Title: Calculate Expertise Indices
Description: Institutional performance assessment remains a key challenge to a multitude of stakeholders. Existing indicators such as h-type indicators, g-type indicators, and many others do not reflect expertise of institutions that defines their research portfolio. The package offers functionality to compute and visualise two novel indices: the x-index and the xd-index. The x-index evaluates an institution's scholarly expertise within a specific discipline or field, while the xd-index provides a broader assessment of overall scholarly expertise considering an institution's publication pattern and strengths across coarse thematic areas. These indices offer a nuanced understanding of institutional research capabilities, aiding stakeholders in research management and resource allocation decisions. Lathabai, H.H., Nandy, A., and Singh, V.K. (2021) <doi:10.1007/s11192-021-04188-3>. Nandy, A., Lathabai, H.H., and Singh, V.K. (2023) <doi:10.5281/zenodo.8305585>.
Author: Nilabhra Rohan Das [cre, aut] ,
Abhirup Nandy [aut]
Maintainer: Nilabhra Rohan Das <nr.das@yahoo.com>
Diff between xxdi versions 1.0.0 dated 2024-05-22 and 1.1.0 dated 2024-06-21
DESCRIPTION | 16 ++++---- MD5 | 22 ++++++++--- NAMESPACE | 13 +++++++ NEWS.md | 10 +++++ R/g_index.R |only R/h_index.R |only R/x_index.R | 101 ++++++++++++++++++++++++++++++------------------------ R/xc_index.R |only R/xd_index.R | 102 ++++++++++++++++++++++++++++++------------------------- R/xdc_index.R |only man/g_index.Rd |only man/h_index.Rd |only man/x_index.Rd | 12 ++++-- man/xc_index.Rd |only man/xd_index.Rd | 12 ++++-- man/xdc_index.Rd |only 16 files changed, 176 insertions(+), 112 deletions(-)
Title: Bayesian Additive Regression Trees
Description: Bayesian Additive Regression Trees (BART) provide flexible nonparametric modeling of covariates for continuous, binary, categorical and time-to-event outcomes. For more information see Sparapani, Spanbauer and McCulloch <doi:10.18637/jss.v097.i01>.
Author: Robert McCulloch [aut],
Rodney Sparapani [aut, cre],
Robert Gramacy [ctb],
Matthew Pratola [ctb],
Charles Spanbauer [ctb],
Martyn Plummer [ctb],
Nicky Best [ctb],
Kate Cowles [ctb],
Karen Vines [ctb]
Maintainer: Rodney Sparapani <rsparapa@mcw.edu>
Diff between BART versions 2.9.7 dated 2024-04-06 and 2.9.9 dated 2024-06-21
DESCRIPTION | 10 +++--- MD5 | 58 ++++++++++++++++++++-------------------- NAMESPACE | 3 +- NEWS | 6 ++++ R/class.ind.R |only build/vignette.rds |binary cleanup | 2 - cleanup.win | 2 - data/ACTG175.rda |binary data/alligator.rda |binary data/arq.rda |binary data/bladder.rda |binary data/leukemia.rda |binary data/lung.rda |binary data/transplant.rda |binary data/xdm20.test.rda |binary data/xdm20.train.rda |binary data/ydm20.test.rda |binary data/ydm20.train.rda |binary demo/leuk.R | 9 ++---- inst/cxx-ex/clbart.cpp | 7 +++- inst/cxx-ex/cpbart.cpp | 7 +++- inst/cxx-ex/cwbart.cpp | 7 +++- inst/doc/the-BART-R-package.pdf |binary man/alligator.Rd | 3 +- man/class.ind.Rd |only src/cabart.cpp | 7 +++- src/cgbart.cpp | 7 +++- src/clbart.cpp | 7 +++- src/cpbart.cpp | 7 +++- src/cwbart.cpp | 7 +++- 31 files changed, 90 insertions(+), 59 deletions(-)
Title: Integrative Pathway Enrichment Analysis of Multivariate Omics
Data
Description: Framework for analysing multiple omics datasets in the context of molecular pathways, biological processes and other types of gene sets. The package uses p-value merging to combine gene- or protein-level signals, followed by ranked hypergeometric tests to determine enriched pathways and processes. This approach allows researchers to interpret a series of omics datasets in the context of known biology and gene function, and discover associations that are only apparent when several datasets are combined. The first version of the package is part of the following publication: Integrative Pathway Enrichment Analysis of Multivariate Omics Data. Paczkowska M^, Barenboim J^, Sintupisut N, Fox NS, Zhu H, Abd-Rabbo D, Mee MW, Boutros PC, PCAWG Drivers and Functional Interpretation Working Group; Reimand J, PCAWG Consortium. Nature Communications (2020) <doi:10.1038/s41467-019-13983-9>.
Author: Juri Reimand [aut, cre],
Jonathan Barenboim [ctb],
Mykhaylo Slobodyanyuk [aut]
Maintainer: Juri Reimand <juri.reimand@utoronto.ca>
Diff between ActivePathways versions 2.0.3 dated 2023-10-31 and 2.0.4 dated 2024-06-21
DESCRIPTION | 8 +-- MD5 | 14 ++--- NEWS.md | 3 + R/ActivePathways.r | 2 R/merge_p.r | 2 inst/doc/ActivePathways-vignette.html | 87 +++++++++++++++++----------------- tests/testthat/test_merge_p_values.r | 7 ++ tests/testthat/test_validation.r | 7 ++ 8 files changed, 76 insertions(+), 54 deletions(-)
More information about ActivePathways at CRAN
Permanent link
Title: Reconstruction of Transmission Chains from Surveillance Data
Description: Bayesian reconstruction of who infected whom during past outbreaks using routinely-collected surveillance data. Inference of transmission trees using genotype, age specific social contacts, distance between cases and onset dates of the reported cases. (Robert A, Kucharski AJ, Gastanaduy PA, Paul P, Funk S. (2020) <doi:10.1098/rsif.2020.0084>).
Author: Alexis Robert [aut, cre, cph] ,
Sebastian Funk [aut] ,
Adam J Kucharski [aut] ,
Thibaut Jombart [ctb]
Maintainer: Alexis Robert <alexis.robert@lshtm.ac.uk>
Diff between o2geosocial versions 1.1.2 dated 2024-03-26 and 1.1.3 dated 2024-06-21
DESCRIPTION | 6 +- MD5 | 12 ++--- NEWS.md | 3 + R/outbreaker.R | 2 build/vignette.rds |binary inst/doc/o2geosocial.html | 24 +++++----- src/moves.cpp | 106 +++++++++++++++++++++++++--------------------- 7 files changed, 83 insertions(+), 70 deletions(-)
Title: Helpers for Developing Command Line Interfaces
Description: A suite of tools to build attractive command line interfaces
('CLIs'), from semantic elements: headings, lists, alerts, paragraphs,
etc. Supports custom themes via a 'CSS'-like language. It also
contains a number of lower level 'CLI' elements: rules, boxes, trees,
and 'Unicode' symbols with 'ASCII' alternatives. It support ANSI
colors and text styles as well.
Author: Gabor Csardi [aut, cre],
Hadley Wickham [ctb],
Kirill Mueller [ctb],
Salim Brueggemann [ctb] ,
Posit Software, PBC [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between cli versions 3.6.2 dated 2023-12-11 and 3.6.3 dated 2024-06-21
DESCRIPTION | 6 ++-- MD5 | 43 ++++++++++++++++---------------- NEWS.md | 13 +++++++++ R/cliapp-docs.R | 3 +- R/friendly-type.R | 2 - R/pluralize.R | 13 +++++++++ R/prettycode.R | 23 +++++------------ R/spark.R | 4 +- src/Makevars | 1 src/diff.c | 8 ++--- src/progress.c | 6 +++- tests/testthat/_snaps/rlang-1.1.4 |only tests/testthat/test-collapsing.R | 2 - tests/testthat/test-diff.R | 2 - tests/testthat/test-format-conditions.R | 4 +- tests/testthat/test-inline-2.R | 12 ++++---- tests/testthat/test-inline.R | 2 - tests/testthat/test-keypress.R | 4 ++ tests/testthat/test-links.R | 30 +++++++++++----------- tests/testthat/test-progress-types.R | 1 tests/testthat/test-rlang-errors.R | 4 +- tests/testthat/test-themes.R | 6 ++-- tests/testthat/test-vt.R | 2 - 23 files changed, 111 insertions(+), 80 deletions(-)
Title: Nanosecond-Resolution Time Support for R
Description: Full 64-bit resolution date and time functionality with
nanosecond granularity is provided, with easy transition to and from
the standard 'POSIXct' type. Three additional classes offer interval,
period and duration functionality for nanosecond-resolution timestamps.
Author: Dirk Eddelbuettel and Leonardo Silvestri
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between nanotime versions 0.3.8 dated 2024-06-19 and 0.3.9 dated 2024-06-21
ChangeLog | 12 ++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ README.md | 2 +- inst/NEWS.Rd | 7 +++++++ inst/doc/nanotime-introduction.pdf |binary inst/tinytest/test_nanotime.R | 5 +++-- 7 files changed, 33 insertions(+), 13 deletions(-)
Title: A Computational Biologist’s Toolkit To Get Data From 'avidaDB'
Description: Easy-to-use tools for performing complex queries on 'avidaDB', a
semantic database that stores genomic and transcriptomic data of
self-replicating computer programs (known as digital organisms) that mutate
and evolve within a user-defined computational environment.
Author: Miguel A. Fortuna [aut] ,
Raul Ortega [cre]
Maintainer: Raul Ortega <raul.ortega@ebd.csic.es>
Diff between avidaR versions 1.2.0 dated 2023-09-14 and 1.2.1 dated 2024-06-21
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 8 ++++++++ README.md | 19 +++++++++++++------ man/convert_org_into_seq.Rd | 4 ++-- 5 files changed, 32 insertions(+), 17 deletions(-)
Title: Group Iterative Multiple Model Estimation
Description: Data-driven approach for arriving at person-specific time series models. The method first identifies which relations replicate across the majority of individuals to detect signal from noise. These group-level relations are then used as a foundation for starting the search for person-specific (or individual-level) relations. See Gates & Molenaar (2012) <doi:10.1016/j.neuroimage.2012.06.026>.
Author: Stephanie Lane [aut, trl],
Kathleen Gates [aut, cre, ccp],
Zachary Fisher [aut],
Cara Arizmendi [aut],
Peter Molenaar [aut, ccp],
Edgar Merkle [ctb],
Michael Hallquist [ctb],
Hallie Pike [ctb],
Teague Henry [ctb],
Kelly Duffy [ctb],
Lan Luo [ctb],
Ad [...truncated...]
Maintainer: Kathleen M Gates <gateskm@email.unc.edu>
Diff between gimme versions 0.7-17 dated 2024-05-21 and 0.7-18 dated 2024-06-21
gimme-0.7-17/gimme/man/convolve.Rd |only gimme-0.7-18/gimme/DESCRIPTION | 8 - gimme-0.7-18/gimme/MD5 | 24 ++-- gimme-0.7-18/gimme/NAMESPACE | 2 gimme-0.7-18/gimme/R/determine.subgroups.R | 6 - gimme-0.7-18/gimme/R/get.params.R | 141 +++++++++++------------- gimme-0.7-18/gimme/R/gimme-pkg.R | 2 gimme-0.7-18/gimme/R/indSEM.R | 4 gimme-0.7-18/gimme/R/sFIR.R | 1 gimme-0.7-18/gimme/R/setupConvolve.R | 8 - gimme-0.7-18/gimme/R/setupTransformData.R | 2 gimme-0.7-18/gimme/inst/doc/gimme_vignette.html | 6 - gimme-0.7-18/gimme/man/setupConvolve.Rd |only gimme-0.7-18/gimme/tests/testthat/test-gimme.R | 118 ++++++++++---------- 14 files changed, 163 insertions(+), 159 deletions(-)
Title: Projection Pursuit
Description: Projection pursuit (PP) with 17 methods and grand tour with 3 methods. Being that projection pursuit searches for low-dimensional linear projections in high-dimensional data structures, while grand tour is a technique used to explore multivariate statistical data through animation.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between Pursuit versions 1.0.4 dated 2023-08-19 and 1.0.5 dated 2024-06-21
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- NAMESPACE | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Multiple Factor Analysis (MFA)
Description: Performs Multiple Factor Analysis method for quantitative, categorical, frequency and mixed data, in addition to generating a lot of graphics, also has other useful functions.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MFAg versions 1.9 dated 2023-08-19 and 2.0 dated 2024-06-21
DESCRIPTION | 27 +++++++++++++++++------- MD5 | 14 ++++++------ R/LocLab_English.R | 8 +++---- R/Plot.MFA_English.R | 6 ++--- man/GSVD_English.Rd | 2 - man/IM_English.Rd | 2 - man/MFA_English.Rd | 36 ++++++++++++++++---------------- man/MFAg-package.Rd | 56 ++++++++++++++++++++------------------------------- 8 files changed, 75 insertions(+), 76 deletions(-)
Title: Joint Analysis of Experiments with Mixtures and Random Effects
Description: Performs a joint analysis of experiments with mixtures and random effects, taking on a process variable represented by a covariable.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between Blendstat versions 1.0.4 dated 2023-08-19 and 1.0.5 dated 2024-06-21
DESCRIPTION | 29 ++++++++++++++++++++--------- MD5 | 6 +++--- man/Blend.Rd | 2 +- man/Blendstat-package.Rd | 6 +++--- 4 files changed, 27 insertions(+), 16 deletions(-)
Title: Analise multivariada (brazilian portuguese)
Description: Analise multivariada, tendo funcoes que executam analise de correspondencia simples (CA) e multipla (MCA), analise de componentes principais (PCA), analise de correlacao canonica (CCA), analise fatorial (FA), escalonamento multidimensional (MDS), analise discriminante linear (LDA) e quadratica (QDA), analise de cluster hierarquico e nao hierarquico, regressao linear simples e multipla, analise de multiplos fatores (MFA) para dados quantitativos, qualitativos, de frequencia (MFACT) e dados mistos, biplot, scatter plot, projection pursuit (PP), grant tour e outras funcoes uteis para a analise multivariada.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar.pt versions 2.2.1 dated 2023-08-19 and 2.2.2 dated 2024-06-21
DESCRIPTION | 31 +++++++++----- MD5 | 78 ++++++++++++++++++------------------ R/Biplot.R | 6 +- R/Cluster.R | 6 +- R/FA.R | 18 ++++---- R/GrandTour.R | 18 ++++---- R/LocLab.R | 8 +-- R/MDS.R | 6 +- R/NormTest.R | 12 ++--- R/PCA.R | 2 R/Plot.CA.R | 6 +- R/Plot.CCA.R | 6 +- R/Plot.Cor.R | 6 +- R/Plot.FA.R | 6 +- R/Plot.MFA.R | 6 +- R/Plot.PCA.R | 6 +- R/Plot.PP.R | 6 +- R/Plot.Regr.R | 6 +- R/Scatter.R | 6 +- man/Biplot.Rd | 2 man/CA.Rd | 4 - man/CCA.Rd | 8 +-- man/Cluster.Rd | 6 +- man/CoefVar.Rd | 2 man/DA.Rd | 10 ++-- man/Data_Cafes.Rd | 4 - man/Data_Individuos.Rd | 5 +- man/FA.Rd | 6 +- man/GSVD.Rd | 2 man/GrandTour.Rd | 16 +++---- man/IM.Rd | 2 man/MDS.Rd | 4 - man/MFA.Rd | 36 ++++++++-------- man/MVar.pt-package.Rd | 104 ++++++++++++++++++++++++------------------------- man/NormTest.Rd | 6 +- man/PCA.Rd | 8 +-- man/PP_Index.Rd | 32 +++++++-------- man/PP_Optimizer.Rd | 4 - man/Regr.Rd | 6 +- man/Scatter.Rd | 4 - 40 files changed, 261 insertions(+), 249 deletions(-)
Title: Multivariate Analysis
Description: Multivariate analysis, having functions that perform simple correspondence analysis (CA) and multiple correspondence analysis (MCA), principal components analysis (PCA), canonical correlation analysis (CCA), factorial analysis (FA), multidimensional scaling (MDS), linear (LDA) and quadratic discriminant analysis (QDA), hierarchical and non-hierarchical cluster analysis, simple and multiple linear regression, multiple factor analysis (MFA) for quantitative, qualitative, frequency (MFACT) and mixed data, biplot, scatter plot, projection pursuit (PP), grant tour method and other useful functions for the multivariate analysis.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar versions 2.2.1 dated 2023-08-19 and 2.2.2 dated 2024-06-21
DESCRIPTION | 31 ++++++++----- MD5 | 74 +++++++++++++++---------------- R/Biplot_English.R | 6 +- R/Cluster_English.R | 6 +- R/FA_English.R | 18 +++---- R/GrandTour_English.R | 18 +++---- R/LocLab_English.R | 8 +-- R/MDS_English.R | 6 +- R/NormTest_English.R | 12 ++--- R/PCA_English.R | 2 R/Plot.Cor_English.R | 6 +- R/Plot.FA_English.R | 6 +- R/Plot.MFA_English.R | 6 +- R/Plot.PCA_English.R | 6 +- R/Plot.PP_English.R | 6 +- R/Plot.Regr_English.R | 6 +- R/Scatter_English.R | 6 +- man/Biplot_English.Rd | 2 man/CA_English.Rd | 4 - man/CCA_English.Rd | 8 +-- man/Cluster_English.Rd | 6 +- man/CoefVar_English.Rd | 2 man/DA_English.Rd | 10 ++-- man/DataCoffee_English.Rd | 4 - man/DataInd_English.Rd | 4 - man/FA_English.Rd | 6 +- man/GSVD_English.Rd | 2 man/GrandTour_English.Rd | 16 +++--- man/IM_English.Rd | 2 man/MDS_English.Rd | 4 - man/MFA_English.Rd | 36 +++++++-------- man/MVar-package.Rd | 104 ++++++++++++++++++++++---------------------- man/NormTest_English.Rd | 6 +- man/PCA_English.Rd | 8 +-- man/PP_Index_English.Rd | 32 ++++++------- man/PP_Optimizer_English.Rd | 4 - man/Regr_English.Rd | 6 +- man/Scatter_English.Rd | 4 - 38 files changed, 252 insertions(+), 241 deletions(-)
Title: Combining Tree-Boosting with Gaussian Process and Mixed Effects
Models
Description: An R package that allows for combining tree-boosting with Gaussian process and mixed effects models. It also allows for independently doing tree-boosting as well as inference and prediction for Gaussian process and mixed effects models. See <https://github.com/fabsig/GPBoost> for more information on the software and Sigrist (2022, JMLR) <https://www.jmlr.org/papers/v23/20-322.html> and Sigrist (2023, TPAMI) <doi:10.1109/TPAMI.2022.3168152> for more information on the methodology.
Author: Fabio Sigrist [aut, cre],
Tim Gyger [aut],
Pascal Kuendig [aut],
Benoit Jacob [cph],
Gael Guennebaud [cph],
Nicolas Carre [cph],
Pierre Zoppitelli [cph],
Gauthier Brun [cph],
Jean Ceccato [cph],
Jitse Niesen [cph],
Other authors of Eigen for the incl [...truncated...]
Maintainer: Fabio Sigrist <fabiosigrist@gmail.com>
Diff between gpboost versions 1.5.0 dated 2024-05-28 and 1.5.1 dated 2024-06-21
DESCRIPTION | 8 MD5 | 32 ++- NAMESPACE | 6 R/GPModel.R | 161 +++++++++++++++++++ configure.ac | 2 man/get_aux_pars.GPModel.Rd |only man/get_aux_pars.Rd |only man/get_coef.GPModel.Rd |only man/get_coef.Rd |only man/get_cov_pars.GPModel.Rd |only man/get_cov_pars.Rd |only src/include/GPBoost/likelihoods.h | 2 src/include/GPBoost/optim_utils.h | 8 src/include/GPBoost/re_model_template.h | 90 +++++++++- src/include/GPBoost/utils.h | 6 src/include/LBFGS.h | 43 ++++- src/include/LBFGSpp/BFGSMat.h | 12 + src/include/LightGBM/config.h | 2 tests/testthat/test_GPModel_grouped_random_effects.R | 9 - tests/testthat/test_GPModel_non_Gaussian_data.R | 34 ++-- 20 files changed, 358 insertions(+), 57 deletions(-)
Title: Accesses Brazilian Public Security Data from SINESP Since 2015
Description: Allows access to data from the Brazilian Public Security Information System (SINESP) by state and municipality. <https://www.gov.br/mj/pt-br/assuntos/sua-seguranca/seguranca-publica/sinesp-1>.
Author: Giovanni Vargette [aut] ,
Igor Laltuf [aut, cre] ,
Marcelo Justus [aut]
Maintainer: Igor Laltuf <igorlaltuf@gmail.com>
Diff between BrazilCrime versions 0.1 dated 2024-06-20 and 0.2 dated 2024-06-21
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/get_sinesp_data.R | 4 ++-- R/get_sinesp_vde_data.R | 33 ++++++++++++--------------------- README.md | 7 +++++-- 5 files changed, 26 insertions(+), 32 deletions(-)
Title: A Framework for Data-Driven Stochastic Disease Spread
Simulations
Description: Provides an efficient and very flexible framework to
conduct data-driven epidemiological modeling in realistic large
scale disease spread simulations. The framework integrates
infection dynamics in subpopulations as continuous-time Markov
chains using the Gillespie stochastic simulation algorithm and
incorporates available data such as births, deaths and movements
as scheduled events at predefined time-points. Using C code for
the numerical solvers and 'OpenMP' (if available) to divide work
over multiple processors ensures high performance when simulating
a sample outcome. One of our design goals was to make the package
extendable and enable usage of the numerical solvers from other R
extension packages in order to facilitate complex epidemiological
research. The package contains template models and can be extended
with user-defined models. For more details see the paper by
Widgren, Bauer, Eriksson and Engblom (2019)
<doi:10.18637/jss.v091.i12>. The package also provides
function [...truncated...]
Author: Stefan Widgren [aut, cre] ,
Robin Eriksson [aut] ,
Stefan Engblom [aut] ,
Pavol Bauer [aut] ,
Thomas Rosendal [ctb] ,
Ivana Rodriguez Ewerloef [ctb] ,
Attractive Chaos [cph]
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>
Diff between SimInf versions 9.7.0 dated 2024-04-23 and 9.8.1 dated 2024-06-21
DESCRIPTION | 6 +++--- MD5 | 34 +++++++++++++++++----------------- NEWS.md | 12 ++++++++++++ R/SimInf_events.R | 6 +++--- R/SimInf_model.R | 2 +- R/classes.R | 12 +++++++----- R/distance.R | 2 +- R/mparse.R | 3 ++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/SimInf.pdf |binary man/SimInf_events-class.Rd | 2 +- man/SimInf_events.Rd | 2 +- man/SimInf_model-class.Rd | 24 +++++++++++++++--------- man/SimInf_model.Rd | 5 +++-- man/distance_matrix.Rd | 2 +- man/select_matrix.Rd | 2 +- tests/mparse.R | 11 +++++++++++ 18 files changed, 79 insertions(+), 46 deletions(-)
Title: An Interface for Image Recognition
Description: Provides an interface for image recognition using the 'Google Vision API' <https://cloud.google.com/vision/> . Converts API data for features such as object detection and optical character recognition to data frames. The package also includes functions for analyzing image annotations.
Author: Carsten Schwemmer [aut, cre]
Maintainer: Carsten Schwemmer <c.schwem2er@gmail.com>
Diff between imgrec versions 0.1.3 dated 2021-12-09 and 0.1.4 dated 2024-06-21
imgrec-0.1.3/imgrec/inst/doc/label_tweets.R |only imgrec-0.1.3/imgrec/inst/doc/label_tweets.Rmd |only imgrec-0.1.3/imgrec/inst/doc/label_tweets.html |only imgrec-0.1.3/imgrec/vignettes/file3e803f643761.html |only imgrec-0.1.3/imgrec/vignettes/file3e805d387f.html |only imgrec-0.1.3/imgrec/vignettes/label_tweets.Rmd |only imgrec-0.1.4/imgrec/DESCRIPTION | 18 imgrec-0.1.4/imgrec/MD5 | 33 - imgrec-0.1.4/imgrec/NAMESPACE | 2 imgrec-0.1.4/imgrec/NEWS.md | 5 imgrec-0.1.4/imgrec/R/parse_annotations.R | 2 imgrec-0.1.4/imgrec/R/save_json.R | 2 imgrec-0.1.4/imgrec/R/zzz.R | 3 imgrec-0.1.4/imgrec/README.md | 34 - imgrec-0.1.4/imgrec/build/vignette.rds |binary imgrec-0.1.4/imgrec/inst/doc/intro.R | 2 imgrec-0.1.4/imgrec/inst/doc/intro.Rmd | 6 imgrec-0.1.4/imgrec/inst/doc/intro.html | 489 +++++++++++++++----- imgrec-0.1.4/imgrec/vignettes/file25844b264156.html |only imgrec-0.1.4/imgrec/vignettes/file72844b3c65bc.html |only imgrec-0.1.4/imgrec/vignettes/file7a747d0152e3.html |only imgrec-0.1.4/imgrec/vignettes/intro.Rmd | 6 22 files changed, 426 insertions(+), 176 deletions(-)
Title: Import, Recompute and Analyze Data from Portable Gas Analyzers
Description: The gasanalyzer R package offers methods for importing, preprocessing,
and analyzing data related to photosynthetic characteristics (gas exchange,
chlorophyll fluorescence and isotope ratios). It translates variable names
into a standard format, and can recalculate derived, physiological
quantities using imported or predefined equations. The package also allows
users to assess the sensitivity of their results to different assumptions
used in the calculations.
See also Tholen (2024) <doi:10.1093/aobpla/plae035>.
Author: Danny Tholen [aut, cre]
Maintainer: Danny Tholen <thalecress+p@gmail.com>
Diff between gasanalyzer versions 0.4.0 dated 2024-04-11 and 0.4.1 dated 2024-06-21
DESCRIPTION | 38 +- MD5 | 78 ++-- NAMESPACE | 1 NEWS.md | 10 R/calc_data.R | 334 +++++++++++---------- R/equations.R | 18 - R/factory.R | 2 R/internal_data.R | 6 R/raw.R | 8 R/read_6400.R | 64 ++-- R/read_6800.R | 48 +-- R/read_ciras4.R | 2 R/read_gfs.R | 8 R/readwrite_gasanalyzer.R | 6 R/sysdata.rda |binary R/utils.R | 2 README.md | 66 ++-- build/vignette.rds |binary inst/CITATION |only inst/WORDLIST | 4 inst/doc/gasanalyzer.R | 45 +- inst/doc/gasanalyzer.Rmd | 61 +-- inst/doc/gasanalyzer.html | 705 ++++++++++++++++++++++----------------------- inst/extdata/vars.tsv | 593 +++++++++++++++++++------------------ man/create_equations.Rd | 2 man/export_ess_dive.Rd | 2 man/get_factory_cals.Rd | 2 man/modify_equations.Rd | 2 man/permutate.Rd | 2 man/read_6400_txt.Rd | 2 man/read_6800_equations.Rd | 2 man/read_6800_txt.Rd | 4 man/read_6800_xlsx.Rd | 6 man/read_ciras4.Rd | 2 man/read_gasexchange.Rd | 2 man/read_gfs.Rd | 2 man/recalculate.Rd | 2 man/write_gasexchange.Rd | 2 tests/testthat |only tests/testthat.R |only vignettes/gasanalyzer.Rmd | 61 +-- 41 files changed, 1130 insertions(+), 1064 deletions(-)
Title: Vectorised Computation of P-Values and Their Supports for
Several Discrete Statistical Tests
Description: Provides vectorised functions for computing p-values of various
common discrete statistical tests, as described e.g. in Agresti (2002)
<doi:10.1002/0471249688>, including their distributions. Exact and
approximate computation methods are provided. For exact p-values, several
procedures of determining two-sided p-values are included, which are
outlined in more detail in Hirji (2006) <doi:10.1201/9781420036190>.
Author: Florian Junge [cre, aut],
Christina Kihn [aut],
Sebastian Doehler [ctb]
Maintainer: Florian Junge <diso.fbmn@h-da.de>
Diff between DiscreteTests versions 0.1.2 dated 2024-05-11 and 0.1.3 dated 2024-06-21
DESCRIPTION | 8 MD5 | 10 NEWS.md | 12 - R/fisher.R | 614 +++++++++++++++++++++++++----------------------------- R/mcnemar.R | 420 ++++++++++++++++-------------------- build/partial.rdb |binary 6 files changed, 502 insertions(+), 562 deletions(-)
Title: Designing Stated Preference Experiments
Description: Contemporary software commonly used to design stated preference experiments are expensive and the code is closed source. This is a free software package with an easy to use interface to make flexible stated preference experimental designs using state-of-the-art methods. For an overview of stated choice experimental design theory, see e.g., Rose, J. M. & Bliemer, M. C. J. (2014) in Hess S. & Daly. A. <doi:10.4337/9781781003152>. The package website can be accessed at <https://spdesign.edsandorf.me>. We acknowledge funding from the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant INSPiRE (Grant agreement ID: 793163).
Author: Erlend Dancke Sandorf [aut, cre],
Danny Campbell [aut]
Maintainer: Erlend Dancke Sandorf <erlend.dancke.sandorf@nmbu.no>
Diff between spdesign versions 0.0.3 dated 2024-01-16 and 0.0.4 dated 2024-06-21
DESCRIPTION | 8 ++++---- MD5 | 35 +++++++++++++++++++---------------- NAMESPACE | 1 + NEWS.md | 5 +++++ R/design.R | 14 ++++++++++---- R/efficiency-criteria.R | 4 ++-- R/evaluate.R | 8 +++++++- R/extract.R | 2 +- R/level-balance.R |only R/parsing.R | 2 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/examples.html | 2 +- inst/doc/syntax.Rmd | 1 + inst/doc/syntax.html | 5 +++++ man/calculate_efficiency_criteria.Rd | 4 ++-- man/extract_all_names.Rd | 2 +- man/level_balance.Rd |only tests/testthat/test-parsing-extras.R |only vignettes/syntax.Rmd | 1 + 20 files changed, 61 insertions(+), 33 deletions(-)
More information about informativeSCI at CRAN
Permanent link
Title: Occurrence Data Cleaning
Description: Flags and checks occurrence data that are in Darwin Core
format. The package includes generic functions and data as well as
some that are specific to bees. This package is meant to build upon
and be complimentary to other excellent occurrence cleaning packages,
including 'bdc' and 'CoordinateCleaner'. This package uses datasets
from several sources and particularly from the Discover Life Website,
created by Ascher and Pickering (2020). For further information,
please see the original publication and package website. Publication
- Dorey et al. (2023) <doi:10.1101/2023.06.30.547152> and package
website - Dorey et al. (2023) <https://github.com/jbdorey/BeeBDC>.
Author: James B. Dorey [aut, cre, cph]
,
Robert L. O'Reilly [aut] ,
Silas Bossert [aut] ,
Erica E. Fischer [aut]
Maintainer: James B. Dorey <jbdorey@me.com>
Diff between BeeBDC versions 1.1.1 dated 2024-04-03 and 1.2.0 dated 2024-06-21
DESCRIPTION | 8 MD5 | 95 + NAMESPACE | 1 NEWS.md | 6 R/beesChecklist.R | 10 R/beesTaxonomy.R | 5 R/continentOutliers.R |only R/countryOutliers.R | 25 R/interactiveMapR.R | 2 R/jbd_CfC_chunker.R | 6 R/jbd_Ctrans_chunker.R | 3 R/jbd_coordCountryInconsistent.R | 49 R/jbd_coordinates_transposed.R | 2 R/plotFlagSummary.R | 3 R/summaryFun.R | 18 R/summaryMaps.R | 3 R/testChecklist.R |only R/testTaxonomy.R |only README.md | 8 build/vignette.rds |binary data/testChecklist.rda |only data/testTaxonomy.rda |only inst/BeeBDC_fullWorkflow.R | 15 inst/CITATION | 6 inst/doc/BeeBDC_main.R | 15 inst/doc/BeeBDC_main.Rmd | 20 inst/doc/BeeBDC_main.html | 1599 +++++++++++++++---------------- inst/extdata/testChecklist.rda |binary inst/extdata/testTaxonomy.rda |binary man/beesChecklist.Rd | 17 man/beesTaxonomy.Rd | 5 man/continentOutlieRs.Rd |only man/countryOutlieRs.Rd | 9 man/interactiveMapR.Rd | 2 man/jbd_CfC_chunker.Rd | 2 man/jbd_Ctrans_chunker.Rd | 2 man/jbd_coordCountryInconsistent.Rd | 3 man/jbd_coordinates_transposed.Rd | 2 man/summaryFun.Rd | 6 man/summaryMaps.Rd | 3 man/testChecklist.Rd |only man/testTaxonomy.Rd |only tests/testthat/test-HarmoniseR.R | 8 tests/testthat/test-beesChecklist.R | 8 tests/testthat/test-continentOutlieRs.R |only tests/testthat/test-countryOutlieRs.R | 11 tests/testthat/test-formattedCombiner.R | 6 tests/testthat/test-interactiveMapR.R | 6 tests/testthat/test-jbd_CfC_chunker.R | 5 tests/testthat/test-jbd_Ctrans_chunker.R | 5 tests/testthat/test-summaryMaps.R | 7 tests/testthat/test-taxadbToBeeBDC.R | 7 vignettes/BeeBDC_main.Rmd | 20 53 files changed, 1133 insertions(+), 900 deletions(-)
Title: Weighted-Average Least Squares Model Averaging
Description: Implements Weighted-Average Least Squares model averaging
for negative binomial regression models of Huynh (2024) <doi:10.48550/arXiv.2404.11324>,
generalized linear models of De Luca, Magnus, Peracchi (2018)
<doi:10.1016/j.jeconom.2017.12.007> and linear regression models of
Magnus, Powell, Pruefer (2010) <doi:10.1016/j.jeconom.2009.07.004>, see also
Magnus, De Luca (2016) <doi:10.1111/joes.12094>. Weighted-Average Least Squares
for the linear regression model is based on the original 'MATLAB' code by
Magnus and De Luca <https://www.janmagnus.nl/items/WALS.pdf>, see also
Kumar, Magnus (2013) <doi:10.1007/s13571-013-0060-9> and
De Luca, Magnus (2011) <doi:10.1177/1536867X1201100402>.
Author: Kevin Huynh [aut, cre]
Maintainer: Kevin Huynh <Kevin.Huynh@unibas.ch>
Diff between WALS versions 0.2.4 dated 2023-11-03 and 0.2.5 dated 2024-06-21
DESCRIPTION | 12 MD5 | 108 +- NAMESPACE | 119 +- NEWS.md | 45 - R/WALS-package.R | 10 R/computePosterior.R | 226 ++--- R/data.R | 272 +++--- R/familyPrior.R | 452 +++++----- R/familyWALS.R | 824 +++++++++--------- R/fitNB2.R | 292 +++--- R/predictCounts.R | 125 +- R/tools.R | 1276 ++++++++++++++-------------- R/wals.R | 1669 ++++++++++++++++++------------------- R/walsGLM.R | 1697 +++++++++++++++++++------------------- R/walsNB.R | 1851 ++++++++++++++++++++---------------------- build/partial.rdb |binary inst/CITATION | 33 inst/REFERENCES.bib | 371 ++++---- man/GrowthMP.Rd | 194 ++-- man/GrowthMPP.Rd | 122 +- man/checkSingularitySVD.Rd | 44 man/computeGamma1.Rd | 186 ++-- man/computeGamma1r.Rd | 138 +-- man/computeGammaUnSVD.Rd | 144 +-- man/computePosterior.Rd | 110 +- man/computeX2M1X2.Rd | 136 +-- man/controlGLM.Rd | 72 - man/controlNB.Rd | 126 +- man/ddweibull.Rd | 72 - man/dlaplace.Rd | 66 - man/dsubbotin.Rd | 74 - man/familyPrior.Rd | 206 ++-- man/familyWALS.Rd | 276 +++--- man/fitNB2.Rd | 112 +- man/gammaToBeta.Rd | 134 +-- man/negativeBinomial.Rd | 50 - man/predict.wals.Rd | 372 ++++---- man/predict.walsGLM.Rd | 464 +++++----- man/predictCounts.Rd | 102 +- man/semiorthogonalize.Rd | 160 +-- man/snbinom.Rd | 68 - man/svdLSplus.Rd | 114 +- man/vcov.walsNB.Rd | 42 man/wals.Rd | 429 ++++----- man/walsFit.Rd | 274 +++--- man/walsGLM.Rd | 401 ++++----- man/walsGLMfit.Rd | 198 ++-- man/walsGLMfitIterate.Rd | 244 ++--- man/walsNB.Rd | 417 ++++----- man/walsNBfit.Rd | 422 ++++----- man/walsNBfitIterate.Rd | 260 ++--- tests/testthat.R | 8 tests/testthat/test-wals.R | 445 +++++----- tests/testthat/test-walsGLM.R | 331 +++---- tests/testthat/test-walsNB.R | 498 +++++------ 55 files changed, 8481 insertions(+), 8412 deletions(-)
Title: QTL Mapping and Hotspots Detection
Description: For QTL mapping, this package comprises several functions designed to execute diverse
tasks, such as simulating or analyzing data, calculating significance thresholds, and
visualizing QTL mapping results. The single-QTL or multiple-QTL method, which enables
the fitting and comparison of various statistical models, is employed to analyze the
data for estimating QTL parameters. The models encompass linear regression, permutation
tests, normal mixture models, and truncated normal mixture models. The Gaussian stochastic
process is utilized to compute significance thresholds for QTL detection on a genetic
linkage map within experimental populations. Two types of data, complete genotyping, and
selective genotyping data from various experimental populations, including backcross, F2,
recombinant inbred (RI) populations, and advanced intercrossed (AI) populations, are
considered in the QTL mapping analysis. For QTL hotspot detection, statistical methods can
be developed based on either utilizin [...truncated...]
Author: Ping-Yuan Chung [cre],
Chen-Hung Kao [aut],
Y.-T. Guo [aut],
H.-N. Ho [aut],
H.-I. Lee [aut],
P.-Y. Wu [aut],
M.-H. Yang [aut],
M.-H. Zeng [aut]
Maintainer: Ping-Yuan Chung <pychung@webmail.stat.sinica.edu.tw>
Diff between QTLEMM versions 1.5.4 dated 2024-05-17 and 2.0.0 dated 2024-06-21
DESCRIPTION | 6 ++--- MD5 | 39 +++++++++++++++++++----------------- NAMESPACE | 1 R/EM.MIM.R | 12 +++-------- R/EM.MIM2.R | 24 +++++++--------------- R/EQF.permu.R | 39 ++++++++++++------------------------ R/EQF.plot.R | 1 R/IM.search.R | 5 ++-- R/IM.search2.R | 5 ++-- R/LOD.QTLdetect.R | 38 +++++++++++++++++------------------ R/LRTthre.R | 41 +++++++++++++++----------------------- R/MIM.points.R | 4 +-- R/MIM.points2.R | 4 +-- R/MIM.search.R | 6 ++--- R/MIM.search2.R | 6 ++--- R/Qhot.EQF.R |only R/Qhot.R | 1 inst/extdata/QHOTEQFexample.RDATA |only man/EQF.permu.Rd | 4 +-- man/EQF.plot.Rd | 1 man/LOD.QTLdetect.Rd | 4 +-- man/Qhot.EQF.Rd |only 22 files changed, 109 insertions(+), 132 deletions(-)
Title: Search Spaces for 'mlr3'
Description: Collection of search spaces for hyperparameter optimization in the
'mlr3' ecosystem. It features ready-to-use search spaces for many popular
machine learning algorithms. The search spaces are from scientific articles
and work for a wide range of data sets.
Author: Marc Becker [cre, aut] ,
Michel Lang [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3tuningspaces versions 0.5.0 dated 2024-03-05 and 0.5.1 dated 2024-06-21
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/TuningSpace.R | 12 ++++++------ man/TuningSpace.Rd | 6 +++--- tests/testthat/test_as_search_space.R | 6 +++--- 6 files changed, 24 insertions(+), 20 deletions(-)
More information about mlr3tuningspaces at CRAN
Permanent link
Title: Groupwise Statistics, LSmeans, Linear Estimates, Utilities
Description: Utility package containing:
1) Facilities for working with grouped data: 'do' something to data
stratified 'by' some variables.
2) LSmeans (least-squares means), general linear estimates.
3) Restrict functions to a smaller domain.
4) Miscellaneous other utilities.
Author: Soeren Hoejsgaard <sorenh@math.aau.dk> and Ulrich Halekoh
<uhalekoh@health.sdu.dk>
Maintainer: Soeren Hoejsgaard <sorenh@math.aau.dk>
Diff between doBy versions 4.6.21 dated 2024-04-29 and 4.6.22 dated 2024-06-21
doBy-4.6.21/doBy/R/DATA_cad.R |only doBy-4.6.21/doBy/R/DATA_personality.R |only doBy-4.6.21/doBy/R/data_budworm.R |only doBy-4.6.21/doBy/R/descStat.R |only doBy-4.6.21/doBy/R/interaction_plot.R |only doBy-4.6.21/doBy/R/plot_lm.r |only doBy-4.6.21/doBy/R/recodeVar.R |only doBy-4.6.21/doBy/R/renameCol.R |only doBy-4.6.21/doBy/R/taylor.R |only doBy-4.6.21/doBy/R/truncate0.r |only doBy-4.6.21/doBy/R/which_maxn.R |only doBy-4.6.21/doBy/inst/doc/doby.pdf |only doBy-4.6.21/doBy/inst/doc/doby.rnw |only doBy-4.6.21/doBy/man/breastcancer.Rd |only doBy-4.6.21/doBy/man/data-budworm.Rd |only doBy-4.6.21/doBy/man/data-mathmark.Rd |only doBy-4.6.21/doBy/man/data-personality.Rd |only doBy-4.6.21/doBy/vignettes/doby.bib |only doBy-4.6.21/doBy/vignettes/doby.rnw |only doBy-4.6.22/doBy/DESCRIPTION | 13 doBy-4.6.22/doBy/MD5 | 78 ++--- doBy-4.6.22/doBy/NAMESPACE | 3 doBy-4.6.22/doBy/NEWS.md | 6 doBy-4.6.22/doBy/R/DATA_doby.R | 193 ++++++++++++- doBy-4.6.22/doBy/R/NAMESPACE_doby.R | 4 doBy-4.6.22/doBy/R/doby_utilities.R | 355 +++++++++++++++++++++++++ doBy-4.6.22/doBy/R/formula_ops.R | 21 + doBy-4.6.22/doBy/R/model_stability.r | 176 ++++++++---- doBy-4.6.22/doBy/R/plot_functions.r |only doBy-4.6.22/doBy/R/tidy.R | 3 doBy-4.6.22/doBy/build/vignette.rds |binary doBy-4.6.22/doBy/inst/doc/doby.R | 103 +++---- doBy-4.6.22/doBy/inst/doc/doby.html |only doBy-4.6.22/doBy/inst/doc/doby.rmd |only doBy-4.6.22/doBy/inst/doc/linest_lsmeans.pdf |binary doBy-4.6.22/doBy/inst/doc/model_stability.html | 8 doBy-4.6.22/doBy/inst/doc/section_fun.html | 18 - doBy-4.6.22/doBy/man/data_breastcancer.Rd |only doBy-4.6.22/doBy/man/data_budworm.Rd |only doBy-4.6.22/doBy/man/data_cad.Rd | 2 doBy-4.6.22/doBy/man/data_mathmark.Rd |only doBy-4.6.22/doBy/man/data_personality.Rd |only doBy-4.6.22/doBy/man/descStat.Rd | 2 doBy-4.6.22/doBy/man/dietox.Rd | 7 doBy-4.6.22/doBy/man/formula_ops.Rd | 11 doBy-4.6.22/doBy/man/interaction-plot.Rd | 2 doBy-4.6.22/doBy/man/plot_lm.Rd | 2 doBy-4.6.22/doBy/man/recodeVar.Rd | 2 doBy-4.6.22/doBy/man/renameCol.Rd | 2 doBy-4.6.22/doBy/man/set_list_set_matrix.Rd |only doBy-4.6.22/doBy/man/taylor.Rd | 2 doBy-4.6.22/doBy/man/truncate0.Rd | 2 doBy-4.6.22/doBy/man/which.maxn.Rd | 2 doBy-4.6.22/doBy/vignettes/doby.rmd |only 54 files changed, 809 insertions(+), 208 deletions(-)
Title: Tidy Analysis Tools for Mortality, Fertility, Migration and
Population Data
Description: Analysing vital statistics based on tools
consistent with the tidyverse. Tools are provided for data visualization,
lifetable calculations, computing net migration numbers, Lee-Carter
modelling; functional data modelling and forecasting.
Author: Rob Hyndman [aut, cre, cph] ,
Mitchell O'Hara-Wild [ctb]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between vital versions 1.0.0 dated 2024-06-04 and 1.1.0 dated 2024-06-21
DESCRIPTION | 8 MD5 | 95 +++++----- NAMESPACE | 5 NEWS.md | 7 R/FDM.R | 27 +-- R/LC.R | 30 +-- R/augment.R | 8 R/autoplot.R | 6 R/collapse_ages.R | 12 - R/components.R | 24 -- R/dplyr-verbs-fable.R | 84 ++------- R/dplyr-verbs.R | 158 +++++++++--------- R/fable.R | 29 --- R/fabletools.R | 2 R/fmean.R | 29 ++- R/fnaive.R | 24 ++ R/forecast.R | 22 +- R/generate.R | 4 R/interpolate.R | 7 R/life_table.R | 4 R/make_pr.R | 24 +- R/model.R | 27 +-- R/net_migration.R | 12 - R/norway.R | 6 R/smooth.R | 14 - R/total_fertility_rate.R | 8 R/undo_pr.R | 86 +++++---- R/vital.R | 44 +++-- R/vital_vars.R |only README.md | 323 ++++++++++++++++++++++++------------- data/aus_fertility.rda |binary data/aus_mortality.rda |binary data/norway_births.rda |binary data/norway_fertility.rda |binary data/norway_mortality.rda |binary man/autoplot.vital.Rd | 2 man/figures/README-autoplot-1.png |binary man/figures/README-coherent-1.png |binary man/figures/README-e0-1.png |binary man/figures/README-lc2-1.png |binary man/figures/README-lc3-1.png |binary man/figures/README-pyramid-1.png |only man/figures/README-smoothing-1.png |binary man/model.Rd | 2 man/norway_births.Rd | 6 man/vital_vars.Rd |only tests/testthat/test-FDM.R | 12 - tests/testthat/test-FMEAN.R | 10 - tests/testthat/test-FNAIVE.R | 12 - tests/testthat/test-LC.R | 10 - 50 files changed, 651 insertions(+), 532 deletions(-)
Title: Datasets for 'spatstat' Family
Description: Contains all the datasets for the 'spatstat' family of packages.
Author: Adrian Baddeley [aut, cre] ,
Rolf Turner [aut] ,
Ege Rubak [aut] ,
W Aherne [ctb],
Freda Alexander [ctb],
Qi Wei Ang [ctb],
Sourav Banerjee [ctb],
Mark Berman [ctb],
R Bernhardt [ctb],
Thomas Berndtsen [ctb],
Andrew Bevan [ctb],
Jeffrey Betts [ctb],
[...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.data versions 3.0-4 dated 2024-01-15 and 3.1-2 dated 2024-06-21
DESCRIPTION | 10 +-- MD5 | 127 +++++++++++++++++++++++----------------------- NEWS | 22 +++++++ data/Kovesi.rda |binary data/amacrine.rda |binary data/anemones.rda |binary data/ants.rda |binary data/austates.rda |binary data/bdspots.rda |binary data/bei.rda |binary data/betacells.rda |binary data/bramblecanes.rda |binary data/bronzefilter.rda |binary data/btb.rda |binary data/cells.rda |binary data/cetaceans.rda |binary data/chicago.rda |binary data/chorley.rda |binary data/clmfires.rda |binary data/concrete.rda |binary data/copper.rda |binary data/demohyper.rda |binary data/demopat.rda |binary data/dendrite.rda |binary data/finpines.rda |binary data/flu.rda |binary data/ganglia.rda |binary data/gordon.rda |binary data/gorillas.rda |binary data/hamster.rda |binary data/heather.rda |binary data/humberside.rda |binary data/hyytiala.rda |binary data/japanesepines.rda |binary data/lansing.rda |binary data/letterR.rda |binary data/longleaf.rda |binary data/mucosa.rda |binary data/murchison.rda |binary data/nbfires.rda |binary data/nztrees.rda |binary data/osteo.rda |binary data/paracou.rda |binary data/ponderosa.rda |binary data/pyramidal.rda |binary data/redwood.rda |binary data/redwood3.rda |binary data/redwoodfull.rda |binary data/residualspaper.rda |binary data/shapley.rda |binary data/simba.rda |binary data/simdat.rda |binary data/simplenet.rda |binary data/spiders.rda |binary data/sporophores.rda |binary data/spruces.rda |binary data/stonetools.rda |binary data/swedishpines.rda |binary data/urkiola.rda |binary data/vesicles.rda |binary data/waka.rda |binary data/waterstriders.rda |binary inst/doc/packagesizes.txt | 4 + inst/info |only man/murchison.Rd | 2 65 files changed, 95 insertions(+), 70 deletions(-)
Title: 'RStudio' Package Manager
Description: Enables binary package installations on Linux distributions.
Provides access to 'RStudio' public repositories at
<https://packagemanager.posit.co>, and transparent management of
system requirements without administrative privileges. Currently supported
distributions are 'CentOS' / 'RHEL' 7-9, and several 'RHEL' derivatives
('Rocky Linux', 'AlmaLinux', 'Oracle Linux', and 'Amazon Linux'),
'openSUSE' / 'SLES' 15.4-5, 'Debian' 11-12, and 'Ubuntu' LTS 20-22.
Author: Inaki Ucar [aut, cph, cre] ,
R Core Team [aut, cph]
Maintainer: Inaki Ucar <iucar@fedoraproject.org>
Diff between rspm versions 0.5.3 dated 2024-05-20 and 0.6.0 dated 2024-06-21
rspm-0.5.3/rspm/inst/tinytest/test_integration.R |only rspm-0.6.0/rspm/DESCRIPTION | 10 +++---- rspm-0.6.0/rspm/MD5 | 25 +++++++++---------- rspm-0.6.0/rspm/NEWS.md | 5 +++ rspm-0.6.0/rspm/R/manager.R | 20 +++++++++++++-- rspm-0.6.0/rspm/R/os.R | 9 ++++-- rspm-0.6.0/rspm/R/rspm.R | 5 +-- rspm-0.6.0/rspm/R/zzz_centos_base.R | 1 rspm-0.6.0/rspm/R/zzz_debian_base.R | 1 rspm-0.6.0/rspm/R/zzz_debian_like.R | 9 ++++-- rspm-0.6.0/rspm/R/zzz_opensuse_base.R | 1 rspm-0.6.0/rspm/README.md | 2 - rspm-0.6.0/rspm/inst/tinytest/test_integration_ci.R | 26 ++++++++++++++++++-- rspm-0.6.0/rspm/man/rspm-package.Rd | 3 +- 14 files changed, 80 insertions(+), 37 deletions(-)
Title: Download Data from Mexico's Air Quality Information System
Description: Easy-to-use functions for downloading air quality data from
the Mexican National Air Quality Information System (SINAICA). Allows
you to query pollution and meteorological parameters from more than a
hundred monitoring stations located throughout Mexico. See
<https://sinaica.inecc.gob.mx> for more information.
Author: Diego Valle-Jones [aut, cre]
Maintainer: Diego Valle-Jones <diego@diegovalle.net>
Diff between rsinaica versions 1.0.0 dated 2024-02-08 and 1.1.0 dated 2024-06-21
rsinaica-1.0.0/rsinaica/man/sinaica_param_data.Rd |only rsinaica-1.0.0/rsinaica/tests/testthat/test-sinaica_param_data.R |only rsinaica-1.1.0/rsinaica/DESCRIPTION | 6 rsinaica-1.1.0/rsinaica/MD5 | 17 rsinaica-1.1.0/rsinaica/NEWS.md | 7 rsinaica-1.1.0/rsinaica/R/sinaica_param_data.R | 260 ---------- rsinaica-1.1.0/rsinaica/R/sinaica_station_data.R | 2 rsinaica-1.1.0/rsinaica/man/figures/README-unnamed-chunk-3-1.png |binary rsinaica-1.1.0/rsinaica/man/figures/README-unnamed-chunk-6-1.png |binary rsinaica-1.1.0/rsinaica/man/rsinaica-defunct.Rd |only rsinaica-1.1.0/rsinaica/tests/testthat/test-sinaica_params_and_dates.R | 29 - 11 files changed, 31 insertions(+), 290 deletions(-)
Title: How to Add Two R Tables
Description: Methods to "add" two R tables; also an alternative
interpretation of named vectors as generalized R tables, so that
c(a=1,b=2,c=3) + c(b=3,a=-1) will return c(b=5,c=3). Uses
'disordR' discipline (Hankin, 2022,
<doi:10.48550/arXiv.2210.03856>). Extraction and replacement
methods are provided. The underlying mathematical structure is
the Free Abelian group, hence the name. To cite in publications
please use Hankin (2023) <doi:10.48550/arXiv.2307.13184>.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between frab versions 0.0-3 dated 2023-08-16 and 0.0-5 dated 2024-06-21
frab-0.0-3/frab/build/frab.pdf |only frab-0.0-3/frab/build/stage23.rdb |only frab-0.0-5/frab/DESCRIPTION | 27 - frab-0.0-5/frab/MD5 | 62 +-- frab-0.0-5/frab/NAMESPACE | 5 frab-0.0-5/frab/NEWS.md | 14 frab-0.0-5/frab/R/frab.R | 68 +++ frab-0.0-5/frab/R/sparsetable.R | 13 frab-0.0-5/frab/README.md | 36 - frab-0.0-5/frab/build/partial.rdb |binary frab-0.0-5/frab/build/vignette.rds |binary frab-0.0-5/frab/inst/CITATION |only frab-0.0-5/frab/inst/doc/frab.R | 26 - frab-0.0-5/frab/inst/doc/frab.Rmd | 94 +++-- frab-0.0-5/frab/inst/doc/frab.html | 551 ++++++++++++++++++++++-------- frab-0.0-5/frab/inst/frab_arxiv.Rnw | 2 frab-0.0-5/frab/inst/sql.Rmd |only frab-0.0-5/frab/inst/wittgenstein.Rmd | 35 + frab-0.0-5/frab/man/Arith.Rd | 41 +- frab-0.0-5/frab/man/Compare.Rd | 47 +- frab-0.0-5/frab/man/Extract.Rd | 4 frab-0.0-5/frab/man/Summary.Rd |only frab-0.0-5/frab/man/dataframe.Rd |only frab-0.0-5/frab/man/frab.Rd | 5 frab-0.0-5/frab/man/namedvector.Rd | 9 frab-0.0-5/frab/man/pmax.Rd | 2 frab-0.0-5/frab/man/rfrab.Rd | 6 frab-0.0-5/frab/man/sparsetable.Rd | 16 frab-0.0-5/frab/man/zero.Rd | 4 frab-0.0-5/frab/src/frab.cpp | 4 frab-0.0-5/frab/src/sparsetable_ops.cpp | 4 frab-0.0-5/frab/tests/testthat/test_aaa.R | 3 frab-0.0-5/frab/tests/testthat/test_aab.R | 17 frab-0.0-5/frab/tests/testthat/test_aac.R | 3 frab-0.0-5/frab/vignettes/frab.Rmd | 94 +++-- 35 files changed, 834 insertions(+), 358 deletions(-)
Title: Top Chef Data
Description: Several datasets which describe the chef contestants in Top Chef,
the challenges that they compete in, and the results of those challenges.
This data is useful for practicing data wrangling, graphing, and analyzing
how each season of Top Chef played out.
Author: Levitz Carly E [cre, aut, cph]
Maintainer: Levitz Carly E <celevitz@gmail.com>
Diff between topChef versions 0.1.0 dated 2023-06-21 and 0.2.0 dated 2024-06-21
topChef-0.1.0/topChef/inst/doc/topChefChallengeStatisticsBySeason.R |only topChef-0.1.0/topChef/inst/doc/topChefChallengeStatisticsBySeason.Rmd |only topChef-0.1.0/topChef/inst/doc/topChefChallengeStatisticsBySeason.html |only topChef-0.1.0/topChef/vignettes/topChefChallengeStatisticsBySeason.Rmd |only topChef-0.2.0/topChef/DESCRIPTION | 20 - topChef-0.2.0/topChef/LICENSE | 2 topChef-0.2.0/topChef/MD5 | 48 +-- topChef-0.2.0/topChef/NAMESPACE | 1 topChef-0.2.0/topChef/NEWS.md | 24 + topChef-0.2.0/topChef/R/IndexCalculation.R | 106 +++++-- topChef-0.2.0/topChef/R/datasets.R | 6 topChef-0.2.0/topChef/README.md | 136 ++++++---- topChef-0.2.0/topChef/build/vignette.rds |binary topChef-0.2.0/topChef/data/challengedescriptions.rda |binary topChef-0.2.0/topChef/data/challengewins.rda |binary topChef-0.2.0/topChef/data/chefdetails.rda |binary topChef-0.2.0/topChef/data/episodeinfo.rda |binary topChef-0.2.0/topChef/data/judges.rda |binary topChef-0.2.0/topChef/data/rewards.rda |binary topChef-0.2.0/topChef/inst/doc/ChallengeStatisticsBySeason.R |only topChef-0.2.0/topChef/inst/doc/ChallengeStatisticsBySeason.Rmd |only topChef-0.2.0/topChef/inst/doc/ChallengeStatisticsBySeason.html |only topChef-0.2.0/topChef/man/challengewins.Rd | 2 topChef-0.2.0/topChef/man/chefdetails.Rd | 1 topChef-0.2.0/topChef/man/judges.Rd | 3 topChef-0.2.0/topChef/man/topChef-package.Rd | 2 topChef-0.2.0/topChef/man/weightedindex.Rd | 4 topChef-0.2.0/topChef/tests/testthat/test-NAs.R | 47 +++ topChef-0.2.0/topChef/vignettes/ChallengeStatisticsBySeason.Rmd |only 29 files changed, 280 insertions(+), 122 deletions(-)
Title: Trust, but Verify
Description: Declarative template-based framework for verifying that objects
meet structural requirements, and auto-composing error messages when they do
not.
Author: Brodie Gaslam [aut, cre],
Paxdiablo [cph] ,
R Core Team [cph]
Maintainer: Brodie Gaslam <brodie.gaslam@yahoo.com>
Diff between vetr versions 0.2.16 dated 2023-12-07 and 0.2.18 dated 2024-06-21
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NEWS.md | 8 ++++++++ README.md | 19 +++++++++++++++---- build/vignette.rds |binary inst/doc/alike.html | 20 ++++++++++---------- inst/doc/vetr.html | 14 +++++++------- src/alike.h | 1 + src/fun.c | 24 ++++++++++++++++-------- src/init.c | 2 ++ src/merge.c | 14 ++++++-------- src/r-copied.c | 2 +- vignettes/rmdhunks/related-packages.Rmd | 2 +- 13 files changed, 82 insertions(+), 54 deletions(-)
Title: Create Common TLGs Used in Clinical Trials
Description: Table, Listings, and Graphs (TLG) library for common outputs
used in clinical trials.
Author: Joe Zhu [aut, cre],
Daniel Sabanes Bove [aut],
Jana Stoilova [aut],
Davide Garolini [aut],
Emily de la Rua [aut],
Abinaya Yogasekaram [aut],
Heng Wang [aut],
Francois Collin [aut],
Adrian Waddell [aut],
Pawel Rucki [aut],
Chendi Liao [aut],
Jennifer [...truncated...]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between tern versions 0.9.4 dated 2024-04-17 and 0.9.5 dated 2024-06-21
DESCRIPTION | 12 MD5 | 86 +- NEWS.md | 15 R/argument_convention.R | 5 R/cox_regression.R | 2 R/decorate_grob.R | 74 + R/g_forest.R | 2 R/g_km.R | 4 R/g_lineplot.R | 44 - R/summarize_ancova.R | 4 R/survival_biomarkers_subgroups.R | 18 R/survival_duration_subgroups.R | 20 R/utils_ggplot.R | 2 R/utils_split_funs.R | 2 README.md | 2 build/partial.rdb |binary inst/WORDLIST | 3 man/argument_convention.Rd | 6 man/decorate_grob.Rd | 28 man/g_km.Rd | 2 man/g_lineplot.Rd | 13 man/h_ggkm.Rd | 2 man/survival_biomarkers_subgroups.Rd | 6 man/survival_duration_subgroups.Rd | 9 man/tidy_coxreg.Rd | 2 man/utils_split_funs.Rd | 2 tests/testthat/_snaps/decorate_grob/deco_grob_text_wrap.svg | 411 +++++----- tests/testthat/_snaps/g_forest/g_forest.svg | 8 tests/testthat/_snaps/g_forest/g_forest_or.svg | 8 tests/testthat/_snaps/g_forest/g_forest_table_only.svg | 8 tests/testthat/_snaps/g_lineplot/g_lineplot_factor_levels.svg |only tests/testthat/_snaps/g_lineplot/g_lineplot_xlim_ylim.svg |only tests/testthat/_snaps/g_lineplot/g_lineplot_xticks.svg |only tests/testthat/_snaps/g_lineplot/g_lineplot_xticks_by.svg |only tests/testthat/_snaps/summarize_ancova.md | 32 tests/testthat/_snaps/survival_biomarkers_subgroups.md | 26 tests/testthat/_snaps/survival_duration_subgroups.md | 17 tests/testthat/_snaps/utils_ggplot/rtable2gg_cw.svg | 24 tests/testthat/_snaps/utils_ggplot/rtable2gg_default.svg | 102 +- tests/testthat/_snaps/utils_ggplot/rtable2gg_fs.svg | 102 +- tests/testthat/_snaps/utils_ggplot/rtable2gg_lblpad.svg | 102 +- tests/testthat/test-decorate_grob.R | 7 tests/testthat/test-g_lineplot.R | 86 ++ tests/testthat/test-summarize_ancova.R | 23 tests/testthat/test-survival_biomarkers_subgroups.R | 25 tests/testthat/test-survival_duration_subgroups.R | 18 46 files changed, 846 insertions(+), 518 deletions(-)
Title: Sparse Three-Dimensional Arrays and Linear Algebra Utilities
Description: Defines sparse three-dimensional arrays
and supports standard operations on them.
The package also includes utility functions for
matrix calculations that are common in
statistics, such as quadratic forms.
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.sparse versions 3.0-3 dated 2023-10-24 and 3.1-0 dated 2024-06-21
DESCRIPTION | 10 +++++----- MD5 | 9 +++++---- NEWS | 7 +++++++ R/matrixpower.R | 8 ++++---- inst/doc/packagesizes.txt | 1 + inst/info |only 6 files changed, 22 insertions(+), 13 deletions(-)
More information about spatstat.sparse at CRAN
Permanent link
Title: Simulate Data from State Space Models
Description: Provides a streamlined and user-friendly framework
for simulating data in state space models,
particularly when the number of subjects/units (n) exceeds one,
a scenario commonly encountered in social and behavioral sciences.
For an introduction to state space models in social and behavioral sciences,
refer to Chow, Ho, Hamaker, and Dolan (2010) <doi:10.1080/10705511003661553>.
Author: Ivan Jacob Agaloos Pesigan [aut, cre, cph]
Maintainer: Ivan Jacob Agaloos Pesigan <r.jeksterslab@gmail.com>
Diff between simStateSpace versions 1.2.1 dated 2024-05-13 and 1.2.2 dated 2024-06-21
simStateSpace-1.2.1/simStateSpace/R/simStateSpace-dot-test-positive-definite.R |only simStateSpace-1.2.1/simStateSpace/R/simStateSpace-dot-test-stationarity.R |only simStateSpace-1.2.1/simStateSpace/tests/testthat/session |only simStateSpace-1.2.2/simStateSpace/DESCRIPTION | 6 simStateSpace-1.2.2/simStateSpace/MD5 | 66 - simStateSpace-1.2.2/simStateSpace/NAMESPACE | 5 simStateSpace-1.2.2/simStateSpace/NEWS.md | 10 simStateSpace-1.2.2/simStateSpace/R/RcppExports.R | 169 ++ simStateSpace-1.2.2/simStateSpace/R/simStateSpace-sim-ssm-i-vary.R | 6 simStateSpace-1.2.2/simStateSpace/R/simStateSpace-sim-ssm-lin-sde-i-vary.R | 6 simStateSpace-1.2.2/simStateSpace/R/simStateSpace-sim-ssm-ou-fixed.R | 25 simStateSpace-1.2.2/simStateSpace/R/simStateSpace-sim-ssm-ou-i-vary.R | 11 simStateSpace-1.2.2/simStateSpace/build/partial.rdb |binary simStateSpace-1.2.2/simStateSpace/man/LinSDE2SSM.Rd | 7 simStateSpace-1.2.2/simStateSpace/man/SimBetaN.Rd |only simStateSpace-1.2.2/simStateSpace/man/SimPhiN.Rd |only simStateSpace-1.2.2/simStateSpace/man/SimSSMFixed.Rd | 7 simStateSpace-1.2.2/simStateSpace/man/SimSSMIVary.Rd | 7 simStateSpace-1.2.2/simStateSpace/man/SimSSMLinGrowth.Rd | 7 simStateSpace-1.2.2/simStateSpace/man/SimSSMLinGrowthIVary.Rd | 14 simStateSpace-1.2.2/simStateSpace/man/SimSSMLinSDEFixed.Rd | 7 simStateSpace-1.2.2/simStateSpace/man/SimSSMLinSDEIVary.Rd | 7 simStateSpace-1.2.2/simStateSpace/man/SimSSMOUFixed.Rd | 32 simStateSpace-1.2.2/simStateSpace/man/SimSSMOUIVary.Rd | 12 simStateSpace-1.2.2/simStateSpace/man/SimSSMVARFixed.Rd | 7 simStateSpace-1.2.2/simStateSpace/man/SimSSMVARIVary.Rd | 7 simStateSpace-1.2.2/simStateSpace/man/TestPhi.Rd |only simStateSpace-1.2.2/simStateSpace/man/TestStability.Rd |only simStateSpace-1.2.2/simStateSpace/man/TestStationarity.Rd |only simStateSpace-1.2.2/simStateSpace/src/RcppExports.cpp | 142 +- simStateSpace-1.2.2/simStateSpace/src/source.cpp | 571 +++++++--- simStateSpace-1.2.2/simStateSpace/tests/testthat/test-simStateSpace-sim-beta-n.R |only simStateSpace-1.2.2/simStateSpace/tests/testthat/test-simStateSpace-sim-phi-n.R |only simStateSpace-1.2.2/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-i-vary.R | 14 simStateSpace-1.2.2/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-lin-sde-fixed.R | 15 simStateSpace-1.2.2/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-lin-sde-i-vary.R | 14 simStateSpace-1.2.2/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-ou-i-vary.R | 14 simStateSpace-1.2.2/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-var-i-vary.R | 14 simStateSpace-1.2.2/simStateSpace/tests/testthat/test-simStateSpace-tests.R | 37 39 files changed, 945 insertions(+), 294 deletions(-)
Title: Nonparametric Bootstrap Test with Pooled Resampling
Description: Addressing crucial research questions often necessitates a small
sample size due to factors such as distinctive target populations, rarity
of the event under study, time and cost constraints, ethical concerns, or
group-level unit of analysis. Many readily available analytic methods,
however, do not accommodate small sample sizes, and the choice of the best
method can be unclear. The 'npboottprm' package enables the execution of
nonparametric bootstrap tests with pooled resampling to help fill this gap.
Grounded in the statistical methods for small sample size studies detailed
in Dwivedi, Mallawaarachchi, and Alvarado (2017) <doi:10.1002/sim.7263>, the
package facilitates a range of statistical tests, encompassing independent
t-tests, paired t-tests, and one-way Analysis of Variance (ANOVA) F-tests.
The nonparboot() function undertakes essential computations, yielding
detailed outputs which include test statistics, effect sizes, confidence
intervals, and bootstrap distributions. F [...truncated...]
Author: Mackson Ncube [aut, cre],
mightymetrika, LLC [cph, fnd]
Maintainer: Mackson Ncube <macksonncube.stats@gmail.com>
Diff between npboottprm versions 0.2.1 dated 2024-02-23 and 0.3.0 dated 2024-06-21
DESCRIPTION | 10 +- MD5 | 14 ++- NAMESPACE | 1 NEWS.md | 7 + R/replext.R | 202 +++++++++++++++++++++++++-------------------------- R/replext_helpers.R | 44 ++++++----- R/replext_pgsql.R |only man/replext.Rd | 8 +- man/replext_pgsql.Rd |only 9 files changed, 155 insertions(+), 131 deletions(-)