Rd | 120 +- man/generate_synthetic_data.Rd | 74 - man/get_logger.Rd | 40 man/plot.cerf_gp.Rd | 40 man/plot.cerf_nngp.Rd | 40 man/print.cerf_gp.Rd | 38 man/print.cerf_nngp.Rd | 38 man/set_logger.Rd | 68 - man/summary.cerf_gp.Rd | 38 man/summary.cerf_nngp.Rd | 38 tests/testthat/test-compute_deriv_nn.R | 46 tests/testthat/test-compute_deriv_weights_gp.R | 36 tests/testthat/test-compute_inverse.R | 42 tests/testthat/test-compute_m_sigma.R | 90 - tests/testthat/test-compute_posterior_m_nn.R | 172 +-- tests/testthat/test-compute_posterior_sd_nn.R | 98 - tests/testthat/test-compute_rl_deriv_gp.R | 42 tests/testthat/test-compute_rl_deriv_nn.R | 44 tests/testthat/test-compute_sd_gp.R | 80 - tests/testthat/test-compute_w_corr.R | 62 - tests/testthat/test-compute_weight_gp.R | 100 - tests/testthat/test-estimate_cerf_gp.R | 404 +++---- tests/testthat/test-estimate_cerf_nngp.R | 236 ++-- tests/testthat/test-estimate_gps.R | 32 tests/testthat/test-estimate_mean_sd_nn.R | 76 - tests/testthat/test-estimate_noise_gp.R | 72 - tests/testthat/test-estimate_noise_nn.R | 82 - tests/testthat/test-find_optimal_nn.R | 84 - tests/testthat/test-generate_synthetic_data.R | 118 +- vignettes/A-Note-on-Choosing-Hyperparameters.Rmd | 62 - vignettes/Developers-Guide.Rmd | 330 +++--- vignettes/GPCERF.Rmd | 336 +++--- vignettes/Nearest-neighbor-Gaussian-Processes.Rmd | 282 ++--- vignettes/Standard-Gaussian-Processes.Rmd | 278 ++--- 102 files changed, 9263 insertions(+), 9228 deletions(-)
Title: Authoring Books and Technical Documents with R Markdown
Description: Output formats and utilities for authoring books and technical documents with R Markdown.
Author: Yihui Xie [aut, cre] ,
Christophe Dervieux [ctb] ,
JJ Allaire [ctb],
Albert Kim [ctb],
Alessandro Samuel-Rosa [ctb],
Andrzej Oles [ctb],
Atsushi Yasumoto [ctb] ,
Aust Frederik [ctb] ,
Bastiaan Quast [ctb],
Ben Marwick [ctb],
Chester Ismay [ctb],
Clif [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between bookdown versions 0.38 dated 2024-03-04 and 0.39 dated 2024-04-15
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- R/bs4_book.R | 2 +- R/html.R | 2 +- README.md | 2 +- build/vignette.rds |binary inst/resources/gitbook/css/plugin-highlight.css | 2 +- inst/rmarkdown/lua/custom-environment.lua | 2 +- inst/templates/default.html | 2 +- tests/testit/test-html.R | 2 +- tests/testit/test-utils.R | 4 ++-- 11 files changed, 23 insertions(+), 23 deletions(-)
Title: Convert Rd to 'Roxygen' Documentation
Description: Functions to convert Rd to 'roxygen' documentation. It can parse an
Rd file to a list, create the 'roxygen' documentation and update the original
R script (e.g. the one containing the definition of the function)
accordingly. This package also provides utilities that can help developers
build packages using 'roxygen' more easily. The 'formatR' package can be used
to reformat the R code in the examples sections so that the code will be
more readable.
Author: Hadley Wickham [aut],
Yihui Xie [aut, cre]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between Rd2roxygen versions 1.15 dated 2024-03-11 and 1.16 dated 2024-04-15
DESCRIPTION | 8 ++++---- MD5 | 16 +++++++++------- NEWS.md | 6 ++++++ R/rd2roxygen.R | 10 +++++++--- R/utils.R | 18 ++++++++++++------ build/vignette.rds |binary inst/doc/Rd2roxygen.html | 19 ++++++++++--------- inst/examples/pkgDemo/DESCRIPTION | 2 ++ inst/examples/pkgDemo/R/tests.R |only inst/examples/pkgDemo/man/testy.Rd |only 10 files changed, 50 insertions(+), 29 deletions(-)
Title: Meta-Analysis of Significance Values
Description: The canonical way to perform meta-analysis involves using effect sizes.
When they are not available this package provides a number of methods for
meta-analysis of significance values including the methods of Edgington, Fisher,
Lancaster, Stouffer, Tippett, and Wilkinson; a number of data-sets to replicate published results;
and routines for graphical display.
Author: Michael Dewey [aut, cre]
Maintainer: Michael Dewey <lists@dewey.myzen.co.uk>
Diff between metap versions 1.9 dated 2023-10-09 and 1.10 dated 2024-04-15
DESCRIPTION | 8 ++++---- MD5 | 41 +++++++++++++++++++++-------------------- NAMESPACE | 7 +++---- NEWS | 4 ++++ R/docontours.R | 9 +++++++++ build/metap.pdf |binary build/partial.rdb |binary build/stage23.rdb |binary build/vignette.rds |binary inst/doc/compare.pdf |binary inst/doc/metap.pdf |binary inst/doc/plotmetap.pdf |binary man/albatros.Rd | 17 +++-------------- man/dat.metap.Rd | 19 ++++++++++--------- man/invchisq.Rd | 2 +- man/invt.Rd | 2 +- man/logitp.Rd | 4 +--- man/meanz.Rd | 7 +++++-- man/metap-internal.Rd |only man/metap-package.Rd | 5 ----- man/sumz.Rd | 3 +-- man/truncated.Rd | 4 ++-- 22 files changed, 65 insertions(+), 67 deletions(-)
Title: Fit Multivariate Diversity-Interactions Models with Repeated
Measures
Description: An add-on package to 'DImodels' for the fitting of biodiversity and ecosystem function relationship study data with multiple ecosystem function responses and/or time points. This package uses the multivariate and repeated measures Diversity-Interactions (DI) methods developed by Kirwan et al. (2009) <doi:10.1890/08-1684.1>, Finn et al. (2013) <doi:10.1111/1365-2664.12041>, and Dooley et al. (2015) <doi:10.1111/ele.12504>.
Author: Laura Byrne [aut, cre] ,
Rishabh Vishwakarma [aut],
Rafael de Andrade Moral [aut],
Caroline Brophy [aut]
Maintainer: Laura Byrne <ByrneL54@tcd.ie>
Diff between DImodelsMulti versions 1.0.1 dated 2024-03-16 and 1.1.0 dated 2024-04-15
DESCRIPTION | 6 MD5 | 56 ++-- R/DImodelsMulti_HelpFile.R | 5 R/DImulti_fit.R | 102 ++++--- R/DImulti_fittingFuncs.R | 10 R/DImulti_vcov.R | 14 - inst/doc/DImulti_commonErrors.R | 13 inst/doc/DImulti_commonErrors.Rmd | 30 -- inst/doc/DImulti_commonErrors.html | 188 +++++++------ inst/doc/DImulti_onTheta.R | 21 - inst/doc/DImulti_onTheta.Rmd | 45 --- inst/doc/DImulti_onTheta.html | 76 +---- inst/doc/DImulti_prediction.R | 3 inst/doc/DImulti_prediction.Rmd | 3 inst/doc/DImulti_prediction.html | 227 ++++++++-------- inst/doc/DImulti_workflow.R | 20 - inst/doc/DImulti_workflow.Rmd | 26 + inst/doc/DImulti_workflow.html | 514 ++++++++++++++++++------------------- man/DImodelsMulti.Rd | 5 man/DImulti.Rd | 13 man/dataBEL.Rd | 4 man/dataSWE.Rd | 5 man/simMV.Rd | 4 man/simMVRM.Rd | 4 man/simRM.Rd | 5 vignettes/DImulti_commonErrors.Rmd | 30 -- vignettes/DImulti_onTheta.Rmd | 45 --- vignettes/DImulti_prediction.Rmd | 3 vignettes/DImulti_workflow.Rmd | 26 + 29 files changed, 704 insertions(+), 799 deletions(-)
Title: Create Validation Tests for Automated Content Analysis
Description: Intended to create standard human-in-the-loop validity tests for typical automated content analysis such as topic modeling and dictionary-based methods. This package offers a standard workflow with functions to prepare, administer and evaluate a human-in-the-loop validity test. This package provides functions for validating topic models using word intrusion, topic intrusion (Chang et al. 2009, <https://papers.nips.cc/paper/3700-reading-tea-leaves-how-humans-interpret-topic-models>) and word set intrusion (Ying et al. 2021) <doi:10.1017/pan.2021.33> tests. This package also provides functions for generating gold-standard data which are useful for validating dictionary-based methods. The default settings of all generated tests match those suggested in Chang et al. (2009) and Song et al. (2020) <doi:10.1080/10584609.2020.1723752>.
Author: Chung-hong Chan [aut, cre] ,
Marius Saeltzer [aut]
Maintainer: Chung-hong Chan <chainsawtiney@gmail.com>
Diff between oolong versions 0.6.0 dated 2024-02-10 and 0.6.1 dated 2024-04-15
DESCRIPTION | 6 ++--- MD5 | 22 ++++++++++---------- NEWS.md | 4 +++ build/vignette.rds |binary inst/doc/btm.R | 4 +-- inst/doc/btm.Rmd | 4 +-- inst/doc/btm.html | 6 ++--- inst/doc/overview.R | 8 ++++--- inst/doc/overview.Rmd | 8 ++++--- inst/doc/overview.html | 52 +++++++++++++++++++++++-------------------------- vignettes/btm.Rmd | 4 +-- vignettes/overview.Rmd | 8 ++++--- 12 files changed, 67 insertions(+), 59 deletions(-)
Title: Reporting Tables
Description: Reporting tables often have structure that goes beyond simple
rectangular data. The 'rtables' package provides a framework for
declaring complex multi-level tabulations and then applying them to
data. This framework models both tabulation and the resulting tables
as hierarchical, tree-like objects which support sibling sub-tables,
arbitrary splitting or grouping of data in row and column dimensions,
cells containing multiple values, and the concept of contextual
summary computations. A convenient pipe-able interface is provided for
declaring table layouts and the corresponding computations, and then
applying them to data.
Author: Gabriel Becker [aut] ,
Adrian Waddell [aut],
Daniel Sabanes Bove [ctb],
Maximilian Mordig [ctb],
Davide Garolini [ctb],
Emily de la Rua [ctb],
Abinaya Yogasekaram [ctb],
Joe Zhu [ctb, cre],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between rtables versions 0.6.6 dated 2023-12-08 and 0.6.7 dated 2024-04-15
rtables-0.6.6/rtables/R/deprecated.R |only rtables-0.6.6/rtables/man/figures/rtables-basics.png |only rtables-0.6.6/rtables/man/summarize_rows.Rd |only rtables-0.6.6/rtables/man/trim_zero_rows.Rd |only rtables-0.6.7/rtables/DESCRIPTION | 33 rtables-0.6.7/rtables/MD5 | 399 ++--- rtables-0.6.7/rtables/NAMESPACE | 4 rtables-0.6.7/rtables/NEWS.md | 69 rtables-0.6.7/rtables/R/00tabletrees.R | 263 +-- rtables-0.6.7/rtables/R/Viewer.R | 15 rtables-0.6.7/rtables/R/argument_conventions.R | 405 ++--- rtables-0.6.7/rtables/R/as_html.R | 39 rtables-0.6.7/rtables/R/colby_constructors.R | 636 +++------ rtables-0.6.7/rtables/R/compare_rtables.R | 44 rtables-0.6.7/rtables/R/format_rcell.R | 27 rtables-0.6.7/rtables/R/indent.R | 23 rtables-0.6.7/rtables/R/index_footnotes.R | 21 rtables-0.6.7/rtables/R/make_split_fun.R | 237 +-- rtables-0.6.7/rtables/R/make_subset_expr.R | 9 rtables-0.6.7/rtables/R/package.R |only rtables-0.6.7/rtables/R/simple_analysis.R | 29 rtables-0.6.7/rtables/R/split_funs.R | 276 +-- rtables-0.6.7/rtables/R/summary.R | 218 --- rtables-0.6.7/rtables/R/tree_accessors.R | 695 ++++++---- rtables-0.6.7/rtables/R/tt_afun_utils.R | 155 -- rtables-0.6.7/rtables/R/tt_compare_tables.R | 147 -- rtables-0.6.7/rtables/R/tt_compatibility.R | 169 +- rtables-0.6.7/rtables/R/tt_dotabulation.R | 212 +-- rtables-0.6.7/rtables/R/tt_export.R | 353 +++-- rtables-0.6.7/rtables/R/tt_from_df.R | 31 rtables-0.6.7/rtables/R/tt_paginate.R | 133 - rtables-0.6.7/rtables/R/tt_pos_and_access.R | 238 +-- rtables-0.6.7/rtables/R/tt_showmethods.R | 18 rtables-0.6.7/rtables/R/tt_sort.R | 146 +- rtables-0.6.7/rtables/R/tt_toString.R | 197 +- rtables-0.6.7/rtables/R/utils.R | 19 rtables-0.6.7/rtables/R/validate_table_struct.R | 93 - rtables-0.6.7/rtables/README.md | 59 rtables-0.6.7/rtables/build/vignette.rds |binary rtables-0.6.7/rtables/inst/WORDLIST | 72 - rtables-0.6.7/rtables/inst/doc/advanced_usage.R | 2 rtables-0.6.7/rtables/inst/doc/advanced_usage.html | 4 rtables-0.6.7/rtables/inst/doc/baseline.R | 4 rtables-0.6.7/rtables/inst/doc/baseline.html | 4 rtables-0.6.7/rtables/inst/doc/clinical_trials.R | 10 rtables-0.6.7/rtables/inst/doc/clinical_trials.html | 4 rtables-0.6.7/rtables/inst/doc/custom_appearance.R | 4 rtables-0.6.7/rtables/inst/doc/custom_appearance.Rmd | 18 rtables-0.6.7/rtables/inst/doc/custom_appearance.html | 14 rtables-0.6.7/rtables/inst/doc/example_analysis_coxreg.R | 2 rtables-0.6.7/rtables/inst/doc/example_analysis_coxreg.html | 4 rtables-0.6.7/rtables/inst/doc/exploratory_analysis.R | 6 rtables-0.6.7/rtables/inst/doc/exploratory_analysis.Rmd | 22 rtables-0.6.7/rtables/inst/doc/exploratory_analysis.html | 8 rtables-0.6.7/rtables/inst/doc/format_precedence.R | 4 rtables-0.6.7/rtables/inst/doc/format_precedence.html | 4 rtables-0.6.7/rtables/inst/doc/introduction.R | 8 rtables-0.6.7/rtables/inst/doc/introduction.Rmd | 20 rtables-0.6.7/rtables/inst/doc/introduction.html | 6 rtables-0.6.7/rtables/inst/doc/introspecting_tables.R | 10 rtables-0.6.7/rtables/inst/doc/introspecting_tables.Rmd | 14 rtables-0.6.7/rtables/inst/doc/introspecting_tables.html | 43 rtables-0.6.7/rtables/inst/doc/manual_table_construction.R | 4 rtables-0.6.7/rtables/inst/doc/manual_table_construction.html | 4 rtables-0.6.7/rtables/inst/doc/sorting_pruning.R | 4 rtables-0.6.7/rtables/inst/doc/sorting_pruning.html | 8 rtables-0.6.7/rtables/inst/doc/split_functions.R | 2 rtables-0.6.7/rtables/inst/doc/split_functions.html | 4 rtables-0.6.7/rtables/inst/doc/subsetting_tables.R | 4 rtables-0.6.7/rtables/inst/doc/subsetting_tables.html | 4 rtables-0.6.7/rtables/inst/doc/tabulation_concepts.R | 4 rtables-0.6.7/rtables/inst/doc/tabulation_dplyr.R | 4 rtables-0.6.7/rtables/inst/doc/tabulation_dplyr.html | 4 rtables-0.6.7/rtables/inst/doc/title_footer.R | 2 rtables-0.6.7/rtables/inst/doc/title_footer.html | 4 rtables-0.6.7/rtables/man/CellValue.Rd | 40 rtables-0.6.7/rtables/man/ManualSplit.Rd | 52 rtables-0.6.7/rtables/man/MultiVarSplit.Rd | 87 - rtables-0.6.7/rtables/man/VarLevelSplit.Rd | 104 - rtables-0.6.7/rtables/man/Viewer.Rd | 13 rtables-0.6.7/rtables/man/add_colcounts.Rd | 17 rtables-0.6.7/rtables/man/add_combo_facet.Rd | 25 rtables-0.6.7/rtables/man/add_combo_levels.Rd | 29 rtables-0.6.7/rtables/man/add_existing_table.Rd | 13 rtables-0.6.7/rtables/man/add_overall_col.Rd | 17 rtables-0.6.7/rtables/man/add_overall_level.Rd | 27 rtables-0.6.7/rtables/man/additional_fun_params.Rd | 78 - rtables-0.6.7/rtables/man/analyze.Rd | 117 - rtables-0.6.7/rtables/man/analyze_colvars.Rd | 59 rtables-0.6.7/rtables/man/append_topleft.Rd | 28 rtables-0.6.7/rtables/man/as_html.Rd | 32 rtables-0.6.7/rtables/man/asvec.Rd | 12 rtables-0.6.7/rtables/man/avarspl.Rd | 85 - rtables-0.6.7/rtables/man/basic_table.Rd | 86 - rtables-0.6.7/rtables/man/brackets.Rd | 60 rtables-0.6.7/rtables/man/build_table.Rd | 65 rtables-0.6.7/rtables/man/cbind_rtables.Rd | 11 rtables-0.6.7/rtables/man/cell_values.Rd | 36 rtables-0.6.7/rtables/man/cinfo.Rd | 28 rtables-0.6.7/rtables/man/clear_imods.Rd | 12 rtables-0.6.7/rtables/man/col_accessors.Rd | 16 rtables-0.6.7/rtables/man/collect_leaves.Rd | 13 rtables-0.6.7/rtables/man/compare_rtables.Rd | 22 rtables-0.6.7/rtables/man/compat_args.Rd | 30 rtables-0.6.7/rtables/man/constr_args.Rd | 119 - rtables-0.6.7/rtables/man/content_table.Rd | 12 rtables-0.6.7/rtables/man/counts_wpcts.Rd | 8 rtables-0.6.7/rtables/man/custom_split_funs.Rd | 62 rtables-0.6.7/rtables/man/cutsplits.Rd | 92 - rtables-0.6.7/rtables/man/data.frame_export.Rd | 55 rtables-0.6.7/rtables/man/df_to_tt.Rd | 18 rtables-0.6.7/rtables/man/dimensions.Rd | 8 rtables-0.6.7/rtables/man/do_base_split.Rd | 28 rtables-0.6.7/rtables/man/drop_facet_levels.Rd | 13 rtables-0.6.7/rtables/man/export_as_docx.Rd | 58 rtables-0.6.7/rtables/man/find_degen_struct.Rd | 23 rtables-0.6.7/rtables/man/format_rcell.Rd | 25 rtables-0.6.7/rtables/man/formatters_methods.Rd | 77 - rtables-0.6.7/rtables/man/gen_args.Rd | 99 - rtables-0.6.7/rtables/man/gfc.Rd | 14 rtables-0.6.7/rtables/man/head_tail.Rd | 14 rtables-0.6.7/rtables/man/horizontal_sep.Rd | 12 rtables-0.6.7/rtables/man/in_rows.Rd | 33 rtables-0.6.7/rtables/man/indent.Rd | 6 rtables-0.6.7/rtables/man/indent_string.Rd | 12 rtables-0.6.7/rtables/man/insert_row_at_path.Rd | 24 rtables-0.6.7/rtables/man/insert_rrow.Rd | 23 rtables-0.6.7/rtables/man/int_methods.Rd | 159 -- rtables-0.6.7/rtables/man/is_rtable.Rd | 5 rtables-0.6.7/rtables/man/label_at_path.Rd | 35 rtables-0.6.7/rtables/man/length-CellValue-method.Rd | 4 rtables-0.6.7/rtables/man/list_wrap.Rd | 23 rtables-0.6.7/rtables/man/lyt_args.Rd | 186 +- rtables-0.6.7/rtables/man/make_afun.Rd | 58 rtables-0.6.7/rtables/man/make_col_df.Rd | 17 rtables-0.6.7/rtables/man/make_col_row_df.Rd | 11 rtables-0.6.7/rtables/man/make_split_fun.Rd | 111 - rtables-0.6.7/rtables/man/make_split_result.Rd | 31 rtables-0.6.7/rtables/man/manual_cols.Rd | 12 rtables-0.6.7/rtables/man/matrix_form-VTableTree-method.Rd | 44 rtables-0.6.7/rtables/man/names.Rd | 4 rtables-0.6.7/rtables/man/no_info.Rd | 7 rtables-0.6.7/rtables/man/paginate.Rd | 164 +- rtables-0.6.7/rtables/man/prune_table.Rd | 19 rtables-0.6.7/rtables/man/qtable_layout.Rd | 99 - rtables-0.6.7/rtables/man/rbind.Rd | 21 rtables-0.6.7/rtables/man/rcell.Rd | 53 rtables-0.6.7/rtables/man/ref_fnotes.Rd | 23 rtables-0.6.7/rtables/man/rheader.Rd | 25 rtables-0.6.7/rtables/man/row_accessors.Rd | 6 rtables-0.6.7/rtables/man/row_paths_summary.Rd | 14 rtables-0.6.7/rtables/man/rowclasses.Rd | 60 rtables-0.6.7/rtables/man/rrow.Rd | 25 rtables-0.6.7/rtables/man/rrowl.Rd | 25 rtables-0.6.7/rtables/man/rtable.Rd | 48 rtables-0.6.7/rtables/man/rtables-package.Rd |only rtables-0.6.7/rtables/man/rtinner.Rd | 21 rtables-0.6.7/rtables/man/sanitize_table_struct.Rd | 32 rtables-0.6.7/rtables/man/score_funs.Rd | 13 rtables-0.6.7/rtables/man/section_div.Rd | 23 rtables-0.6.7/rtables/man/sf_args.Rd | 16 rtables-0.6.7/rtables/man/sort_at_path.Rd | 113 - rtables-0.6.7/rtables/man/spl_context.Rd | 74 - rtables-0.6.7/rtables/man/spl_context_to_disp_path.Rd | 9 rtables-0.6.7/rtables/man/spl_variable.Rd | 18 rtables-0.6.7/rtables/man/split_cols_by.Rd | 101 - rtables-0.6.7/rtables/man/split_cols_by_multivar.Rd | 42 rtables-0.6.7/rtables/man/split_funcs.Rd | 98 - rtables-0.6.7/rtables/man/split_rows_by.Rd | 152 -- rtables-0.6.7/rtables/man/split_rows_by_multivar.Rd | 63 rtables-0.6.7/rtables/man/summarize_row_groups.Rd | 75 - rtables-0.6.7/rtables/man/tabclasses.Rd | 105 - rtables-0.6.7/rtables/man/table_shell.Rd | 54 rtables-0.6.7/rtables/man/table_structure.Rd | 12 rtables-0.6.7/rtables/man/top_left.Rd | 16 rtables-0.6.7/rtables/man/tostring.Rd | 71 - rtables-0.6.7/rtables/man/tree_children.Rd | 10 rtables-0.6.7/rtables/man/trim_levels_in_facets.Rd | 12 rtables-0.6.7/rtables/man/trim_levels_to_map.Rd | 27 rtables-0.6.7/rtables/man/trim_prune_funs.Rd | 82 - rtables-0.6.7/rtables/man/trim_rows.Rd | 25 rtables-0.6.7/rtables/man/tsv_io.Rd | 39 rtables-0.6.7/rtables/man/tt_to_flextable.Rd | 96 - rtables-0.6.7/rtables/man/ttap.Rd | 18 rtables-0.6.7/rtables/man/update_ref_indexing.Rd | 17 rtables-0.6.7/rtables/man/validate_table_struct.Rd | 51 rtables-0.6.7/rtables/man/value_formats.Rd | 18 rtables-0.6.7/rtables/man/varcuts.Rd | 87 - rtables-0.6.7/rtables/man/vil.Rd | 34 rtables-0.6.7/rtables/tests/testthat/setup-fakedata.R | 13 rtables-0.6.7/rtables/tests/testthat/setup-options.R |only rtables-0.6.7/rtables/tests/testthat/test-accessors.R | 27 rtables-0.6.7/rtables/tests/testthat/test-deprecated.R | 7 rtables-0.6.7/rtables/tests/testthat/test-indent-mod.R | 6 rtables-0.6.7/rtables/tests/testthat/test-lyt-tabulation.R | 2 rtables-0.6.7/rtables/tests/testthat/test-matrix_form.R |only rtables-0.6.7/rtables/tests/testthat/test-pagination.R | 8 rtables-0.6.7/rtables/tests/testthat/test-printing.R | 63 rtables-0.6.7/rtables/tests/testthat/test-result_data_frame.R | 129 + rtables-0.6.7/rtables/tests/testthat/test-sort-prune.R | 58 rtables-0.6.7/rtables/vignettes/custom_appearance.Rmd | 18 rtables-0.6.7/rtables/vignettes/exploratory_analysis.Rmd | 22 rtables-0.6.7/rtables/vignettes/images |only rtables-0.6.7/rtables/vignettes/introduction.Rmd | 20 rtables-0.6.7/rtables/vignettes/introspecting_tables.Rmd | 14 205 files changed, 5203 insertions(+), 5897 deletions(-)
Title: Clinical Trial Style Data Readout Listings
Description: Listings are often part of the submission of clinical trial
data in regulatory settings. We provide a framework for the specific
formatting features often used when displaying large datasets in that
context.
Author: Gabriel Becker [aut] ,
Adrian Waddell [aut],
Joe Zhu [aut, cre],
Davide Garolini [ctb],
Emily de la Rua [ctb],
Abinaya Yogasekaram [ctb],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between rlistings versions 0.2.7 dated 2023-12-06 and 0.2.8 dated 2024-04-15
rlistings-0.2.7/rlistings/man/defunct.Rd |only rlistings-0.2.8/rlistings/DESCRIPTION | 23 rlistings-0.2.8/rlistings/MD5 | 81 rlistings-0.2.8/rlistings/NAMESPACE | 2 rlistings-0.2.8/rlistings/NEWS.md | 28 rlistings-0.2.8/rlistings/R/listing_export.R | 5 rlistings-0.2.8/rlistings/R/paginate_listing.R | 94 rlistings-0.2.8/rlistings/R/rlistings.R | 190 - rlistings-0.2.8/rlistings/R/rlistings_methods.R | 76 rlistings-0.2.8/rlistings/build/vignette.rds |binary rlistings-0.2.8/rlistings/inst/WORDLIST | 6 rlistings-0.2.8/rlistings/inst/cheatsheet |only rlistings-0.2.8/rlistings/inst/doc/col_formatting.R | 4 rlistings-0.2.8/rlistings/inst/doc/col_formatting.html | 4 rlistings-0.2.8/rlistings/inst/doc/pagination.R | 34 rlistings-0.2.8/rlistings/inst/doc/pagination.Rmd | 43 rlistings-0.2.8/rlistings/inst/doc/pagination.html | 1371 ++++------ rlistings-0.2.8/rlistings/inst/doc/ref_footnotes.R | 4 rlistings-0.2.8/rlistings/inst/doc/ref_footnotes.html | 434 +-- rlistings-0.2.8/rlistings/inst/doc/rlistings.R | 2 rlistings-0.2.8/rlistings/inst/doc/rlistings.Rmd | 8 rlistings-0.2.8/rlistings/inst/doc/rlistings.html | 100 rlistings-0.2.8/rlistings/man/listing_methods.Rd | 43 rlistings-0.2.8/rlistings/man/listings.Rd | 89 rlistings-0.2.8/rlistings/man/make_row_df-listing_df-method.Rd | 33 rlistings-0.2.8/rlistings/man/matrix_form-listing_df-method.Rd | 21 rlistings-0.2.8/rlistings/man/paginate.Rd | 89 rlistings-0.2.8/rlistings/man/reexports.Rd | 3 rlistings-0.2.8/rlistings/man/rlistings-package.Rd | 3 rlistings-0.2.8/rlistings/man/split_into_pages_by_var.Rd |only rlistings-0.2.8/rlistings/man/vec_nlines.Rd | 16 rlistings-0.2.8/rlistings/tests/testthat/_snaps/export.md | 160 + rlistings-0.2.8/rlistings/tests/testthat/_snaps/paginate_listing.md | 137 rlistings-0.2.8/rlistings/tests/testthat/_snaps/print.md | 42 rlistings-0.2.8/rlistings/tests/testthat/setup-options.R |only rlistings-0.2.8/rlistings/tests/testthat/setup.R | 8 rlistings-0.2.8/rlistings/tests/testthat/test-export.R | 46 rlistings-0.2.8/rlistings/tests/testthat/test-listings.R | 44 rlistings-0.2.8/rlistings/tests/testthat/test-matrix_form.R |only rlistings-0.2.8/rlistings/tests/testthat/test-paginate_listing.R | 191 + rlistings-0.2.8/rlistings/tests/testthat/test-print.R | 8 rlistings-0.2.8/rlistings/vignettes/pagination.Rmd | 43 rlistings-0.2.8/rlistings/vignettes/rlistings.Rmd | 8 43 files changed, 1939 insertions(+), 1554 deletions(-)
Title: Create Tidy Data Frames of Marginal Effects for 'ggplot' from
Model Outputs
Description: Compute marginal effects and adjusted predictions from statistical
models and returns the result as tidy data frames. These data frames are
ready to use with the 'ggplot2'-package. Effects and predictions can be
calculated for many different models. Interaction terms, splines and
polynomial terms are also supported. The main functions are ggpredict(),
ggemmeans() and ggeffect(). There is a generic plot()-method to plot the
results using 'ggplot2'.
Author: Daniel Luedecke [aut, cre] ,
Frederik Aust [ctb] ,
Sam Crawley [ctb] ,
Mattan S. Ben-Shachar [ctb] ,
Sean C. Anderson [ctb]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between ggeffects versions 1.5.1 dated 2024-03-26 and 1.5.2 dated 2024-04-15
DESCRIPTION | 13 MD5 | 91 + NEWS.md | 25 R/coffee_data.R |only R/efc.R | 5 R/emmeans_prediction_data.R | 14 R/fish.R | 4 R/ggaverage.R | 23 R/ggeffect.R | 3 R/ggemmeans.R | 29 R/ggemmeans_zi_predictions.R | 13 R/ggpredict.R | 13 R/install_latest.R | 2 R/post_processing_labels.R | 2 R/predict_response.R | 10 R/predict_zero_inflation.R | 17 R/test_predictions.R | 440 ++++++--- R/test_predictions_emmeans.R |only R/utils.R | 13 R/utils_get_data_grid.R | 23 R/utils_get_representative_values.R | 2 R/utils_set_attr.R | 5 README.md | 14 data/coffee_data.rda |only inst/doc/content.html | 4 man/coffee_data.Rd |only man/efc.Rd | 5 man/figures/unnamed-chunk-6-1.png |binary man/fish.Rd | 4 man/ggpredict.Rd | 10 man/predict_response.Rd | 10 man/test_predictions.Rd | 40 tests/testthat/_snaps/polr.md | 260 ++--- tests/testthat/_snaps/print_test_predictions-ordinal.md | 278 ++--- tests/testthat/_snaps/print_test_predictions.md | 774 ++++++++-------- tests/testthat/_snaps/test_predictions-margin.md |only tests/testthat/_snaps/test_predictions-mixed.md |only tests/testthat/_snaps/test_predictions_emmeans.md |only tests/testthat/test-avg_predictions.R | 2 tests/testthat/test-brms-categ-cum.R | 16 tests/testthat/test-ggeffect.R |only tests/testthat/test-glmmTMB.R | 32 tests/testthat/test-interval_re.R | 4 tests/testthat/test-johnson_neyman.R | 10 tests/testthat/test-lmer.R | 7 tests/testthat/test-prediction_interval.R | 1 tests/testthat/test-rstanarm.R | 2 tests/testthat/test-test_predictions-margin.R |only tests/testthat/test-test_predictions-mixed.R |only tests/testthat/test-test_predictions.R | 12 tests/testthat/test-test_predictions_emmeans.R |only tests/testthat/test-zi_prob.R | 72 + 52 files changed, 1363 insertions(+), 941 deletions(-)
Title: Tidy Verbs for Fast Data Manipulation
Description: A toolkit of tidy data manipulation verbs with 'data.table' as the backend.
Combining the merits of syntax elegance from 'dplyr' and computing performance from 'data.table',
'tidyfst' intends to provide users with state-of-the-art data manipulation tools with least pain.
This package is an extension of 'data.table'. While enjoying a tidy syntax,
it also wraps combinations of efficient functions to facilitate frequently-used data operations.
Author: Tian-Yuan Huang [aut, cre]
Maintainer: Tian-Yuan Huang <huang.tian-yuan@qq.com>
Diff between tidyfst versions 1.7.7 dated 2023-07-17 and 1.7.8 dated 2024-04-15
DESCRIPTION | 8 MD5 | 58 NAMESPACE | 27 R/sample.R | 2 R/summarise_dt.R | 2 build/vignette.rds |binary inst/doc/benchmark.R | 4 inst/doc/benchmark.Rmd | 2 inst/doc/benchmark.html | 472 ++++--- inst/doc/chinese_tutorial.R | 2 inst/doc/chinese_tutorial.html | 674 +++++------ inst/doc/english_tutorial.R | 2 inst/doc/english_tutorial.html | 2426 ++++++++++++++++++++--------------------- inst/doc/example1_intro.R | 2 inst/doc/example1_intro.html | 388 +++--- inst/doc/example2_join.R | 2 inst/doc/example2_join.html | 413 +++--- inst/doc/example3_reshape.R | 2 inst/doc/example3_reshape.html | 430 +++---- inst/doc/example4_nest.R | 2 inst/doc/example4_nest.html | 152 +- inst/doc/example5_fst.R | 2 inst/doc/example5_fst.html | 72 - inst/doc/example6_dt.R | 2 inst/doc/example6_dt.html | 32 man/sample.Rd | 2 man/summarise_dt.Rd | 2 tests/testthat/test-count_dt.R | 2 tests/testthat/test-group_dt.R | 2 vignettes/benchmark.Rmd | 2 30 files changed, 2610 insertions(+), 2578 deletions(-)
Title: Interface to 'Python'
Description: Interface to 'Python' modules, classes, and functions. When calling
into 'Python', R data types are automatically converted to their equivalent 'Python'
types. When values are returned from 'Python' to R they are converted back to R
types. Compatible with all versions of 'Python' >= 2.7.
Author: Tomasz Kalinowski [ctb, cre],
Kevin Ushey [aut],
JJ Allaire [aut],
RStudio [cph, fnd],
Yuan Tang [aut, cph] ,
Dirk Eddelbuettel [ctb, cph],
Bryan Lewis [ctb, cph],
Sigrid Keydana [ctb],
Ryan Hafen [ctb, cph],
Marcus Geelnard [ctb, cph]
Maintainer: Tomasz Kalinowski <tomasz@posit.co>
Diff between reticulate versions 1.35.0 dated 2024-01-31 and 1.36.0 dated 2024-04-15
DESCRIPTION | 6 MD5 | 136 +- NAMESPACE | 8 NEWS.md | 97 + R/RcppExports.R | 131 ++ R/array.R | 3 R/class.R | 52 - R/conda.R | 28 R/config.R | 20 R/conversion.R | 180 +-- R/generator.R | 8 R/help.R | 6 R/import.R | 17 R/install-python.R | 22 R/knitr-engine.R | 52 - R/miniconda.R | 6 R/package.R | 34 R/pyenv.R | 14 R/python-dict.R | 23 R/python-item.R | 42 R/python-tools.R | 6 R/python.R | 397 ++------ R/source.R | 8 R/utils.R | 15 R/virtualenv.R | 2 build/vignette.rds |binary inst/config/config.py | 62 - inst/doc/package.Rmd | 2 inst/doc/package.html | 2 inst/doc/python_primer.html | 28 inst/doc/versions.Rmd | 5 inst/doc/versions.html | 9 inst/python/rpytools/generator.py | 6 inst/python/rpytools/help.py | 198 ++-- inst/python/rpytools/loader.py | 184 +-- inst/python/rpytools/output.py | 299 ++---- inst/python/rpytools/signals.py | 40 inst/python/rpytools/test.py | 129 +- inst/python/rpytools/thread.py | 35 man/conda-tools.Rd | 2 man/import.Rd | 8 man/install_python.Rd | 22 man/is_py_object.Rd |only man/iterate.Rd | 14 man/py_del_attr.Rd | 2 man/py_discover_config.Rd | 4 man/py_get_attr.Rd | 2 man/py_get_item.Rd | 8 man/py_has_attr.Rd | 2 man/py_last_error.Rd | 14 man/py_set_attr.Rd | 2 src/RcppExports.cpp | 253 +++-- src/libpython.cpp | 18 src/libpython.h | 1 src/python.cpp | 1627 ++++++++++++++++++++------------- src/reticulate_types.h | 136 ++ tests/testthat/resources/_snaps |only tests/testthat/script.py | 14 tests/testthat/test-delay-load.R | 12 tests/testthat/test-python-arrays.R | 71 + tests/testthat/test-python-classes.R | 2 tests/testthat/test-python-datetime.R | 2 tests/testthat/test-python-dict.R | 46 tests/testthat/test-python-iterators.R | 57 + tests/testthat/test-python-objects.R | 46 tests/testthat/test-python-output.R | 78 + tests/testthat/test-python-pandas.R | 106 ++ tests/testthat/test-python-source.R | 10 vignettes/package.Rmd | 2 vignettes/versions.Rmd | 5 70 files changed, 2976 insertions(+), 1902 deletions(-)
Title: ASCII Formatting for Values and Tables
Description: We provide a framework for rendering complex tables to ASCII,
and a set of formatters for transforming values or sets of values into
ASCII-ready display strings.
Author: Gabriel Becker [aut] ,
Adrian Waddell [aut],
Davide Garolini [ctb],
Emily de la Rua [ctb],
Abinaya Yogasekaram [ctb],
Joe Zhu [ctb, cre],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between formatters versions 0.5.5 dated 2023-12-06 and 0.5.6 dated 2024-04-15
formatters-0.5.5/formatters/man/basic_matrix_form.Rd |only formatters-0.5.6/formatters/DESCRIPTION | 23 formatters-0.5.6/formatters/MD5 | 161 +- formatters-0.5.6/formatters/NAMESPACE | 4 formatters-0.5.6/formatters/NEWS.md | 19 formatters-0.5.6/formatters/R/data.R | 10 formatters-0.5.6/formatters/R/format_value.R | 147 - formatters-0.5.6/formatters/R/generics.R | 373 ++-- formatters-0.5.6/formatters/R/labels.R | 79 - formatters-0.5.6/formatters/R/matrix_form.R | 704 ++++++--- formatters-0.5.6/formatters/R/mpf_exporters.R | 290 ++- formatters-0.5.6/formatters/R/page_size.R | 79 - formatters-0.5.6/formatters/R/pagination.R | 750 ++++++---- formatters-0.5.6/formatters/R/tostring.R | 370 ++-- formatters-0.5.6/formatters/R/utils.R | 16 formatters-0.5.6/formatters/R/zzz.R |only formatters-0.5.6/formatters/README.md | 25 formatters-0.5.6/formatters/build/vignette.rds |binary formatters-0.5.6/formatters/inst/WORDLIST | 15 formatters-0.5.6/formatters/inst/doc/formatters.R | 4 formatters-0.5.6/formatters/inst/doc/formatters.Rmd | 2 formatters-0.5.6/formatters/inst/doc/formatters.html | 9 formatters-0.5.6/formatters/man/DM.Rd | 6 formatters-0.5.6/formatters/man/MatrixPrintForm.Rd | 189 +- formatters-0.5.6/formatters/man/MatrixPrintForm_class.Rd | 4 formatters-0.5.6/formatters/man/basemethods.Rd | 2 formatters-0.5.6/formatters/man/basic_pagdf.Rd | 30 formatters-0.5.6/formatters/man/cdisc_data.Rd | 6 formatters-0.5.6/formatters/man/check_formats.Rd | 15 formatters-0.5.6/formatters/man/decimal_align.Rd | 26 formatters-0.5.6/formatters/man/default_horizontal_sep.Rd | 19 formatters-0.5.6/formatters/man/default_page_number.Rd |only formatters-0.5.6/formatters/man/divider_height.Rd | 11 formatters-0.5.6/formatters/man/do_forced_paginate.Rd | 19 formatters-0.5.6/formatters/man/export_as_pdf.Rd | 112 - formatters-0.5.6/formatters/man/export_as_rtf.Rd | 59 formatters-0.5.6/formatters/man/export_as_txt.Rd | 131 - formatters-0.5.6/formatters/man/fmt_config.Rd | 10 formatters-0.5.6/formatters/man/font_lcpi.Rd | 23 formatters-0.5.6/formatters/man/format_value.Rd | 13 formatters-0.5.6/formatters/man/formatters-package.Rd | 3 formatters-0.5.6/formatters/man/ifnotlen0.Rd | 12 formatters-0.5.6/formatters/man/is.wholenumber.Rd | 11 formatters-0.5.6/formatters/man/lab_name.Rd | 10 formatters-0.5.6/formatters/man/list_formats.Rd | 10 formatters-0.5.6/formatters/man/make_row_df.Rd | 69 formatters-0.5.6/formatters/man/matrix_form.Rd | 42 formatters-0.5.6/formatters/man/mpf_accessors.Rd | 17 formatters-0.5.6/formatters/man/mpf_to_rtf.Rd | 43 formatters-0.5.6/formatters/man/nlines.Rd | 13 formatters-0.5.6/formatters/man/num_rep_cols.Rd | 21 formatters-0.5.6/formatters/man/padstr.Rd | 18 formatters-0.5.6/formatters/man/pag_indices_inner.Rd | 90 - formatters-0.5.6/formatters/man/pagdfrow.Rd | 51 formatters-0.5.6/formatters/man/page_lcpp.Rd | 38 formatters-0.5.6/formatters/man/page_types.Rd | 14 formatters-0.5.6/formatters/man/paginate_indices.Rd | 233 +-- formatters-0.5.6/formatters/man/pagination_algo.Rd | 40 formatters-0.5.6/formatters/man/propose_column_widths.Rd | 15 formatters-0.5.6/formatters/man/ref_df_row.Rd | 26 formatters-0.5.6/formatters/man/round_fmt.Rd | 52 formatters-0.5.6/formatters/man/spans_to_viscell.Rd | 29 formatters-0.5.6/formatters/man/spread_integer.Rd | 13 formatters-0.5.6/formatters/man/sprintf_format.Rd | 10 formatters-0.5.6/formatters/man/table_inset.Rd | 25 formatters-0.5.6/formatters/man/test_matrix_form.Rd |only formatters-0.5.6/formatters/man/title_footer.Rd | 12 formatters-0.5.6/formatters/man/tostring.Rd | 66 formatters-0.5.6/formatters/man/var_labels-set.Rd | 14 formatters-0.5.6/formatters/man/var_labels.Rd | 16 formatters-0.5.6/formatters/man/var_labels_remove.Rd | 9 formatters-0.5.6/formatters/man/var_relabel.Rd | 12 formatters-0.5.6/formatters/man/vert_pag_indices.Rd | 24 formatters-0.5.6/formatters/man/with_label.Rd | 9 formatters-0.5.6/formatters/man/wrap_string.Rd | 38 formatters-0.5.6/formatters/tests/testthat/setup-options.R |only formatters-0.5.6/formatters/tests/testthat/setup.R | 1 formatters-0.5.6/formatters/tests/testthat/test-exporters.R | 164 +- formatters-0.5.6/formatters/tests/testthat/test-formatters.R | 100 - formatters-0.5.6/formatters/tests/testthat/test-listings.R |only formatters-0.5.6/formatters/tests/testthat/test-matrix_form.R |only formatters-0.5.6/formatters/tests/testthat/test-pagination.R | 125 + formatters-0.5.6/formatters/tests/testthat/test-print.R |only formatters-0.5.6/formatters/tests/testthat/test-ref_fnotes.R |only formatters-0.5.6/formatters/tests/testthat/test-txt_wrap.R | 153 +- formatters-0.5.6/formatters/vignettes/formatters.Rmd | 2 86 files changed, 2964 insertions(+), 2441 deletions(-)
Title: Interface to 'D4Science' 'StorageHub' API
Description: Provides an interface to 'D4Science' 'StorageHub' API (<https://dev.d4science.org/>). Allows to get user profile, and perform
actions over the 'StorageHub' (workspace) including creation of folders, files management (upload/update/deletion/sharing), and listing of
stored resources.
Author: Emmanuel Blondel [aut, cre]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between d4storagehub4R versions 0.4-3 dated 2023-03-01 and 0.4-4 dated 2024-04-15
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 14 ++++++++++---- R/StoragehubManager.R | 8 +++++--- README.md | 2 +- man/d4storagehub4R.Rd | 30 +++++++++++++++--------------- 6 files changed, 41 insertions(+), 33 deletions(-)
More information about d4storagehub4R at CRAN
Permanent link
Title: A Framework for Building HTTP API
Description: Allows to easily create high-performance full featured HTTP APIs from R
functions. Provides high-level classes such as 'Request', 'Response',
'Application', 'Middleware' in order to streamline server side
application development. Out of the box allows to serve requests using
'Rserve' package, but flexible enough to integrate with other HTTP servers
such as 'httpuv'.
Author: Dmitry Selivanov [aut, cre] ,
Artem Klevtsov [aut] ,
David Zimmermann [ctb],
rexy.ai [cph, fnd]
Maintainer: Dmitry Selivanov <ds@rexy.ai>
Diff between RestRserve versions 1.2.1 dated 2022-09-12 and 1.2.2 dated 2024-04-15
DESCRIPTION | 9 MD5 | 56 +- NEWS.md | 6 R/Application.R | 1146 +++++++++++++++++++++--------------------- R/AuthBackendBasic.R | 2 R/AuthBackendBearer.R | 2 R/BackendRserve.R | 12 R/HTTPDate.R | 2 README.md | 4 build/vignette.rds |binary inst/doc/Authentication.R | 2 inst/doc/Authentication.Rmd | 2 inst/doc/Authentication.html | 333 ++++++------ inst/doc/ContentHandlers.R | 2 inst/doc/ContentHandlers.html | 425 +++++++-------- inst/doc/Logging.R | 2 inst/doc/Logging.html | 173 +++--- inst/doc/Middleware.R | 2 inst/doc/Middleware.html | 285 +++++----- inst/doc/RestRserve.R | 6 inst/doc/RestRserve.html | 239 ++++---- man/ApplicationProcess.Rd | 4 man/AuthBackendBasic.Rd | 4 man/AuthBackendBearer.Rd | 4 man/AuthMiddleware.Rd | 4 man/HTTPDate-class.Rd | 2 src/Makevars | 1 src/Makevars.win | 1 vignettes/Authentication.Rmd | 2 29 files changed, 1364 insertions(+), 1368 deletions(-)
Title: Combining Tree-Boosting with Gaussian Process and Mixed Effects
Models
Description: An R package that allows for combining tree-boosting with Gaussian process and mixed effects models. It also allows for independently doing tree-boosting as well as inference and prediction for Gaussian process and mixed effects models. See <https://github.com/fabsig/GPBoost> for more information on the software and Sigrist (2022, JMLR) <https://www.jmlr.org/papers/v23/20-322.html> and Sigrist (2023, TPAMI) <doi:10.1109/TPAMI.2022.3168152> for more information on the methodology.
Author: Fabio Sigrist [aut, cre],
Tim Gyger [aut],
Pascal Kuendig [aut],
Benoit Jacob [cph],
Gael Guennebaud [cph],
Nicolas Carre [cph],
Pierre Zoppitelli [cph],
Gauthier Brun [cph],
Jean Ceccato [cph],
Jitse Niesen [cph],
Other authors of Eigen for the incl [...truncated...]
Maintainer: Fabio Sigrist <fabiosigrist@gmail.com>
Diff between gpboost versions 1.4.0 dated 2024-04-11 and 1.4.0.1 dated 2024-04-15
DESCRIPTION | 8 - MD5 | 10 - configure.ac | 2 src/include/GPBoost/likelihoods.h | 227 +++++++++----------------------- src/include/GPBoost/optim_utils.h | 21 +- src/include/GPBoost/re_model_template.h | 9 + 6 files changed, 94 insertions(+), 183 deletions(-)
Title: Bayesian Latent Variable Analysis
Description: Fit a variety of Bayesian latent variable models, including confirmatory
factor analysis, structural equation models, and latent growth curve models. References: Merkle & Rosseel (2018) <doi:10.18637/jss.v085.i04>; Merkle et al. (2021) <doi:10.18637/jss.v100.i06>.
Author: Edgar Merkle [aut, cre] ,
Yves Rosseel [aut],
Ben Goodrich [aut],
Mauricio Garnier-Villarreal [ctb]
,
Terrence D. Jorgensen [ctb] ,
Huub Hoofs [ctb] ,
Rens van de Schoot [ctb] ,
Andrew Johnson [ctb] ,
Matthew Emery [ctb]
Maintainer: Edgar Merkle <merklee@missouri.edu>
Diff between blavaan versions 0.5-3 dated 2024-01-19 and 0.5-4 dated 2024-04-15
DESCRIPTION | 6 ++--- MD5 | 49 +++++++++++++++++++++---------------------- NAMESPACE | 4 +-- NEWS.md | 12 ++++++++++ R/blav_object_methods.R | 11 +++++---- R/blav_predict.R | 48 +++++++++++++++++++++++++++++++++++++++++- R/blavaan.R | 38 +++++++++++++++++++++++---------- R/lav_export_stanmarg.R | 32 ++++++++++++++-------------- R/lvgqs.R | 8 +++++-- R/margloglik.R | 20 +++++++++++++++-- R/postpred.R | 18 +++++++++++++++ README.md | 1 inst/stan/stanmarg.stan | 22 ++++++++++++++----- inst/testdata/sysdata.rda |binary man/bcfa.Rd | 4 ++- man/bgrowth.Rd | 4 ++- man/blavCompare.Rd | 6 +++-- man/blavFitIndices.Rd | 2 + man/blavInspect.Rd | 2 + man/blavPredict.Rd | 12 +++++----- man/blavaan.Rd | 8 ++++--- man/bsem.Rd | 6 +++-- man/plot.blavaan.Rd | 4 ++- man/ppmc.Rd | 2 + man/sampleData.Rd |only man/standardizedPosterior.Rd | 7 +++--- 26 files changed, 237 insertions(+), 89 deletions(-)