Title: Wrapper Functions Around 'Sleeper' (Fantasy Sports) API
Description: For those wishing to interact with the 'Sleeper' (Fantasy Sports) API (<https://docs.sleeper.com/>) without looking too much into its documentation (found at <https://docs.sleeper.com/>), this package offers wrapper functions around the available API calls to make it easier.
Author: Nick Bultman [aut, cre, cph]
Maintainer: Nick Bultman <njbultman74@gmail.com>
Diff between sleeperapi versions 1.0.4 dated 2022-09-14 and 1.1.0 dated 2024-05-14
DESCRIPTION | 16 - LICENSE | 2 MD5 | 145 +++++++---- NAMESPACE | 127 +++++++-- R/get_all_nfl_players.R | 126 ++++----- R/get_avatar_picture.R | 104 ++++--- R/get_draft.R | 54 ++-- R/get_draft_pick_trades.R | 60 ++-- R/get_draft_picks.R | 61 ++-- R/get_league.R | 63 ++-- R/get_league_drafts.R | 64 ++-- R/get_league_users.R | 64 ++-- R/get_loser_playoff_bracket.R | 65 ++-- R/get_main_data.R |only R/get_matchups.R | 88 +++--- R/get_rosters.R | 64 ++-- R/get_sport_state.R | 66 ++--- R/get_traded_picks.R | 56 ++-- R/get_transactions.R | 82 +++--- R/get_trending_players.R | 98 +++---- R/get_user.R | 56 ++-- R/get_user_drafts.R | 84 +++--- R/get_user_leagues.R | 82 +++--- R/get_weekly_matchups.R |only R/get_winner_playoff_bracket.R | 65 ++-- R/plot_generate_nfl_player_data.R |only R/plot_league_dashboard.R |only R/plot_league_information_table.R |only R/plot_league_streaks_table.R |only R/plot_nfl_player_data_table.R |only R/plot_nfl_player_high_school_state.R |only R/plot_nfl_top_colleges.R |only R/plot_regular_season_rankings.R |only R/plot_trending_players.R |only R/plot_trending_players_table.R |only R/plot_user_fantasty_points_differential.R |only R/plot_user_fantasy_points_against.R |only R/plot_user_fantasy_points_for.R |only R/plot_user_waiver_budget.R |only R/plot_user_weekly_matchups.R |only R/plot_user_weekly_players.R |only README.md | 35 ++ man/get_all_nfl_players.Rd | 10 man/get_avatar_picture.Rd | 11 man/get_league.Rd | 2 man/get_main_data.Rd |only man/get_weekly_matchups.Rd |only man/plot_generate_nfl_player_data.Rd |only man/plot_league_dashboard.Rd |only man/plot_league_information_table.Rd |only man/plot_league_streaks_table.Rd |only man/plot_nfl_player_data_table.Rd |only man/plot_nfl_player_high_school_state.Rd |only man/plot_nfl_top_colleges.Rd |only man/plot_regular_season_rankings.Rd |only man/plot_trending_players.Rd |only man/plot_trending_players_table.Rd |only man/plot_user_fantasy_points_against.Rd |only man/plot_user_fantasy_points_differential.Rd |only man/plot_user_fantasy_points_for.Rd |only man/plot_user_waiver_budget.Rd |only man/plot_user_weekly_matchups.Rd |only man/plot_user_weekly_players.Rd |only tests/testthat.R | 8 tests/testthat/test-get_all_nfl_players.R | 17 - tests/testthat/test-get_avatar_picture.R | 13 tests/testthat/test-get_draft.R | 12 tests/testthat/test-get_draft_pick_trades.R | 12 tests/testthat/test-get_draft_picks.R | 17 - tests/testthat/test-get_league.R | 17 - tests/testthat/test-get_league_drafts.R | 17 - tests/testthat/test-get_league_users.R | 17 - tests/testthat/test-get_loser_playoff_bracket.R | 17 - tests/testthat/test-get_main_data.R |only tests/testthat/test-get_matchups.R | 17 - tests/testthat/test-get_rosters.R | 17 - tests/testthat/test-get_sport_state.R | 22 + tests/testthat/test-get_traded_picks.R | 14 - tests/testthat/test-get_transactions.R | 17 - tests/testthat/test-get_trending_players.R | 44 +-- tests/testthat/test-get_user.R | 12 tests/testthat/test-get_user_drafts.R | 29 +- tests/testthat/test-get_user_leagues.R | 15 - tests/testthat/test-get_weekly_matchups.R |only tests/testthat/test-get_winner_playoff_bracket.R | 17 - tests/testthat/test-plot_generate_nfl_player_data.R |only tests/testthat/test-plot_league_dashboard.R |only tests/testthat/test-plot_league_information_table.R |only tests/testthat/test-plot_league_streaks_table.R |only tests/testthat/test-plot_nfl_player_data_table.R |only tests/testthat/test-plot_nfl_player_high_school_state.R |only tests/testthat/test-plot_nfl_top_colleges.R |only tests/testthat/test-plot_trending_players.R |only tests/testthat/test-plot_trending_players_table.R |only tests/testthat/test-plot_user_fantasty_points_differential.R |only tests/testthat/test-plot_user_fantasy_points_against.R |only tests/testthat/test-plot_user_fantasy_points_for.R |only tests/testthat/test-plot_user_waiver_budget.R |only tests/testthat/test-plot_user_weekly_matchups.R |only tests/testthat/test-plot_user_weekly_players.R |only 100 files changed, 1218 insertions(+), 883 deletions(-)
Title: Methods for Mediation Analysis with High-Dimensional Mediators
Description: A suite of functions for performing mediation
analysis with high-dimensional mediators. In addition to centralizing code
from several existing packages for high-dimensional mediation analysis, we
provide organized, well-documented functions for a handle of methods
which, though programmed their original authors, have not previously been
formalized into R packages or been made presentable for public use. The
methods we include cover a broad array of approaches and objectives, and are
described in detail by both our companion manuscript---"Methods for
Mediation Analysis with High-Dimensional DNA Methylation Data: Possible
Choices and Comparison"---and the original publications that proposed them.
The specific methods offered by our package include the Bayesian sparse
linear mixed model (BSLMM) by Song et al. (2019); high-dimensional mediation
analysis (HDMA) by Gao et al. (2019); high-dimensional multivariate
mediation (HDMM) by Chén et al. (2018); high-dimensional linear mediation
analy [...truncated...]
Author: Dylan Clark-Boucher [aut, cre],
Mike Kleinsasser [aut]
Maintainer: Dylan Clark-Boucher <dclarkboucher@fas.harvard.edu>
Diff between hdmed versions 1.0.0 dated 2023-02-27 and 1.0.1 dated 2024-05-14
DESCRIPTION | 6 MD5 | 38 +-- R/bslmm.R | 362 +++++++++++++++---------------- R/hdma.R | 306 +++++++++++++------------- R/hdmm.R | 241 ++++++++++---------- R/hima.R | 332 ++++++++++++++-------------- R/medfix.R | 261 +++++++++++----------- R/pathway_lasso.R | 581 +++++++++++++++++++++++++------------------------- R/pcma.R | 335 ++++++++++++++-------------- R/spcma.R | 375 ++++++++++++++++---------------- README.md | 12 - inst/CITATION | 23 + man/mediate_bslmm.Rd | 9 man/mediate_hdma.Rd | 8 man/mediate_hdmm.Rd | 12 - man/mediate_hima.Rd | 8 man/mediate_medfix.Rd | 8 man/mediate_pcma.Rd | 14 - man/mediate_plasso.Rd | 10 man/mediate_spcma.Rd | 14 - 20 files changed, 1485 insertions(+), 1470 deletions(-)
Title: Simplify 'ggplot2' Visualisation
Description: Simplify 'ggplot2' visualisation with 'ggblanket' wrapper
functions.
Author: David Hodge [aut, cre, cph]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between ggblanket versions 8.0.0 dated 2024-04-29 and 9.0.0 dated 2024-05-14
ggblanket-8.0.0/ggblanket/R/colours.R |only ggblanket-8.0.0/ggblanket/R/foundation_mode.R |only ggblanket-8.0.0/ggblanket/R/replace_seq.R |only ggblanket-8.0.0/ggblanket/man/dark_mode_b.Rd |only ggblanket-8.0.0/ggblanket/man/dark_mode_n.Rd |only ggblanket-8.0.0/ggblanket/man/dark_mode_t.Rd |only ggblanket-8.0.0/ggblanket/man/darkness.Rd |only ggblanket-8.0.0/ggblanket/man/figures/README-setup-1.png |only ggblanket-8.0.0/ggblanket/man/figures/README-setup-2.png |only ggblanket-8.0.0/ggblanket/man/figures/README-unnamed-chunk-10-1.png |only ggblanket-8.0.0/ggblanket/man/figures/README-unnamed-chunk-11-1.png |only ggblanket-8.0.0/ggblanket/man/figures/README-unnamed-chunk-12-1.png |only ggblanket-8.0.0/ggblanket/man/figures/README-unnamed-chunk-13-1.png |only ggblanket-8.0.0/ggblanket/man/figures/README-unnamed-chunk-14-1.png |only ggblanket-8.0.0/ggblanket/man/figures/README-unnamed-chunk-15-1.png |only ggblanket-8.0.0/ggblanket/man/figures/README-unnamed-chunk-16-1.png |only ggblanket-8.0.0/ggblanket/man/figures/README-unnamed-chunk-17-1.png |only ggblanket-8.0.0/ggblanket/man/figures/README-unnamed-chunk-18-1.png |only ggblanket-8.0.0/ggblanket/man/figures/README-unnamed-chunk-3-1.png |only ggblanket-8.0.0/ggblanket/man/figures/README-unnamed-chunk-4-1.png |only ggblanket-8.0.0/ggblanket/man/figures/README-unnamed-chunk-5-1.png |only ggblanket-8.0.0/ggblanket/man/figures/README-unnamed-chunk-6-1.png |only ggblanket-8.0.0/ggblanket/man/figures/README-unnamed-chunk-7-1.png |only ggblanket-8.0.0/ggblanket/man/figures/README-unnamed-chunk-8-1.png |only ggblanket-8.0.0/ggblanket/man/figures/README-unnamed-chunk-9-1.png |only ggblanket-8.0.0/ggblanket/man/figures/lifecycle-archived.svg |only ggblanket-8.0.0/ggblanket/man/figures/lifecycle-defunct.svg |only ggblanket-8.0.0/ggblanket/man/figures/lifecycle-deprecated.svg |only ggblanket-8.0.0/ggblanket/man/figures/lifecycle-experimental.svg |only ggblanket-8.0.0/ggblanket/man/figures/lifecycle-maturing.svg |only ggblanket-8.0.0/ggblanket/man/figures/lifecycle-questioning.svg |only ggblanket-8.0.0/ggblanket/man/figures/lifecycle-stable.svg |only ggblanket-8.0.0/ggblanket/man/figures/lifecycle-superseded.svg |only ggblanket-8.0.0/ggblanket/man/foundation_mode_b.Rd |only ggblanket-8.0.0/ggblanket/man/foundation_mode_base.Rd |only ggblanket-8.0.0/ggblanket/man/foundation_mode_n.Rd |only ggblanket-8.0.0/ggblanket/man/foundation_mode_r.Rd |only ggblanket-8.0.0/ggblanket/man/foundation_mode_t.Rd |only ggblanket-8.0.0/ggblanket/man/grey_mode_b.Rd |only ggblanket-8.0.0/ggblanket/man/grey_mode_n.Rd |only ggblanket-8.0.0/ggblanket/man/grey_mode_t.Rd |only ggblanket-8.0.0/ggblanket/man/greyness.Rd |only ggblanket-8.0.0/ggblanket/man/light_mode_b.Rd |only ggblanket-8.0.0/ggblanket/man/light_mode_n.Rd |only ggblanket-8.0.0/ggblanket/man/light_mode_t.Rd |only ggblanket-8.0.0/ggblanket/man/navy.Rd |only ggblanket-8.0.0/ggblanket/man/orange.Rd |only ggblanket-8.0.0/ggblanket/man/pink.Rd |only ggblanket-8.0.0/ggblanket/man/purple.Rd |only ggblanket-8.0.0/ggblanket/man/red.Rd |only ggblanket-8.0.0/ggblanket/man/replace_seq.Rd |only ggblanket-8.0.0/ggblanket/man/teal.Rd |only ggblanket-8.0.0/ggblanket/man/weave_annotate_aes.Rd |only ggblanket-8.0.0/ggblanket/man/weave_col_palette_c.Rd |only ggblanket-8.0.0/ggblanket/man/weave_col_palette_d.Rd |only ggblanket-8.0.0/ggblanket/man/weave_geom_aes.Rd |only ggblanket-8.0.0/ggblanket/man/weave_mode.Rd |only ggblanket-8.0.0/ggblanket/man/weave_theme.Rd |only ggblanket-8.0.0/ggblanket/tests/testthat/test-replace-seq.R |only ggblanket-8.0.0/ggblanket/vignettes/autocomplete_y.png |only ggblanket-9.0.0/ggblanket/DESCRIPTION | 15 ggblanket-9.0.0/ggblanket/MD5 | 405 +- ggblanket-9.0.0/ggblanket/NAMESPACE | 8 ggblanket-9.0.0/ggblanket/NEWS.md | 18 ggblanket-9.0.0/ggblanket/R/colour.R |only ggblanket-9.0.0/ggblanket/R/dark_mode.R | 154 - ggblanket-9.0.0/ggblanket/R/flex_mode.R |only ggblanket-9.0.0/ggblanket/R/gg_area.R | 153 - ggblanket-9.0.0/ggblanket/R/gg_bar.R | 151 - ggblanket-9.0.0/ggblanket/R/gg_bin_2d.R | 152 - ggblanket-9.0.0/ggblanket/R/gg_blanket.R | 913 ++++-- ggblanket-9.0.0/ggblanket/R/gg_boxplot.R | 151 - ggblanket-9.0.0/ggblanket/R/gg_col.R | 153 - ggblanket-9.0.0/ggblanket/R/gg_contour.R | 151 - ggblanket-9.0.0/ggblanket/R/gg_contour_filled.R | 151 - ggblanket-9.0.0/ggblanket/R/gg_crossbar.R | 158 - ggblanket-9.0.0/ggblanket/R/gg_density.R | 151 - ggblanket-9.0.0/ggblanket/R/gg_density_2d.R | 151 - ggblanket-9.0.0/ggblanket/R/gg_density_2d_filled.R | 151 - ggblanket-9.0.0/ggblanket/R/gg_errorbar.R | 156 - ggblanket-9.0.0/ggblanket/R/gg_freqpoly.R | 153 - ggblanket-9.0.0/ggblanket/R/gg_function.R | 151 - ggblanket-9.0.0/ggblanket/R/gg_hex.R | 151 - ggblanket-9.0.0/ggblanket/R/gg_histogram.R | 151 - ggblanket-9.0.0/ggblanket/R/gg_jitter.R | 151 - ggblanket-9.0.0/ggblanket/R/gg_label.R | 156 - ggblanket-9.0.0/ggblanket/R/gg_line.R | 153 - ggblanket-9.0.0/ggblanket/R/gg_linerange.R | 158 - ggblanket-9.0.0/ggblanket/R/gg_path.R | 155 - ggblanket-9.0.0/ggblanket/R/gg_point.R | 151 - ggblanket-9.0.0/ggblanket/R/gg_pointrange.R | 158 - ggblanket-9.0.0/ggblanket/R/gg_polygon.R | 163 - ggblanket-9.0.0/ggblanket/R/gg_qq.R | 151 - ggblanket-9.0.0/ggblanket/R/gg_quantile.R | 157 - ggblanket-9.0.0/ggblanket/R/gg_raster.R | 151 - ggblanket-9.0.0/ggblanket/R/gg_rect.R | 154 - ggblanket-9.0.0/ggblanket/R/gg_ribbon.R | 153 - ggblanket-9.0.0/ggblanket/R/gg_rug.R | 151 - ggblanket-9.0.0/ggblanket/R/gg_segment.R | 151 - ggblanket-9.0.0/ggblanket/R/gg_sf.R | 151 - ggblanket-9.0.0/ggblanket/R/gg_smooth.R | 152 - ggblanket-9.0.0/ggblanket/R/gg_step.R | 154 - ggblanket-9.0.0/ggblanket/R/gg_text.R | 156 - ggblanket-9.0.0/ggblanket/R/gg_tile.R | 151 - ggblanket-9.0.0/ggblanket/R/gg_violin.R | 151 - ggblanket-9.0.0/ggblanket/R/grey_mode.R | 146 - ggblanket-9.0.0/ggblanket/R/light_mode.R | 118 ggblanket-9.0.0/ggblanket/R/mode_defaults.R |only ggblanket-9.0.0/ggblanket/R/set_blanket.R | 51 ggblanket-9.0.0/ggblanket/R/test-unset-blanket.R |only ggblanket-9.0.0/ggblanket/R/utils.R | 34 ggblanket-9.0.0/ggblanket/R/weave.R | 357 +- ggblanket-9.0.0/ggblanket/README.md | 8 ggblanket-9.0.0/ggblanket/inst/WORDLIST | 5 ggblanket-9.0.0/ggblanket/inst/doc/ggblanket.R | 376 -- ggblanket-9.0.0/ggblanket/inst/doc/ggblanket.Rmd | 580 +--- ggblanket-9.0.0/ggblanket/inst/doc/ggblanket.html | 804 ++--- ggblanket-9.0.0/ggblanket/man/aes_contrast.Rd | 136 ggblanket-9.0.0/ggblanket/man/blue.Rd | 41 ggblanket-9.0.0/ggblanket/man/dark_mode_r.Rd | 302 +- ggblanket-9.0.0/ggblanket/man/figures/logo.png |binary ggblanket-9.0.0/ggblanket/man/flex_mode_b.Rd |only ggblanket-9.0.0/ggblanket/man/flex_mode_base.Rd |only ggblanket-9.0.0/ggblanket/man/flex_mode_n.Rd |only ggblanket-9.0.0/ggblanket/man/flex_mode_r.Rd |only ggblanket-9.0.0/ggblanket/man/flex_mode_t.Rd |only ggblanket-9.0.0/ggblanket/man/gg_area.Rd | 332 +- ggblanket-9.0.0/ggblanket/man/gg_bar.Rd | 340 +- ggblanket-9.0.0/ggblanket/man/gg_bin_2d.Rd | 330 +- ggblanket-9.0.0/ggblanket/man/gg_blanket.Rd | 354 +- ggblanket-9.0.0/ggblanket/man/gg_boxplot.Rd | 340 +- ggblanket-9.0.0/ggblanket/man/gg_col.Rd | 346 +- ggblanket-9.0.0/ggblanket/man/gg_contour.Rd | 332 +- ggblanket-9.0.0/ggblanket/man/gg_contour_filled.Rd | 334 +- ggblanket-9.0.0/ggblanket/man/gg_crossbar.Rd | 353 +- ggblanket-9.0.0/ggblanket/man/gg_density.Rd | 338 +- ggblanket-9.0.0/ggblanket/man/gg_density_2d.Rd | 336 +- ggblanket-9.0.0/ggblanket/man/gg_density_2d_filled.Rd | 336 +- ggblanket-9.0.0/ggblanket/man/gg_errorbar.Rd | 354 +- ggblanket-9.0.0/ggblanket/man/gg_freqpoly.Rd | 338 +- ggblanket-9.0.0/ggblanket/man/gg_function.Rd | 330 +- ggblanket-9.0.0/ggblanket/man/gg_hex.Rd | 336 +- ggblanket-9.0.0/ggblanket/man/gg_histogram.Rd | 340 +- ggblanket-9.0.0/ggblanket/man/gg_jitter.Rd | 344 +- ggblanket-9.0.0/ggblanket/man/gg_label.Rd | 347 +- ggblanket-9.0.0/ggblanket/man/gg_line.Rd | 334 +- ggblanket-9.0.0/ggblanket/man/gg_linerange.Rd | 351 +- ggblanket-9.0.0/ggblanket/man/gg_path.Rd | 338 +- ggblanket-9.0.0/ggblanket/man/gg_point.Rd | 336 +- ggblanket-9.0.0/ggblanket/man/gg_pointrange.Rd | 353 +- ggblanket-9.0.0/ggblanket/man/gg_polygon.Rd | 372 +- ggblanket-9.0.0/ggblanket/man/gg_qq.Rd | 340 +- ggblanket-9.0.0/ggblanket/man/gg_quantile.Rd | 334 +- ggblanket-9.0.0/ggblanket/man/gg_raster.Rd | 332 +- ggblanket-9.0.0/ggblanket/man/gg_rect.Rd | 357 +- ggblanket-9.0.0/ggblanket/man/gg_ribbon.Rd | 342 +- ggblanket-9.0.0/ggblanket/man/gg_rug.Rd | 336 +- ggblanket-9.0.0/ggblanket/man/gg_segment.Rd | 336 +- ggblanket-9.0.0/ggblanket/man/gg_sf.Rd | 332 +- ggblanket-9.0.0/ggblanket/man/gg_smooth.Rd | 340 +- ggblanket-9.0.0/ggblanket/man/gg_step.Rd | 338 +- ggblanket-9.0.0/ggblanket/man/gg_text.Rd | 347 +- ggblanket-9.0.0/ggblanket/man/gg_tile.Rd | 340 +- ggblanket-9.0.0/ggblanket/man/gg_violin.Rd | 342 +- ggblanket-9.0.0/ggblanket/man/ggblanket-package.Rd | 52 ggblanket-9.0.0/ggblanket/man/grey.Rd | 5 ggblanket-9.0.0/ggblanket/man/grey_mode_r.Rd | 302 +- ggblanket-9.0.0/ggblanket/man/jumble.Rd | 29 ggblanket-9.0.0/ggblanket/man/light_mode_r.Rd | 302 +- ggblanket-9.0.0/ggblanket/man/lightness.Rd | 22 ggblanket-9.0.0/ggblanket/man/pipe.Rd | 40 ggblanket-9.0.0/ggblanket/man/set_blanket.Rd | 174 - ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-area.svg | 8 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-bar.svg | 8 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-bin-2d.svg | 604 ++-- ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-contour-filled.svg | 28 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-crossbar.svg | 58 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-density-2d-filled.svg | 30 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-errorbar.svg | 66 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-function.svg | 8 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-histogram.svg | 42 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-jitter.svg | 3 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-line.svg | 8 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-linerange.svg | 50 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-path.svg | 50 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-pointrange.svg | 58 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-qq.svg | 24 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-quantile.svg | 8 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-rect.svg | 14 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-ribbon.svg | 34 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-step.svg | 8 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-tile.svg | 21 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-go-further/10.svg | 20 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-go-further/11.svg | 30 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-go-further/12.svg | 42 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-go-further/13.svg | 106 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-go-further/14.svg | 264 - ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-go-further/15.svg | 1170 ++++---- ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-go-further/16.svg | 1434 +++++----- ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-go-further/19.svg | 58 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-go-further/4.svg | 36 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-go-further/7.svg | 8 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-go-further/8.svg | 8 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/article-go-further/9.svg | 340 +- ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/col_palette |only ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/labelled |only ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/modes/dark-mode-r.svg | 870 +++--- ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/modes/grey-mode-r.svg | 852 ++--- ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/modes/light-mode-b.svg | 852 ++--- ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/modes/light-mode-n.svg | 852 ++--- ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/modes/light-mode-r.svg | 852 ++--- ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/modes/light-mode-t.svg | 852 ++--- ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/numeric-col/light-mode-b.svg | 699 ++-- ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/numeric-col/light-mode-n.svg | 684 ++-- ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/numeric-col/light-mode-r.svg | 699 ++-- ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/numeric-col/light-mode-t.svg | 699 ++-- ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/set_blanket/3.svg | 684 ++-- ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/set_blanket/4.svg | 690 ++-- ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/set_blanket/5.svg | 699 ++-- ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/set_blanket/6.svg | 24 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/vignette-ggblanket/10.svg | 155 - ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/vignette-ggblanket/11.svg | 2 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/vignette-ggblanket/12.svg | 2 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/vignette-ggblanket/13.svg | 18 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/vignette-ggblanket/14.svg | 210 - ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/vignette-ggblanket/3.svg | 8 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/vignette-ggblanket/4.svg | 42 ggblanket-9.0.0/ggblanket/tests/testthat/_snaps/vignette-ggblanket/5.svg | 84 ggblanket-9.0.0/ggblanket/tests/testthat/test-article-demo-light.R | 33 ggblanket-9.0.0/ggblanket/tests/testthat/test-article-go-further.R | 16 ggblanket-9.0.0/ggblanket/tests/testthat/test-col_palette.R |only ggblanket-9.0.0/ggblanket/tests/testthat/test-labelled.R |only ggblanket-9.0.0/ggblanket/tests/testthat/test-numeric-col.R | 4 ggblanket-9.0.0/ggblanket/tests/testthat/test-positional_scales.R | 8 ggblanket-9.0.0/ggblanket/tests/testthat/test-vignette-ggblanket.R | 26 ggblanket-9.0.0/ggblanket/vignettes/ggblanket.Rmd | 580 +--- 236 files changed, 19875 insertions(+), 19987 deletions(-)
Title: Data Menu for Radiant: Business Analytics using R and Shiny
Description: The Radiant Data menu includes interfaces for loading, saving,
viewing, visualizing, summarizing, transforming, and combining data. It also
contains functionality to generate reproducible reports of the analyses
conducted in the application.
Author: Vincent Nijs [aut, cre],
Niklas von Hertzen [aut]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>
Diff between radiant.data versions 1.6.3 dated 2023-12-17 and 1.6.6 dated 2024-05-14
DESCRIPTION | 14 +++++++------- MD5 | 18 +++++++++--------- NEWS.md | 7 ++++++- R/deprecated.R | 1 - inst/app/init.R | 5 ++--- inst/app/radiant.R | 4 ++-- inst/app/tools/data/combine_ui.R | 2 +- inst/app/tools/data/view_ui.R | 1 - inst/app/www/style.css | 8 ++++---- man/radiant.data-deprecated.Rd | 1 - 10 files changed, 31 insertions(+), 30 deletions(-)
Title: Sub-National Geospatial Data Archive: Geoprocessing Toolkit
Description: Tools for integrating spatially-misaligned GIS datasets. Part of the Sub-National Geospatial Data Archive System.
Author: Yuri M. Zhukov, Jason Byers, Marty Davidson
Maintainer: Yuri M. Zhukov <zhukov@umich.edu>
Diff between SUNGEO versions 1.2.1 dated 2023-11-03 and 1.3.0 dated 2024-05-14
DESCRIPTION | 12 +-- MD5 | 44 ++++++++------ NAMESPACE | 4 + R/SUNGEO-package.R |only R/SUNGEO.R | 6 - R/get_data.R | 61 +++++-------------- R/make_ticker.R |only R/merge_list.R |only R/point2poly_tess.R | 23 ++----- R/poly2poly_ap.R | 141 ++++++++++++++++++++++++++++++++++------------ R/smart_round.R |only R/update_bbox.R |only README.md | 9 ++ data/available_data.rda |binary data/cc_dict.rda |binary data/clea_deu2009.rda |binary data/clea_deu2009_df.rda |binary data/clea_deu2009_pt.rda |binary data/gpw4_deu2010.rda |binary data/hex_05_deu.rda |binary data/highways_deu1992.rda |binary man/SUNGEO-package.Rd |only man/SUNGEO.Rd | 4 - man/get_data.Rd | 8 +- man/make_ticker.Rd |only man/merge_list.Rd |only man/smart_round.Rd |only man/update_bbox.Rd |only 28 files changed, 183 insertions(+), 129 deletions(-)
Title: Miscellaneous Functions 'T. Yanagida'
Description: Miscellaneous functions for (1) data management (e.g., grand-mean and group-mean centering, coding variables and reverse coding items, scale and cluster scores, reading and writing Excel and SPSS files), (2) descriptive statistics (e.g., frequency table, cross tabulation, effect size measures), (3) missing data (e.g., descriptive statistics for missing data, missing data pattern, Little's test of Missing Completely at Random, and auxiliary variable analysis), (4) multilevel data (e.g., multilevel descriptive statistics, within-group and between-group correlation matrix, multilevel confirmatory factor analysis, level-specific fit indices, cross-level measurement equivalence evaluation, multilevel composite reliability, and multilevel R-squared measures), (5) item analysis (e.g., confirmatory factor analysis, coefficient alpha and omega, between-group and longitudinal measurement equivalence evaluation), and (6) statistical analysis (e.g., confidence intervals, collinearity and residual [...truncated...]
Author: Takuya Yanagida [aut, cre]
Maintainer: Takuya Yanagida <takuya.yanagida@univie.ac.at>
Diff between misty versions 0.6.2 dated 2024-02-05 and 0.6.3 dated 2024-05-14
DESCRIPTION | 8 MD5 | 58 ++--- NEWS.md | 21 + R/center.R | 2 R/ci.mean.R | 22 +- R/ci.prop.R | 6 R/ci.var.R | 20 - R/cor.matrix.R | 4 R/descript.R | 16 - R/df.subset.R | 18 - R/dominance.manual.R | 2 R/freq.R | 118 +++++------ R/item.alpha.R | 19 + R/item.invar.R | 151 ++++---------- R/item.omega.R | 57 ++--- R/mplus.lca.R | 15 - R/multilevel.cor.R | 8 R/multilevel.fit.R | 6 R/multilevel.icc.R | 18 + R/na.test.R | 2 R/read.mplus.R | 70 +++--- R/result.lca.R | 9 R/robust.coef.R | 375 ----------------------------------- R/utils.R | 507 ++++++++++++++++++++++++++++++++++++++++++------ man/center.Rd | 2 man/df.subset.Rd | 18 - man/dominance.manual.Rd | 2 man/mplus.lca.Rd | 13 - man/na.test.Rd | 2 man/read.mplus.Rd | 7 30 files changed, 796 insertions(+), 780 deletions(-)
Title: Integration of 'dplyr' and 'ggplot2' with 'EdSurvey'
Description: Takes objects of class edsurvey.data.frame and converts them to a data.frame within the calling environment of 'dplyr' and 'ggplot2' functions. Additionally, for plotting with 'ggplot2', users can map aesthetics to subject scales and all plausible values will be used. This package supports student level data; to work with school or teacher level data, see '?EdSurvey::getData'.
Author: Blue Webb [aut, cre] ,
Tom Fink [ctb]
Maintainer: Blue Webb <bwebb@air.org>
Diff between tidyEdSurvey versions 0.1.2 dated 2023-06-19 and 0.1.3 dated 2024-05-14
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/dplyr_methods.R | 6 +++++- 3 files changed, 11 insertions(+), 7 deletions(-)
Title: HDX Theme, Scales, and Other Conveniences for 'ggplot2'
Description: A Humanitarian Data Exchange (HDX) theme, color palettes, and
scales for 'ggplot2' to allow users to easily follow the HDX visual design
guide, including convenience functions for for loading and using the
Source Sans 3 font.
Author: Seth Caldwell [aut, cre, cph]
Maintainer: Seth Caldwell <caldwellst@gmail.com>
Diff between gghdx versions 0.1.2 dated 2024-01-22 and 0.1.3 dated 2024-05-14
DESCRIPTION | 10 +- MD5 | 44 +++++----- NAMESPACE | 1 NEWS.md | 9 ++ R/hdx_display_pal.R | 2 R/label_number_hdx.R |only R/scale_hdx.R | 150 ++++++++++++++++++----------------- R/utils-scale-name.R |only README.md | 11 +- build/vignette.rds |binary inst/doc/gghdx.R | 6 - inst/doc/gghdx.Rmd | 9 -- inst/doc/gghdx.html | 83 +++++++++---------- man/figures/README-covid-match-1.png |binary man/figures/README-covid-match-2.png |binary man/figures/README-extrafont-1.png |binary man/figures/README-gghdx-1.png |binary man/figures/README-intro-hdx-1.png |binary man/figures/README-intro-plot-1.png |binary man/figures/README-intro-ramp-1.png |binary man/format_number_hdx.Rd |only man/geom_text_family.Rd | 62 +++++++++++--- man/label_number_hdx.Rd |only man/scale_hdx.Rd | 88 +++++++++----------- vignettes/gghdx.Rmd | 9 -- 25 files changed, 262 insertions(+), 222 deletions(-)
Title: Counterfactual Explanations
Description: Modular and unified R6-based interface for counterfactual explanation methods.
The following methods are currently implemented: Burghmans et al. (2022) <doi:10.48550/arXiv.2104.07411>,
Dandl et al. (2020) <doi:10.1007/978-3-030-58112-1_31> and Wexler et al. (2019) <doi:10.1109/TVCG.2019.2934619>.
Optional extensions allow these methods to be applied to a variety of models and use cases.
Once generated, the counterfactuals can be analyzed and visualized by provided functionalities.
Author: Susanne Dandl [aut, cre] ,
Andreas Hofheinz [aut],
Martin Binder [ctb],
Giuseppe Casalicchio [ctb]
Maintainer: Susanne Dandl <dandls.datascience@gmail.com>
Diff between counterfactuals versions 0.1.2 dated 2023-03-23 and 0.1.4 dated 2024-05-14
DESCRIPTION | 14 - MD5 | 54 +++---- NEWS.md | 10 + R/ConditionalSampler.R | 12 + R/CounterfactualMethodClassif.R | 1 R/CounterfactualMethodRegr.R | 1 R/Counterfactuals.R | 12 + R/MOCClassif.R | 34 ++-- R/MOCRegr.R | 34 ++-- R/NICEClassif.R | 35 ++-- R/NICERegr.R | 43 +++-- R/WhatIfClassif.R | 2 R/WhatIfRegr.R | 2 R/make_param_set.R | 22 +- R/moc_algo.R | 111 +++++++-------- R/utils_moc.R | 123 ++++++++-------- README.md | 11 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/how-to-add-new-cf-methods.html | 232 +++++++++++++++---------------- inst/doc/introduction.html | 236 ++++++++++++++++---------------- inst/doc/other_models.html | 152 ++++++++++---------- man/CounterfactualMethodClassif.Rd | 1 man/CounterfactualMethodRegr.Rd | 1 man/Counterfactuals.Rd | 7 man/MOCClassif.Rd | 3 man/MOCRegr.Rd | 3 man/make_param_set.Rd | 10 - 28 files changed, 623 insertions(+), 543 deletions(-)
More information about counterfactuals at CRAN
Permanent link
Title: POSIX System Utilities
Description: Bindings to system utilities found in most Unix systems such as
POSIX functions which are not part of the Standard C Library.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between unix versions 1.5.7 dated 2024-02-22 and 1.5.8 dated 2024-05-14
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 3 +++ src/fork.c | 5 ++++- 4 files changed, 13 insertions(+), 7 deletions(-)
Title: Time Series Analysis and Computational Finance
Description: Time series analysis and computational finance.
Author: Adrian Trapletti [aut],
Kurt Hornik [aut, cre] ,
Blake LeBaron [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between tseries versions 0.10-55 dated 2023-12-06 and 0.10-56 dated 2024-05-14
ChangeLog | 11 +++++ DESCRIPTION | 8 ++-- MD5 | 24 ++++++------ build/partial.rdb |binary data/NelPlo.rda |binary data/USeconomic.rda |binary data/bev.rda |binary data/camp.rda |binary data/ice.river.rda |binary data/nino.rda |binary data/tcm.rda |binary data/tcmd.rda |binary src/dsumsl.f | 101 ++++++++++++++++++++++++++++------------------------ 13 files changed, 83 insertions(+), 61 deletions(-)
Title: Producing and Reproducing Results
Description: A system for embedded scientific computing and reproducible research with R.
The OpenCPU server exposes a simple but powerful HTTP api for RPC and data interchange
with R. This provides a reliable and scalable foundation for statistical services or
building R web applications. The OpenCPU server runs either as a single-user development
server within the interactive R session, or as a multi-user Linux stack based on Apache2.
The entire system is fully open source and permissively licensed. The OpenCPU website
has detailed documentation and example apps.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between opencpu versions 2.2.11 dated 2023-08-07 and 2.2.12 dated 2024-05-14
DESCRIPTION | 6 +++--- MD5 | 6 +++--- build/vignette.rds |binary inst/doc/opencpu-paper.pdf |binary 4 files changed, 6 insertions(+), 6 deletions(-)
Title: Econometrics of Network Data
Description: Simulating and estimating peer effect models and network formation models. The class of peer effect models includes linear-in-means models (Lee, 2004; <doi:10.1111/j.1468-0262.2004.00558.x>), Tobit models (Xu and Lee, 2015; <doi:10.1016/j.jeconom.2015.05.004>), and discrete numerical data models (Houndetoungan, 2024; <doi:10.2139/ssrn.3721250>). The network formation models include pair-wise regressions with degree heterogeneity (Graham, 2017; <doi:10.3982/ECTA12679>) and exponential random graph models (Mele, 2017; <doi:10.3982/ECTA10400>).
Author: Aristide Houndetoungan [cre, aut]
Maintainer: Aristide Houndetoungan <ahoundetoungan@gmail.com>
Diff between CDatanet versions 2.1.3 dated 2024-03-09 and 2.2.0 dated 2024-05-14
CDatanet-2.1.3/CDatanet/R/CDnetsim.R |only CDatanet-2.1.3/CDatanet/R/SARTestim.R |only CDatanet-2.1.3/CDatanet/R/SARTsim.R |only CDatanet-2.1.3/CDatanet/R/SARestim.R |only CDatanet-2.1.3/CDatanet/R/SARsim.R |only CDatanet-2.1.3/CDatanet/R/fcoefficients.R |only CDatanet-2.1.3/CDatanet/R/formula.to.data.R |only CDatanet-2.1.3/CDatanet/R/jacobSAR.R |only CDatanet-2.1.3/CDatanet/src/CDincomInfo.cpp |only CDatanet-2.1.3/CDatanet/src/CDincomInfo.rho.cpp |only CDatanet-2.1.3/CDatanet/src/Homophily.cpp |only CDatanet-2.1.3/CDatanet/src/SAR.cpp |only CDatanet-2.1.3/CDatanet/src/SARTComplet.cpp |only CDatanet-2.1.3/CDatanet/src/SARTIncomplet.cpp |only CDatanet-2.2.0/CDatanet/DESCRIPTION | 16 CDatanet-2.2.0/CDatanet/MD5 | 77 - CDatanet-2.2.0/CDatanet/NAMESPACE | 26 CDatanet-2.2.0/CDatanet/NEWS.md | 22 CDatanet-2.2.0/CDatanet/R/CDatanet.R | 14 CDatanet-2.2.0/CDatanet/R/RcppExports.R | 176 +- CDatanet-2.2.0/CDatanet/R/auxfunc.R |only CDatanet-2.2.0/CDatanet/R/cdnet.R | 1436 +++++++++++++----------- CDatanet-2.2.0/CDatanet/R/homophilidata.R | 4 CDatanet-2.2.0/CDatanet/R/homophily.fe.R | 4 CDatanet-2.2.0/CDatanet/R/homophily.re.R | 4 CDatanet-2.2.0/CDatanet/R/sar.R |only CDatanet-2.2.0/CDatanet/R/sart.R |only CDatanet-2.2.0/CDatanet/build/partial.rdb |binary CDatanet-2.2.0/CDatanet/man/CDatanet-package.Rd | 14 CDatanet-2.2.0/CDatanet/man/cdnet.Rd | 197 +-- CDatanet-2.2.0/CDatanet/man/homophili.data.Rd | 4 CDatanet-2.2.0/CDatanet/man/homophily.fe.Rd | 4 CDatanet-2.2.0/CDatanet/man/homophily.re.Rd | 4 CDatanet-2.2.0/CDatanet/man/peer.avg.Rd |only CDatanet-2.2.0/CDatanet/man/print.simcdEy.Rd |only CDatanet-2.2.0/CDatanet/man/remove.ids.Rd |only CDatanet-2.2.0/CDatanet/man/sar.Rd | 81 - CDatanet-2.2.0/CDatanet/man/sart.Rd | 138 +- CDatanet-2.2.0/CDatanet/man/simcdEy.Rd |only CDatanet-2.2.0/CDatanet/man/simcdnet.Rd | 170 +- CDatanet-2.2.0/CDatanet/man/simnetwork.Rd |only CDatanet-2.2.0/CDatanet/man/simsar.Rd | 66 - CDatanet-2.2.0/CDatanet/man/simsart.Rd | 104 - CDatanet-2.2.0/CDatanet/man/summary.cdnet.Rd | 26 CDatanet-2.2.0/CDatanet/man/summary.sar.Rd | 13 CDatanet-2.2.0/CDatanet/man/summary.sart.Rd | 13 CDatanet-2.2.0/CDatanet/man/vec.to.mat.Rd |only CDatanet-2.2.0/CDatanet/src/RcppExports.cpp | 967 ++++++---------- CDatanet-2.2.0/CDatanet/src/auxfunc.cpp |only CDatanet-2.2.0/CDatanet/src/cdnet.cpp |only CDatanet-2.2.0/CDatanet/src/homophily.cpp |only CDatanet-2.2.0/CDatanet/src/sar.cpp |only CDatanet-2.2.0/CDatanet/src/sartcomplet.cpp |only CDatanet-2.2.0/CDatanet/src/sartincomplet.cpp |only 54 files changed, 1788 insertions(+), 1792 deletions(-)
Title: Methods for the Evaluation of Survival Models
Description: Provides predictive accuracy tools to evaluate time-to-event survival models. This includes calculating the concordance probability estimate that incorporates the follow-up time for a particular study developed by Devlin, Gonen, Heller (2020)<doi:10.1007/s10985-020-09503-3>. It also evaluates the concordance probability estimate for nested Cox proportional hazards models using a projection-based approach by Heller and Devlin (under review).
Author: Sean Devlin [aut, cre],
Glenn Heller [aut]
Maintainer: Sean Devlin <devlins@mskcc.org>
Diff between SurvEval versions 1.0 dated 2024-05-07 and 1.1 dated 2024-05-14
DESCRIPTION | 6 - MD5 | 6 - R/ProjectionCPE.R | 176 ++++++++++++++++++++++++++------------------------- man/ProjectionCPE.Rd | 6 - 4 files changed, 100 insertions(+), 94 deletions(-)
Title: Non-Supervised Regional Frequency Analysis
Description: A collection of statistical tools for objective (non-supervised) applications
of the Regional Frequency Analysis methods in hydrology.
The package refers to the index-value method and, more precisely, helps the
hydrologist to: (1) regionalize the index-value; (2) form homogeneous regions
with similar growth curves; (3) fit distribution functions to the
empirical regional growth curves.
Most of the methods are those described in the Flood Estimation Handbook
(Centre for Ecology & Hydrology, 1999, ISBN:9781906698003).
Homogeneity tests from Hosking and Wallis (1993) <doi:10.1029/92WR01980>
and Viglione et al. (2007) <doi:10.1029/2006WR005095> are available.
Author: Alberto Viglione [aut, cre],
Francesco Laio [ctb],
Eric Gaume [ctb],
Olivier Payrastre [ctb],
Jose Luis Salinas [ctb],
Chi Cong N'guyen [ctb],
Karine Halbert [ctb]
Maintainer: Alberto Viglione <alberto.viglione@polito.it>
Diff between nsRFA versions 0.7-16 dated 2023-11-13 and 0.7-17 dated 2024-05-14
nsRFA-0.7-16/nsRFA/R/HW.original.R |only nsRFA-0.7-16/nsRFA/R/bestlm.R |only nsRFA-0.7-16/nsRFA/inst/doc/nsRFA_ex01.R |only nsRFA-0.7-16/nsRFA/inst/doc/nsRFA_ex01.Rnw |only nsRFA-0.7-16/nsRFA/inst/doc/nsRFA_ex01.pdf |only nsRFA-0.7-16/nsRFA/man/HW.original.Rd |only nsRFA-0.7-16/nsRFA/man/bestlm.Rd |only nsRFA-0.7-16/nsRFA/src |only nsRFA-0.7-16/nsRFA/vignettes/nsRFA_ex01.Rnw |only nsRFA-0.7-17/nsRFA/DESCRIPTION | 25 +---- nsRFA-0.7-17/nsRFA/MD5 | 89 +----------------- nsRFA-0.7-17/nsRFA/NAMESPACE | 4 nsRFA-0.7-17/nsRFA/build/vignette.rds |binary nsRFA-0.7-17/nsRFA/inst/doc/BayesianMCMC_reg.pdf |binary nsRFA-0.7-17/nsRFA/inst/doc/Fig11GriffisStedinger.pdf |binary nsRFA-0.7-17/nsRFA/inst/doc/Fig1ElamirSeheult.pdf |binary nsRFA-0.7-17/nsRFA/inst/doc/MSClaio2008.pdf |binary nsRFA-0.7-17/nsRFA/inst/doc/nsRFA_ex02.pdf |binary nsRFA-0.7-17/nsRFA/man/nsRFA-package.Rd | 9 + 19 files changed, 22 insertions(+), 105 deletions(-)
Title: Collection of Methods Constructed using Kernel-Based Quadratic
Distances
Description: It includes test for multivariate normality, test for
uniformity on the Sphere, non-parametric two- and k-sample tests,
random generation of points from the Poisson kernel-based density and
clustering algorithm for spherical data. For more information see
Saraceno, G., Markatou, M., Mukhopadhyay, R., Golzy, M. (2024)
<doi:10.48550/arXiv.2402.02290>, Ding, Y., Markatou, M., Saraceno, G. (2023)
<doi:10.5705/ss.202022.0347>, and Golzy, M., Markatou, M. (2020)
<doi:10.1080/10618600.2020.1740713>.
Author: Giovanni Saraceno [aut, cre] ,
Marianthi Markatou [aut],
Raktim Mukhopadhyay [aut],
Mojgan Golzy [aut]
Maintainer: Giovanni Saraceno <gsaracen@buffalo.edu>
Diff between QuadratiK versions 1.0.0 dated 2024-02-23 and 1.1.0 dated 2024-05-14
QuadratiK-1.0.0/QuadratiK/man/summary_stat.Rd |only QuadratiK-1.0.0/QuadratiK/man/validation.Rd |only QuadratiK-1.1.0/QuadratiK/DESCRIPTION | 52 QuadratiK-1.1.0/QuadratiK/MD5 | 136 - QuadratiK-1.1.0/QuadratiK/NAMESPACE | 8 QuadratiK-1.1.0/QuadratiK/R/QuadratiK-package.R |only QuadratiK-1.1.0/QuadratiK/R/RcppExports.R | 90 QuadratiK-1.1.0/QuadratiK/R/classes.R | 74 QuadratiK-1.1.0/QuadratiK/R/clustering_functions.R | 1281 ++++++---- QuadratiK-1.1.0/QuadratiK/R/critical_value.R | 112 QuadratiK-1.1.0/QuadratiK/R/h_selection.R | 145 - QuadratiK-1.1.0/QuadratiK/R/kb.test.R | 305 +- QuadratiK-1.1.0/QuadratiK/R/pk.test.R | 110 QuadratiK-1.1.0/QuadratiK/R/pkbd_functions.R | 329 +- QuadratiK-1.1.0/QuadratiK/R/srr-stats-standards.R |only QuadratiK-1.1.0/QuadratiK/R/utility.R | 109 QuadratiK-1.1.0/QuadratiK/R/wireless.R | 27 QuadratiK-1.1.0/QuadratiK/README.md | 10 QuadratiK-1.1.0/QuadratiK/build/vignette.rds |binary QuadratiK-1.1.0/QuadratiK/inst/doc/TwoSample_test.R | 8 QuadratiK-1.1.0/QuadratiK/inst/doc/TwoSample_test.Rmd | 9 QuadratiK-1.1.0/QuadratiK/inst/doc/TwoSample_test.html | 42 QuadratiK-1.1.0/QuadratiK/inst/doc/generate_rpkb.R |only QuadratiK-1.1.0/QuadratiK/inst/doc/generate_rpkb.Rmd |only QuadratiK-1.1.0/QuadratiK/inst/doc/generate_rpkb.html |only QuadratiK-1.1.0/QuadratiK/inst/doc/kSample_test.R | 10 QuadratiK-1.1.0/QuadratiK/inst/doc/kSample_test.Rmd | 11 QuadratiK-1.1.0/QuadratiK/inst/doc/kSample_test.html | 18 QuadratiK-1.1.0/QuadratiK/inst/doc/uniformity.R | 8 QuadratiK-1.1.0/QuadratiK/inst/doc/uniformity.Rmd | 9 QuadratiK-1.1.0/QuadratiK/inst/doc/uniformity.html | 14 QuadratiK-1.1.0/QuadratiK/inst/doc/wireless_clustering.R | 11 QuadratiK-1.1.0/QuadratiK/inst/doc/wireless_clustering.Rmd | 12 QuadratiK-1.1.0/QuadratiK/inst/doc/wireless_clustering.html | 4 QuadratiK-1.1.0/QuadratiK/man/DOF_norm.Rd |only QuadratiK-1.1.0/QuadratiK/man/QuadratiK-package.Rd | 89 QuadratiK-1.1.0/QuadratiK/man/compare_qq.Rd | 44 QuadratiK-1.1.0/QuadratiK/man/compute_CV.Rd | 19 QuadratiK-1.1.0/QuadratiK/man/compute_stats.Rd | 48 QuadratiK-1.1.0/QuadratiK/man/cv_ksample.Rd | 17 QuadratiK-1.1.0/QuadratiK/man/dpkb.Rd | 54 QuadratiK-1.1.0/QuadratiK/man/generate_SN.Rd | 3 QuadratiK-1.1.0/QuadratiK/man/kb.test-class.Rd | 30 QuadratiK-1.1.0/QuadratiK/man/kb.test.Rd | 94 QuadratiK-1.1.0/QuadratiK/man/normal_CV.Rd | 12 QuadratiK-1.1.0/QuadratiK/man/pk.test-class.Rd | 17 QuadratiK-1.1.0/QuadratiK/man/pk.test.Rd | 41 QuadratiK-1.1.0/QuadratiK/man/pkbc-class.Rd | 7 QuadratiK-1.1.0/QuadratiK/man/pkbc.Rd | 102 QuadratiK-1.1.0/QuadratiK/man/pkbc_validation.Rd |only QuadratiK-1.1.0/QuadratiK/man/plot.pkbc.Rd |only QuadratiK-1.1.0/QuadratiK/man/poisson_CV.Rd | 19 QuadratiK-1.1.0/QuadratiK/man/predict.pkbc.Rd |only QuadratiK-1.1.0/QuadratiK/man/sample_hypersphere.Rd | 2 QuadratiK-1.1.0/QuadratiK/man/select_h.Rd | 180 - QuadratiK-1.1.0/QuadratiK/man/stats_clusters.Rd |only QuadratiK-1.1.0/QuadratiK/man/summary-kb.test-method.Rd | 64 QuadratiK-1.1.0/QuadratiK/man/summary-pk.test-method.Rd | 9 QuadratiK-1.1.0/QuadratiK/man/summary.pkbc.Rd |only QuadratiK-1.1.0/QuadratiK/man/var_k.Rd |only QuadratiK-1.1.0/QuadratiK/man/var_norm.Rd |only QuadratiK-1.1.0/QuadratiK/man/var_two.Rd |only QuadratiK-1.1.0/QuadratiK/man/wireless.Rd | 37 QuadratiK-1.1.0/QuadratiK/src/RcppExports.cpp | 72 QuadratiK-1.1.0/QuadratiK/src/kernel_function.cpp | 375 ++ QuadratiK-1.1.0/QuadratiK/tests/testthat/Rplots.pdf |binary QuadratiK-1.1.0/QuadratiK/tests/testthat/test-dpkb.R |only QuadratiK-1.1.0/QuadratiK/tests/testthat/test-kb.test.R | 217 + QuadratiK-1.1.0/QuadratiK/tests/testthat/test-pk.test.R | 81 QuadratiK-1.1.0/QuadratiK/tests/testthat/test-pkbc.R | 94 QuadratiK-1.1.0/QuadratiK/tests/testthat/test-rpkb.R | 77 QuadratiK-1.1.0/QuadratiK/tests/testthat/test-sample_hypersphere.R |only QuadratiK-1.1.0/QuadratiK/tests/testthat/test-select_h.R |only QuadratiK-1.1.0/QuadratiK/tests/testthat/test-stats_clusters.R |only QuadratiK-1.1.0/QuadratiK/tests/testthat/test-validation.R |only QuadratiK-1.1.0/QuadratiK/vignettes/TwoSample_test.Rmd | 9 QuadratiK-1.1.0/QuadratiK/vignettes/generate_rpkb.Rmd |only QuadratiK-1.1.0/QuadratiK/vignettes/kSample_test.Rmd | 11 QuadratiK-1.1.0/QuadratiK/vignettes/uniformity.Rmd | 9 QuadratiK-1.1.0/QuadratiK/vignettes/wireless_clustering.Rmd | 12 80 files changed, 3295 insertions(+), 1494 deletions(-)
Title: Calculates the Percentage CV for Mass Spectrometry-Based
Proteomics Data
Description: Calculates the percentage coefficient of variation (CV) for mass spectrometry-based proteomic data. The CV can be calculated with the traditional formula for raw (non log transformed) intensity data, or log transformed data. This package currently does not reference any academic publication.
Author: Alejandro Brenes [aut, cre]
Maintainer: Alejandro Brenes <abrenes@ed.ac.uk>
Diff between proteomicsCV versions 0.1.0 dated 2024-02-17 and 0.2.5 dated 2024-05-14
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- NAMESPACE | 4 +++- R/proteomicsCV.R | 8 +++++++- man/proteomicsCV.Rd | 17 ++++++++++++----- 5 files changed, 32 insertions(+), 17 deletions(-)
Title: Hierarchical Partitioning of Marginal R2 for Generalized
Mixed-Effect Models
Description: Conducts hierarchical partitioning to calculate individual contributions of each predictor (fixed effects) towards marginal R2 for generalized linear mixed-effect model (including lm, glm and glmm) based on output of r.squaredGLMM() in 'MuMIn', applying the algorithm of Lai J.,Zou Y., Zhang S.,Zhang X.,Mao L.(2022)glmm.hp: an R package for computing individual effect of predictors in generalized linear mixed models.Journal of Plant Ecology,15(6)1302-1307<doi:10.1093/jpe/rtac096>.
Author: Jiangshan Lai [aut, cre] ,
Kim Nimon [aut]
Maintainer: Jiangshan Lai <lai@njfu.edu.cn>
Diff between glmm.hp versions 0.1-2 dated 2024-01-08 and 0.1-3 dated 2024-05-14
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/glmm.hp.r | 11 ++++++++--- 3 files changed, 14 insertions(+), 9 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-05-03 0.10.5
2024-05-02 0.10.4
Title: Regression Models with Break-Points / Change-Points Estimation
(with Possibly Random Effects)
Description: Fitting regression models where, in addition to possible linear terms, one or more covariates have segmented (i.e., broken-line
or piece-wise linear) or stepmented (i.e. piece-wise constant) effects.
Multiple breakpoints for the same variable are allowed. The estimation method is discussed in Muggeo (2003, <doi:10.1002/sim.1545>) and
illustrated in Muggeo (2008, <https://www.r-project.org/doc/Rnews/Rnews_2008-1.pdf>). An approach for hypothesis testing is presented
in Muggeo (2016, <doi:10.1080/00949655.2016.1149855>), and interval estimation for the breakpoint is discussed in Muggeo (2017, <doi:10.1111/anzs.12200>).
Segmented mixed models, i.e. random effects in the change point, are discussed in Muggeo (2014, <doi:10.1177/1471082X13504721>).
Estimation of piecewise-constant relationships and changepoints (mean-shift models) is
discussed in Fasola et al. (2018, <doi:10.1007/s00180-017-0740-4>).
Author: Vito M. R. Muggeo [aut, cre]
Maintainer: Vito M. R. Muggeo <vito.muggeo@unipa.it>
Diff between segmented versions 2.0-4 dated 2024-04-19 and 2.1-0 dated 2024-05-14
DESCRIPTION | 9 MD5 | 95 +-- NAMESPACE | 161 +++--- NEWS | 12 R/model.matrix.segmented.r | 5 R/model.matrix.stepmented.r | 2 R/plot.segmented.r | 69 +- R/plot.stepmented.r | 800 +++++++++++++++++-------------- R/points.segmented.r | 6 R/predict.segmented.r | 32 + R/predict.stepmented.R |only R/print.stepmented.r | 7 R/seg.Ar.fit.boot.r | 51 +- R/seg.def.fit.boot.r | 64 +- R/seg.glm.fit.boot.r | 53 +- R/seg.glm.fit.r | 15 R/seg.lm.fit.boot.r | 69 +- R/seg.lm.fit.r | 34 + R/seg.num.fit.boot.r | 52 +- R/seg.num.fit.r | 42 + R/seg.r | 3 R/segConstr.glm.fit.boot.r | 48 + R/segConstr.glm.fit.r | 3 R/segConstr.lm.fit.boot.r | 52 +- R/segConstr.lm.fit.r | 872 +++++++++++++++++----------------- R/segmented.glm.R | 9 R/segmented.lm.R | 24 R/segmented.numeric.R | 4 R/segreg.r | 93 ++- R/selgmented.R | 31 - R/step.glm.fit.boot.r | 447 ++++++++--------- R/step.glm.fit.r | 3 R/step.lm.fit.boot.r | 9 R/step.lm.fit.r | 669 +++++++++++++------------- R/step.num.fit.boot.r | 425 ++++++++-------- R/step.ts.fit.boot.r | 433 ++++++++--------- R/stepmented.glm.R | 1113 ++++++++++++++++++++++---------------------- R/stepmented.lm.R | 1033 ++++++++++++++++++++-------------------- R/stepreg.r |only R/summary.segmented.R | 9 R/summary.stepmented.R | 237 +++++---- R/vcov.stepmented.R | 296 +++++------ man/confint.segmented.Rd | 3 man/plot.segmented.Rd | 2 man/plot.stepmented.Rd | 16 man/predict.segmented.Rd | 17 man/predict.stepmented.Rd |only man/seg.Rd | 12 man/segmented-package.Rd | 4 man/segreg.Rd | 44 + 50 files changed, 3980 insertions(+), 3509 deletions(-)
Title: Loading Data from 'Google Ads API'
Description: Interface for loading data from 'Google Ads API',
see <https://developers.google.com/google-ads/api/docs/start>.
Package provide function for authorization and loading reports.
Author: Alexey Seleznev [aut, cre] ,
Netpeak [cph]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rgoogleads versions 0.10.0 dated 2023-09-17 and 0.11.0 dated 2024-05-14
DESCRIPTION | 10 MD5 | 34 - NEWS.md | 3 R/gads_auth.R | 823 ++++++++++++++++----------------- R/gads_get_accessible_customers.R | 2 R/gads_get_ad_group_criterions.R | 2 R/gads_get_ads.R | 304 +++++------- R/gads_get_campaigns.R | 1 R/gads_utils.R | 288 +++++------ R/zzz.R | 2 inst/doc/migrate_from_radrowds_us.html | 15 inst/doc/migrate_from_radwords_ru.html | 12 man/gads_auth.Rd | 55 +- man/gads_auth_configure.Rd | 39 + man/gads_get_accessible_customers.Rd | 2 man/gads_get_ad_group_criterions.Rd | 28 - man/gads_get_ads.Rd | 40 - man/gads_get_campaigns.Rd | 4 18 files changed, 836 insertions(+), 828 deletions(-)
Title: Cross-Validation for Multi-Population Mortality Models
Description: Implementation of cross-validation method for testing the forecasting accuracy of several multi-population mortality models. The family of multi-population includes several multi-population mortality models proposed through the actuarial and demography literature. The package includes functions for fitting and forecast the mortality rates of several populations. Additionally, we include functions for testing the forecasting accuracy of different multi-population models.
References.
Atance, D., Debon, A., and Navarro, E. (2020) <doi:10.3390/math8091550>.
Bergmeir, C. & Benitez, J.M. (2012) <doi:10.1016/j.ins.2011.12.028>.
Debon, A., Montes, F., & Martinez-Ruiz, F. (2011) <doi:10.1007/s13385-011-0043-z>.
Lee, R.D. & Carter, L.R. (1992) <doi:10.1080/01621459.1992.10475265>.
Russolillo, M., Giordano, G., & Haberman, S. (2011) <doi:10.1080/03461231003611933>.
Santolino, M. (2023) <doi:10.3390/risks11100170>.
Author: David Atance [aut, cre] ,
Ana Debon [aut]
Maintainer: David Atance <david.atance@uah.es>
Diff between CvmortalityMult versions 1.0.1 dated 2024-05-06 and 1.0.2 dated 2024-05-14
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/plot.forLCmulti.R | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
More information about CvmortalityMult at CRAN
Permanent link
Title: Collection of Convenient Functions for Common Statistical
Computations
Description: Collection of convenient functions for common statistical computations,
which are not directly provided by R's base or stats packages.
This package aims at providing, first, shortcuts for statistical measures,
which otherwise could only be calculated with additional effort
(like Cramer's V, Phi, or effect size statistics like Eta or Omega squared),
or for which currently no functions available. Second, another focus
lies on weighted variants of common statistical measures and tests
like weighted standard error, mean, t-test, correlation, and more.
Author: Daniel Luedecke [aut, cre]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between sjstats versions 0.18.2 dated 2022-11-19 and 0.19.0 dated 2024-05-14
sjstats-0.18.2/sjstats/R/grpmean.R |only sjstats-0.18.2/sjstats/R/mean_n.R |only sjstats-0.18.2/sjstats/R/mwu.R |only sjstats-0.18.2/sjstats/R/wtd_chisqtest.R |only sjstats-0.18.2/sjstats/R/wtd_mean.R |only sjstats-0.18.2/sjstats/R/wtd_median.R |only sjstats-0.18.2/sjstats/R/wtd_mwu.R |only sjstats-0.18.2/sjstats/R/wtd_sd.R |only sjstats-0.18.2/sjstats/R/wtd_ttest.R |only sjstats-0.18.2/sjstats/man/mean_n.Rd |only sjstats-0.18.2/sjstats/man/means_by_group.Rd |only sjstats-0.18.2/sjstats/man/mwu.Rd |only sjstats-0.18.2/sjstats/man/weighted_sd.Rd |only sjstats-0.18.2/sjstats/tests/testthat/test-grpmean.R |only sjstats-0.19.0/sjstats/DESCRIPTION | 17 sjstats-0.19.0/sjstats/MD5 | 161 ++-- sjstats-0.19.0/sjstats/NAMESPACE | 143 --- sjstats-0.19.0/sjstats/NEWS.md | 22 sjstats-0.19.0/sjstats/R/Deprecated.R | 16 sjstats-0.19.0/sjstats/R/S3-methods.R | 364 +--------- sjstats-0.19.0/sjstats/R/anova_stats.R | 111 +-- sjstats-0.19.0/sjstats/R/auto_prior.R | 44 - sjstats-0.19.0/sjstats/R/boot_ci.R | 197 +---- sjstats-0.19.0/sjstats/R/bootstrap.R | 14 sjstats-0.19.0/sjstats/R/chi_squared_test.R |only sjstats-0.19.0/sjstats/R/confint_ncg.R | 12 sjstats-0.19.0/sjstats/R/cramer.R | 45 - sjstats-0.19.0/sjstats/R/cv.R | 4 sjstats-0.19.0/sjstats/R/cv_error.R | 50 - sjstats-0.19.0/sjstats/R/find_beta.R | 62 - sjstats-0.19.0/sjstats/R/gmd.R | 39 - sjstats-0.19.0/sjstats/R/gof.R | 3 sjstats-0.19.0/sjstats/R/helpfunctions.R | 132 ++- sjstats-0.19.0/sjstats/R/inequ_trends.R | 16 sjstats-0.19.0/sjstats/R/is_prime.R | 14 sjstats-0.19.0/sjstats/R/kruskal_wallis_test.R |only sjstats-0.19.0/sjstats/R/mann_whitney_test.R |only sjstats-0.19.0/sjstats/R/phi.R | 25 sjstats-0.19.0/sjstats/R/prop.R | 208 +---- sjstats-0.19.0/sjstats/R/re-exports.R | 25 sjstats-0.19.0/sjstats/R/samplesize_mixed.R | 10 sjstats-0.19.0/sjstats/R/se_ybar.R | 17 sjstats-0.19.0/sjstats/R/select_helpers.R | 5 sjstats-0.19.0/sjstats/R/svy_median.R | 7 sjstats-0.19.0/sjstats/R/svyglmnb.R | 7 sjstats-0.19.0/sjstats/R/svyglmzip.R | 15 sjstats-0.19.0/sjstats/R/t_test.R |only sjstats-0.19.0/sjstats/R/var_pop.R | 14 sjstats-0.19.0/sjstats/R/weight.R | 6 sjstats-0.19.0/sjstats/R/wilcoxon_test.R |only sjstats-0.19.0/sjstats/R/wtd_cor.R | 26 sjstats-0.19.0/sjstats/R/wtd_se.R | 49 + sjstats-0.19.0/sjstats/R/wtd_variance.R | 4 sjstats-0.19.0/sjstats/R/xtab_statistics.R | 167 ++-- sjstats-0.19.0/sjstats/README.md | 18 sjstats-0.19.0/sjstats/build/partial.rdb |binary sjstats-0.19.0/sjstats/man/anova_stats.Rd | 82 +- sjstats-0.19.0/sjstats/man/auto_prior.Rd | 166 ++-- sjstats-0.19.0/sjstats/man/boot_ci.Rd | 256 ++----- sjstats-0.19.0/sjstats/man/bootstrap.Rd | 168 ++-- sjstats-0.19.0/sjstats/man/chi_squared_test.Rd |only sjstats-0.19.0/sjstats/man/chisq_gof.Rd | 124 +-- sjstats-0.19.0/sjstats/man/crosstable_statistics.Rd | 328 ++++----- sjstats-0.19.0/sjstats/man/cv.Rd | 66 - sjstats-0.19.0/sjstats/man/cv_error.Rd | 98 +- sjstats-0.19.0/sjstats/man/design_effect.Rd | 86 +- sjstats-0.19.0/sjstats/man/find_beta.Rd | 215 ++--- sjstats-0.19.0/sjstats/man/gmd.Rd | 75 +- sjstats-0.19.0/sjstats/man/inequ_trend.Rd | 141 +-- sjstats-0.19.0/sjstats/man/is_prime.Rd | 48 - sjstats-0.19.0/sjstats/man/kruskal_wallis_test.Rd |only sjstats-0.19.0/sjstats/man/mann_whitney_test.Rd |only sjstats-0.19.0/sjstats/man/nhanes_sample.Rd | 30 sjstats-0.19.0/sjstats/man/prop.Rd | 203 ++--- sjstats-0.19.0/sjstats/man/r2.Rd | 6 sjstats-0.19.0/sjstats/man/reexports.Rd | 13 sjstats-0.19.0/sjstats/man/samplesize_mixed.Rd | 38 - sjstats-0.19.0/sjstats/man/se_ybar.Rd | 14 sjstats-0.19.0/sjstats/man/svyglm.nb.Rd | 48 - sjstats-0.19.0/sjstats/man/svyglm.zip.Rd | 10 sjstats-0.19.0/sjstats/man/t_test.Rd |only sjstats-0.19.0/sjstats/man/table_values.Rd | 74 +- sjstats-0.19.0/sjstats/man/var_pop.Rd | 77 +- sjstats-0.19.0/sjstats/man/weight.Rd | 114 +-- sjstats-0.19.0/sjstats/man/weighted_se.Rd |only sjstats-0.19.0/sjstats/man/wilcoxon_test.Rd |only sjstats-0.19.0/sjstats/tests/testthat.R | 7 sjstats-0.19.0/sjstats/tests/testthat/_snaps |only sjstats-0.19.0/sjstats/tests/testthat/test-autoprior.R | 1 sjstats-0.19.0/sjstats/tests/testthat/test-chi_squared_test.R |only sjstats-0.19.0/sjstats/tests/testthat/test-kruskal_wallis_test.R |only sjstats-0.19.0/sjstats/tests/testthat/test-mann_whitney_test.R |only sjstats-0.19.0/sjstats/tests/testthat/test-t_test.R |only sjstats-0.19.0/sjstats/tests/testthat/test-wilcoxon_test.R |only sjstats-0.19.0/sjstats/tests/testthat/test-wtd.R | 44 - 95 files changed, 2015 insertions(+), 2586 deletions(-)
Title: NHDPlus Tools
Description: Tools for traversing and working with National Hydrography Dataset Plus (NHDPlus) data. All methods implemented in 'nhdplusTools' are available in the NHDPlus documentation available from the US Environmental Protection Agency <https://www.epa.gov/waterdata/basic-information>.
Author: David Blodgett [aut, cre] ,
Mike Johnson [aut] ,
Marc Weber [ctb] ,
Josh Erickson [ctb],
Lauren Koenig [ctb]
Maintainer: David Blodgett <dblodgett@usgs.gov>
Diff between nhdplusTools versions 1.0.0 dated 2023-10-02 and 1.1.0 dated 2024-05-14
nhdplusTools-1.0.0/nhdplusTools/man/get_huc12.Rd |only nhdplusTools-1.0.0/nhdplusTools/man/get_huc8.Rd |only nhdplusTools-1.1.0/nhdplusTools/DESCRIPTION | 12 nhdplusTools-1.1.0/nhdplusTools/MD5 | 76 - nhdplusTools-1.1.0/nhdplusTools/NAMESPACE | 11 nhdplusTools-1.1.0/nhdplusTools/NEWS.md | 22 nhdplusTools-1.1.0/nhdplusTools/R/A_nhdplusTools.R | 92 + nhdplusTools-1.1.0/nhdplusTools/R/arcrest_tools.R |only nhdplusTools-1.1.0/nhdplusTools/R/downloading_tools.R | 21 nhdplusTools-1.1.0/nhdplusTools/R/geoserver_tools.R | 183 +- nhdplusTools-1.1.0/nhdplusTools/R/get_hydro.R | 150 +- nhdplusTools-1.1.0/nhdplusTools/R/get_nhdplushr.R | 666 +++++----- nhdplusTools-1.1.0/nhdplusTools/R/get_nldi.R | 4 nhdplusTools-1.1.0/nhdplusTools/R/get_vaa.R | 2 nhdplusTools-1.1.0/nhdplusTools/R/index_nhdplus.R | 10 nhdplusTools-1.1.0/nhdplusTools/R/plot_nhdplus.R | 13 nhdplusTools-1.1.0/nhdplusTools/R/rescale_catchments.R | 4 nhdplusTools-1.1.0/nhdplusTools/build/partial.rdb |binary nhdplusTools-1.1.0/nhdplusTools/build/vignette.rds |binary nhdplusTools-1.1.0/nhdplusTools/inst/doc/get_3dhp_data.R |only nhdplusTools-1.1.0/nhdplusTools/inst/doc/get_3dhp_data.Rmd |only nhdplusTools-1.1.0/nhdplusTools/inst/doc/get_3dhp_data.html |only nhdplusTools-1.1.0/nhdplusTools/inst/doc/nhdplusTools.html | 129 - nhdplusTools-1.1.0/nhdplusTools/inst/doc/nhdplushr.html | 18 nhdplusTools-1.1.0/nhdplusTools/inst/doc/plot_nhdplus.R | 22 nhdplusTools-1.1.0/nhdplusTools/inst/doc/plot_nhdplus.Rmd | 500 +++---- nhdplusTools-1.1.0/nhdplusTools/inst/doc/plot_nhdplus.html | 60 nhdplusTools-1.1.0/nhdplusTools/man/download_nhdplusv2.Rd | 84 - nhdplusTools-1.1.0/nhdplusTools/man/get_3dhp.Rd |only nhdplusTools-1.1.0/nhdplusTools/man/get_characteristics_metadata.Rd | 2 nhdplusTools-1.1.0/nhdplusTools/man/get_gagesII.Rd | 82 - nhdplusTools-1.1.0/nhdplusTools/man/get_huc.Rd | 93 - nhdplusTools-1.1.0/nhdplusTools/man/get_nhdarea.Rd | 76 - nhdplusTools-1.1.0/nhdplusTools/man/get_waterbodies.Rd | 76 - nhdplusTools-1.1.0/nhdplusTools/man/nhdplusTools_cache_settings.Rd |only nhdplusTools-1.1.0/nhdplusTools/man/query_usgs_arcrest.Rd |only nhdplusTools-1.1.0/nhdplusTools/tests/testthat/helper.R | 80 - nhdplusTools-1.1.0/nhdplusTools/tests/testthat/test_02_subset_extras.R | 355 ++--- nhdplusTools-1.1.0/nhdplusTools/tests/testthat/test_03_get_functions.R | 35 nhdplusTools-1.1.0/nhdplusTools/tests/testthat/test_arcrest.R |only nhdplusTools-1.1.0/nhdplusTools/tests/testthat/test_get_3dhp.R |only nhdplusTools-1.1.0/nhdplusTools/tests/testthat/test_get_vaa.R | 3 nhdplusTools-1.1.0/nhdplusTools/tests/testthat/test_rescale_catchments.R | 225 +-- nhdplusTools-1.1.0/nhdplusTools/vignettes/get_3dhp_data.Rmd |only nhdplusTools-1.1.0/nhdplusTools/vignettes/plot_nhdplus.Rmd | 500 +++---- 45 files changed, 1924 insertions(+), 1682 deletions(-)
Title: Plot and Manipulate Multigraphs
Description: Functions to plot and manipulate multigraphs, signed and valued graphs, bipartite graphs, multilevel graphs, and Cayley graphs with various layout options.
Author: Antonio Rivero Ostoic [aut, cre]
Maintainer: Antonio Rivero Ostoic <multiplex@post.com>
Diff between multigraph versions 0.99 dated 2023-06-23 and 0.99-3 dated 2024-05-14
DESCRIPTION | 8 +-- MD5 | 22 ++++----- R/bmgraph.R | 27 ++++++----- R/frcd.R | 105 +++++++++++++++++++++------------------------- R/multigraph.R | 32 ++++++++------ man/bmgraph.Rd | 50 ++++++++------------- man/conc.Rd | 17 +++---- man/frcd.Rd | 12 +++-- man/mlgraph.Rd | 19 +++----- man/multigraph-package.Rd | 4 - man/multigraph.Rd | 37 ++++++++-------- man/stsm.Rd | 3 - 12 files changed, 165 insertions(+), 171 deletions(-)
Title: Interaction Difference Test for Prediction Models
Description: Provides functions to conduct a model-agnostic asymptotic hypothesis test for the identification of interaction effects in black-box machine learning models. The null hypothesis assumes that a given set of covariates does not contribute to interaction effects in the prediction model. The test statistic is based on the difference of variances of partial dependence functions (Friedman (2008) <doi:10.1214/07-AOAS148> and Welchowski (2022) <doi:10.1007/s13253-021-00479-7>) with respect to the original black-box predictions and the predictions under the null hypothesis. The hypothesis test can be applied to any black-box prediction model, and the null hypothesis of the test can be flexibly specified according to the research question of interest. Furthermore, the test is computationally fast to apply as the null distribution does not require resampling or refitting black-box prediction models.
Author: Thomas Welchowski [aut, cre]
Maintainer: Thomas Welchowski <welchow@imbie.meb.uni-bonn.de>
Diff between IADT versions 1.0.0 dated 2023-07-13 and 1.2.1 dated 2024-05-14
DESCRIPTION | 8 +-- MD5 | 16 +++--- R/IADT-package.R | 2 R/InteractionTest.R | 111 ++++++++++++++++++++++++++++++++++++++-------- R/PartialDependencePlot.R | 79 ++++++++++++++++++++++++-------- build/partial.rdb |binary man/IADT-package.Rd | 2 man/pdpEst_mpfr.Rd | 6 ++ man/testIAD_mpfr.Rd | 52 ++++++++++++++++++++- 9 files changed, 221 insertions(+), 55 deletions(-)
More information about CrossClustering at CRAN
Permanent link
More information about cpp11armadillo at CRAN
Permanent link
Title: Processing of Model Parameters
Description: Utilities for processing the parameters of various
statistical models. Beyond computing p values, CIs, and other indices
for a wide variety of models (see list of supported models using the
function 'insight::supported_models()'), this package implements
features like bootstrapping or simulating of parameters and models,
feature reduction (feature extraction and variable selection) as well
as functions to describe data and variable characteristics (e.g.
skewness, kurtosis, smoothness or distribution).
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Soeren Hoejsgaard [aut],
Brenton M. Wiernik [aut] ,
Zen J. Lau [ctb],
Vincent Arel-Bundock [ctb] ,
Jeffrey Girard [ctb] ,
Christina Maimone [re [...truncated...]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between parameters versions 0.21.6 dated 2024-03-18 and 0.21.7 dated 2024-05-14
DESCRIPTION | 26 +-- MD5 | 46 ++--- NEWS.md | 14 + R/compare_parameters.R | 2 R/dof.R | 29 +-- R/extract_random_variances.R | 78 +++++---- R/methods_lme4.R | 35 +++- R/methods_marginaleffects.R | 3 R/utils_format.R | 2 R/utils_model_parameters.R | 6 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 6 man/model_parameters.merMod.Rd | 36 ++++ tests/testthat/_snaps/glmmTMB-profile_CI.md | 4 tests/testthat/_snaps/glmmTMB.md | 169 ++----------------- tests/testthat/test-compare_parameters.R | 16 + tests/testthat/test-glmmTMB.R | 205 ++++++++++++++++++++---- tests/testthat/test-marginaleffects.R | 6 tests/testthat/test-model_parameters.coxme.R |only tests/testthat/test-model_parameters_df.R | 44 ++--- tests/testthat/test-p_function.R | 8 tests/testthat/test-p_value.R | 12 - tests/testthat/test-pretty_namesR.R |only tests/testthat/test-random_effects_ci-glmmTMB.R | 37 +++- 25 files changed, 479 insertions(+), 305 deletions(-)
Title: Multivariable Fractional Polynomials
Description: Fractional polynomials are used to represent curvature in regression models. A key reference is Royston and Altman, 1994.
Author: Georg Heinze [cre],
Gareth Ambler [aut],
Axel Benner [aut]
Maintainer: Georg Heinze <georg.heinze@meduniwien.ac.at>
Diff between mfp versions 1.5.4 dated 2023-07-19 and 1.5.4.1 dated 2024-05-14
DESCRIPTION | 8 MD5 | 14 build/vignette.rds |binary data/GBSG.rda |binary data/bodyfat.rda |binary inst/doc/mfp_vignette.R | 94 +- inst/doc/mfp_vignette.html | 1653 ++++++++++++++++++++++----------------------- man/predict.mfp.Rd | 2 8 files changed, 886 insertions(+), 885 deletions(-)
Title: Bayesian Functional Linear Regression with Sparse Step Functions
Description: A method for the Bayesian functional linear regression model (scalar-on-function),
including two estimators of the coefficient function and an estimator of its support.
A representation of the posterior distribution is also available. Grollemund P-M., Abraham C.,
Baragatti M., Pudlo P. (2019) <doi:10.1214/18-BA1095>.
Author: Paul-Marie Grollemund [aut, cre],
Isabelle Sanchez [ctr],
Meili Baragatti [ctr]
Maintainer: Paul-Marie Grollemund <paul_marie.grollemund@uca.fr>
Diff between bliss versions 1.0.5 dated 2024-04-18 and 1.1.0 dated 2024-05-14
bliss-1.0.5/bliss/R/Bliss_method_prior.R |only bliss-1.0.5/bliss/man/plot_bliss.Rd |only bliss-1.0.5/bliss/man/prior_Bliss.Rd |only bliss-1.1.0/bliss/DESCRIPTION | 18 bliss-1.1.0/bliss/MD5 | 76 +- bliss-1.1.0/bliss/NAMESPACE | 18 bliss-1.1.0/bliss/R/Auxiliary_and_graphics_functions.R | 305 +++------ bliss-1.1.0/bliss/R/Bliss_Gibbs_Sampler.R | 114 +-- bliss-1.1.0/bliss/R/Bliss_Simulated_Annealing.R | 241 ++++--- bliss-1.1.0/bliss/R/Bliss_method.R | 253 +++---- bliss-1.1.0/bliss/R/RcppExports.R | 8 bliss-1.1.0/bliss/R/Simulate_Data.R | 90 +- bliss-1.1.0/bliss/R/basic_functions.R | 536 +++++++++++----- bliss-1.1.0/bliss/R/data.R | 4 bliss-1.1.0/bliss/data/data1.rda |binary bliss-1.1.0/bliss/data/param1.rda |binary bliss-1.1.0/bliss/data/res_bliss1.rda |binary bliss-1.1.0/bliss/inst/doc/BlissIntro.R | 91 -- bliss-1.1.0/bliss/inst/doc/BlissIntro.Rmd | 95 -- bliss-1.1.0/bliss/inst/doc/BlissIntro.html | 250 ++----- bliss-1.1.0/bliss/man/BIC_model_choice.Rd | 11 bliss-1.1.0/bliss/man/Bliss_Gibbs_Sampler.Rd | 17 bliss-1.1.0/bliss/man/Bliss_Simulated_Annealing.Rd | 42 - bliss-1.1.0/bliss/man/bliss.Rd | 19 bliss-1.1.0/bliss/man/compute_beta_posterior_density.Rd | 24 bliss-1.1.0/bliss/man/compute_beta_sample.Rd | 25 bliss-1.1.0/bliss/man/compute_chains_info.Rd | 28 bliss-1.1.0/bliss/man/data1.Rd | 1 bliss-1.1.0/bliss/man/do_need_to_reduce.Rd |only bliss-1.1.0/bliss/man/fit_Bliss.Rd | 28 bliss-1.1.0/bliss/man/image_Bliss.Rd | 39 - bliss-1.1.0/bliss/man/lines_bliss.Rd | 25 bliss-1.1.0/bliss/man/post_treatment_bliss.Rd |only bliss-1.1.0/bliss/man/predict_bliss.Rd |only bliss-1.1.0/bliss/man/predict_bliss_distribution.Rd |only bliss-1.1.0/bliss/man/reduce_x.Rd |only bliss-1.1.0/bliss/man/res_bliss1.Rd | 3 bliss-1.1.0/bliss/man/sim.Rd | 2 bliss-1.1.0/bliss/man/sim_x.Rd | 30 bliss-1.1.0/bliss/man/support_estimation.Rd | 24 bliss-1.1.0/bliss/src/RcppExports.cpp | 19 bliss-1.1.0/bliss/src/bliss_rcpp_functions.cpp | 285 ++++---- bliss-1.1.0/bliss/vignettes/BlissIntro.Rmd | 95 -- 43 files changed, 1317 insertions(+), 1499 deletions(-)
Title: Additivity Tests in the Two Way Anova with Single Sub-Class
Numbers
Description: Implementation of the Tukey, Mandel, Johnson-Graybill, LBI, Tusell
and modified Tukey non-additivity tests.
Author: Marie Simeckova [aut], Thomas Rusch [aut], Petr Simecek [cre]
Maintainer: Petr Simecek <simecek@gmail.com>
Diff between additivityTests versions 1.1-4.1 dated 2022-06-24 and 1.1-4.2 dated 2024-05-14
DESCRIPTION | 7 MD5 | 40 +-- R/additivityTests-package.R | 4 R/print.aTest.R | 2 R/tusell.test.R | 2 README.md | 6 build/vignette.rds |binary data/Boik.rda |binary inst/doc/additivityTests-vignette.Rmd | 4 inst/doc/additivityTests-vignette.html | 402 ++++++++++++--------------------- man/Boik.Rd | 4 man/additivityTests-package.Rd | 25 +- man/critical.values.Rd | 6 man/johnson.graybill.test.Rd | 14 - man/lbi.test.Rd | 14 - man/mandel.test.Rd | 12 man/mtukey.test.Rd | 14 - man/print.aTest.Rd | 8 man/tukey.test.Rd | 14 - man/tusell.test.Rd | 14 - vignettes/additivityTests-vignette.Rmd | 4 21 files changed, 253 insertions(+), 343 deletions(-)
More information about additivityTests at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-29 1.8.0
2016-01-29 1.6.0
2016-01-15 1.5.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-30 1.2.1.1
2015-05-29 1.2.1
2015-04-11 1.1.1
2015-04-07 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-02-09 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-04-29 0.1.3
2024-02-29 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-09 1.5
2017-07-23 1.4
2017-05-25 1.3
2017-05-04 1.2
2017-05-01 1.1
2017-04-21 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-23 0.4.5
2015-03-11 0.4.4
2015-01-04 0.4.3
2014-09-14 0.4.2
2014-09-04 0.4.1
2014-05-27 0.4
2014-05-09 0.3
2014-04-04 0.2
2014-01-13 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-01-12 0.8.0
2021-12-14 0.7.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-07-29 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-23 1.1.1
2019-09-05 1.1
2015-10-05 1.0.4
2015-09-09 1.0.3
2015-09-08 1.0.2
2015-08-27 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-01 2.0.0
2020-09-07 1.1.0
2017-04-21 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-04 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-05 2.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-01 1.2
2017-04-03 1.1
2014-09-16 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-04-21 2.3.0
2023-11-07 2.1.0
2023-09-21 1.4.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-10 0.1.1
2023-11-02 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-02-21 3.5.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-09-30 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-02-13 0.2.1
2022-02-14 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-01 1.1.0
2016-06-01 1.0.2
2014-04-17 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-18 2.0.5
Title: Community Ecology Package
Description: Ordination methods, diversity analysis and other
functions for community and vegetation ecologists.
Author: Jari Oksanen [aut, cre],
Gavin L. Simpson [aut],
F. Guillaume Blanchet [aut],
Roeland Kindt [aut],
Pierre Legendre [aut],
Peter R. Minchin [aut],
R.B. O'Hara [aut],
Peter Solymos [aut],
M. Henry H. Stevens [aut],
Eduard Szoecs [aut],
Helene Wagner [a [...truncated...]
Maintainer: Jari Oksanen <jhoksane@gmail.com>
Diff between vegan versions 2.6-4 dated 2022-10-11 and 2.6-6 dated 2024-05-14
vegan-2.6-4/vegan/R/as.mcmc.oecosimu.R |only vegan-2.6-4/vegan/R/head.summary.cca.R |only vegan-2.6-4/vegan/R/humpfit.R |only vegan-2.6-4/vegan/R/predict.humpfit.R |only vegan-2.6-4/vegan/R/profile.humpfit.R |only vegan-2.6-4/vegan/man/capscale.Rd |only vegan-2.6-4/vegan/man/orditkplot.Rd |only vegan-2.6-6/vegan/DESCRIPTION | 8 vegan-2.6-6/vegan/MD5 | 234 ++---- vegan-2.6-6/vegan/NAMESPACE | 16 vegan-2.6-6/vegan/R/RsquareAdj.R | 9 vegan-2.6-6/vegan/R/adonis-deprecated.R | 4 vegan-2.6-6/vegan/R/adonis.R | 2 vegan-2.6-6/vegan/R/anova.cca.R | 16 vegan-2.6-6/vegan/R/anova.ccabyterm.R | 14 vegan-2.6-6/vegan/R/anova.ccalist.R | 2 vegan-2.6-6/vegan/R/anova.ccanull.R | 2 vegan-2.6-6/vegan/R/betadiver.R | 6 vegan-2.6-6/vegan/R/bioenv.default.R | 20 vegan-2.6-6/vegan/R/capscale.R | 2 vegan-2.6-6/vegan/R/dbrda.R | 2 vegan-2.6-6/vegan/R/decostand.R | 15 vegan-2.6-6/vegan/R/eigenvals.R | 4 vegan-2.6-6/vegan/R/envfit.default.R | 2 vegan-2.6-6/vegan/R/fisherfit.R | 12 vegan-2.6-6/vegan/R/inertcomp.R | 2 vegan-2.6-6/vegan/R/influence.cca.R | 2 vegan-2.6-6/vegan/R/intersetcor.R | 2 vegan-2.6-6/vegan/R/model.matrix.cca.R | 8 vegan-2.6-6/vegan/R/nestedbetasor.R | 4 vegan-2.6-6/vegan/R/oecosimu.R | 4 vegan-2.6-6/vegan/R/ordConstrained.R | 3 vegan-2.6-6/vegan/R/ordiR2step.R | 4 vegan-2.6-6/vegan/R/ordiYbar.R | 63 - vegan-2.6-6/vegan/R/ordiareatest.R | 2 vegan-2.6-6/vegan/R/ordiplot.R | 20 vegan-2.6-6/vegan/R/orditkplot.R | 8 vegan-2.6-6/vegan/R/permustats.R | 4 vegan-2.6-6/vegan/R/permutest.cca.R | 58 - vegan-2.6-6/vegan/R/plot.cca.R | 2 vegan-2.6-6/vegan/R/plot.orditkplot.R | 1 vegan-2.6-6/vegan/R/points.cca.R | 6 vegan-2.6-6/vegan/R/points.orditkplot.R | 4 vegan-2.6-6/vegan/R/predict.rda.R | 135 ++- vegan-2.6-6/vegan/R/predict.specaccum.R | 4 vegan-2.6-6/vegan/R/print.cca.R | 21 vegan-2.6-6/vegan/R/print.summary.cca.R | 60 - vegan-2.6-6/vegan/R/print.summary.isomap.R | 6 vegan-2.6-6/vegan/R/print.wcmdscale.R | 2 vegan-2.6-6/vegan/R/rareslope.R | 7 vegan-2.6-6/vegan/R/scores.cca.R | 14 vegan-2.6-6/vegan/R/scores.orditkplot.R | 1 vegan-2.6-6/vegan/R/scores.rda.R | 12 vegan-2.6-6/vegan/R/simper.R | 4 vegan-2.6-6/vegan/R/specslope.R | 6 vegan-2.6-6/vegan/R/stressplot.wcmdscale.R | 45 - vegan-2.6-6/vegan/R/summary.decorana.R | 9 vegan-2.6-6/vegan/R/summary.isomap.R | 3 vegan-2.6-6/vegan/R/summary.ordiellipse.R | 2 vegan-2.6-6/vegan/R/summary.prc.R | 9 vegan-2.6-6/vegan/R/text.cca.R | 5 vegan-2.6-6/vegan/R/text.orditkplot.R | 4 vegan-2.6-6/vegan/R/tolerance.cca.R | 4 vegan-2.6-6/vegan/R/tolerance.decorana.R | 2 vegan-2.6-6/vegan/R/vegan-defunct.R | 72 - vegan-2.6-6/vegan/R/vegdist.R | 2 vegan-2.6-6/vegan/R/vif.cca.R | 4 vegan-2.6-6/vegan/build/partial.rdb |binary vegan-2.6-6/vegan/build/vignette.rds |binary vegan-2.6-6/vegan/inst/NEWS.md | 168 ++++ vegan-2.6-6/vegan/inst/doc/FAQ-vegan.Rmd | 128 +-- vegan-2.6-6/vegan/inst/doc/FAQ-vegan.html | 802 +++++++-------------- vegan-2.6-6/vegan/inst/doc/decision-vegan.pdf |binary vegan-2.6-6/vegan/inst/doc/diversity-vegan.pdf |binary vegan-2.6-6/vegan/inst/doc/intro-vegan.R | 52 - vegan-2.6-6/vegan/inst/doc/intro-vegan.Rnw | 48 - vegan-2.6-6/vegan/inst/doc/intro-vegan.pdf |binary vegan-2.6-6/vegan/inst/doc/partitioning.pdf |binary vegan-2.6-6/vegan/man/BCI.Rd | 47 - vegan-2.6-6/vegan/man/RsquareAdj.Rd | 23 vegan-2.6-6/vegan/man/SSarrhenius.Rd | 2 vegan-2.6-6/vegan/man/add1.cca.Rd | 6 vegan-2.6-6/vegan/man/adonis.Rd | 36 vegan-2.6-6/vegan/man/anova.cca.Rd | 5 vegan-2.6-6/vegan/man/bioenv.Rd | 4 vegan-2.6-6/vegan/man/cca.object.Rd | 24 vegan-2.6-6/vegan/man/clamtest.Rd | 4 vegan-2.6-6/vegan/man/commsim.Rd | 12 vegan-2.6-6/vegan/man/dbrda.Rd |only vegan-2.6-6/vegan/man/decorana.Rd | 13 vegan-2.6-6/vegan/man/decostand.Rd | 33 vegan-2.6-6/vegan/man/deviance.cca.Rd | 4 vegan-2.6-6/vegan/man/eigenvals.Rd | 22 vegan-2.6-6/vegan/man/envfit.Rd | 2 vegan-2.6-6/vegan/man/eventstar.Rd | 4 vegan-2.6-6/vegan/man/goodness.metaMDS.Rd | 3 vegan-2.6-6/vegan/man/isomap.Rd | 3 vegan-2.6-6/vegan/man/nullmodel.Rd | 4 vegan-2.6-6/vegan/man/oecosimu.Rd | 2 vegan-2.6-6/vegan/man/ordiArrowTextXY.Rd | 2 vegan-2.6-6/vegan/man/ordiplot.Rd | 8 vegan-2.6-6/vegan/man/ordiresids.Rd | 23 vegan-2.6-6/vegan/man/ordistep.Rd | 34 vegan-2.6-6/vegan/man/pcnm.Rd | 2 vegan-2.6-6/vegan/man/plot.cca.Rd | 47 - vegan-2.6-6/vegan/man/prc.Rd | 2 vegan-2.6-6/vegan/man/predict.cca.Rd | 6 vegan-2.6-6/vegan/man/raupcrick.Rd | 2 vegan-2.6-6/vegan/man/stressplot.wcmdscale.Rd | 37 vegan-2.6-6/vegan/man/treedive.Rd | 4 vegan-2.6-6/vegan/man/varpart.Rd | 18 vegan-2.6-6/vegan/man/vegan-deprecated.Rd | 30 vegan-2.6-6/vegan/man/vegan-internal.Rd | 7 vegan-2.6-6/vegan/src/getF.c | 204 +++++ vegan-2.6-6/vegan/src/goffactor.c | 26 vegan-2.6-6/vegan/src/init.c | 9 vegan-2.6-6/vegan/src/monoMDS.f | 28 vegan-2.6-6/vegan/src/vegdist.c | 24 vegan-2.6-6/vegan/tests/cca-object-tests.Rout.save | 96 +- vegan-2.6-6/vegan/tests/vegan-tests.Rout.save | 101 +- vegan-2.6-6/vegan/vignettes/FAQ-vegan.Rmd | 128 +-- vegan-2.6-6/vegan/vignettes/intro-vegan.Rnw | 48 - 122 files changed, 1779 insertions(+), 1558 deletions(-)
More information about RcppLbfgsBlaze at CRAN
Permanent link
Title: R API Serialization
Description: Access to the internal R serialization code is provided for
use by other packages at the C function level by using the registration of
native function mechanism. Client packages simply include a single header
file RApiSerializeAPI.h provided by this package. This packages builds on
the Rhpc package by Ei-ji Nakama and Junji Nakano which also includes a
(partial) copy of the file src/main/serialize.c from R itself. The R Core
group is the original author of the serialization code made available by
this package.
Author: Dirk Eddelbuettel, Ei-ji Nakama, Junji Nakano, and R Core
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RApiSerialize versions 0.1.2 dated 2022-08-25 and 0.1.3 dated 2024-05-14
ChangeLog | 31 +++++++++++++++++++++++++ DESCRIPTION | 8 +++--- MD5 | 20 ++++++++-------- R/serialization.R | 6 ++-- inst/NEWS.Rd | 13 +++++++++- inst/include/RApiSerializeAPI.h | 12 ++++----- man/RApiSerialize-package.Rd | 8 ++++-- src/init.c | 7 ++--- src/serialize.cpp | 49 ++++++++++++++++++++++++++-------------- tests/simpleTests.R | 5 ++++ tests/simpleTests.Rout.save | 17 ++++++++++--- 11 files changed, 125 insertions(+), 51 deletions(-)
Title: Efficient Evaluation of Quadratic Forms
Description: A range of quadratic forms are evaluated, using efficient methods.
Unnecessary transposes are not performed. Complex values are handled
consistently.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between quadform versions 0.0-1 dated 2024-04-10 and 0.0-2 dated 2024-05-14
quadform-0.0-1/quadform/inst/quad_form_test.Rmd |only quadform-0.0-1/quadform/inst/quad_form_test.html |only quadform-0.0-2/quadform/DESCRIPTION | 6 quadform-0.0-2/quadform/MD5 | 22 +- quadform-0.0-2/quadform/NEWS.md |only quadform-0.0-2/quadform/R/quadform.R | 82 ++++--- quadform-0.0-2/quadform/README.md | 2 quadform-0.0-2/quadform/build/quadform.pdf |binary quadform-0.0-2/quadform/build/stage23.rdb |binary quadform-0.0-2/quadform/inst/quad3formtest.Rmd |only quadform-0.0-2/quadform/man/figures/quadform.png |binary quadform-0.0-2/quadform/man/quad.form.Rd | 228 ++++++++++++---------- quadform-0.0-2/quadform/tests/testthat/test_aaa.R | 23 +- quadform-0.0-2/quadform/tests/testthat/test_aab.R |only quadform-0.0-2/quadform/tests/testthat/test_aac.R |only 15 files changed, 199 insertions(+), 164 deletions(-)
Title: Identify Sites for Your Bird List
Description: A suite of tools to use the 'eBird' database
(<https://ebird.org/home/>) and APIs to compare users' species lists to
recent observations and create a report of the top sites to visit to see
new species.
Author: Jeffrey Oliver [aut, cre]
Maintainer: Jeffrey Oliver <jcoliver@arizona.edu>
Diff between lifeR versions 1.0.1 dated 2023-11-24 and 1.0.2 dated 2024-05-14
lifeR-1.0.1/lifeR/inst/doc/lifer-intro.pdf |only lifeR-1.0.1/lifeR/vignettes/lifer-intro.html |only lifeR-1.0.2/lifeR/DESCRIPTION | 14 +++++----- lifeR-1.0.2/lifeR/MD5 | 19 ++++++-------- lifeR-1.0.2/lifeR/NAMESPACE | 1 lifeR-1.0.2/lifeR/NEWS.md | 6 +++- lifeR-1.0.2/lifeR/R/RecentNearby.R | 35 +++++++++++---------------- lifeR-1.0.2/lifeR/build/vignette.rds |binary lifeR-1.0.2/lifeR/inst/doc/lifer-intro.R | 2 - lifeR-1.0.2/lifeR/inst/doc/lifer-intro.Rmd | 2 - lifeR-1.0.2/lifeR/inst/doc/lifer-intro.html |only lifeR-1.0.2/lifeR/vignettes/lifer-intro.Rmd | 2 - 12 files changed, 39 insertions(+), 42 deletions(-)
Title: Build a Package from Rmarkdown Files
Description: Use Rmarkdown First method to build your package. Start your
package with documentation, functions, examples and tests in the same
unique file. Everything can be set from the Rmarkdown template file
provided in your project, then inflated as a package. Inflating the
template copies the relevant chunks and sections in the appropriate
files required for package development.
Author: Sebastien Rochette [aut, cre] ,
ThinkR [cph]
Maintainer: Sebastien Rochette <sebastienrochettefr@gmail.com>
Diff between fusen versions 0.5.2 dated 2023-08-17 and 0.6.0 dated 2024-05-14
DESCRIPTION | 21 MD5 | 148 +- NAMESPACE | 88 - NEWS.md | 18 R/add_flat_template.R | 4 R/build_fusen_chunks.R | 4 R/deprecate_flat_file.R |only R/fill_description.R | 26 R/get_all_created_funs.R |only R/get_package_structure.R |only R/globals.R | 4 R/inflate-utils.R | 71 - R/inflate.R | 181 +- R/inflate_all.R | 68 - R/init_share_on_github.R | 9 R/load_flat_functions.R | 55 R/register_config_file.R | 337 +++-- R/rename_flat_file.R |only README.md | 267 ++-- build/vignette.rds |binary inst/doc/How-to-use-fusen.R | 4 inst/doc/How-to-use-fusen.Rmd | 3 inst/doc/How-to-use-fusen.html | 307 ++-- inst/doc/Maintain-packages-with-fusen.R | 12 inst/doc/Maintain-packages-with-fusen.Rmd | 19 inst/doc/Maintain-packages-with-fusen.html | 346 ++--- inst/doc/deal-with-a-fusen-flat-file.R |only inst/doc/deal-with-a-fusen-flat-file.Rmd |only inst/doc/deal-with-a-fusen-flat-file.html |only inst/doc/draw-a-tree-of-your-package-files-and-functions.R |only inst/doc/draw-a-tree-of-your-package-files-and-functions.Rmd |only inst/doc/draw-a-tree-of-your-package-files-and-functions.html |only inst/doc/inflate-all-your-flat-files.R | 6 inst/doc/inflate-all-your-flat-files.Rmd | 18 inst/doc/inflate-all-your-flat-files.html | 299 ++-- inst/doc/register-files-in-config.R | 14 inst/doc/register-files-in-config.Rmd | 40 inst/doc/register-files-in-config.html | 454 +++---- inst/doc/share-on-a-github-website.R | 6 inst/doc/share-on-a-github-website.Rmd | 31 inst/doc/share-on-a-github-website.html | 229 +-- inst/doc/tips-and-tricks.R | 8 inst/doc/tips-and-tricks.Rmd | 27 inst/doc/tips-and-tricks.html | 647 ++++------ inst/flat-template-additional.Rmd | 2 inst/flat-template-minimal_package.Rmd | 2 inst/flat-template-teaching.Rmd | 4 inst/rmarkdown/templates/additional/skeleton/skeleton.Rmd | 2 inst/the-dev-history.Rmd | 2 man/add_flat_template.Rd | 2 man/add_fusen_chunks.Rd | 4 man/check_not_registered_files.Rd | 3 man/deprecate_flat_file.Rd |only man/fusen-package.Rd | 2 man/get_all_created_funs.Rd |only man/get_package_structure.Rd |only man/inflate.Rd | 21 man/inflate_all.Rd | 46 man/init_share_on_github.Rd | 12 man/load_flat_functions.Rd | 4 man/register_all_to_config.Rd | 4 man/rename_flat_file.Rd |only tests/testthat.R | 8 tests/testthat/_snaps |only tests/testthat/config_fusen_register.yaml | 2 tests/testthat/test-add_flat_template.R | 92 + tests/testthat/test-deprecate_flat_file.R |only tests/testthat/test-fill_description.R | 9 tests/testthat/test-get_all_created_funs.R |only tests/testthat/test-get_package_structure.R |only tests/testthat/test-inflate-part1.R | 145 +- tests/testthat/test-inflate-part2.R | 118 + tests/testthat/test-inflate_all.R | 36 tests/testthat/test-inflate_all_utils.R | 6 tests/testthat/test-inflate_utils.R | 2 tests/testthat/test-register_config_file.R | 382 ++++- tests/testthat/test-rename_flat_file.R |only vignettes/How-to-use-fusen.Rmd | 3 vignettes/Maintain-packages-with-fusen.Rmd | 19 vignettes/deal-with-a-fusen-flat-file.Rmd |only vignettes/draw-a-tree-of-your-package-files-and-functions.Rmd |only vignettes/inflate-all-your-flat-files.Rmd | 18 vignettes/register-files-in-config.Rmd | 40 vignettes/share-on-a-github-website.Rmd | 31 vignettes/tips-and-tricks.Rmd | 27 85 files changed, 2729 insertions(+), 2090 deletions(-)
Title: Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters
Description: Estimates the time-varying reproduction number,
rate of spread, and doubling time using a range of open-source tools
(Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>), and
current best practices (Gostic et al. (2020)
<doi:10.1101/2020.06.18.20134858>). It aims to help users avoid some
of the limitations of naive implementations in a framework that is
informed by community feedback and is actively supported.
Author: Sam Abbott [aut] ,
Joel Hellewell [aut] ,
Katharine Sherratt [aut],
Katelyn Gostic [aut],
Joe Hickson [aut],
Hamada S. Badr [aut] ,
Michael DeWitt [aut] ,
James M. Azam [aut] ,
Robin Thompson [ctb],
Sophie Meakin [ctb],
James Munday [ctb],
Nikos Boss [...truncated...]
Maintainer: Sebastian Funk <sebastian.funk@lshtm.ac.uk>
Diff between EpiNow2 versions 1.5.0 dated 2024-05-10 and 1.5.1 dated 2024-05-14
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ inst/CITATION | 8 +++++++- 4 files changed, 17 insertions(+), 7 deletions(-)
Title: Interface with the United Nations Comtrade API
Description: Interface with and extract data from the United Nations 'Comtrade'
API <https://comtradeplus.un.org/>. 'Comtrade' provides country level shipping
data for a variety of commodities, these functions allow for easy API query
and data returned as a tidy data frame.
Author: Paul Bochtler [aut, cre, cph] ,
Harriet Goers [aut],
Chris Muir [aut],
Alicia Schep [rev] ,
Rafael Hellwig [rev] ,
Ernest Guevarra [rev] ,
Nicholas Potter [rev] ,
Juergen Amann [ctb]
Maintainer: Paul Bochtler <paulbochtler.gh@gmail.com>
Diff between comtradr versions 0.4.0.0 dated 2024-02-06 and 1.0.0 dated 2024-05-14
DESCRIPTION | 8 MD5 | 120 +- NAMESPACE | 1 NEWS.md | 87 + R/ct_build_request.R | 83 + R/ct_check_params.R | 189 ++- R/ct_get_bulk.R |only R/ct_get_data.R | 19 R/ct_perform_request.R | 17 R/ct_process_response.R | 74 + R/utils.R | 37 R/zzz.R | 7 README.md | 67 - build/vignette.rds |binary data/country_codes.rda |binary data/ct_pretty_cols.rda |binary inst/WORDLIST | 5 inst/doc/bulk_files.R |only inst/doc/bulk_files.Rmd |only inst/doc/bulk_files.html |only inst/doc/caching.R | 7 inst/doc/caching.Rmd | 21 inst/doc/caching.html | 30 inst/doc/comtradr.R | 4 inst/doc/comtradr.Rmd | 16 inst/doc/comtradr.html | 493 ++++------ inst/doc/large_data.Rmd | 11 inst/doc/large_data.html | 2 inst/extdata/cmd_b4.rds |binary inst/extdata/cmd_b5.rds |binary inst/extdata/cmd_eb.rds |binary inst/extdata/cmd_eb02.rds |binary inst/extdata/cmd_eb10.rds |binary inst/extdata/cmd_eb10s.rds |binary inst/extdata/cmd_h0.rds |only inst/extdata/cmd_h1.rds |only inst/extdata/cmd_h2.rds |only inst/extdata/cmd_h3.rds |only inst/extdata/cmd_h4.rds |only inst/extdata/cmd_h5.rds |only inst/extdata/cmd_h6.rds |only inst/extdata/cmd_hs.rds |binary inst/extdata/cmd_s1.rds |binary inst/extdata/cmd_s2.rds |binary inst/extdata/cmd_s3.rds |binary inst/extdata/cmd_s4.rds |binary inst/extdata/cmd_ss.rds |binary inst/extdata/customs.rds |binary inst/extdata/flow.rds |binary inst/extdata/list_of_datasets.rda |binary inst/extdata/mot.rds |binary inst/extdata/partner.rds |binary inst/extdata/reporter.rds |binary inst/extdata/vignette_data_10.rda |only inst/extdata/vignette_data_8.rda |only inst/extdata/vignette_data_9.rda |only man/comtradr-package.Rd | 2 man/ct_get_bulk.Rd |only tests/goods_bulk |only tests/testthat.R | 5 tests/testthat/goods/comtradeapi.un.org/data/v1/get/C/A/HS-5e2730.R | 83 + tests/testthat/goods_bulk_error |only tests/testthat/test-ct_build_request.R | 8 tests/testthat/test-ct_check_parameters.R | 28 tests/testthat/test-ct_get_bulk.R |only tests/testthat/test-utils.R | 9 vignettes/bulk_files.Rmd |only vignettes/caching.Rmd | 21 vignettes/comtradr.Rmd | 16 vignettes/large_data.Rmd | 11 70 files changed, 914 insertions(+), 567 deletions(-)
More information about clickableImageMap at CRAN
Permanent link
Title: Simulate a Bus Route Creel Survey of Anglers
Description: Simulate an angler population, sample the simulated population with a user-specified survey times, and calculate metrics from a bus route-type creel survey.
Author: Ranney Steven H. [aut, cre]
Maintainer: Ranney Steven H. <Steven.Ranney@gmail.com>
Diff between AnglerCreelSurveySimulation versions 1.0.2 dated 2018-03-13 and 1.0.3 dated 2024-05-14
AnglerCreelSurveySimulation-1.0.2/AnglerCreelSurveySimulation/R/create_plot_from_simulation.R |only AnglerCreelSurveySimulation-1.0.2/AnglerCreelSurveySimulation/R/plot_multiple_objects.R |only AnglerCreelSurveySimulation-1.0.2/AnglerCreelSurveySimulation/man/create_plot_from_simulation.Rd |only AnglerCreelSurveySimulation-1.0.2/AnglerCreelSurveySimulation/man/plot_multiple_objects.Rd |only AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/DESCRIPTION | 23 AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/MD5 | 56 AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/NAMESPACE | 27 AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/R/calculate_rse.R | 79 AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/R/conduct_multiple_surveys.R | 144 - AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/R/estimate_ehat_variance.R |only AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/R/get_total_values.R | 415 +-- AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/R/make_anglers.R | 150 - AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/R/simulate_bus_route.R | 353 +- AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/build/vignette.rds |binary AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/inst/CITATION | 27 AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/inst/doc/creel_survey_simulation.R | 392 +- AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/inst/doc/creel_survey_simulation.Rmd | 644 ++-- AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/inst/doc/creel_survey_simulation.html | 1378 ++++++---- AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/man/calculate_rse.Rd | 76 AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/man/conduct_multiple_surveys.Rd | 140 - AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/man/estimate_ehat_variance.Rd |only AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/man/get_total_values.Rd | 205 - AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/man/make_anglers.Rd | 105 AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/man/simulate_bus_route.Rd | 274 + AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/tests/testthat.R | 7 AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/tests/testthat/test_calculate_rse.R | 58 AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/tests/testthat/test_conduct_multiple_surveys.R | 48 AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/tests/testthat/test_estimate_ehat_variance.R |only AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/tests/testthat/test_get_total_values.R | 84 AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/tests/testthat/test_make_anglers.R | 74 AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/tests/testthat/test_simulate_bus_route.R | 107 AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/tests/testthat/testthat-problems.rds |only AnglerCreelSurveySimulation-1.0.3/AnglerCreelSurveySimulation/vignettes/creel_survey_simulation.Rmd | 644 ++-- 33 files changed, 3007 insertions(+), 2503 deletions(-)
More information about AnglerCreelSurveySimulation at CRAN
Permanent link
Title: Nearest Neighbor Descent Method for Approximate Nearest
Neighbors
Description: The Nearest Neighbor Descent method for finding approximate
nearest neighbors by Dong and co-workers (2010)
<doi:10.1145/1963405.1963487>. Based on the 'Python' package
'PyNNDescent' <https://github.com/lmcinnes/pynndescent>.
Author: James Melville [aut, cre, cph],
Vitalie Spinu [ctb],
Ralf Stubner [ctb]
Maintainer: James Melville <jlmelville@gmail.com>
Diff between rnndescent versions 0.1.5 dated 2024-04-18 and 0.1.6 dated 2024-05-14
DESCRIPTION | 6 MD5 | 47 ++-- NEWS.md | 14 + R/corrections.R | 8 R/rnndescent.R | 4 build/partial.rdb |binary build/vignette.rds |binary inst/doc/brute-force.html | 2 inst/doc/hubness.html | 5 inst/doc/metrics.html | 5 inst/doc/nearest-neighbor-descent.html | 5 inst/doc/querying-data.html | 5 inst/doc/random-partition-forests.html | 5 inst/doc/rnndescent.html | 5 inst/include/dqsample.h | 8 inst/include/rnndescent/random.h | 34 +-- inst/include/tdoann/distance.h | 318 ++++++++++++++---------------- inst/include/tdoann/distancebin.h | 49 +--- inst/include/tdoann/nngraph.h | 2 inst/include/tdoann/prepare.h | 2 inst/include/tdoann/sparse.h | 339 +++++++++++++++------------------ src/rnn_distance.h | 8 tests/testthat/test_binary.R |only tests/testthat/test_corrections.R |only tests/testthat/test_distance.R | 2 tests/testthat/test_sparse_search.R |only 26 files changed, 428 insertions(+), 445 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-03-13 2.0.0
2023-02-28 1.1.10
2022-12-12 1.1.9
2022-06-07 1.1.8
2022-04-13 1.1.7
2022-01-15 1.1.5
2021-12-13 1.1.4
2021-11-29 1.1.3
2021-11-17 1.1.2
2021-07-30 1.1.1
2021-07-16 1.1.0
2021-06-23 1.0.1
2021-05-16 1.0.0
2020-06-03 0.5.0
2019-11-02 0.4.0
2019-08-23 0.3.0
2019-07-10 0.2.0
2019-05-19 0.1.1
2019-05-09 0.1.0