Title: Species Distribution Modeling and Ecological Niche Modeling
Description: Implements species distribution modeling and ecological niche
modeling, including: bias correction, spatial cross-validation, model
evaluation, raster interpolation, biotic "velocity" (speed and
direction of movement of a "mass" represented by a raster), interpolating
across a time series of rasters, and use of spatially imprecise records.
The heart of the package is a set of "training" functions which
automatically optimize model complexity based number of available
occurrences. These algorithms include MaxEnt, MaxNet, boosted regression
trees/gradient boosting machines, generalized additive models,
generalized linear models, natural splines, and random forests. To enhance
interoperability with other modeling packages, no new classes are created.
The package works with 'PROJ6' geodetic objects and coordinate reference
systems.
Author: Adam B. Smith [cre, aut]
Maintainer: Adam B. Smith <adam.smith@mobot.org>
Diff between enmSdmX versions 1.1.5 dated 2024-05-16 and 1.1.6 dated 2024-06-13
DESCRIPTION | 17 +++++------ MD5 | 23 ++++++++------ NEWS.md | 5 ++- R/canada.r |only R/enmSdmX.r | 1 R/interpolateRasts.r | 6 +-- R/trainGAM.r | 6 +-- R/trainGLM.r | 6 +-- R/trainNS.r | 2 - inst/extdata/canada_level0_gadm41.gpkg |only man/canada.Rd |only man/customAlbers.Rd | 51 ++++++++++++--------------------- man/enmSdmX.Rd | 1 man/examples/customCRS_examples.r | 51 ++++++++++++--------------------- 14 files changed, 77 insertions(+), 92 deletions(-)
Title: Likelihood Based Inference
Description: Maximum likelihood estimation and likelihood ratio test are essential for modern statistics. This package supports in calculating likelihood based inference.
Reference: Pawitan Y. (2001, ISBN:0-19-850765-8).
Author: Kyun-Seop Bae [aut, cre, cph]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between LBI versions 0.1.1 dated 2024-05-10 and 0.1.2 dated 2024-06-13
DESCRIPTION | 6 +++--- MD5 | 14 ++++++++------ R/LRT.R | 6 +++--- inst/NEWS.Rd | 10 ++++++++-- inst/doc |only man/LIbin.Rd | 2 ++ man/LIpois.Rd | 2 +- man/LRT.Rd | 19 ++++++++++++++++++- man/macros |only 9 files changed, 43 insertions(+), 16 deletions(-)
Title: Panel Evaluation in Forensic Kinship Analysis
Description: Evaluate specific panels in different aspects: i) Simulation tools related to pedigree researches; ii) calculation for systemic effectiveness indicators, such as probability of exclusion (PE).
Author: Guanju Ma [aut, cre],
Shujin Li [ctb]
Maintainer: Guanju Ma <mache124@126.com>
Diff between KINSIMU versions 0.1.2 dated 2024-01-08 and 0.1.2-2 dated 2024-06-13
DESCRIPTION | 8 ++++---- MD5 | 11 +++++++---- NEWS.md | 5 ++++- R/KINSIMU-package.R |only build/vignette.rds |binary inst/CITATION |only inst/doc/Instruction_of_functions_of_R_package_KINSIMU.pdf |binary man/KINSIMU-package.Rd |only 8 files changed, 15 insertions(+), 9 deletions(-)
Title: Create Pharmacometric Models
Description: Provides a user interface to create or modify pharmacometric
models for various modeling and simulation software platforms.
Author: Sebastien Bihorel [cre, aut]
Maintainer: Sebastien Bihorel <sb.pmlab@gmail.com>
Diff between pmxcode versions 0.1.2 dated 2024-02-18 and 0.1.3 dated 2024-06-13
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/utils_mrgsolve.R | 4 ++-- R/utils_nonmem.R | 2 +- 5 files changed, 14 insertions(+), 10 deletions(-)
Title: Analyze, Process, Identify, and Share Raman and (FT)IR Spectra
Description: Raman and (FT)IR spectral analysis tool for plastic particles and
other environmental samples (Cowger et al. 2021,
<doi:10.1021/acs.analchem.1c00123>). With read_any(), Open Specy provides a
single function for reading individual, batch, or map spectral data files
like .asp, .csv, .jdx, .spc, .spa, .0, and .zip. process_spec() simplifies
processing spectra, including smoothing, baseline correction,
range restriction and flattening, intensity conversions, wavenumber
alignment, and min-max normalization. Spectra can be identified in batch
using an onboard reference library (Cowger et al. 2020,
<doi:10.1177/0003702820929064>) using match_spec(). A Shiny app is available
via run_app() or online at <https://openanalysis.org/openspecy/>.
Author: Win Cowger [cre, aut, dtc] ,
Zacharias Steinmetz [aut] ,
Nick Leong [aut] ,
Andrea Faltynkova [aut, dtc] ,
Hannah Sherrod [aut] ,
Andrew B Gray [ctb] ,
Hannah Hapich [ctb] ,
Jennifer Lynch [ctb, dtc] ,
Hannah De Frond [ctb, dtc] ,
Keenan Munno [ctb, [...truncated...]
Maintainer: Win Cowger <wincowger@gmail.com>
Diff between OpenSpecy versions 1.0.8 dated 2024-03-14 and 1.1.0 dated 2024-06-13
DESCRIPTION | 20 +- MD5 | 69 ++++----- NAMESPACE | 11 + NEWS.md | 16 ++ R/adj_intens.R | 8 - R/adj_wave.R |only R/as_OpenSpecy.R | 29 +-- R/conform_spec.R | 41 ++--- R/def_features.R | 269 +++++++++++++++++++++++++------------ R/io_spec.R | 26 +-- R/manage_na.R | 127 ++++++++--------- R/manage_spec.R | 100 ++++++++++++- R/match_spec.R | 255 +++++++++++++++++------------------ R/read_envi.R | 23 +-- R/read_ext.R | 33 ++-- R/read_multi.R | 79 +++++----- R/run_app.R | 4 R/sig_noise.R | 64 ++++---- R/smooth_intens.R | 157 ++++++++++----------- R/split_spec.R | 45 ++---- README.md | 6 inst/doc/sop.R | 6 inst/doc/sop.Rmd | 16 +- inst/doc/sop.html | 110 +++++++-------- man/OpenSpecy-package.Rd | 3 man/adj_wave.Rd |only man/as_OpenSpecy.Rd | 10 - man/def_features.Rd | 54 +++++++ man/manage_na.Rd | 17 +- man/manage_spec.Rd | 17 ++ man/sig_noise.Rd | 6 tests/testthat/test-adj_wave.R |only tests/testthat/test-def_features.R | 109 ++++++++++++++ tests/testthat/test-manage_lib.R | 14 - tests/testthat/test-manage_spec.R | 16 ++ tests/testthat/test-match_spec.R | 9 + vignettes/sop.Rmd | 16 +- 37 files changed, 1086 insertions(+), 699 deletions(-)
Title: Connecting Stream Mining Components Using Sockets and Web
Services
Description: Adds functionality to connect stream mining components from package stream using sockets and Web services. The package can be used create distributed workflows and create plumber-based Web services which can be deployed on most common cloud services.
Author: Michael Hahsler [aut, cre, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between streamConnect versions 0.0-3 dated 2024-06-12 and 0.0-4 dated 2024-06-13
DESCRIPTION | 8 - MD5 | 24 ++--- NEWS.md | 6 + R/DSC_WebService.R | 15 +-- R/DSD_ReadWebService.R | 7 - R/publish_DSD_via_Socket.R | 7 - README.md | 7 - inst/doc/connections.R | 7 - inst/doc/connections.Rmd | 9 - inst/doc/connections.html | 203 +++++++++++++++++++++++---------------------- man/DSC_WebService.Rd | 6 - man/DSD_ReadWebService.Rd | 5 - vignettes/connections.Rmd | 9 - 13 files changed, 161 insertions(+), 152 deletions(-)
Title: Phylogenetic Tools for Comparative Biology (and Other Things)
Description: A wide range of methods for phylogenetic analysis - concentrated in phylogenetic comparative biology, but also including numerous techniques for visualizing, analyzing, manipulating, reading or writing, and even inferring phylogenetic trees. Included among the functions in phylogenetic comparative biology are various for ancestral state reconstruction, model-fitting, and simulation of phylogenies and trait data. A broad range of plotting methods for phylogenies and comparative data include (but are not restricted to) methods for mapping trait evolution on trees, for projecting trees into phenotype space or a onto a geographic map, and for visualizing correlated speciation between trees. Lastly, numerous functions are designed for reading, writing, analyzing, inferring, simulating, and manipulating phylogenetic trees and comparative data. For instance, there are functions for computing consensus phylogenies from a set, for simulating phylogenetic trees and data under a range of models, [...truncated...]
Author: Liam J. Revell
Maintainer: Liam J. Revell <liam.revell@umb.edu>
Diff between phytools versions 2.1-1 dated 2024-01-09 and 2.3-0 dated 2024-06-13
DESCRIPTION | 16 ++--- MD5 | 38 ++++++++----- NAMESPACE | 29 +++++++--- R/asr.R | 125 +++++++++++++++++++++++++++++++++++++++++---- R/bounded_bm.R |only R/contMap.R | 23 ++++++-- R/cophylo.R | 20 +++++-- R/fitHRM.R | 17 ++++-- R/fitMk.R | 110 +++++++++++++++++++++++++++++++++------ R/fitThresh.R |only R/fitfnMk.R |only R/fitmultiBM.R |only R/mcmcMk.R | 3 - R/phenogram.R | 22 +++++-- R/plotFanTree.wTraits.R |only R/plotSimmap.R | 53 ++++++++++++------- R/plotTree.lollipop.R |only R/plotTree.wBars.R | 19 ++++-- R/utilities.R | 110 ++++++++++++++++++++------------------- man/bounded_bm.Rd |only man/fitMk.Rd | 15 +++-- man/fitThresh.Rd |only man/fitmultiBM.Rd |only man/plotTree.datamatrix.Rd | 41 +++++++++++++- man/plotTree.lollipop.Rd |only 25 files changed, 478 insertions(+), 163 deletions(-)
Title: Easily Apply Formats to Data
Description: Contains a set of functions that can be used to apply
formats to data frames or vectors. The package aims to provide
functionality similar to that of SAS® formats. Formats are assigned to
the format attribute on data frame columns. Then when the fdata()
function is called, a new data frame is created with the column data
formatted as specified. The package also contains a value() function
to create a user-defined format, similar to a SAS® user-defined format.
Author: David Bosak
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between fmtr versions 1.6.4 dated 2024-05-10 and 1.6.5 dated 2024-06-13
DESCRIPTION | 8 +-- MD5 | 28 +++++----- NEWS.md | 4 + R/fapply.R | 86 ++++++++++++++++++++++---------- R/fmtr.R | 3 + R/utilities.R | 53 ++++++++++++++++++++ inst/doc/fmtr-convenience.html | 4 - inst/doc/fmtr-fapply.html | 4 - inst/doc/fmtr-fapply2.html | 4 - inst/doc/fmtr-fcat.html | 4 - inst/doc/fmtr-fdata.html | 4 - inst/doc/fmtr-helpers.html | 4 - man/FormattingStrings.Rd | 3 + tests/testthat/test-fapply.R | 105 ++++++++++++++++++++++++++++++++++++++++ tests/testthat/test-utilities.R | 66 +++++++++++++++++++++++++ 15 files changed, 324 insertions(+), 56 deletions(-)
Title: Policy Learning via Doubly Robust Empirical Welfare Maximization
over Trees
Description: Learn optimal policies via doubly robust empirical
welfare maximization over trees. Given doubly robust reward estimates, this package
finds a rule-based treatment prescription policy, where the policy takes the form of
a shallow decision tree that is globally (or close to) optimal.
Author: Erik Sverdrup [aut, cre],
Ayush Kanodia [aut],
Zhengyuan Zhou [aut],
Susan Athey [aut],
Stefan Wager [aut]
Maintainer: Erik Sverdrup <erik.sverdrup@monash.edu>
Diff between policytree versions 1.2.2 dated 2023-06-23 and 1.2.3 dated 2024-06-13
DESCRIPTION | 12 ++++++------ LICENSE |only MD5 | 9 +++++---- src/Rcppbindings.cpp | 16 ---------------- src/tree_search.cpp | 18 +++--------------- src/tree_search.h | 16 ---------------- 6 files changed, 14 insertions(+), 57 deletions(-)
Title: Fast and Efficient Graph Data Structures
Description: Empower your data analysis with 'orbweaver', an R package
designed for effortless construction and analysis of graph data
structures. With 'orbweaver', you can seamlessly build and manipulate
graph structures, leveraging its high-performance methods for
filtering, joining, and mutating data within the R environment.
Drawing inspiration from the efficiency of the 'data.table'
package, 'orbweaver' ensures that mutations and changes to
the graph are performed in place, streamlining your
workflow for optimal productivity.
Author: ixpantia, SRL [cph],
Andres Quintero [aut, cre],
The authors of the dependency Rust crates [ctb]
Maintainer: Andres Quintero <andres@ixpantia.com>
Diff between orbweaver versions 0.0.3 dated 2023-11-24 and 0.10.2 dated 2024-06-13
orbweaver-0.0.3/orbweaver/R/graph.R |only orbweaver-0.0.3/orbweaver/man/add_child.Rd |only orbweaver-0.0.3/orbweaver/man/add_node.Rd |only orbweaver-0.0.3/orbweaver/man/as.list.AcyclicGraph.Rd |only orbweaver-0.0.3/orbweaver/man/as_graph.Rd |only orbweaver-0.0.3/orbweaver/man/as_graph.data.frame.Rd |only orbweaver-0.0.3/orbweaver/man/clone_graph.Rd |only orbweaver-0.0.3/orbweaver/man/find_least_common_parents.Rd |only orbweaver-0.0.3/orbweaver/man/find_leaves.Rd |only orbweaver-0.0.3/orbweaver/man/find_roots.Rd |only orbweaver-0.0.3/orbweaver/man/get_children.Rd |only orbweaver-0.0.3/orbweaver/man/get_parents.Rd |only orbweaver-0.0.3/orbweaver/man/new_graph.Rd |only orbweaver-0.0.3/orbweaver/man/search_for_node.Rd |only orbweaver-0.0.3/orbweaver/src/config |only orbweaver-0.0.3/orbweaver/src/rust/vendor.sh |only orbweaver-0.0.3/orbweaver/tests/testthat/test-as_graph.R |only orbweaver-0.0.3/orbweaver/tests/testthat/test-find_least_common_parents.R |only orbweaver-0.0.3/orbweaver/tests/testthat/test-get_parents.R |only orbweaver-0.10.2/orbweaver/DESCRIPTION | 17 orbweaver-0.10.2/orbweaver/LICENSE.note | 160 ++ orbweaver-0.10.2/orbweaver/MD5 | 92 + orbweaver-0.10.2/orbweaver/NAMESPACE | 69 - orbweaver-0.10.2/orbweaver/R/asserts.R |only orbweaver-0.10.2/orbweaver/R/bin.R |only orbweaver-0.10.2/orbweaver/R/builder.R |only orbweaver-0.10.2/orbweaver/R/children.R |only orbweaver-0.10.2/orbweaver/R/errors.R |only orbweaver-0.10.2/orbweaver/R/extendr-wrappers.R | 111 + orbweaver-0.10.2/orbweaver/R/find_path.R |only orbweaver-0.10.2/orbweaver/R/get_leaves.R |only orbweaver-0.10.2/orbweaver/R/get_roots.R |only orbweaver-0.10.2/orbweaver/R/has_children.R |only orbweaver-0.10.2/orbweaver/R/has_parents.R |only orbweaver-0.10.2/orbweaver/R/least_common_parents.R |only orbweaver-0.10.2/orbweaver/R/length.R |only orbweaver-0.10.2/orbweaver/R/nodes.R |only orbweaver-0.10.2/orbweaver/R/parents.R |only orbweaver-0.10.2/orbweaver/R/print.R |only orbweaver-0.10.2/orbweaver/R/subset.R |only orbweaver-0.10.2/orbweaver/configure |only orbweaver-0.10.2/orbweaver/configure.win |only orbweaver-0.10.2/orbweaver/inst/AUTHORS | 91 + orbweaver-0.10.2/orbweaver/man/add_edge.Rd |only orbweaver-0.10.2/orbweaver/man/add_path.Rd |only orbweaver-0.10.2/orbweaver/man/build_acyclic.Rd |only orbweaver-0.10.2/orbweaver/man/build_directed.Rd |only orbweaver-0.10.2/orbweaver/man/children.Rd |only orbweaver-0.10.2/orbweaver/man/find_all_paths.Rd | 15 orbweaver-0.10.2/orbweaver/man/find_path.Rd |only orbweaver-0.10.2/orbweaver/man/get_all_leaves.Rd |only orbweaver-0.10.2/orbweaver/man/get_all_roots.Rd |only orbweaver-0.10.2/orbweaver/man/get_leaves_under.Rd |only orbweaver-0.10.2/orbweaver/man/get_roots_over.Rd |only orbweaver-0.10.2/orbweaver/man/graph_builder.Rd |only orbweaver-0.10.2/orbweaver/man/graph_from_bin.Rd |only orbweaver-0.10.2/orbweaver/man/graph_to_bin.Rd |only orbweaver-0.10.2/orbweaver/man/has_children.Rd |only orbweaver-0.10.2/orbweaver/man/has_parents.Rd |only orbweaver-0.10.2/orbweaver/man/least_common_parents.Rd |only orbweaver-0.10.2/orbweaver/man/nodes.Rd |only orbweaver-0.10.2/orbweaver/man/parents.Rd |only orbweaver-0.10.2/orbweaver/man/populate_edges.Rd |only orbweaver-0.10.2/orbweaver/src/Makevars | 42 orbweaver-0.10.2/orbweaver/src/Makevars.win | 56 orbweaver-0.10.2/orbweaver/src/rust/Cargo.lock | 592 +++++++++- orbweaver-0.10.2/orbweaver/src/rust/Cargo.toml | 23 orbweaver-0.10.2/orbweaver/src/rust/Makefile |only orbweaver-0.10.2/orbweaver/src/rust/src/from_dataframe.rs |only orbweaver-0.10.2/orbweaver/src/rust/src/lib.rs | 457 ++++--- orbweaver-0.10.2/orbweaver/src/rust/src/macros.rs |only orbweaver-0.10.2/orbweaver/src/rust/vendor-config.toml |only orbweaver-0.10.2/orbweaver/src/rust/vendor.tar.xz |binary orbweaver-0.10.2/orbweaver/tests/testthat/test-add_path.R |only orbweaver-0.10.2/orbweaver/tests/testthat/test-bin.R |only orbweaver-0.10.2/orbweaver/tests/testthat/test-builder.R |only orbweaver-0.10.2/orbweaver/tests/testthat/test-find_path.R |only orbweaver-0.10.2/orbweaver/tests/testthat/test-get-roots-leaves.R |only orbweaver-0.10.2/orbweaver/tests/testthat/test-least-common-parents.R |only orbweaver-0.10.2/orbweaver/tests/testthat/test-length.R |only orbweaver-0.10.2/orbweaver/tests/testthat/test-subset.R |only 81 files changed, 1364 insertions(+), 361 deletions(-)
Title: Multivariate Kernel Density Estimation with Vine Copulas
Description: Implements the vine copula based kernel density estimator of
Nagler and Czado (2016) <doi:10.1016/j.jmva.2016.07.003>. The estimator does
not suffer from the curse of dimensionality and is therefore well suited for
high-dimensional applications.
Author: Thomas Nagler [aut, cre]
Maintainer: Thomas Nagler <mail@tnagler.com>
Diff between kdevine versions 0.4.4 dated 2022-10-18 and 0.4.5 dated 2024-06-13
DESCRIPTION | 9 +++++---- MD5 | 8 ++++---- R/kdevine-package.R | 3 +-- man/kdevine-package.Rd | 8 ++++++++ src/evaluators.cpp | 23 +++++++++++++---------- 5 files changed, 31 insertions(+), 20 deletions(-)
Title: Bindings to the 'Geospatial Data Abstraction Library' Raster API
Description: Interface to the Raster API of the 'Geospatial Data Abstraction
Library' ('GDAL', <https://gdal.org>). Bindings are implemented in an
exposed C++ class encapsulating a 'GDALDataset' and its raster band
objects, along with several stand-alone functions. These support manual
creation of uninitialized datasets, creation from existing raster as
template, read/set dataset parameters, low level I/O, color tables, raster
attribute tables, virtual raster (VRT), and 'gdalwarp' wrapper for
reprojection and mosaicing. Includes 'GDAL' algorithms ('dem_proc()',
'polygonize()', 'rasterize()', etc.), and functions for coordinate
transformation and spatial reference systems. Calling signatures resemble
the native C, C++ and Python APIs provided by the 'GDAL' project. Includes
raster 'calc()' to evaluate a given R expression on a layer or stack of
layers, with pixel x/y available as variables in the expression; and raster
'combine()' to identify and count unique pixel combinations across multiple [...truncated...]
Author: Chris Toney [aut, cre] ,
Michael D. Sumner [ctb],
Frank Warmerdam [ctb, cph] ,
Even Rouault [ctb, cph] ,
Marius Appel [ctb, cph] ,
Daniel James [ctb, cph] ,
Peter Dimov [ctb, cph]
Maintainer: Chris Toney <chris.toney@usda.gov>
Diff between gdalraster versions 1.11.0 dated 2024-06-03 and 1.11.1 dated 2024-06-13
DESCRIPTION | 6 MD5 | 137 +++---- NEWS.md | 34 + R/RcppExports.R | 175 +++++---- R/gdal_helpers.R | 64 +++ R/gdal_rat.R | 2 R/gdalraster.R | 14 R/gdalraster_proc.R | 12 R/ogr_define.R | 2 R/ogr_manage.R | 2 R/vsifile.R | 34 + configure | 18 configure.ac | 2 inst/doc/gdal-config-quick-ref.Rmd | 9 inst/doc/gdal-config-quick-ref.html | 78 ++-- inst/doc/raster-api-tutorial.html | 28 - inst/doc/raster-attribute-tables.html | 106 ++--- man/GDALRaster-class.Rd | 14 man/VSIFile-class.Rd | 35 + man/addFilesInZip.Rd | 2 man/apply_geotransform.Rd |only man/bandCopyWholeRaster.Rd | 2 man/buildRAT.Rd | 2 man/buildVRT.Rd | 2 man/calc.Rd | 2 man/combine.Rd | 2 man/copyDatasetFiles.Rd | 2 man/create.Rd | 2 man/createCopy.Rd | 2 man/deleteDataset.Rd | 2 man/dem_proc.Rd | 2 man/fillNodata.Rd | 2 man/footprint.Rd | 2 man/gdalraster-package.Rd | 5 man/ogr_define.Rd | 2 man/ogr_manage.Rd | 2 man/polygonize.Rd | 2 man/rasterFromRaster.Rd | 2 man/rasterize.Rd | 2 man/renameDataset.Rd | 4 man/sieveFilter.Rd | 2 man/translate.Rd | 2 man/vsi_curl_clear_cache.Rd | 6 man/vsi_unlink.Rd | 2 man/vsi_unlink_batch.Rd | 4 man/warp.Rd | 2 src/RcppExports.cpp | 639 +++++++++++++++++----------------- src/cmb_table.cpp | 7 src/cmb_table.h | 20 - src/gdal_exp.cpp | 247 ++++++++----- src/gdal_vsi.cpp | 62 +-- src/gdalraster.cpp | 252 ++++++------- src/gdalraster.h | 98 ++--- src/geos_wkt.cpp | 146 +++---- src/geos_wkt.h | 61 +-- src/ogr_util.cpp | 120 +++--- src/ogr_util.h | 74 ++- src/progress_r.cpp | 9 src/rcpp_util.cpp | 16 src/rcpp_util.h | 24 - src/running_stats.cpp | 1 src/running_stats.h | 15 src/transform.cpp | 22 - src/vsifile.cpp | 10 src/vsifile.h | 4 src/wkt_conv.cpp | 11 tests/testthat/test-VSIFile-class.R | 18 tests/testthat/test-gdal_exp.R | 30 + tests/testthat/test-ogr_manage.R | 15 vignettes/gdal-config-quick-ref.Rmd | 9 70 files changed, 1551 insertions(+), 1194 deletions(-)
Title: D-Score for Child Development
Description: The D-score summarizes the child's performance on a set of
milestones into a single number. The package implements four Rasch model
keys to convert milestone scores into a D-score. It provides tools to
calculate the D-score and its precision from the child's milestone scores,
to convert the D-score into the Development-for-Age Z-score (DAZ)
using age-conditional references, and to map milestone names into a
generic 9-position item naming convention.
Author: Stef van Buuren [cre, aut],
Iris Eekhout [aut],
Arjan Huizing [aut]
Maintainer: Stef van Buuren <stef.vanbuuren@tno.nl>
Diff between dscore versions 1.8.0 dated 2023-01-20 and 1.9.0 dated 2024-06-13
DESCRIPTION | 29 - MD5 | 118 +++--- NAMESPACE | 7 NEWS.md | 51 ++ R/RcppExports.R | 10 R/builtin_itembank.R | 56 +-- R/builtin_itemtable.R | 33 - R/builtin_keys.R |only R/builtin_references.R | 26 - R/count_mu.R | 80 +++- R/daz.R | 158 +++++--- R/decompose_itemnames.R | 2 R/dscore-package.R | 44 +- R/dscore.R | 429 +++++++++++++---------- R/get_age_equivalent.R | 60 +-- R/get_itemtable.R | 47 +- R/get_labels.R | 1 R/get_reference.R | 55 ++- R/get_tau.R | 10 R/gsample.R | 4 R/import.R | 10 R/internal.R | 153 +++++--- R/rename_gcdg_gsed.R | 34 - R/set_default.R |only README.md | 85 ++-- build/vignette.rds |binary data/builtin_itembank.rda |binary data/builtin_keys.rda |only data/builtin_references.rda |binary inst/CITATION | 19 - inst/doc/getting_started.R | 88 ++-- inst/doc/getting_started.Rmd | 126 +++---- inst/doc/getting_started.html | 289 ++++++++-------- inst/doc/scoring_GSED.R | 42 +- inst/doc/scoring_GSED.Rmd | 134 +++---- inst/doc/scoring_GSED.html | 612 +++++++++++++++++----------------- man/builtin_itembank.Rd | 27 - man/builtin_itemtable.Rd | 22 - man/builtin_keys.Rd |only man/builtin_references.Rd | 17 man/calculate_posterior.Rd | 4 man/count_mu.Rd |only man/count_mu_dutch.Rd | 4 man/count_mu_gcdg.Rd | 4 man/count_mu_phase1.Rd | 5 man/count_mu_preliminary_standards.Rd |only man/daz.Rd | 76 ++-- man/decompose_itemnames.Rd | 2 man/dscore-package.Rd | 98 +++-- man/dscore.Rd | 227 +++++++----- man/get_age_equivalent.Rd | 49 +- man/get_reference.Rd | 47 ++ man/get_tau.Rd | 32 - man/posterior.Rd | 4 man/sample_hf.Rd | 4 src/Makevars | 5 src/Makevars.win | 5 src/RcppExports.cpp | 18 - src/dscore.cpp | 9 tests/testthat/test-dscore.R | 191 +++++++--- vignettes/getting_started.Rmd | 126 +++---- vignettes/references.bib | 10 vignettes/scoring_GSED.Rmd | 134 +++---- 63 files changed, 2258 insertions(+), 1674 deletions(-)
Title: Fit, Simulate, and Diagnose Hierarchical Exponential-Family
Models for Big Networks
Description: A toolbox for analyzing and simulating large networks based on hierarchical exponential-family random graph models (HERGMs).'bigergm' implements the estimation for large networks efficiently building on the 'lighthergm' and 'hergm' packages. Moreover, the package contains tools for simulating networks with local dependence to assess the goodness-of-fit.
Author: Cornelius Fritz [aut, cre],
Shota Komatsu [aut],
Juan Nelson Martinez Dahbura [aut],
Takanori Nishida [aut],
Angelo Mele [aut],
Michael Schweinberger [aut]
Maintainer: Cornelius Fritz <corneliusfritz2010@gmail.com>
Diff between bigergm versions 1.2.0 dated 2024-06-11 and 1.2.1 dated 2024-06-13
DESCRIPTION | 12 +- MD5 | 36 +++--- R/bigergm.R | 1 R/data.R | 71 +++++++++--- R/gof.bigergm.R | 148 +++++++++++++++++++++++-- R/preprocess.R | 3 R/simulate_bigergm.R | 25 ++-- data/state_twitter.rda |only inst/doc/bigergm.R | 10 + inst/doc/bigergm.Rmd | 10 + man/bali.Rd | 6 - man/bunt.Rd | 6 - man/kapferer.Rd | 6 - man/reed.Rd | 10 - man/rice.Rd | 6 - man/state_twitter.Rd |only man/toyNet.Rd | 4 tests/testthat/test-gof.R | 262 ++++++++++++++++++++++++++++++++++++++++++++- vignettes/bigergm.Rmd | 10 + vignettes/bigergm.html | 265 +++++++++++++++++++++++----------------------- 20 files changed, 651 insertions(+), 240 deletions(-)
Title: Bayesian Inference for Factor Modeling
Description: Collection of procedures to perform Bayesian analysis on a variety
of factor models. Currently, it includes: "Bayesian Exploratory Factor
Analysis" (befa) from G. Conti, S. Frühwirth-Schnatter, J.J. Heckman,
R. Piatek (2014) <doi:10.1016/j.jeconom.2014.06.008>, an approach to
dedicated factor analysis with stochastic search on the structure of the
factor loading matrix. The number of latent factors, as well as the
allocation of the manifest variables to the factors, are not fixed a priori
but determined during MCMC sampling.
Author: Remi Piatek [aut, cre]
Maintainer: Remi Piatek <remi.piatek@gmail.com>
Diff between BayesFM versions 0.1.5 dated 2021-11-19 and 0.1.7 dated 2024-06-13
BayesFM-0.1.5/BayesFM/NEWS |only BayesFM-0.1.5/BayesFM/R/BayesFM.R |only BayesFM-0.1.5/BayesFM/README |only BayesFM-0.1.5/BayesFM/src/befa.f95 |only BayesFM-0.1.5/BayesFM/src/covariates.f95 |only BayesFM-0.1.5/BayesFM/src/covmat_block_invwishart.f95 |only BayesFM-0.1.5/BayesFM/src/factor_normal.f95 |only BayesFM-0.1.5/BayesFM/src/factor_normal_block.f95 |only BayesFM-0.1.5/BayesFM/src/global.f95 |only BayesFM-0.1.5/BayesFM/src/indicators_dedic.f95 |only BayesFM-0.1.5/BayesFM/src/loading_idioprec.f95 |only BayesFM-0.1.5/BayesFM/src/matrix.f95 |only BayesFM-0.1.5/BayesFM/src/mcmc_progress.f95 |only BayesFM-0.1.5/BayesFM/src/mda.f95 |only BayesFM-0.1.5/BayesFM/src/measurement.f95 |only BayesFM-0.1.5/BayesFM/src/probability.f95 |only BayesFM-0.1.5/BayesFM/src/simul_nfac_prior.f95 |only BayesFM-0.1.7/BayesFM/DESCRIPTION | 8 +-- BayesFM-0.1.7/BayesFM/MD5 | 45 +++++++++--------- BayesFM-0.1.7/BayesFM/NEWS.md |only BayesFM-0.1.7/BayesFM/R/BayesFM-package.R |only BayesFM-0.1.7/BayesFM/R/print.befa.R | 2 BayesFM-0.1.7/BayesFM/R/summary.befa.R | 2 BayesFM-0.1.7/BayesFM/R/zzz.R |only BayesFM-0.1.7/BayesFM/README.md |only BayesFM-0.1.7/BayesFM/build/partial.rdb |binary BayesFM-0.1.7/BayesFM/man/BayesFM.Rd | 3 - BayesFM-0.1.7/BayesFM/src/befa.f90 |only BayesFM-0.1.7/BayesFM/src/covariates.f90 |only BayesFM-0.1.7/BayesFM/src/covmat_block_invwishart.f90 |only BayesFM-0.1.7/BayesFM/src/factor_normal.f90 |only BayesFM-0.1.7/BayesFM/src/factor_normal_block.f90 |only BayesFM-0.1.7/BayesFM/src/global.f90 |only BayesFM-0.1.7/BayesFM/src/indicators_dedic.f90 |only BayesFM-0.1.7/BayesFM/src/loading_idioprec.f90 |only BayesFM-0.1.7/BayesFM/src/matrix.f90 |only BayesFM-0.1.7/BayesFM/src/mcmc_progress.f90 |only BayesFM-0.1.7/BayesFM/src/mda.f90 |only BayesFM-0.1.7/BayesFM/src/measurement.f90 |only BayesFM-0.1.7/BayesFM/src/probability.f90 |only BayesFM-0.1.7/BayesFM/src/simul_nfac_prior.f90 |only 41 files changed, 31 insertions(+), 29 deletions(-)
Title: Temporally Regularized Matrix Factorization
Description: Functions to estimate temporally regularized matrix factorizations (TRMF) for forecasting and imputing values in short but high-dimensional time series. Uses regularized alternating least squares to compute the factorization, allows for several types of constraints on matrix factors and natively handles weighted and missing data.
Author: Chad Hammerquist [aut, cre],
Scentsy Inc [cph]
Maintainer: Chad Hammerquist <chammerquist@scentsy.com>
Diff between TRMF versions 0.1.5 dated 2021-08-16 and 0.2.1 dated 2024-06-13
TRMF-0.1.5/TRMF/man/TRMF_coefficients.Rd |only TRMF-0.1.5/TRMF/man/TRMF_es.Rd |only TRMF-0.2.1/TRMF/DESCRIPTION | 6 TRMF-0.2.1/TRMF/MD5 | 41 +-- TRMF-0.2.1/TRMF/NAMESPACE | 2 TRMF-0.2.1/TRMF/NEWS.md | 20 + TRMF-0.2.1/TRMF/R/ConstraintMatrices.R | 40 +-- TRMF-0.2.1/TRMF/R/InternalFunctions.R | 105 +++++-- TRMF-0.2.1/TRMF/R/Methods.R | 59 +++- TRMF-0.2.1/TRMF/R/TRMF.R | 260 +++++++------------ TRMF-0.2.1/TRMF/build/vignette.rds |binary TRMF-0.2.1/TRMF/inst/doc/TRMF-package.Rmd | 54 ++-- TRMF-0.2.1/TRMF/inst/doc/TRMF-package.html | 381 ++++++++++++++++++++++------- TRMF-0.2.1/TRMF/man/TRMF_ar.Rd | 3 TRMF-0.2.1/TRMF/man/TRMF_columns.Rd |only TRMF-0.2.1/TRMF/man/TRMF_seasonal.Rd | 9 TRMF-0.2.1/TRMF/man/TRMF_trend.Rd | 4 TRMF-0.2.1/TRMF/man/coef.TRMF.Rd | 2 TRMF-0.2.1/TRMF/man/components.TRMF.Rd | 8 TRMF-0.2.1/TRMF/man/create_TRMF.Rd | 5 TRMF-0.2.1/TRMF/man/retrain.Rd | 11 TRMF-0.2.1/TRMF/man/train_TRMF.Rd | 12 TRMF-0.2.1/TRMF/vignettes/TRMF-package.Rmd | 54 ++-- 23 files changed, 670 insertions(+), 406 deletions(-)
Title: A Data Interface Between 'GAMS' and R
Description: Read, analyze, modify, and write 'GAMS' (General Algebraic
Modeling System) data. The main focus of 'gamstransfer' is the
highly efficient transfer of data with 'GAMS' <https://www.gams.com/>,
while keeping these operations as simple as possible for the user. The
transfer of data usually takes place via an intermediate GDX (GAMS Data
Exchange) file. Additionally, 'gamstransfer' provides utility
functions to get an overview of 'GAMS' data and to check its validity.
Author: Atharv Bhosekar [aut, cre],
GAMS Development Corp. [cph, fnd],
GAMS Software GmbH [cph, fnd]
Maintainer: Atharv Bhosekar <abhosekar@gams.com>
Diff between gamstransfer versions 3.0.2 dated 2024-04-05 and 3.0.3 dated 2024-06-13
gamstransfer-3.0.2/gamstransfer/tests/testthat/data.gdx |only gamstransfer-3.0.2/gamstransfer/tests/testthat/diffile.gdx |only gamstransfer-3.0.2/gamstransfer/tests/testthat/empty.gdx |only gamstransfer-3.0.2/gamstransfer/tests/testthat/foo.gdx |only gamstransfer-3.0.2/gamstransfer/tests/testthat/foo.gms |only gamstransfer-3.0.2/gamstransfer/tests/testthat/foo.lst |only gamstransfer-3.0.2/gamstransfer/tests/testthat/gt.gdx |only gamstransfer-3.0.2/gamstransfer/tests/testthat/out.gdx |only gamstransfer-3.0.2/gamstransfer/tests/testthat/partial_equation.gdx |only gamstransfer-3.0.2/gamstransfer/tests/testthat/partial_parameter.gdx |only gamstransfer-3.0.2/gamstransfer/tests/testthat/partial_scalar.gdx |only gamstransfer-3.0.2/gamstransfer/tests/testthat/partial_scalar_equation.gdx |only gamstransfer-3.0.2/gamstransfer/tests/testthat/partial_scalar_variable.gdx |only gamstransfer-3.0.2/gamstransfer/tests/testthat/partial_set.gdx |only gamstransfer-3.0.2/gamstransfer/tests/testthat/partial_variable.gdx |only gamstransfer-3.0.2/gamstransfer/tests/testthat/partial_write.gdx |only gamstransfer-3.0.3/gamstransfer/DESCRIPTION | 8 gamstransfer-3.0.3/gamstransfer/MD5 | 172 - gamstransfer-3.0.3/gamstransfer/NEWS.md | 9 gamstransfer-3.0.3/gamstransfer/R/Alias.R | 15 gamstransfer-3.0.3/gamstransfer/R/BaseAlias.R | 15 gamstransfer-3.0.3/gamstransfer/R/Container.R | 39 gamstransfer-3.0.3/gamstransfer/R/Equation.R | 31 gamstransfer-3.0.3/gamstransfer/R/Parameter.R | 19 gamstransfer-3.0.3/gamstransfer/R/Set.R | 24 gamstransfer-3.0.3/gamstransfer/R/Symbol.R | 86 gamstransfer-3.0.3/gamstransfer/R/UniverseAlias.R | 8 gamstransfer-3.0.3/gamstransfer/R/Variable.R | 26 gamstransfer-3.0.3/gamstransfer/configure | 23 gamstransfer-3.0.3/gamstransfer/configure.ac | 22 gamstransfer-3.0.3/gamstransfer/src/Makevars.in | 7 gamstransfer-3.0.3/gamstransfer/src/Makevars.win | 7 gamstransfer-3.0.3/gamstransfer/src/Read.cpp | 67 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/charmaps.cpp | 41 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/charmaps.h | 31 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/cmdpar.cpp | 5 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/cmdpar.h | 4 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/datastorage.h | 1 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/gfileopen.cpp | 191 + gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/gfileopen.h | 13 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/glookup.h | 170 - gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/gmacro.cpp | 37 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/gmacro.h | 35 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/gmsdata.h | 234 -- gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/gmsgen.h | 8 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/gmsglob.cpp | 1 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/gmsglob.h | 2 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/gmsheapnew.cpp | 2 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/gmsheapnew.h | 15 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/gmslist.cpp | 179 + gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/gmslist.h | 99 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/gmsobj.h | 9 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/gmsstrm.cpp | 766 +------ gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/gmsstrm.h | 175 - gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/obfuscatestr.cpp | 6 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/runner.cpp | 19 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/runner.h | 17 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/statlib.cpp | 13 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/statlib.h | 2 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/statlibobj.cpp | 495 ++-- gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/statlibobj.h | 70 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/stattypes.h | 2 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/strhash.h | 369 --- gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/strutilx.cpp | 165 - gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/strutilx.h | 28 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/utils.cpp | 184 - gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/utils.h | 126 - gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdlib/xcompress.cpp | 12 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gdx.h | 6 gamstransfer-3.0.3/gamstransfer/src/gdx/src/global/ctvproc.cpp | 2 gamstransfer-3.0.3/gamstransfer/src/gdx/src/global/ctvproc.h | 41 gamstransfer-3.0.3/gamstransfer/src/gdx/src/global/delphitypes.h | 43 gamstransfer-3.0.3/gamstransfer/src/gdx/src/global/gmsspecs.h | 21 gamstransfer-3.0.3/gamstransfer/src/gdx/src/global/modhead.cpp | 17 gamstransfer-3.0.3/gamstransfer/src/gdx/src/global/modhead.h | 21 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gxfile.cpp | 62 gamstransfer-3.0.3/gamstransfer/src/gdx/src/gxfile.h | 32 gamstransfer-3.0.3/gamstransfer/src/gdx/src/rtl/dtoaLoc.c | 5 gamstransfer-3.0.3/gamstransfer/src/gdx/src/rtl/idglobal_p3.cpp | 20 gamstransfer-3.0.3/gamstransfer/src/gdx/src/rtl/idglobal_p3.h | 1 gamstransfer-3.0.3/gamstransfer/src/gdx/src/rtl/math_p3.cpp | 5 gamstransfer-3.0.3/gamstransfer/src/gdx/src/rtl/math_p3.h | 3 gamstransfer-3.0.3/gamstransfer/src/gdx/src/rtl/p3io.cpp | 359 +++ gamstransfer-3.0.3/gamstransfer/src/gdx/src/rtl/p3io.h | 53 gamstransfer-3.0.3/gamstransfer/src/gdx/src/rtl/p3library.cpp | 8 gamstransfer-3.0.3/gamstransfer/src/gdx/src/rtl/p3library.h | 2 gamstransfer-3.0.3/gamstransfer/src/gdx/src/rtl/p3platform.h | 5 gamstransfer-3.0.3/gamstransfer/src/gdx/src/rtl/p3process.cpp | 111 - gamstransfer-3.0.3/gamstransfer/src/gdx/src/rtl/p3process.h | 15 gamstransfer-3.0.3/gamstransfer/src/gdx/src/rtl/p3utils.cpp | 1005 ++++++---- gamstransfer-3.0.3/gamstransfer/src/gdx/src/rtl/p3utils.h | 51 gamstransfer-3.0.3/gamstransfer/src/gdx/src/rtl/system_p3.cpp |only gamstransfer-3.0.3/gamstransfer/src/gdx/src/rtl/system_p3.h |only gamstransfer-3.0.3/gamstransfer/src/gdx/src/rtl/sysutils_p3.cpp | 230 +- gamstransfer-3.0.3/gamstransfer/src/gdx/src/rtl/sysutils_p3.h | 14 gamstransfer-3.0.3/gamstransfer/tests/testthat/test-read.R | 16 96 files changed, 3258 insertions(+), 2994 deletions(-)
Title: Bayesian Seemingly Unrelated Regression Models in
High-Dimensional Settings
Description: Bayesian seemingly unrelated regression with general variable selection and dense/sparse covariance matrix. The sparse seemingly unrelated regression is described in Bottolo et al. (2021) <doi:10.1111/rssc.12490>, the software paper is in Zhao et al. (2021) <doi:10.18637/jss.v100.i11>, and the model with random effects is described in Zhao et al. (2024) <doi:10.1093/jrsssc/qlad102>.
Author: Marco Banterle [aut],
Zhi Zhao [aut, cre],
Leonardo Bottolo [ctb],
Sylvia Richardson [ctb],
Waldir Leoncio [ctb],
Alex Lewin [aut],
Manuela Zucknick [aut]
Maintainer: Zhi Zhao <zhi.zhao@medisin.uio.no>
Diff between BayesSUR versions 2.1-7 dated 2024-04-17 and 2.2-0 dated 2024-06-13
DESCRIPTION | 15 ++- MD5 | 34 ++++---- NAMESPACE | 1 NEWS.md | 7 + R/BayesSUR.R | 148 ++++++++++++++++++++----------------- R/plotEstimator.R | 28 +++++-- README.md | 62 +++++++-------- build/vignette.rds |binary data/exampleGDSC.rda |binary inst/doc/BayesSUR-RE.Rmd | 61 +++++++-------- inst/doc/BayesSUR-RE.html | 61 +++++++-------- man/BayesSUR.Rd | 1 man/plotEstimator.Rd | 10 ++ src/HRR_Chain.cpp | 181 ++++++++++++++++++++++++++++++++-------------- src/HRR_Chain.h | 2 src/SUR_Chain.cpp | 102 +++++++++++-------------- src/drive.cpp | 8 +- vignettes/BayesSUR-RE.Rmd | 61 +++++++-------- 18 files changed, 440 insertions(+), 342 deletions(-)
Title: Adapted Pair Correlation Function
Description: The adapted pair correlation function transfers the concept of the
pair correlation function from point patterns to patterns of objects of
finite size and irregular shape (e.g. lakes within a country). The pair
correlation function describes the spatial distribution of objects, e.g.
random, aggregated or regularly spaced. This is a reimplementation of the
method suggested by Nuske et al. (2009) <doi:10.1016/j.foreco.2009.09.050>
using the library 'GEOS'.
Author: Robert Nuske [aut, cre]
Maintainer: Robert Nuske <robert.nuske@mailbox.org>
Diff between apcf versions 0.3.0 dated 2022-11-11 and 0.3.1 dated 2024-06-13
DESCRIPTION | 10 MD5 | 28 NEWS.md | 5 R/apcf-package.R | 3 README.md | 2 build/vignette.rds |binary configure | 2486 +++++++++++++++++++++++++------------------------- configure.ac | 14 inst/CITATION | 28 inst/doc/intro.R | 2 inst/doc/intro.html | 121 +- man/apcf-package.Rd | 14 src/Makevars.in | 2 src/Makevars.win | 2 src/import_export.cpp | 6 15 files changed, 1393 insertions(+), 1330 deletions(-)
Title: Nonparametric Methods for Directional Data
Description: Nonparametric kernel density estimation, bandwidth selection,
and other utilities for analyzing directional data. Implements the estimator
in Bai, Rao and Zhao (1987) <doi:10.1016/0047-259X(88)90113-3>, the
cross-validation bandwidth selectors in Hall, Watson and Cabrera (1987)
<doi:10.1093/biomet/74.4.751> and the plug-in bandwidth selectors in
García-Portugués (2013) <doi:10.1214/13-ejs821>.
Author: Eduardo Garcia-Portugues [aut, cre]
Maintainer: Eduardo Garcia-Portugues <edgarcia@est-econ.uc3m.es>
Diff between DirStats versions 0.1.9 dated 2023-08-16 and 0.1.10 dated 2024-06-13
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 10 +++++++--- src/ribesl.f90 | 3 ++- 4 files changed, 16 insertions(+), 11 deletions(-)
Title: Diagnostic Graphics to Evaluate Forecast Performance
Description: Overall predictive performance is measured by a mean score
(or loss), which decomposes into miscalibration, discrimination, and
uncertainty components. The main focus is visualization of these distinct
and complementary aspects in joint displays.
See Dimitriadis, Gneiting, Jordan, Vogel (2024) <doi:10.1016/j.ijforecast.2023.09.007>.
Author: Timo Dimitriadis [aut, cph],
Alexander I. Jordan [aut, cre, cph]
Maintainer: Alexander I. Jordan <alexander.jordan@h-its.org>
Diff between triptych versions 0.1.2 dated 2023-10-03 and 0.1.3 dated 2024-06-13
DESCRIPTION | 14 ++-- MD5 | 28 ++++---- NAMESPACE | 15 ++++ NEWS.md | 5 + R/cpp11.R | 36 +++++++++-- R/plot.R | 32 ++++++--- R/triptych.R | 5 + R/triptych_mcbdsc.R | 5 - R/triptych_murphy.R | 13 +++- R/triptych_reliability.R | 3 R/triptych_roc.R | 4 - README.md | 4 - man/figures/README-example_MCBDSC-1.png |binary src/cpp11.cpp | 74 ++++++++++++++++++---- src/md.cpp | 104 ++++++++++++++++++++++++++++---- 15 files changed, 273 insertions(+), 69 deletions(-)
Title: Support Functions for Wrangling and Visualization
Description: Suite of helper functions for data wrangling and visualization.
The only theme for these functions is that they tend towards simple, short, and narrowly-scoped.
These functions are built for tasks that often recur but are not large enough in scope to warrant an ecosystem of interdependent functions.
Author: Nicholas J Lyon [aut, cre, cph]
Maintainer: Nicholas J Lyon <njlyon@alumni.iastate.edu>
Diff between supportR versions 1.3.0 dated 2024-04-12 and 1.4.0 dated 2024-06-13
DESCRIPTION | 14 + MD5 | 76 +++++---- NAMESPACE | 3 NEWS.md | 11 + R/array_melt.R | 11 + R/count.R |only R/crop_tri.R | 25 ++- R/date_check.R | 27 ++- R/date_format_guess.R | 69 +++++--- R/diff_check.R | 10 - R/force_num.R | 2 R/github_ls.R | 4 R/name_vec.R | 6 R/nms_ord.R | 43 +++-- R/num_check.R | 33 ++-- R/ordination.R |only R/pcoa_ord.R | 37 +++- R/replace_non_ascii.R |only R/rmd_export.R | 11 - R/safe_rename.R | 5 R/summary_table.R | 10 - R/tabularize_md.R | 8 - README.md | 22 +- build/vignette.rds |binary inst/doc/supportR.R | 323 ++++++++++++++++++++++++++++++++++++----- inst/doc/supportR.Rmd | 357 ++++++++++++++++++++++++++++++++++++++++----- inst/doc/supportR.html | 367 +++++++++++++++++++++++------------------------ man/count.Rd |only man/date_check.Rd | 10 - man/name_vec.Rd | 2 man/nms_ord.Rd | 14 + man/num_check.Rd | 11 - man/ordination.Rd |only man/pcoa_ord.Rd | 14 + man/replace_non_ascii.Rd |only man/rmd_export.Rd | 2 tests |only vignettes/supportR.Rmd | 357 ++++++++++++++++++++++++++++++++++++++++----- 38 files changed, 1403 insertions(+), 481 deletions(-)
Title: Simulate Data from a DAG and Associated Node Information
Description: Simulate complex data from a given directed acyclic graph and information about each individual node.
Root nodes are simply sampled from the specified distribution. Child Nodes are simulated according to
one of many implemented regressions, such as logistic regression, linear
regression, poisson regression and more. Also includes a comprehensive framework for discrete-time
simulation, which can generate even more complex longitudinal data.
Author: Robin Denz [aut, cre],
Katharina Meiszl [aut]
Maintainer: Robin Denz <robin.denz@rub.de>
Diff between simDAG versions 0.1.1 dated 2024-03-07 and 0.1.2 dated 2024-06-13
DESCRIPTION | 14 - MD5 | 157 ++++++++++++-------- NAMESPACE | 7 NEWS.md | 30 ++++ R/dag.r | 81 +++++++++- R/input_checks.r | 36 +++- R/long2start_stop.r | 72 ++++----- R/node.r | 25 ++- R/node_binomial.r | 7 R/node_competing_events.r | 2 R/node_conditional_prob.r | 4 R/node_cox.r | 7 R/node_gaussian.r | 7 R/node_multinomial.r | 5 R/node_negative_binomial.r | 8 - R/node_poisson.r | 7 R/node_time_to_event.r | 2 R/plot.DAG.r | 3 R/sim2data.r | 44 +++++ R/sim2start_stop.r | 71 ++++++++- R/sim2start_stop_collapse.r |only R/sim_discrete_time.r | 2 R/sim_from_dag.r | 5 R/sim_n_datasets.r | 21 +- R/structural_equations.r |only README.md | 180 ++++++++++++------------ inst/doc/v_covid_example.html | 53 +++---- inst/doc/v_sim_discrete_time.R | 4 inst/doc/v_sim_discrete_time.Rmd | 6 inst/doc/v_sim_discrete_time.html | 73 +++++---- inst/doc/v_sim_from_dag.R | 3 inst/doc/v_sim_from_dag.Rmd | 6 inst/doc/v_sim_from_dag.html | 156 +++++++++++--------- man/as.igraph.DAG.Rd |only man/dag_from_data.Rd | 2 man/long2start_stop.Rd | 6 man/node_binomial.Rd | 20 ++ man/node_competing_events.Rd | 9 - man/node_conditional_distr.Rd | 13 + man/node_conditional_prob.Rd | 18 ++ man/node_cox.Rd | 2 man/node_custom.Rd | 121 ++++++++++++++-- man/node_gaussian.Rd | 15 +- man/node_multinomial.Rd | 2 man/node_negative_binomial.Rd | 2 man/node_poisson.Rd | 22 ++ man/node_time_to_event.Rd | 11 - man/plot.DAG.Rd | 7 man/sim2data.Rd | 67 +++++++- man/sim_discrete_time.Rd | 2 man/sim_n_datasets.Rd | 7 tests/testthat.R | 1 tests/testthat/_snaps/DAG.node_S3.md | 34 +++- tests/testthat/_snaps/dag.md | 11 - tests/testthat/_snaps/node.md | 2 tests/testthat/test_DAG.node_S3.r | 27 +++ tests/testthat/test_align_str_equations.r |only tests/testthat/test_as.igraph.DAG.r |only tests/testthat/test_collapse_for_target_event.r |only tests/testthat/test_extract_function_name.r |only tests/testthat/test_get_beta_plus_parents.r |only tests/testthat/test_get_distr_default.r |only tests/testthat/test_get_event_duration.r | 2 tests/testthat/test_get_param_str.r |only tests/testthat/test_input_checks_sim2data.r | 17 ++ tests/testthat/test_long2start_stop.r | 50 ++++++ tests/testthat/test_node_binomial.r | 13 + tests/testthat/test_node_conditional_prob.r | 17 ++ tests/testthat/test_node_cox.r | 18 ++ tests/testthat/test_node_gaussian.r | 61 ++++++++ tests/testthat/test_node_multinomial.r | 16 ++ tests/testthat/test_node_negative_binomial.r | 14 + tests/testthat/test_node_poisson.r | 13 + tests/testthat/test_node_time_to_event.r | 16 -- tests/testthat/test_sim2data.r | 5 tests/testthat/test_sim2start_stop.all.r |only tests/testthat/test_sim2start_stop.last.r | 5 tests/testthat/test_str_eq_binomial.r |only tests/testthat/test_str_eq_child.r |only tests/testthat/test_str_eq_conditional_distr.r |only tests/testthat/test_str_eq_conditional_prob.r |only tests/testthat/test_str_eq_cox.r |only tests/testthat/test_str_eq_gaussian.r |only tests/testthat/test_str_eq_negative_binomial.r |only tests/testthat/test_str_eq_poisson.r |only tests/testthat/test_str_eq_root.r |only tests/testthat/test_str_eq_td.r |only tests/testthat/test_str_eq_time_to_event.r |only tests/testthat/test_structural_equation.r |only vignettes/v_sim_discrete_time.Rmd | 6 vignettes/v_sim_from_dag.Rmd | 6 91 files changed, 1280 insertions(+), 478 deletions(-)
Title: 'cry' and 'rgl' — Applications in Crystallography
Description: Visualizing crystal structures and selected area electron diffraction (SAED) patterns. It provides functions cry_demo() and dp_demo() to load a file in 'CIF' (Crystallographic Information Framework) formats and display crystal structures and electron diffraction patterns. The function dp_demo() also performs simple simulation of powder X-ray diffraction (PXRD) patterns, and the results can be saved to a file in the working directory. The package has been tested on several platforms, including Linux on 'Crostini' with a Core™ m3-8100Y Chromebook, I found that even on this low-powered platform, the performance was acceptable.
T. Hanashima (2001) <https://www2.kek.jp/imss/pf/tools/sasaki/sinram/sinram.html>
Todd Helmenstine (2019) <https://sciencenotes.org/molecule-atom-colors-cpk-colors/>
Wikipedia contributors (2023) <https://en.wikipedia.org/w/index.php?title=Atomic_radius&oldid=1179864711>.
Author: Toshihide Saitou [aut, cre, cph]
Maintainer: Toshihide Saitou <saitou.toshihide@gmail.com>
Diff between rgl.cry versions 0.1.0 dated 2024-02-28 and 0.1.1 dated 2024-06-13
rgl.cry-0.1.0/rgl.cry/tests/spelling.R |only rgl.cry-0.1.1/rgl.cry/DESCRIPTION | 8 +-- rgl.cry-0.1.1/rgl.cry/MD5 | 19 +++---- rgl.cry-0.1.1/rgl.cry/NEWS.md | 9 ++- rgl.cry-0.1.1/rgl.cry/R/align.R | 37 ++++++++++---- rgl.cry-0.1.1/rgl.cry/R/cry_demo.R | 32 ++++-------- rgl.cry-0.1.1/rgl.cry/R/dp_demo.R | 85 +++++++++++++++++++-------------- rgl.cry-0.1.1/rgl.cry/README.md | 46 ++++++++++------- rgl.cry-0.1.1/rgl.cry/inst/3nir.cif |only rgl.cry-0.1.1/rgl.cry/inst/3syu.cif |only rgl.cry-0.1.1/rgl.cry/inst/WORDLIST | 8 +++ rgl.cry-0.1.1/rgl.cry/man/dp_demo.Rd | 5 + 12 files changed, 146 insertions(+), 103 deletions(-)
Title: Broadly Useful Convenient and Efficient R Functions
Description: Broadly useful convenient and efficient R functions
that bring users concise and elegant R data analyses.
This package includes easy-to-use functions for
(1) basic R programming
(e.g., set working directory to the path of currently opened file;
import/export data from/to files in any format;
print tables to Microsoft Word);
(2) multivariate computation
(e.g., compute scale sums/means/... with reverse scoring);
(3) reliability analyses and factor analyses;
(4) descriptive statistics and correlation analyses;
(5) t-test, multi-factor analysis of variance (ANOVA),
simple-effect analysis, and post-hoc multiple comparison;
(6) tidy report of statistical models
(to R Console and Microsoft Word);
(7) mediation and moderation analyses (PROCESS);
and (8) additional toolbox for statistics and graphics.
Author: Han-Wu-Shuang Bao [aut, cre]
Maintainer: Han-Wu-Shuang Bao <baohws@foxmail.com>
Diff between bruceR versions 2023.9 dated 2023-09-27 and 2024.6 dated 2024-06-13
DESCRIPTION | 24 ++++++++++++------------ MD5 | 16 ++++++++-------- NAMESPACE | 14 ++++++++++++++ NEWS.md | 11 ++++++++--- R/bruceR-stats_3_manova.R | 6 +++++- R/bruceR.R | 4 +++- R/bruceR_utils.R | 2 +- README.md | 6 +++--- man/EMMEANS.Rd | 5 ++++- 9 files changed, 58 insertions(+), 30 deletions(-)
Title: Nonparametric Bounds for the Average Causal Effect Due to Balke
and Pearl and Extensions
Description: Implementation of the nonparametric bounds for the average
causal effect under an instrumental variable model by Balke and Pearl
(Bounds on Treatment Effects from Studies with Imperfect Compliance,
JASA, 1997, 92, 439, 1171-1176, <doi:10.2307/2965583>). The package
can calculate bounds for a binary outcome, a binary
treatment/phenotype, and an instrument with either 2 or 3 categories.
The package implements bounds for situations where these 3 variables
are measured in the same dataset (trivariate data) or where the
outcome and instrument are measured in one study and the
treatment/phenotype and instrument are measured in another study
(bivariate data).
Author: Tom Palmer [aut, cre] ,
Roland Ramsahai [aut] ,
Vanessa Didelez [aut] ,
Nuala Sheehan [aut]
Maintainer: Tom Palmer <remlapmot@hotmail.com>
Diff between bpbounds versions 0.1.5 dated 2023-05-03 and 0.1.6 dated 2024-06-13
DESCRIPTION | 25 +- MD5 | 25 +- NEWS.md | 16 + R/bpbounds-package.r | 22 -- R/bpbounds.R | 17 - README.md | 32 ++- build/partial.rdb |only build/vignette.rds |binary inst/doc/bpbounds.R | 68 +++---- inst/doc/bpbounds.Rmd | 79 ++++----- inst/doc/bpbounds.html | 420 +++++++++++++++++++++++------------------------- man/bpbounds-package.Rd | 33 ++- man/bpbounds.Rd | 15 - vignettes/bpbounds.Rmd | 79 ++++----- 14 files changed, 417 insertions(+), 414 deletions(-)
Title: Expression Data Analysis and Visualization
Description: The Gene Expression Omnibus (<https://www.ncbi.nlm.nih.gov/geo/>) and The Cancer Genome Atlas (<https://portal.gdc.cancer.gov/>) are widely used medical public databases. Our platform integrates routine analysis and visualization tools for expression data to provide concise and intuitive data analysis and presentation.
Author: Xiaojie Sun [aut, cre]
Maintainer: Xiaojie Sun <18763899370@163.com>
Diff between tinyarray versions 2.4.1 dated 2024-06-04 and 2.4.2 dated 2024-06-13
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/3_get_deg.R | 20 +++++++++++--------- R/4_multi_deg.R | 16 +++++++++++----- R/start_massage.R | 5 ++++- data/pkg_all.rda |binary man/pkg_all.Rd | 2 +- 7 files changed, 37 insertions(+), 26 deletions(-)
Title: Visualization of Patient Profiles
Description: Creation of patient profile visualizations for
exploration, diagnostic or monitoring purposes during a clinical trial.
These static visualizations display a patient-specific overview
of the evolution during the trial time frame of
parameters of interest (as laboratory, ECG, vital signs),
presence of adverse events, exposure to a treatment;
associated with metadata patient information,
as demography, concomitant medication.
The visualizations can be tailored for specific domain(s) or endpoint(s) of interest.
Visualizations are exported into patient profile report(s)
or can be embedded in custom report(s).
Author: Laure Cougnaud [aut, cre],
Margaux Faes [rev] ,
Open Analytics [cph]
Maintainer: Laure Cougnaud <laure.cougnaud@openanalytics.eu>
Diff between patientProfilesVis versions 2.0.7 dated 2024-03-09 and 2.0.8 dated 2024-06-13
DESCRIPTION | 8 +-- MD5 | 26 +++++------ R/report_addReferenceLinesProfilePlot.R | 5 +- R/subjectProfileEventPlot.R | 8 +-- R/subjectProfileIntervalPlot.R | 31 ++++++++------ R/subjectProfileLinePlot.R | 27 ++++++------ R/subjectProfileTextPlot.R | 3 - build/vignette.rds |binary inst/NEWS | 5 ++ inst/doc/patientProfiles-template-SDTM.html | 14 +++--- inst/doc/patientProfilesVis-introduction.html | 21 +++++---- man/formatParamVarTextPlot.Rd | 5 +- man/subjectProfileIntervalPlot.Rd | 5 ++ tests/testthat/test_subjectProfileIntervalPlot.R | 50 +++++++++++++++++++++++ 14 files changed, 141 insertions(+), 67 deletions(-)
More information about patientProfilesVis at CRAN
Permanent link
Title: One Sample Mendelian Randomization and Instrumental Variable
Analyses
Description: Useful functions for one-sample (individual level data)
Mendelian randomization and instrumental variable analyses. The
package includes implementations of; the Sanderson and Windmeijer
(2016) <doi:10.1016/j.jeconom.2015.06.004> conditional F-statistic,
the multiplicative structural mean model Hernán and Robins (2006)
<doi:10.1097/01.ede.0000222409.00878.37>, and two-stage predictor
substitution and two-stage residual inclusion estimators explained by
Terza et al. (2008) <doi:10.1016/j.jhealeco.2007.09.009>.
Author: Tom Palmer [aut, cre] ,
Wes Spiller [aut] ,
Eleanor Sanderson [aut]
Maintainer: Tom Palmer <remlapmot@hotmail.com>
Diff between OneSampleMR versions 0.1.3 dated 2023-05-03 and 0.1.4 dated 2024-06-13
DESCRIPTION | 12 +- MD5 | 51 ++++----- NEWS.md | 19 +++ R/asmm.R | 28 ++--- R/fsw.R | 18 +-- R/msmm.R | 34 +++--- R/onesamplemr-package.R | 31 ----- R/tsps.R | 16 +- R/tsri.R | 16 +- README.md | 37 ++++++ build/partial.rdb |binary build/vignette.rds |binary inst/CITATION |only inst/doc/compare-smm-fits.R | 14 +- inst/doc/compare-smm-fits.Rmd | 12 +- inst/doc/compare-smm-fits.html | 16 +- inst/doc/f-statistic-comparison.R | 2 inst/doc/f-statistic-comparison.Rmd | 2 inst/doc/f-statistic-comparison.html | 188 +++++++++++++++++------------------ man/OneSampleMR-package.Rd | 38 +++---- man/asmm.Rd | 28 ++--- man/fsw.Rd | 18 +-- man/msmm.Rd | 32 ++--- man/tsps.Rd | 14 +- man/tsri.Rd | 14 +- vignettes/compare-smm-fits.Rmd | 12 +- vignettes/f-statistic-comparison.Rmd | 2 27 files changed, 340 insertions(+), 314 deletions(-)
Title: Armadillo Client for the Armadillo Service
Description: A set of functions to manage data shared on a
'MOLGENIS Armadillo' server.
Author: Mariska Slofstra [aut, cre] ,
Sido Haakma [aut] ,
Tommy de Boer [aut] ,
Fleur Kelpin [aut] ,
Morris Swertz [aut] ,
Tim Cadman [aut]
Maintainer: Mariska Slofstra <m.k.slofstra@umcg.nl>
Diff between MolgenisArmadillo versions 2.3.0 dated 2023-11-17 and 2.6.3 dated 2024-06-13
DESCRIPTION | 21 MD5 | 71 +- NAMESPACE | 28 - R/names.R | 11 R/object.R | 36 + R/package.R | 21 R/project.R | 99 +++- R/subset.R | 611 +++++++++++++++++-------- R/table.R | 38 + R/utils.R | 13 inst/doc/MolgenisArmadillo.Rmd | 21 inst/doc/MolgenisArmadillo.html | 33 - inst/doc/create_resources.Rmd | 19 inst/doc/create_resources.html | 23 inst/doc/creating_data_subsets.Rmd | 129 ++--- inst/doc/creating_data_subsets.html | 133 ++--- man/MolgenisArmadillo-package.Rd | 1 man/armadillo.create_project.Rd | 10 man/armadillo.subset.Rd | 39 + man/armadillo.subset_definition.Rd | 20 man/dot-format_api_posts.Rd |only man/dot-get_linkfile_content.Rd |only man/dot-load_linked_table.Rd |only tests/testthat/helper.R | 61 +- tests/testthat/test-names.R | 24 tests/testthat/test-object.R | 174 +++++-- tests/testthat/test-package.R | 15 tests/testthat/test-project.R | 222 ++++++++- tests/testthat/test-resource.R | 16 tests/testthat/test-subset.R | 747 +++++++++++++++++++++---------- tests/testthat/test-table.R | 73 ++- vignettes/MolgenisArmadillo.Rmd | 21 vignettes/MolgenisArmadillo.Rmd.orig | 3 vignettes/create_resources.Rmd | 19 vignettes/creating_data_subsets.Rmd | 129 ++--- vignettes/creating_data_subsets.Rmd.orig | 84 ++- vignettes/data/subset/vars.csv | 61 +- vignettes/pre-render.R | 7 38 files changed, 2061 insertions(+), 972 deletions(-)
More information about MolgenisArmadillo at CRAN
Permanent link
Title: Power and Sample Size Calculation for Non-Proportional Hazards
and Beyond
Description: Performs power and sample size calculation for non-proportional hazards model using the Fleming-Harrington family of weighted log-rank tests. The sequentially calculated log-rank test score statistics are assumed to have independent increments as characterized in Anastasios A. Tsiatis (1982) <doi:10.1080/01621459.1982.10477898>. The mean and variance of log-rank test score statistics are calculated based on Kaifeng Lu (2021) <doi:10.1002/pst.2069>. The boundary crossing probabilities are calculated using the recursive integration algorithm described in Christopher Jennison and Bruce W. Turnbull (2000, ISBN:0849303168). The package can also be used for continuous, binary, and count data. For continuous data, it can handle missing data through mixed-model for repeated measures (MMRM). In crossover designs, it can estimate direct treatment effects while accounting for carryover effects. For binary data, it can design Simon's 2-stage, modified toxicity probability-2 (mTPI-2), a [...truncated...]
Author: Kaifeng Lu [aut, cre]
Maintainer: Kaifeng Lu <kaifenglu@gmail.com>
Diff between lrstat versions 0.2.6 dated 2024-05-11 and 0.2.7 dated 2024-06-13
DESCRIPTION | 8 MD5 | 69 ++- NAMESPACE | 6 NEWS.md | 14 R/RcppExports.R | 454 +++++++++++++++++++++++ R/data.R | 35 + R/getDesignMeans.R | 18 R/lrstat-package.R | 286 +++++++------- R/prints.R | 13 data/aml.rda |only data/heart.rda |only data/tobin.rda |only man/aml.Rd |only man/heart.Rd |only man/kmest.Rd | 2 man/liferegr.Rd |only man/phregr.Rd |only man/powerFisherExact.Rd | 2 man/powerOnePropExact.Rd | 7 man/powerOneRateExact.Rd | 2 man/powerRiskDiffExact.Rd | 2 man/powerRiskDiffExactEquiv.Rd | 2 man/powerRiskRatioExact.Rd | 2 man/powerRiskRatioExactEquiv.Rd | 2 man/riskDiffExactCI.Rd | 8 man/riskDiffExactPValue.Rd | 8 man/riskRatioExactCI.Rd | 8 man/riskRatioExactPValue.Rd | 8 man/rmest.Rd | 2 man/simonBayesAnalysis.Rd |only man/simonBayesSim.Rd |only man/tobin.Rd |only src/RcppExports.cpp | 99 +++++ src/basket.cpp |only src/kmstat.cpp | 763 +++++++--------------------------------- src/liferegr.cpp |only src/lrstat.cpp | 284 +++----------- src/misc.cpp | 52 +- src/phregr.cpp |only src/rmstat.cpp | 629 +++++++------------------------- src/utilities.cpp | 79 ++++ src/utilities.h | 6 42 files changed, 1303 insertions(+), 1567 deletions(-)
Title: Download Crypto Currency Data from 'CoinMarketCap' without 'API'
Description: Retrieves crypto currency information and historical prices as well as information on the exchanges they are listed on. Historical data contains daily open, high, low and close values for all crypto currencies. All data is scraped from <https://coinmarketcap.com> via their 'web-api'.
Author: Sebastian Stoeckl [aut, cre] ,
Jesse Vent [ctb]
Maintainer: Sebastian Stoeckl <sebastian.stoeckl@uni.li>
Diff between crypto2 versions 1.4.6 dated 2024-01-29 and 2.0.0 dated 2024-06-13
crypto2-1.4.6/crypto2/R/fiat_list.R |only crypto2-1.4.6/crypto2/R/sysdata.rda |only crypto2-2.0.0/crypto2/DESCRIPTION | 15 crypto2-2.0.0/crypto2/MD5 | 59 ++- crypto2-2.0.0/crypto2/NAMESPACE | 21 - crypto2-2.0.0/crypto2/NEWS.md | 15 crypto2-2.0.0/crypto2/R/crypto_global_quotes.R | 178 +++++++--- crypto2-2.0.0/crypto2/R/crypto_history.R | 186 ++++++---- crypto2-2.0.0/crypto2/R/crypto_info.R | 123 +++---- crypto2-2.0.0/crypto2/R/crypto_list.R | 84 +++- crypto2-2.0.0/crypto2/R/crypto_listings.R | 133 ++++--- crypto2-2.0.0/crypto2/R/extras.R |only crypto2-2.0.0/crypto2/R/globals.R | 4 crypto2-2.0.0/crypto2/README.md | 384 +++++++++++----------- crypto2-2.0.0/crypto2/man/construct_url.Rd |only crypto2-2.0.0/crypto2/man/convert_date.Rd |only crypto2-2.0.0/crypto2/man/crypto_global_quotes.Rd | 20 - crypto2-2.0.0/crypto2/man/crypto_history.Rd | 30 - crypto2-2.0.0/crypto2/man/crypto_info.Rd | 27 - crypto2-2.0.0/crypto2/man/crypto_list.Rd | 21 - crypto2-2.0.0/crypto2/man/crypto_listings.Rd | 50 +- crypto2-2.0.0/crypto2/man/exchange_info.Rd | 19 - crypto2-2.0.0/crypto2/man/fiat_list.Rd |only crypto2-2.0.0/crypto2/man/safeFromJSON.Rd |only crypto2-2.0.0/crypto2/tests/testthat |only crypto2-2.0.0/crypto2/tests/testthat.R |only 26 files changed, 828 insertions(+), 541 deletions(-)
Title: Clinical Data Review Tool
Description: Creation of interactive tables, listings and figures ('TLFs')
and associated report for exploratory analysis of data in a clinical trial,
e.g. for clinical oversight activities.
Interactive figures include sunburst, treemap, scatterplot, line plot and
barplot of counts data.
Interactive tables include table of summary statistics
(as counts of adverse events, enrollment table) and listings.
Possibility to compare data (summary table or listing) across two data batches/sets.
A clinical data review report is created via study-specific configuration
files and template 'R Markdown' reports contained in the package.
Author: Laure Cougnaud [aut, cre],
Michela Pasetto [aut],
Lennart Tuijnder [aut],
Adriaan Blommaert [aut],
Arne De Roeck [ctb, rev] ,
Open Analytics [cph]
Maintainer: Laure Cougnaud <laure.cougnaud@openanalytics.eu>
Diff between clinDataReview versions 1.5.2 dated 2024-05-17 and 1.6.0 dated 2024-06-13
DESCRIPTION | 12 - MD5 | 99 +++++++------ NAMESPACE | 9 + R/doc-clinDataReview-common-args.R | 11 + R/plots-barplotClinData.R | 24 ++- R/plots-boxplotClinData.R | 46 ++++-- R/plots-countClinData.R | 57 ++++--- R/plots-errorbarClinData.R | 40 +++-- R/plots-scatterplotClinData.R | 34 +++- R/plots-staticScatterplotClinData.R | 2 R/plots-timeProfileIntervalPlot.R | 2 R/plots-utility-axisLabels.R | 27 +++ R/plots-utility-getPlotTableVars.R | 22 ++- R/plots-utility-layout.R | 4 R/plots-utility-referenceLines.R | 8 - R/plots-utility-watermark.R |only build/vignette.rds |binary inst/NEWS | 9 + inst/doc/clinDataReview-dataPreprocessing.html | 21 +- inst/doc/clinDataReview-dataVisualization.R | 18 ++ inst/doc/clinDataReview-dataVisualization.Rmd | 25 +++ inst/doc/clinDataReview-dataVisualization.html | 180 ++++++++++++++----------- inst/doc/clinDataReview-reporting.html | 34 ++-- inst/template/plotTemplate.Rmd | 3 inst/template/summaryPlotTemplate.Rmd | 4 inst/template/summaryPlotTemplate.json | 2 man/addFacetPanel.Rd | 13 + man/addWatermark.Rd |only man/barplotClinData.Rd | 23 ++- man/boxplotClinData.Rd | 23 ++- man/clinDataReview-common-args.Rd | 14 + man/clinDataReview-templates.Rd | 2 man/errorbarClinData.Rd | 23 ++- man/formatDataForPlotClinData.Rd | 2 man/getAxisLab.Rd |only man/getSizePlot.Rd | 4 man/getWatermark.Rd |only man/layoutClinData.Rd | 7 man/plotCountClinData.Rd | 19 +- man/scatterplotClinData.Rd | 25 ++- man/staticScatterplotClinData.Rd | 6 man/sunburstClinData.Rd | 7 man/timeProfileIntervalPlot.Rd | 9 - man/treemapClinData.Rd | 7 tests/testthat/test_barplotClinData.R | 71 +++++++++ tests/testthat/test_boxplotClinData.R | 79 ++++++++++ tests/testthat/test_errorbarClinData.R | 74 ++++++++++ tests/testthat/test_plotCountClinData.R | 27 +++ tests/testthat/test_scatterplotClinData.R | 103 ++++++++++++-- tests/testthat/test_templates.R | 63 ++++++++ tests/testthat/test_timeProfileIntervalPlot.R | 31 ++++ tests/testthat/test_utility-watermark.R |only vignettes/clinDataReview-dataVisualization.Rmd | 25 +++ 53 files changed, 1027 insertions(+), 323 deletions(-)
More information about clinDataReview at CRAN
Permanent link
Title: Latent Variable Count Regression Models
Description: Estimation of a multi-group count regression models (i.e., Poisson,
negative binomial) with latent covariates. This packages provides two extensions
compared to ordinary count regression models based on a generalized linear model:
First, measurement models for the predictors can be specified allowing to account
for measurement error. Second, the count regression can be simultaneously estimated
in multiple groups with stochastic group weights. The marginal maximum likelihood
estimation is described in Kiefer & Mayer (2020) <doi:10.1080/00273171.2020.1751027>.
Author: Christoph Kiefer [cre, aut]
Maintainer: Christoph Kiefer <christoph.kiefer@uni-bielefeld.de>
Diff between lavacreg versions 0.2-1 dated 2023-10-26 and 0.2-2 dated 2024-06-13
lavacreg-0.2-1/lavacreg/man/lavacreg.Rd |only lavacreg-0.2-2/lavacreg/DESCRIPTION | 10 lavacreg-0.2-2/lavacreg/MD5 | 42 lavacreg-0.2-2/lavacreg/NEWS.md | 3 lavacreg-0.2-2/lavacreg/R/00documentation.R | 22 lavacreg-0.2-2/lavacreg/R/00methods.R | 49 lavacreg-0.2-2/lavacreg/R/RcppExports.R | 10 lavacreg-0.2-2/lavacreg/R/creg_input.R | 19 lavacreg-0.2-2/lavacreg/R/creg_loglikelihood.R | 7 lavacreg-0.2-2/lavacreg/R/creg_modellist.R | 11 lavacreg-0.2-2/lavacreg/R/creg_partable.R | 49 lavacreg-0.2-2/lavacreg/R/creg_startvals.r | 77 lavacreg-0.2-2/lavacreg/R/creg_vcov.r | 1 lavacreg-0.2-2/lavacreg/R/lavacreg-package.R |only lavacreg-0.2-2/lavacreg/build/partial.rdb |only lavacreg-0.2-2/lavacreg/build/vignette.rds |binary lavacreg-0.2-2/lavacreg/inst/doc/intro.html | 487 ++--- lavacreg-0.2-2/lavacreg/man/lavacreg-package.Rd |only lavacreg-0.2-2/lavacreg/src/RcppExports.cpp | 9 lavacreg-0.2-2/lavacreg/src/compute_groupcond_logl.cpp | 69 lavacreg-0.2-2/lavacreg/src/creg_header_funs.cpp | 24 lavacreg-0.2-2/lavacreg/src/creg_header_funs.h | 9 lavacreg-0.2-2/lavacreg/tests/testthat/test-countreg.R | 35 lavacreg-0.2-2/lavacreg/tests/testthat/test_interactions.r | 1231 ++++++++++++- 24 files changed, 1770 insertions(+), 394 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-08 1.5
2018-08-21 1.4.2
2018-08-20 1.4.1
2015-09-23 1.1.3
2014-12-08 1.1.2
2014-09-26 1.1.1
2014-06-19 1.0.2
2014-06-18 1.0.1
Title: Simultaneous Penalized Linear Mixed Effects Models
Description: Contains functions that fit linear mixed-effects models
for high-dimensional data (p>>n) with penalty for both the fixed effects and random effects for variable selection.
The details of the algorithm can be found in Luoying Yang PhD thesis (Yang and Wu 2020). The algorithm implementation
is based on the R package 'lmmlasso'.
Reference: Yang L, Wu TT (2020). Model-Based Clustering of Longitudinal Data in High-Dimensionality. Unpublished thesis.
Author: Luoying Yang [aut],
Eli Sun [aut, cre],
Tong Tong Wu [aut]
Maintainer: Eli Sun <eli_sun@urmc.rochester.edu>
Diff between splmm versions 1.1.3 dated 2021-09-08 and 1.2.0 dated 2024-06-13
DESCRIPTION | 28 + MD5 | 18 - NAMESPACE | 1 R/methods.R | 11 R/splmm.R | 789 +++++++++++++++++++++++++--------------------------- R/splmmControl.R | 16 - build/partial.rdb |binary man/splmmControl.Rd | 2 src/Makevars | 2 src/Makevars.win | 1 10 files changed, 434 insertions(+), 434 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management
system with support for the Structured Query Language (SQL). This
package includes all of DuckDB and a R Database Interface (DBI)
connector.
Author: Hannes Muehleisen [aut] ,
Mark Raasveldt [aut] ,
Kirill Mueller [cre] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrocher [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckdb versions 0.10.2 dated 2024-05-01 and 1.0.0 dated 2024-06-13
duckdb-0.10.2/duckdb/src/duckdb/src/core_functions/scalar/secret |only duckdb-0.10.2/duckdb/src/duckdb/src/execution/index/unknown_index.cpp |only duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/index/unknown_index.hpp |only duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/estimated_properties.hpp |only duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/join_order/estimated_properties.cpp |only duckdb-0.10.2/duckdb/src/duckdb/ub_src_core_functions_scalar_secret.cpp |only duckdb-1.0.0/duckdb/DESCRIPTION | 10 duckdb-1.0.0/duckdb/MD5 | 1806 duckdb-1.0.0/duckdb/NEWS.md | 23 duckdb-1.0.0/duckdb/R/backend-dbplyr__duckdb_connection.R | 42 duckdb-1.0.0/duckdb/R/cpp11.R | 4 duckdb-1.0.0/duckdb/R/relational.R | 13 duckdb-1.0.0/duckdb/src/Makevars | 2 duckdb-1.0.0/duckdb/src/Makevars.win | 2 duckdb-1.0.0/duckdb/src/cpp11.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/extension/parquet/column_reader.cpp | 14 duckdb-1.0.0/duckdb/src/duckdb/extension/parquet/column_writer.cpp | 49 duckdb-1.0.0/duckdb/src/duckdb/extension/parquet/include/column_writer.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/extension/parquet/include/null_column_reader.hpp |only duckdb-1.0.0/duckdb/src/duckdb/extension/parquet/include/parquet_extension.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/extension/parquet/include/parquet_reader.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/extension/parquet/include/parquet_writer.hpp | 9 duckdb-1.0.0/duckdb/src/duckdb/extension/parquet/include/templated_column_reader.hpp | 7 duckdb-1.0.0/duckdb/src/duckdb/extension/parquet/parquet_crypto.cpp | 14 duckdb-1.0.0/duckdb/src/duckdb/extension/parquet/parquet_extension.cpp | 407 duckdb-1.0.0/duckdb/src/duckdb/extension/parquet/parquet_metadata.cpp | 76 duckdb-1.0.0/duckdb/src/duckdb/extension/parquet/parquet_reader.cpp | 11 duckdb-1.0.0/duckdb/src/duckdb/extension/parquet/parquet_statistics.cpp | 9 duckdb-1.0.0/duckdb/src/duckdb/extension/parquet/parquet_writer.cpp | 57 duckdb-1.0.0/duckdb/src/duckdb/extension/parquet/serialize_parquet.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/catalog/catalog.cpp | 58 duckdb-1.0.0/duckdb/src/duckdb/src/catalog/catalog_entry.cpp | 7 duckdb-1.0.0/duckdb/src/duckdb/src/catalog/catalog_entry/duck_index_entry.cpp | 12 duckdb-1.0.0/duckdb/src/duckdb/src/catalog/catalog_entry/duck_schema_entry.cpp | 78 duckdb-1.0.0/duckdb/src/duckdb/src/catalog/catalog_entry/duck_table_entry.cpp | 136 duckdb-1.0.0/duckdb/src/duckdb/src/catalog/catalog_entry/index_catalog_entry.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/catalog/catalog_entry/macro_catalog_entry.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/catalog/catalog_entry/schema_catalog_entry.cpp | 7 duckdb-1.0.0/duckdb/src/duckdb/src/catalog/catalog_entry/sequence_catalog_entry.cpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/catalog/catalog_entry/table_catalog_entry.cpp | 51 duckdb-1.0.0/duckdb/src/duckdb/src/catalog/catalog_entry/type_catalog_entry.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/catalog/catalog_entry/view_catalog_entry.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/catalog/catalog_entry_retriever.cpp |only duckdb-1.0.0/duckdb/src/duckdb/src/catalog/catalog_set.cpp | 49 duckdb-1.0.0/duckdb/src/duckdb/src/catalog/default/default_functions.cpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/catalog/default/default_views.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/catalog/dependency_manager.cpp | 142 duckdb-1.0.0/duckdb/src/duckdb/src/catalog/duck_catalog.cpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/common/adbc/nanoarrow/allocator.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/common/adbc/nanoarrow/metadata.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/common/adbc/nanoarrow/schema.cpp | 13 duckdb-1.0.0/duckdb/src/duckdb/src/common/allocator.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/common/arrow/appender/bool_data.cpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/common/arrow/appender/struct_data.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/common/arrow/appender/union_data.cpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/common/arrow/arrow_appender.cpp | 12 duckdb-1.0.0/duckdb/src/duckdb/src/common/arrow/arrow_converter.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/common/arrow/arrow_wrapper.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/common/box_renderer.cpp | 9 duckdb-1.0.0/duckdb/src/duckdb/src/common/compressed_file_system.cpp | 18 duckdb-1.0.0/duckdb/src/duckdb/src/common/enum_util.cpp | 276 duckdb-1.0.0/duckdb/src/duckdb/src/common/enums/logical_operator_type.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/common/enums/physical_operator_type.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/common/enums/relation_type.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/common/enums/statement_type.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/common/error_data.cpp | 19 duckdb-1.0.0/duckdb/src/duckdb/src/common/exception_format_value.cpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/common/extra_type_info.cpp | 94 duckdb-1.0.0/duckdb/src/duckdb/src/common/file_system.cpp | 46 duckdb-1.0.0/duckdb/src/duckdb/src/common/gzip_file_system.cpp | 52 duckdb-1.0.0/duckdb/src/duckdb/src/common/hive_partitioning.cpp | 108 duckdb-1.0.0/duckdb/src/duckdb/src/common/http_state.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/common/local_file_system.cpp | 46 duckdb-1.0.0/duckdb/src/duckdb/src/common/multi_file_list.cpp |only duckdb-1.0.0/duckdb/src/duckdb/src/common/multi_file_reader.cpp | 195 duckdb-1.0.0/duckdb/src/duckdb/src/common/operator/cast_operators.cpp | 252 duckdb-1.0.0/duckdb/src/duckdb/src/common/operator/string_cast.cpp | 27 duckdb-1.0.0/duckdb/src/duckdb/src/common/pipe_file_system.cpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/common/printer.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/common/progress_bar/progress_bar.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/common/random_engine.cpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/common/re2_regex.cpp | 10 duckdb-1.0.0/duckdb/src/duckdb/src/common/row_operations/row_aggregate.cpp | 20 duckdb-1.0.0/duckdb/src/duckdb/src/common/row_operations/row_external.cpp | 7 duckdb-1.0.0/duckdb/src/duckdb/src/common/row_operations/row_heap_gather.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/common/row_operations/row_heap_scatter.cpp | 21 duckdb-1.0.0/duckdb/src/duckdb/src/common/row_operations/row_radix_scatter.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/common/serializer/buffered_file_reader.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/common/serializer/buffered_file_writer.cpp | 17 duckdb-1.0.0/duckdb/src/duckdb/src/common/serializer/memory_stream.cpp | 9 duckdb-1.0.0/duckdb/src/duckdb/src/common/serializer/serializer.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/common/sort/comparators.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/common/sort/merge_sorter.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/common/sort/partition_state.cpp | 12 duckdb-1.0.0/duckdb/src/duckdb/src/common/sort/radix_sort.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/common/sort/sort_state.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/common/sort/sorted_block.cpp | 10 duckdb-1.0.0/duckdb/src/duckdb/src/common/string_util.cpp | 237 duckdb-1.0.0/duckdb/src/duckdb/src/common/types.cpp | 142 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/bit.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/blob.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/cast_helpers.cpp | 197 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/column/column_data_collection.cpp | 26 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/column/column_data_collection_segment.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/column/partitioned_column_data.cpp | 18 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/conflict_info.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/conflict_manager.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/data_chunk.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/date.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/decimal.cpp | 24 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/hash.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/hugeint.cpp | 19 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/row/partitioned_tuple_data.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/row/row_data_collection_scanner.cpp | 11 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/row/tuple_data_allocator.cpp | 41 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/row/tuple_data_collection.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/row/tuple_data_segment.cpp | 7 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/string_heap.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/timestamp.cpp | 24 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/uhugeint.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/uuid.cpp | 13 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/value.cpp | 84 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/vector.cpp | 171 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/vector_buffer.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/common/types/vector_cache.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/common/vector_operations/generators.cpp | 20 duckdb-1.0.0/duckdb/src/duckdb/src/common/vector_operations/is_distinct_from.cpp | 20 duckdb-1.0.0/duckdb/src/duckdb/src/common/vector_operations/null_operations.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/common/vector_operations/numeric_inplace_operators.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/aggregate/distributive/approx_count.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/aggregate/distributive/arg_min_max.cpp | 23 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/aggregate/distributive/bitagg.cpp | 21 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/aggregate/distributive/bitstring_agg.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/aggregate/distributive/minmax.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/aggregate/distributive/sum.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/aggregate/holistic/approximate_quantile.cpp | 17 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/aggregate/holistic/mode.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/aggregate/holistic/quantile.cpp | 27 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/aggregate/holistic/reservoir_quantile.cpp | 22 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/function_list.cpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/lambda_functions.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/array/array_functions.cpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/bit/bitstring.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/blob/create_sort_key.cpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/date/date_part.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/date/epoch.cpp | 17 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/date/strftime.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/date/to_interval.cpp | 19 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/debug/vector_type.cpp | 11 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/generic/current_setting.cpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/generic/system_functions.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/list/array_slice.cpp | 51 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/list/list_reduce.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/list/list_sort.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/list/list_value.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/list/range.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/map/map.cpp | 58 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/map/map_concat.cpp | 21 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/map/map_entries.cpp | 43 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/map/map_extract.cpp | 37 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/map/map_keys_values.cpp | 20 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/math/numeric.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/operators/bitwise.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/random/setseed.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/string/bar.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/string/chr.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/string/hex.cpp | 26 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/string/instr.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/string/pad.cpp | 16 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/string/repeat.cpp | 22 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/string/string_split.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/string/to_base.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/string/translate.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/string/trim.cpp | 22 duckdb-1.0.0/duckdb/src/duckdb/src/core_functions/scalar/string/unicode.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/execution/adaptive_filter.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/execution/aggregate_hashtable.cpp | 25 duckdb-1.0.0/duckdb/src/duckdb/src/execution/index/art/art.cpp | 12 duckdb-1.0.0/duckdb/src/duckdb/src/execution/index/bound_index.cpp |only duckdb-1.0.0/duckdb/src/duckdb/src/execution/index/unbound_index.cpp |only duckdb-1.0.0/duckdb/src/duckdb/src/execution/join_hashtable.cpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/aggregate/aggregate_object.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/aggregate/distinct_aggregate_data.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_hash_aggregate.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_streaming_window.cpp | 45 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_ungrouped_aggregate.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_window.cpp | 19 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/buffer_manager/csv_buffer.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/buffer_manager/csv_buffer_manager.cpp | 14 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/buffer_manager/csv_file_handle.cpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/scanner/base_scanner.cpp | 26 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/scanner/column_count_scanner.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/scanner/string_value_scanner.cpp | 572 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/csv_sniffer.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/dialect_detection.cpp | 61 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/header_detection.cpp | 37 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/type_detection.cpp | 257 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/table_function/csv_file_scanner.cpp | 49 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/table_function/global_csv_state.cpp | 24 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/util/csv_error.cpp | 14 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/util/csv_reader_options.cpp | 55 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/helper/physical_buffered_collector.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/helper/physical_execute.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/helper/physical_load.cpp | 26 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/helper/physical_reservoir_sample.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/helper/physical_update_extensions.cpp |only duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/helper/physical_verify_vector.cpp | 21 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/join/physical_asof_join.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/join/physical_hash_join.cpp | 18 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/join/physical_iejoin.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/join/physical_left_delim_join.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/join/physical_piecewise_merge_join.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/join/physical_range_join.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/order/physical_order.cpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_batch_copy_to_file.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_batch_insert.cpp | 33 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_copy_database.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_copy_to_file.cpp | 133 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_delete.cpp | 25 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_export.cpp | 100 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_insert.cpp | 74 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_update.cpp | 43 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/projection/physical_unnest.cpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/scan/physical_column_data_scan.cpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/scan/physical_expression_scan.cpp | 29 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/schema/physical_attach.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/schema/physical_create_art_index.cpp | 18 duckdb-1.0.0/duckdb/src/duckdb/src/execution/operator/set/physical_recursive_cte.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/execution/perfect_aggregate_hashtable.cpp | 9 duckdb-1.0.0/duckdb/src/duckdb/src/execution/physical_operator.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/execution/physical_plan/plan_column_data_get.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/execution/physical_plan/plan_comparison_join.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/execution/physical_plan/plan_copy_to_file.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/execution/physical_plan/plan_create_table.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/execution/physical_plan/plan_cte.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/execution/physical_plan/plan_delete.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/execution/physical_plan/plan_delim_get.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/execution/physical_plan/plan_distinct.cpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/execution/physical_plan/plan_expression_get.cpp | 9 duckdb-1.0.0/duckdb/src/duckdb/src/execution/physical_plan/plan_insert.cpp | 11 duckdb-1.0.0/duckdb/src/duckdb/src/execution/physical_plan/plan_recursive_cte.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/execution/physical_plan/plan_simple.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/execution/physical_plan/plan_top_n.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/execution/physical_plan/plan_update.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/execution/physical_plan/plan_window.cpp | 25 duckdb-1.0.0/duckdb/src/duckdb/src/execution/physical_plan_generator.cpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/execution/radix_partitioned_hashtable.cpp | 71 duckdb-1.0.0/duckdb/src/duckdb/src/execution/reservoir_sample.cpp | 73 duckdb-1.0.0/duckdb/src/duckdb/src/execution/window_executor.cpp | 80 duckdb-1.0.0/duckdb/src/duckdb/src/execution/window_segment_tree.cpp | 7 duckdb-1.0.0/duckdb/src/duckdb/src/function/aggregate/distributive/first.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/function/cast/string_cast.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/function/cast_rules.cpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/function/function.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/function/function_binder.cpp | 13 duckdb-1.0.0/duckdb/src/duckdb/src/function/pragma/pragma_functions.cpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/function/pragma/pragma_queries.cpp | 7 duckdb-1.0.0/duckdb/src/duckdb/src/function/scalar/compressed_materialization/compress_string.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/function/scalar/list/list_extract.cpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/function/scalar/list/list_resize.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/function/scalar/list/list_select.cpp | 15 duckdb-1.0.0/duckdb/src/duckdb/src/function/scalar/list/list_zip.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/function/scalar/operators/add.cpp | 28 duckdb-1.0.0/duckdb/src/duckdb/src/function/scalar/sequence/nextval.cpp | 125 duckdb-1.0.0/duckdb/src/duckdb/src/function/scalar/strftime_format.cpp | 100 duckdb-1.0.0/duckdb/src/duckdb/src/function/scalar/string/caseconvert.cpp | 24 duckdb-1.0.0/duckdb/src/duckdb/src/function/scalar/string/contains.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/function/scalar/string/length.cpp | 18 duckdb-1.0.0/duckdb/src/duckdb/src/function/scalar/string/regexp/regexp_extract_all.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/function/scalar/string/strip_accents.cpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/function/scalar/string/substring.cpp | 20 duckdb-1.0.0/duckdb/src/duckdb/src/function/scalar/struct/struct_extract.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/function/scalar_function.cpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/arrow.cpp | 22 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/arrow_conversion.cpp | 154 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/copy_csv.cpp | 122 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/glob.cpp | 26 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/read_csv.cpp | 51 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/read_file.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/repeat.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/repeat_row.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/sniff_csv.cpp | 12 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/system/duckdb_columns.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/system/duckdb_constraints.cpp | 47 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/system/duckdb_databases.cpp | 7 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/system/duckdb_dependencies.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/system/duckdb_extensions.cpp | 59 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/system/duckdb_functions.cpp | 10 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/system/duckdb_indexes.cpp | 13 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/system/duckdb_memory.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/system/duckdb_schemas.cpp | 9 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/system/duckdb_sequences.cpp | 11 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/system/duckdb_tables.cpp | 28 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/system/duckdb_temporary_files.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/system/duckdb_types.cpp | 17 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/system/duckdb_views.cpp | 13 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/system/duckdb_which_secret.cpp |only duckdb-1.0.0/duckdb/src/duckdb/src/function/table/system/pragma_database_size.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/system/pragma_metadata_info.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/system/pragma_storage_info.cpp | 12 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/system_functions.cpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/table_scan.cpp | 31 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/unnest.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/function/table/version/pragma_version.cpp | 10 duckdb-1.0.0/duckdb/src/duckdb/src/function/table_function.cpp | 9 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb.h | 156 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog.hpp | 11 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/duck_index_entry.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/duck_schema_entry.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/duck_table_entry.hpp | 14 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/function_entry.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/schema_catalog_entry.hpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/sequence_catalog_entry.hpp | 7 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/table_catalog_entry.hpp | 7 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/type_catalog_entry.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry_retriever.hpp |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_transaction.hpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/catalog/dependency.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/catalog/dependency_list.hpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/catalog/dependency_manager.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/catalog/standard_entry.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/appender/append_data.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/appender/enum_data.hpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/appender/map_data.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/appender/scalar_data.hpp | 15 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/appender/varchar_data.hpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/arrow_buffer.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/bit_utils.hpp | 161 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/bitpacking.hpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/constants.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/enable_shared_from_this_ipp.hpp |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/enum_util.hpp | 54 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/enums/checkpoint_type.hpp |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/enums/copy_overwrite_mode.hpp |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/enums/logical_operator_type.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/enums/physical_operator_type.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/enums/relation_type.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/enums/scan_options.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/enums/scan_vector_type.hpp |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/enums/statement_type.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/enums/tableref_type.hpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/enums/undo_flags.hpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/exception.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/extra_type_info.hpp | 16 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/file_opener.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/file_system.hpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/gzip_file_system.hpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/helper.hpp | 23 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/hive_partitioning.hpp | 20 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/http_state.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/insertion_order_preserving_map.hpp |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/multi_file_list.hpp |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/multi_file_reader.hpp | 189 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/multi_file_reader_options.hpp | 10 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/numeric_utils.hpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/operator/add.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/operator/decimal_cast_operators.hpp | 233 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/operator/integer_cast_operator.hpp | 9 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/operator/numeric_cast.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/optional_ptr.hpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/optionally_owned_ptr.hpp |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/platform.h | 7 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/radix.hpp | 16 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/re2_regex.hpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/row_operations/row_operations.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/binary_deserializer.hpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/binary_serializer.hpp | 14 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/deserializer.hpp | 36 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/serialization_traits.hpp | 65 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/serializer.hpp | 58 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/shared_ptr.hpp | 39 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/shared_ptr_ipp.hpp |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/sort/duckdb_pdqsort.hpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/string.hpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/string_util.hpp | 18 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/types.hpp | 16 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/types/bit.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/types/cast_helpers.hpp | 258 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/types/datetime.hpp | 47 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/types/hash.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/types/row/tuple_data_segment.hpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/types/selection_vector.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/types/string_type.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/types/timestamp.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/types/validity_mask.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/types/value.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/types/vector.hpp | 35 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/unique_ptr.hpp | 13 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/vector.hpp | 11 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/vector_size.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/common/weak_ptr_ipp.hpp |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/core_functions/aggregate/sum_helpers.hpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/core_functions/scalar/date_functions.hpp | 18 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/adaptive_filter.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/expression_executor.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/art.hpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/index/bound_index.hpp |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/index/index_type.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/index/unbound_index.hpp |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/merge_sort_tree.hpp | 42 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_streaming_window.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_window.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/base_scanner.hpp | 13 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/column_count_scanner.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_error.hpp | 12 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_reader_options.hpp | 13 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_sniffer.hpp | 28 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/string_value_scanner.hpp | 110 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_update_extensions.hpp |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_batch_insert.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_copy_to_file.hpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_delete.hpp | 10 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_export.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_insert.hpp | 13 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_update.hpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_column_data_scan.hpp | 9 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_expression_scan.hpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/set/physical_cte.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/set/physical_recursive_cte.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/physical_plan_generator.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/execution/reservoir_sample.hpp | 71 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/function/function.hpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/function/function_binder.hpp | 9 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/function/replacement_scan.hpp | 27 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/regexp.hpp | 11 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/sequence_functions.hpp | 7 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/strftime_format.hpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/string_functions.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/function/scalar_function.hpp | 13 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/function/table/arrow.hpp | 10 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/function/table/read_csv.hpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/function/table/system_functions.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/function/table_function.hpp | 17 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/logging |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/appender.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/attached_database.hpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/buffered_data/buffered_data.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/capi/cast/generic.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/client_config.hpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/client_context.hpp | 20 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/client_context_state.hpp | 12 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/client_context_wrapper.hpp |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/client_data.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/config.hpp | 43 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/connection_manager.hpp | 24 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/database.hpp | 45 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/extension.hpp | 25 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/extension_entries.hpp | 165 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/extension_helper.hpp | 91 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/extension_install_info.hpp |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/extension_util.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/external_dependencies.hpp | 50 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/materialized_query_result.hpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/relation.hpp | 11 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/relation/materialized_relation.hpp |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/relation/query_relation.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/relation/table_function_relation.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/relation/table_relation.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/relation/value_relation.hpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/relation/view_relation.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/main/settings.hpp | 67 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/optimizer/filter_pushdown.hpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/cost_model.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/join_node.hpp | 23 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/join_order_optimizer.hpp | 51 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/plan_enumerator.hpp | 27 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/query_graph_manager.hpp | 12 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/optimizer/matcher/set_matcher.hpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/optimizer/optimizer_extension.hpp | 12 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/list.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/timestamp_comparison.hpp |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parallel/event.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parallel/interrupt.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parallel/meta_pipeline.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parallel/pipeline.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parallel/task.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/base_expression.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/column_definition.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_info.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_scalar_function_info.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_table_function_info.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_table_info.hpp | 12 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/attach_info.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/comment_on_column_info.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/copy_info.hpp | 22 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_info.hpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_schema_info.hpp | 33 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_sequence_info.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_type_info.hpp | 13 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_view_info.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/detach_info.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/drop_info.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/exported_table_data.hpp | 7 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/load_info.hpp | 11 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/parse_info.hpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/pragma_info.hpp | 13 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/transaction_info.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/update_extensions_info.hpp |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/vacuum_info.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/parser_extension.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/query_node.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/sql_statement.hpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/alter_statement.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/attach_statement.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/call_statement.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/copy_database_statement.hpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/copy_statement.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/detach_statement.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/drop_statement.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/execute_statement.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/explain_statement.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/export_statement.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/extension_statement.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/insert_statement.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/list.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/load_statement.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/logical_plan_statement.hpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/multi_statement.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/pragma_statement.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/prepare_statement.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/relation_statement.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/select_statement.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/set_statement.hpp | 10 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/transaction_statement.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/update_extensions_statement.hpp |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/vacuum_statement.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref.hpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/column_data_ref.hpp |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/list.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/table_function_ref.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/tokens.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/parser/transformer.hpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/planner/bind_context.hpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/planner/binder.hpp | 56 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/planner/bound_tokens.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder.hpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/alter_binder.hpp | 13 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/having_binder.hpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/index_binder.hpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/planner/logical_operator.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_column_data_get.hpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_comparison_join.hpp | 14 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_copy_to_file.hpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_delete.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_export.hpp | 7 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_insert.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_top_n.hpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_update.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/planner/parsed_data/bound_create_table_info.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/planner/table_binding.hpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_column_data_ref.hpp |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/list.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer/block_handle.hpp | 9 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer/buffer_pool.hpp | 23 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer_manager.hpp | 18 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/row_group_writer.hpp | 17 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/table_data_writer.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint_manager.hpp | 37 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/alp/algorithm/alp.hpp | 15 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/alp/alp_compress.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/alp/alp_constants.hpp | 9 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/alp/alp_fetch.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/alp/alp_utils.hpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/alprd/algorithm/alprd.hpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/alprd/alprd_analyze.hpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/alprd/alprd_compress.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/alprd/alprd_fetch.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/algorithm/bit_reader.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/chimp_fetch.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/patas/patas_fetch.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/data_table.hpp | 71 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/index.hpp | 128 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/object_cache.hpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/optimistic_data_writer.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/partial_block_manager.hpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/standard_buffer_manager.hpp | 31 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/storage_extension.hpp | 7 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/storage_info.hpp | 9 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/storage_lock.hpp | 30 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/storage_manager.hpp | 35 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/string_uncompressed.hpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/table/append_state.hpp | 12 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/table/array_column_data.hpp | 9 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/table/column_data.hpp | 39 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/table/column_segment.hpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/table/data_table_info.hpp | 38 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/table/delete_state.hpp |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/table/list_column_data.hpp | 9 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/table/row_group.hpp | 17 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/table/row_group_collection.hpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/table/scan_state.hpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/table/segment_tree.hpp | 10 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/table/standard_column_data.hpp | 12 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/table/struct_column_data.hpp | 9 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/table/table_index_list.hpp | 26 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/table/table_statistics.hpp | 7 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/table/update_state.hpp |only duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/table/validity_column_data.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/temporary_file_manager.hpp | 24 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/storage/write_ahead_log.hpp | 15 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/transaction/duck_transaction.hpp | 23 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/transaction/duck_transaction_manager.hpp | 37 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/transaction/local_storage.hpp | 13 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/transaction/meta_transaction.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/transaction/transaction.hpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/include/duckdb/transaction/undo_buffer.hpp | 10 duckdb-1.0.0/duckdb/src/duckdb/src/main/appender.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/main/attached_database.cpp | 21 duckdb-1.0.0/duckdb/src/duckdb/src/main/capi/appender-c.cpp | 7 duckdb-1.0.0/duckdb/src/duckdb/src/main/capi/arrow-c.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/main/capi/helper-c.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/main/capi/replacement_scan-c.cpp | 11 duckdb-1.0.0/duckdb/src/duckdb/src/main/capi/result-c.cpp | 24 duckdb-1.0.0/duckdb/src/duckdb/src/main/capi/stream-c.cpp | 25 duckdb-1.0.0/duckdb/src/duckdb/src/main/capi/table_function-c.cpp | 20 duckdb-1.0.0/duckdb/src/duckdb/src/main/client_context.cpp | 55 duckdb-1.0.0/duckdb/src/duckdb/src/main/client_context_file_opener.cpp | 31 duckdb-1.0.0/duckdb/src/duckdb/src/main/client_context_wrapper.cpp |only duckdb-1.0.0/duckdb/src/duckdb/src/main/client_data.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/main/config.cpp | 75 duckdb-1.0.0/duckdb/src/duckdb/src/main/connection.cpp | 21 duckdb-1.0.0/duckdb/src/duckdb/src/main/connection_manager.cpp | 32 duckdb-1.0.0/duckdb/src/duckdb/src/main/database.cpp | 56 duckdb-1.0.0/duckdb/src/duckdb/src/main/db_instance_cache.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/main/extension.cpp | 56 duckdb-1.0.0/duckdb/src/duckdb/src/main/extension/extension_helper.cpp | 399 duckdb-1.0.0/duckdb/src/duckdb/src/main/extension/extension_install.cpp | 390 duckdb-1.0.0/duckdb/src/duckdb/src/main/extension/extension_load.cpp | 272 duckdb-1.0.0/duckdb/src/duckdb/src/main/extension/extension_util.cpp | 10 duckdb-1.0.0/duckdb/src/duckdb/src/main/extension_install_info.cpp |only duckdb-1.0.0/duckdb/src/duckdb/src/main/materialized_query_result.cpp | 11 duckdb-1.0.0/duckdb/src/duckdb/src/main/query_profiler.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/main/relation.cpp | 68 duckdb-1.0.0/duckdb/src/duckdb/src/main/relation/create_view_relation.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/main/relation/materialized_relation.cpp |only duckdb-1.0.0/duckdb/src/duckdb/src/main/relation/query_relation.cpp | 21 duckdb-1.0.0/duckdb/src/duckdb/src/main/relation/read_csv_relation.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/main/relation/table_relation.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/main/relation/value_relation.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/main/relation/view_relation.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/main/relation/write_csv_relation.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/main/relation/write_parquet_relation.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/main/secret/secret.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/main/settings/settings.cpp | 180 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/common_aggregate_optimizer.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/filter_combiner.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/filter_pushdown.cpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/join_order/cardinality_estimator.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/join_order/cost_model.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/join_order/join_node.cpp | 31 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/join_order/join_order_optimizer.cpp | 13 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/join_order/plan_enumerator.cpp | 139 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/join_order/query_graph_manager.cpp | 129 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/join_order/relation_manager.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/join_order/relation_statistics_helper.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/optimizer.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_aggregate.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_cross_product.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_left_join.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_mark_join.cpp | 12 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_projection.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_semi_anti_join.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_set_operation.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_single_join.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/remove_duplicate_groups.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/remove_unused_columns.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/rule/arithmetic_simplification.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/rule/case_simplification.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/rule/conjunction_simplification.cpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/rule/constant_folding.cpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/rule/distributivity.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/rule/empty_needle_removal.cpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/rule/enum_comparison.cpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/rule/in_clause_simplification_rule.cpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/rule/move_constants.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/rule/ordered_aggregate_optimizer.cpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/rule/timestamp_comparison.cpp |only duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/statistics/expression/propagate_conjunction.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/statistics/expression/propagate_operator.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_filter.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_get.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_join.cpp | 9 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_set_operation.cpp | 3 duckdb-1.0.0/duckdb/src/duckdb/src/optimizer/topn_optimizer.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/parallel/executor.cpp | 21 duckdb-1.0.0/duckdb/src/duckdb/src/parallel/meta_pipeline.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/parallel/pipeline.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/parallel/task_scheduler.cpp | 12 duckdb-1.0.0/duckdb/src/duckdb/src/parser/column_definition.cpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/parser/constraints/foreign_key_constraint.cpp | 14 duckdb-1.0.0/duckdb/src/duckdb/src/parser/expression/star_expression.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/parser/parsed_data/alter_scalar_function_info.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/parser/parsed_data/alter_table_function_info.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/parser/parsed_data/alter_table_info.cpp | 183 duckdb-1.0.0/duckdb/src/duckdb/src/parser/parsed_data/attach_info.cpp | 23 duckdb-1.0.0/duckdb/src/duckdb/src/parser/parsed_data/comment_on_column_info.cpp | 17 duckdb-1.0.0/duckdb/src/duckdb/src/parser/parsed_data/copy_info.cpp |only duckdb-1.0.0/duckdb/src/duckdb/src/parser/parsed_data/create_index_info.cpp | 18 duckdb-1.0.0/duckdb/src/duckdb/src/parser/parsed_data/create_info.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/parser/parsed_data/create_schema_info.cpp |only duckdb-1.0.0/duckdb/src/duckdb/src/parser/parsed_data/create_sequence_info.cpp | 22 duckdb-1.0.0/duckdb/src/duckdb/src/parser/parsed_data/create_table_info.cpp | 16 duckdb-1.0.0/duckdb/src/duckdb/src/parser/parsed_data/create_type_info.cpp | 53 duckdb-1.0.0/duckdb/src/duckdb/src/parser/parsed_data/create_view_info.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/parser/parsed_data/detach_info.cpp | 12 duckdb-1.0.0/duckdb/src/duckdb/src/parser/parsed_data/drop_info.cpp | 21 duckdb-1.0.0/duckdb/src/duckdb/src/parser/parsed_data/load_info.cpp |only duckdb-1.0.0/duckdb/src/duckdb/src/parser/parsed_data/parse_info.cpp |only duckdb-1.0.0/duckdb/src/duckdb/src/parser/parsed_data/pragma_info.cpp |only duckdb-1.0.0/duckdb/src/duckdb/src/parser/parsed_data/transaction_info.cpp | 22 duckdb-1.0.0/duckdb/src/duckdb/src/parser/parsed_data/vacuum_info.cpp | 20 duckdb-1.0.0/duckdb/src/duckdb/src/parser/parsed_expression_iterator.cpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/parser/parser.cpp | 9 duckdb-1.0.0/duckdb/src/duckdb/src/parser/query_node.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/parser/statement/alter_statement.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/parser/statement/attach_statement.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/parser/statement/call_statement.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/parser/statement/copy_statement.cpp | 92 duckdb-1.0.0/duckdb/src/duckdb/src/parser/statement/detach_statement.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/parser/statement/drop_statement.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/parser/statement/execute_statement.cpp | 15 duckdb-1.0.0/duckdb/src/duckdb/src/parser/statement/explain_statement.cpp | 19 duckdb-1.0.0/duckdb/src/duckdb/src/parser/statement/export_statement.cpp | 18 duckdb-1.0.0/duckdb/src/duckdb/src/parser/statement/extension_statement.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/parser/statement/load_statement.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/parser/statement/multi_statement.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/parser/statement/pragma_statement.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/parser/statement/prepare_statement.cpp | 13 duckdb-1.0.0/duckdb/src/duckdb/src/parser/statement/relation_statement.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/parser/statement/set_statement.cpp | 37 duckdb-1.0.0/duckdb/src/duckdb/src/parser/statement/transaction_statement.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/parser/statement/update_extensions_statement.cpp |only duckdb-1.0.0/duckdb/src/duckdb/src/parser/statement/vacuum_statement.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/parser/tableref.cpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/parser/tableref/column_data_ref.cpp |only duckdb-1.0.0/duckdb/src/duckdb/src/parser/transform/expression/transform_boolean_test.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/parser/transform/expression/transform_cast.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/parser/transform/expression/transform_interval.cpp | 7 duckdb-1.0.0/duckdb/src/duckdb/src/parser/transform/expression/transform_param_ref.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/parser/transform/expression/transform_positional_reference.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/parser/transform/expression/transform_subquery.cpp | 16 duckdb-1.0.0/duckdb/src/duckdb/src/parser/transform/helpers/nodetype_to_string.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/parser/transform/helpers/transform_typename.cpp | 160 duckdb-1.0.0/duckdb/src/duckdb/src/parser/transform/statement/transform_checkpoint.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/parser/transform/statement/transform_copy.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/parser/transform/statement/transform_load.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/parser/transform/statement/transform_update.cpp | 19 duckdb-1.0.0/duckdb/src/duckdb/src/parser/transformer.cpp | 7 duckdb-1.0.0/duckdb/src/duckdb/src/planner/bind_context.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder.cpp | 80 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/expression/bind_aggregate_expression.cpp | 43 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/expression/bind_cast_expression.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/expression/bind_function_expression.cpp | 20 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/query_node/bind_select_node.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/query_node/plan_setop.cpp | 37 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/query_node/plan_subquery.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_attach.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_call.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_copy.cpp | 31 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_copy_database.cpp | 89 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_create.cpp | 180 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_create_table.cpp | 172 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_delete.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_detach.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_drop.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_execute.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_explain.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_export.cpp | 19 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_extension.cpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_insert.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_load.cpp | 13 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_logical_plan.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_pragma.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_prepare.cpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_select.cpp | 1 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_set.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_simple.cpp | 10 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_update.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_update_extensions.cpp |only duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/statement/bind_vacuum.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/tableref/bind_basetableref.cpp | 61 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/tableref/bind_column_data_ref.cpp |only duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/tableref/bind_pivot.cpp | 11 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/tableref/bind_table_function.cpp | 54 duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/tableref/plan_column_data_ref.cpp |only duckdb-1.0.0/duckdb/src/duckdb/src/planner/binder/tableref/plan_joinref.cpp | 40 duckdb-1.0.0/duckdb/src/duckdb/src/planner/bound_parameter_map.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/planner/bound_result_modifier.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/planner/expression/bound_expression.cpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/planner/expression_binder.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/planner/expression_binder/alter_binder.cpp | 31 duckdb-1.0.0/duckdb/src/duckdb/src/planner/expression_binder/base_select_binder.cpp | 29 duckdb-1.0.0/duckdb/src/duckdb/src/planner/expression_binder/having_binder.cpp | 53 duckdb-1.0.0/duckdb/src/duckdb/src/planner/expression_binder/index_binder.cpp | 33 duckdb-1.0.0/duckdb/src/duckdb/src/planner/expression_binder/order_binder.cpp | 11 duckdb-1.0.0/duckdb/src/duckdb/src/planner/expression_iterator.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/planner/filter/constant_filter.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/planner/operator/logical_column_data_get.cpp | 18 duckdb-1.0.0/duckdb/src/duckdb/src/planner/operator/logical_copy_to_file.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/planner/operator/logical_delete.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/planner/operator/logical_get.cpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/planner/operator/logical_insert.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/planner/operator/logical_top_n.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/planner/operator/logical_update.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/planner/planner.cpp | 44 duckdb-1.0.0/duckdb/src/duckdb/src/planner/subquery/flatten_dependent_join.cpp | 43 duckdb-1.0.0/duckdb/src/duckdb/src/planner/table_binding.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/storage/arena_allocator.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/storage/buffer/block_handle.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/storage/buffer/block_manager.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/storage/buffer/buffer_handle.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/storage/buffer/buffer_pool.cpp | 105 duckdb-1.0.0/duckdb/src/duckdb/src/storage/buffer/buffer_pool_reservation.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/storage/buffer_manager.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/storage/checkpoint/row_group_writer.cpp | 9 duckdb-1.0.0/duckdb/src/duckdb/src/storage/checkpoint/table_data_writer.cpp | 9 duckdb-1.0.0/duckdb/src/duckdb/src/storage/checkpoint_manager.cpp | 172 duckdb-1.0.0/duckdb/src/duckdb/src/storage/compression/bitpacking.cpp | 32 duckdb-1.0.0/duckdb/src/duckdb/src/storage/compression/dictionary_compression.cpp | 16 duckdb-1.0.0/duckdb/src/duckdb/src/storage/compression/fixed_size_uncompressed.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/storage/compression/fsst.cpp | 18 duckdb-1.0.0/duckdb/src/duckdb/src/storage/compression/rle.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/storage/compression/string_uncompressed.cpp | 9 duckdb-1.0.0/duckdb/src/duckdb/src/storage/compression/validity_uncompressed.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/storage/data_table.cpp | 355 duckdb-1.0.0/duckdb/src/duckdb/src/storage/index.cpp | 108 duckdb-1.0.0/duckdb/src/duckdb/src/storage/local_storage.cpp | 88 duckdb-1.0.0/duckdb/src/duckdb/src/storage/metadata/metadata_manager.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/storage/metadata/metadata_writer.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/storage/optimistic_data_writer.cpp | 20 duckdb-1.0.0/duckdb/src/duckdb/src/storage/partial_block_manager.cpp | 12 duckdb-1.0.0/duckdb/src/duckdb/src/storage/serialization/serialize_create_info.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/storage/serialization/serialize_dependency.cpp |only duckdb-1.0.0/duckdb/src/duckdb/src/storage/serialization/serialize_extension_install_info.cpp |only duckdb-1.0.0/duckdb/src/duckdb/src/storage/serialization/serialize_logical_operator.cpp | 7 duckdb-1.0.0/duckdb/src/duckdb/src/storage/serialization/serialize_nodes.cpp | 80 duckdb-1.0.0/duckdb/src/duckdb/src/storage/serialization/serialize_parse_info.cpp | 21 duckdb-1.0.0/duckdb/src/duckdb/src/storage/serialization/serialize_tableref.cpp | 16 duckdb-1.0.0/duckdb/src/duckdb/src/storage/serialization/serialize_types.cpp | 7 duckdb-1.0.0/duckdb/src/duckdb/src/storage/single_file_block_manager.cpp | 41 duckdb-1.0.0/duckdb/src/duckdb/src/storage/standard_buffer_manager.cpp | 108 duckdb-1.0.0/duckdb/src/duckdb/src/storage/statistics/column_statistics.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/src/storage/statistics/distinct_statistics.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/storage/storage_info.cpp | 88 duckdb-1.0.0/duckdb/src/duckdb/src/storage/storage_lock.cpp | 94 duckdb-1.0.0/duckdb/src/duckdb/src/storage/storage_manager.cpp | 124 duckdb-1.0.0/duckdb/src/duckdb/src/storage/table/array_column_data.cpp | 25 duckdb-1.0.0/duckdb/src/duckdb/src/storage/table/column_data.cpp | 117 duckdb-1.0.0/duckdb/src/duckdb/src/storage/table/column_data_checkpointer.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/storage/table/column_segment.cpp | 11 duckdb-1.0.0/duckdb/src/duckdb/src/storage/table/list_column_data.cpp | 29 duckdb-1.0.0/duckdb/src/duckdb/src/storage/table/row_group.cpp | 61 duckdb-1.0.0/duckdb/src/duckdb/src/storage/table/row_group_collection.cpp | 90 duckdb-1.0.0/duckdb/src/duckdb/src/storage/table/row_version_manager.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/src/storage/table/standard_column_data.cpp | 44 duckdb-1.0.0/duckdb/src/duckdb/src/storage/table/struct_column_data.cpp | 39 duckdb-1.0.0/duckdb/src/duckdb/src/storage/table/table_statistics.cpp | 35 duckdb-1.0.0/duckdb/src/duckdb/src/storage/table/update_segment.cpp | 12 duckdb-1.0.0/duckdb/src/duckdb/src/storage/table/validity_column_data.cpp | 5 duckdb-1.0.0/duckdb/src/duckdb/src/storage/table_index_list.cpp | 111 duckdb-1.0.0/duckdb/src/duckdb/src/storage/temporary_file_manager.cpp | 128 duckdb-1.0.0/duckdb/src/duckdb/src/storage/temporary_memory_manager.cpp | 8 duckdb-1.0.0/duckdb/src/duckdb/src/storage/wal_replay.cpp | 49 duckdb-1.0.0/duckdb/src/duckdb/src/storage/write_ahead_log.cpp | 64 duckdb-1.0.0/duckdb/src/duckdb/src/transaction/cleanup_state.cpp | 11 duckdb-1.0.0/duckdb/src/duckdb/src/transaction/commit_state.cpp | 25 duckdb-1.0.0/duckdb/src/duckdb/src/transaction/duck_transaction.cpp | 75 duckdb-1.0.0/duckdb/src/duckdb/src/transaction/duck_transaction_manager.cpp | 281 duckdb-1.0.0/duckdb/src/duckdb/src/transaction/meta_transaction.cpp | 20 duckdb-1.0.0/duckdb/src/duckdb/src/transaction/rollback_state.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/src/transaction/transaction.cpp | 14 duckdb-1.0.0/duckdb/src/duckdb/src/transaction/undo_buffer.cpp | 54 duckdb-1.0.0/duckdb/src/duckdb/third_party/concurrentqueue/concurrentqueue.h | 10 duckdb-1.0.0/duckdb/src/duckdb/third_party/fsst/fsst.h | 2 duckdb-1.0.0/duckdb/src/duckdb/third_party/jaro_winkler/details/common.hpp | 18 duckdb-1.0.0/duckdb/src/duckdb/third_party/jaro_winkler/details/intrinsics.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/third_party/jaro_winkler/details/jaro_impl.hpp | 36 duckdb-1.0.0/duckdb/src/duckdb/third_party/libpg_query/include/nodes/nodes.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/third_party/libpg_query/include/nodes/parsenodes.hpp | 12 duckdb-1.0.0/duckdb/src/duckdb/third_party/libpg_query/include/parser/gram.hpp | 1587 duckdb-1.0.0/duckdb/src/duckdb/third_party/libpg_query/include/parser/kwlist.hpp | 3 duckdb-1.0.0/duckdb/src/duckdb/third_party/libpg_query/include/utils/datetime.hpp | 1 duckdb-1.0.0/duckdb/src/duckdb/third_party/libpg_query/pg_functions.cpp | 19 duckdb-1.0.0/duckdb/src/duckdb/third_party/libpg_query/src_backend_parser_gram.cpp |47503 +++++----- duckdb-1.0.0/duckdb/src/duckdb/third_party/mbedtls/library/constant_time.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/third_party/parquet/parquet_types.cpp | 3 duckdb-1.0.0/duckdb/src/duckdb/third_party/parquet/parquet_types.h | 3 duckdb-1.0.0/duckdb/src/duckdb/third_party/re2/re2/compile.cc | 4 duckdb-1.0.0/duckdb/src/duckdb/third_party/re2/re2/dfa.cc | 11 duckdb-1.0.0/duckdb/src/duckdb/third_party/re2/re2/onepass.cc | 7 duckdb-1.0.0/duckdb/src/duckdb/third_party/re2/re2/prog.cc | 20 duckdb-1.0.0/duckdb/src/duckdb/third_party/re2/re2/prog.h | 16 duckdb-1.0.0/duckdb/src/duckdb/third_party/tdigest/t_digest.hpp | 12 duckdb-1.0.0/duckdb/src/duckdb/third_party/utf8proc/include/utf8proc.hpp | 2 duckdb-1.0.0/duckdb/src/duckdb/third_party/yyjson |only duckdb-1.0.0/duckdb/src/duckdb/ub_src_catalog.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/ub_src_common.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/ub_src_execution_index.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/ub_src_execution_operator_helper.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/ub_src_function_table_system.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/ub_src_main.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/ub_src_main_relation.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/ub_src_optimizer.cpp | 16 duckdb-1.0.0/duckdb/src/duckdb/ub_src_optimizer_join_order.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/ub_src_optimizer_rule.cpp | 6 duckdb-1.0.0/duckdb/src/duckdb/ub_src_parser_parsed_data.cpp | 10 duckdb-1.0.0/duckdb/src/duckdb/ub_src_parser_statement.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/ub_src_parser_tableref.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/ub_src_planner_binder_statement.cpp | 2 duckdb-1.0.0/duckdb/src/duckdb/ub_src_planner_binder_tableref.cpp | 4 duckdb-1.0.0/duckdb/src/duckdb/ub_src_storage_serialization.cpp | 4 duckdb-1.0.0/duckdb/src/include/rapi.hpp | 13 duckdb-1.0.0/duckdb/src/include/reltoaltrep.hpp | 1 duckdb-1.0.0/duckdb/src/include/rfuns_extension.hpp | 3 duckdb-1.0.0/duckdb/src/include/sources.mk | 2 duckdb-1.0.0/duckdb/src/register.cpp | 6 duckdb-1.0.0/duckdb/src/relational.cpp | 41 duckdb-1.0.0/duckdb/src/reltoaltrep.cpp | 15 duckdb-1.0.0/duckdb/src/rfuns.cpp | 186 duckdb-1.0.0/duckdb/src/statement.cpp | 2 duckdb-1.0.0/duckdb/src/transform.cpp | 52 duckdb-1.0.0/duckdb/src/types.cpp | 3 duckdb-1.0.0/duckdb/src/utils.cpp | 31 duckdb-1.0.0/duckdb/tests/testthat/_snaps/backend-dbplyr__duckdb_connection.md | 2 duckdb-1.0.0/duckdb/tests/testthat/_snaps/types.md | 16 duckdb-1.0.0/duckdb/tests/testthat/test-backend-dbplyr__duckdb_connection.R | 109 duckdb-1.0.0/duckdb/tests/testthat/test-map.R |only duckdb-1.0.0/duckdb/tests/testthat/test-relational.R | 14 duckdb-1.0.0/duckdb/tests/testthat/test-types.R | 2 931 files changed, 38815 insertions(+), 32071 deletions(-)
Title: Support Functions and Datasets for Venables and Ripley's MASS
Description: Functions and datasets to support Venables and Ripley,
"Modern Applied Statistics with S" (4th edition, 2002).
Author: Brian Ripley [aut, cre, cph],
Bill Venables [aut, cph],
Douglas M. Bates [ctb],
Kurt Hornik [trl] ,
Albrecht Gebhardt [trl] ,
David Firth [ctb]
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between MASS versions 7.3-60.0.1 dated 2024-01-13 and 7.3-61 dated 2024-06-13
MASS-7.3-60.0.1/MASS/R/confint.R |only MASS-7.3-60.0.1/MASS/R/profiles.R |only MASS-7.3-60.0.1/MASS/man/plot.profile.Rd |only MASS-7.3-60.0.1/MASS/tests/MASS-Ex.Rout |only MASS-7.3-61/MASS/ChangeLog | 23 ++- MASS-7.3-61/MASS/DESCRIPTION | 21 +- MASS-7.3-61/MASS/MD5 | 45 ++---- MASS-7.3-61/MASS/NAMESPACE | 18 +- MASS-7.3-61/MASS/R/eqscplot.R | 6 MASS-7.3-61/MASS/R/stepAIC.R | 2 MASS-7.3-61/MASS/build/partial.rdb |binary MASS-7.3-61/MASS/inst/po/en@quot/LC_MESSAGES/R-MASS.mo |binary MASS-7.3-61/MASS/man/UScereal.Rd | 2 MASS-7.3-61/MASS/man/confint.Rd | 86 ----------- MASS-7.3-61/MASS/man/eqscplot.Rd | 8 - MASS-7.3-61/MASS/man/profile.glm.Rd | 54 ------- MASS-7.3-61/MASS/po/R-MASS.pot | 13 - MASS-7.3-61/MASS/po/R-de.po | 8 - MASS-7.3-61/MASS/po/R-fr.po | 55 +++++-- MASS-7.3-61/MASS/po/R-it.po | 8 - MASS-7.3-61/MASS/po/R-ko.po | 8 - MASS-7.3-61/MASS/po/R-pl.po | 20 +- MASS-7.3-61/MASS/tests/Examples/MASS-Ex.Rout.save | 125 ----------------- MASS-7.3-61/MASS/tests/lme.R | 2 MASS-7.3-61/MASS/tests/loglm.R |only MASS-7.3-61/MASS/tests/rlm.R | 12 - 26 files changed, 161 insertions(+), 355 deletions(-)
Title: Fast Fixed-Effects Estimations
Description: Fast and user-friendly estimation of econometric models with multiple fixed-effects. Includes ordinary least squares (OLS), generalized linear models (GLM) and the negative binomial.
The core of the package is based on optimized parallel C++ code, scaling especially well for large data sets. The method to obtain the fixed-effects coefficients is based on Berge (2018) <https://github.com/lrberge/fixest/blob/master/_DOCS/FENmlm_paper.pdf>.
Further provides tools to export and view the results of several estimations with intuitive design to cluster the standard-errors.
Author: Laurent Berge [aut, cre],
Sebastian Krantz [ctb],
Grant McDermott [ctb] ,
Russell Lenth [ctb]
Maintainer: Laurent Berge <laurent.berge@u-bordeaux.fr>
Diff between fixest versions 0.12.0 dated 2024-04-17 and 0.12.1 dated 2024-06-13
DESCRIPTION | 9 ++-- MD5 | 32 +++++++-------- NEWS.md | 24 +++++++++++ R/etable.R | 14 +++++- R/fixest_env.R | 1 R/methods.R | 11 +++-- R/miscfuns.R | 28 ++++++++++--- R/onLoad.R | 76 ++++++++++++++++++++++++++++++++++++- R/panel.R | 57 +++++++++++++++++---------- R/test_fun.R | 7 +-- inst/doc/exporting_tables.html | 4 - inst/doc/fixest_walkthrough.html | 44 ++++++++++----------- inst/doc/multiple_estimations.html | 4 - inst/doc/standard_errors.html | 4 - man/l.Rd | 14 ++---- src/lm_related.cpp | 5 +- tests/fixest_tests.R | 7 ++- 17 files changed, 242 insertions(+), 99 deletions(-)
Title: Curved Text in 'ggplot2'
Description: A 'ggplot2' extension that allows text to follow curved paths.
Curved text makes it easier to directly label paths or neatly annotate in
polar co-ordinates.
Author: Allan Cameron [aut, cre],
Teun van den Brand [aut]
Maintainer: Allan Cameron <Allan.Cameron@nhs.scot>
Diff between geomtextpath versions 0.1.3 dated 2024-03-12 and 0.1.4 dated 2024-06-13
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Title: Extension Types for Spatial Data for Use with 'Arrow'
Description: Provides extension types and conversions to between R-native
object types and 'Arrow' columnar types. This includes integration among
the 'arrow', 'nanoarrow', 'sf', and 'wk' packages such that spatial
metadata is preserved wherever possible. Extension type implementations
ensure first-class geometry data type support in the 'arrow' and 'nanoarrow'
packages.
Author: Dewey Dunnington [aut, cre] ,
Anthony North [ctb],
Apache Software Foundation [cph],
Ulf Adams [cph],
Daniel Lemire [cph],
Joao Paulo Magalhaes [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between geoarrow versions 0.2.0 dated 2024-05-31 and 0.2.1 dated 2024-06-13
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ src/geoarrow.c | 2 +- 4 files changed, 11 insertions(+), 7 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-08 1.1.7
2022-10-27 1.1.6
2022-03-01 1.1.5
2022-02-01 1.1.4
2022-01-31 1.1.3
2019-07-13 1.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-06-21 1.0.7
2021-11-27 1.0.6
2021-08-13 1.0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-14 11.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-01-24 3.0.0
2022-12-13 2.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-26 0.9-2
2018-07-31 0.9-1