Title: Artificial Spatial and Spatio-Temporal Densities on Bounded
Windows
Description: Simple utilities to design and generate density functions on bounded regions in space and space-time, and simulate independent, identically distributed data therefrom. See Davies & Lawson (2019) <doi:10.1080/00949655.2019.1575066> for example.
Author: Anna K. Redmond [aut],
Tilman M. Davies [aut, cre]
Maintainer: Tilman M. Davies <tilman.davies@otago.ac.nz>
Diff between spagmix versions 0.4-1 dated 2024-05-29 and 0.4-2 dated 2024-06-24
DESCRIPTION | 8 ++++---- MD5 | 10 ++++++---- NAMESPACE | 4 ++-- NEWS | 16 ++++++++++++++-- R/lgcpmix.R |only man/lgcpmix.Rd |only man/spagmix-package.Rd | 10 +++++----- 7 files changed, 31 insertions(+), 17 deletions(-)
Title: Convert Images to Usable Color Schemes
Description: A fast and adaptable tool to convert photos and images into usable colour schemes for data visualisation. Contains functionality to extract colour palettes from images, as well for the conversion of images between colour spaces.
Author: Stuart Morrison [aut, cre]
Maintainer: Stuart Morrison <smorrison@ucdavis.edu>
Diff between schemr versions 0.2.0 dated 2023-02-02 and 0.3.0 dated 2024-06-24
DESCRIPTION | 13 - MD5 | 26 ++- NAMESPACE | 14 + NEWS.md | 4 R/color-spaces.R | 303 +++++++++++++++++++++++++++++++++++++ README.md | 21 +- man/hsl_to_hsv.Rd |only man/hsl_to_lab.Rd |only man/hsl_to_rgb.Rd |only man/hsl_to_xyz.Rd |only man/hsv_to_hsl.Rd |only man/hsv_to_lab.Rd |only man/hsv_to_rgb.Rd |only man/hsv_to_xyz.Rd |only man/lab_to_hsl.Rd |only man/lab_to_hsv.Rd |only man/rgb_to_hsl.Rd |only man/rgb_to_hsv.Rd |only man/xyz_to_hsl.Rd |only man/xyz_to_hsv.Rd |only tests/testthat/test-color-spaces.R | 41 +++-- 21 files changed, 389 insertions(+), 33 deletions(-)
Title: Patterned Fills for 'ggplot2' and 'grid' Graphics
Description: Adds distinctive yet unobtrusive geometric patterns where solid
color fills are normally used. Patterned figures look just as
professional when viewed by colorblind readers or when printed in black
and white. The dozen included patterns can be customized in terms of scale,
rotation, color, fill, line type, and line width. Compatible with the
'ggplot2' package as well as 'grid' graphics.
Author: Daniel P. Smith [aut, cre] ,
Alkek Center for Metagenomics and Microbiome Research [cph, fnd]
Maintainer: Daniel P. Smith <dansmith01@gmail.com>
Diff between fillpattern versions 1.0.1 dated 2024-03-09 and 1.0.2 dated 2024-06-24
DESCRIPTION | 8 MD5 | 20 - NAMESPACE | 2 NEWS.md | 6 R/fill_pattern.r | 58 +- R/makeContent.r | 618 ++++++++++++++++--------------- R/scale_fill_pattern.r | 16 README.md | 13 man/figures/README-unnamed-chunk-3-1.png |binary man/fill_pattern.Rd | 16 man/scale_fill_pattern.Rd | 15 11 files changed, 423 insertions(+), 349 deletions(-)
Title: Designing and Weighting Survey Samples
Description: Functions and datasets to support Valliant, Dever, and Kreuter (2018), <doi:10.1007/978-3-319-93632-1>, "Practical Tools for Designing and Weighting Survey Samples". Contains functions for sample size calculation for survey samples using stratified or clustered one-, two-, and three-stage sample designs, and single-stage audit sample designs. Functions are included that will group geographic units accounting for distances apart and measures of size. Other functions compute variance components for multistage designs and sample sizes in two-phase designs. A number of example data sets are included.
Author: Richard Valliant [aut, cre],
Jill A. Dever [ctb],
Frauke Kreuter [ctb],
George Zipf [aut]
Maintainer: Richard Valliant <valliant@umich.edu>
Diff between PracTools versions 1.4.3 dated 2024-03-05 and 1.5 dated 2024-06-24
DESCRIPTION | 8 ++--- MD5 | 54 ++++++++++++++++++++---------------- NAMESPACE | 5 +++ NEWS.md | 10 ++++++ R/clusOpt2.R | 6 +++- R/nEdge.R |only R/nEdgeSRS.R |only R/quad_roots.R |only R/wtd.moments.R |only build/vignette.rds |binary data/Domainy1y2.RData |binary data/MDarea.popA.RData |binary data/TPV.RData |binary data/Test_Data_US.RData |binary data/ThirdGrade.RData |binary data/hospital.RData |binary data/labor.RData |binary data/mibrfss.RData |binary data/nhis.RData |binary data/nhis.large.RData |binary data/nhispart.RData |binary data/smho.N874.RData |binary data/smho98.RData |binary inst/doc/Design-effects.html | 9 +++--- inst/doc/Distance-and-MOS-PSUs.html | 9 +++--- inst/doc/Select-samsize-fcns.html | 3 +- inst/doc/Singlestage-samsize.html | 9 +++--- inst/doc/Varcomps-multistage.html | 21 +++++++------- man/nEdge.Rd |only man/nEdgeSRS.Rd |only man/quad_roots.Rd |only man/wtd.moments.Rd |only 32 files changed, 83 insertions(+), 51 deletions(-)
Title: Helper Functions for 'mlr3'
Description: Frequently used helper functions and assertions used in
'mlr3' and its companion packages. Comes with helper functions for
functional programming, for printing, to work with 'data.table', as
well as some generally useful 'R6' classes. This package also
supersedes the package 'BBmisc'.
Author: Michel Lang [cre, aut] ,
Patrick Schratz [aut]
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3misc versions 0.15.0 dated 2024-04-10 and 0.15.1 dated 2024-06-24
DESCRIPTION | 6 +-- MD5 | 40 +++++++++++----------- NAMESPACE | 1 NEWS.md | 4 ++ R/Callback.R | 14 ++++++-- R/as_short_string.R | 12 +++--- R/cross_join.R | 2 - R/format_bib.R | 2 - R/get_private.R | 2 - R/topo_sort.R | 2 - man/as_callback.Rd | 3 + man/assert_callback.Rd | 5 ++ man/cross_join.Rd | 2 - man/get_private-set.Rd | 2 - src/keep_in_bounds.c | 63 +++++++++++++----------------------- tests/testthat/test_encapsulate.R | 4 +- tests/testthat/test_insert.R | 20 +++++------ tests/testthat/test_map.R | 6 +-- tests/testthat/test_names2.R | 2 - tests/testthat/test_set_params.R | 6 +-- tests/testthat/test_strip_srcrefs.R | 2 - 21 files changed, 101 insertions(+), 99 deletions(-)
Title: ArcGIS Location Services Meta-Package
Description: Provides easy installation and loading of core ArcGIS
location services packages 'arcgislayers', 'arcgisutils',
'arcgisgeocode', and 'arcgisplaces'. Enabling developers to interact
with spatial data and services from 'ArcGIS Online', 'ArcGIS
Enterprise', and 'ArcGIS Platform'. Learn more about the 'arcgis'
meta-package at <https://r.esri.com/r-bridge-site/>.
Author: Josiah Parry [aut, cre]
Maintainer: Josiah Parry <josiah.parry@gmail.com>
Diff between arcgis versions 0.1.0 dated 2024-03-05 and 0.1.1 dated 2024-06-24
DESCRIPTION | 22 +++++++++++++--------- MD5 | 6 +++--- R/attach.R | 20 +++++++++++--------- man/arcgis-package.Rd | 2 +- 4 files changed, 28 insertions(+), 22 deletions(-)
Title: Provides a 'PySpark' Back-End for the 'sparklyr' Package
Description: It enables 'sparklyr' to integrate with 'Spark Connect', and
'Databricks Connect' by providing a wrapper over the 'PySpark' 'python'
library.
Author: Edgar Ruiz [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Edgar Ruiz <edgar@posit.co>
Diff between pysparklyr versions 0.1.4 dated 2024-04-16 and 0.1.5 dated 2024-06-24
DESCRIPTION | 12 ++++++------ MD5 | 20 ++++++++++---------- NEWS.md | 15 +++++++++++++++ R/dplyr.R | 13 ++++++++++++- R/python-to-pandas-cleaned.R | 11 +++++++++++ R/python-use-envname.R | 11 +++++++++-- R/sparklyr-spark-apply.R | 2 +- R/utils.R | 4 ++++ inst/udf/udf-apply.py | 2 +- inst/udf/udf-map.py | 2 +- tests/testthat/test-dplyr.R | 10 ++++++++++ 11 files changed, 80 insertions(+), 22 deletions(-)
Title: Real-Time Disease Surveillance
Description: Supports modelling real-time case data to facilitate the real-time
surveillance of infectious diseases and other point phenomena. The package provides automated computational grid generation over
an area of interest with methods to map covariates between geographies, model fitting including spatially aggregated case counts,
and predictions and visualisation. Both Bayesian and maximum likelihood methods are provided. Log-Gaussian Cox Processes are described by
Diggle et al. (2013) <doi:10.1214/13-STS441> and we provide both the low-rank approximation for Gaussian processes
described by Solin and Särkkä (2020) <doi:10.1007/s11222-019-09886-w> and Riutort-Mayol et al (2023) <doi:10.1007/s11222-022-10167-2> and the
nearest neighbour Gaussian process described by Datta et al (2016) <doi:10.1080/01621459.2015.1044091>. 'cmdstanr' can be downloaded at <https://mc-stan.org/cmdstanr/>.
Author: Sam Watson [aut, cre]
Maintainer: Sam Watson <s.i.watson@bham.ac.uk>
Diff between rts2 versions 0.7.4 dated 2024-04-03 and 0.7.5 dated 2024-06-24
DESCRIPTION | 10 +++--- MD5 | 8 ++--- R/griddata_class.R | 3 + build/partial.rdb |binary inst/include/rts/rtsmodeloptim.h | 61 +++++++++++++++++++++++++++++++-------- 5 files changed, 60 insertions(+), 22 deletions(-)
Title: Data on Base and Recommended Packages for Current and Previous
Versions of R
Description: Provides a dataset of functions in all base and recommended packages of R versions 0.50 onwards.
Author: David Hugh-Jones [aut, cre]
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>
Diff between rcheology versions 4.4.0.0 dated 2024-04-30 and 4.4.1.0 dated 2024-06-24
DESCRIPTION | 6 +- MD5 | 14 +++--- NEWS.md | 5 ++ README.md | 64 +++++++++++-------------------- data/Rversions.rda |binary data/rcheology.rda |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary 8 files changed, 38 insertions(+), 51 deletions(-)
Title: General-Purpose Unconstrained Non-Linear Optimization
Description: An algorithm for general-purpose unconstrained non-linear optimization.
The algorithm is of quasi-Newton type with BFGS updating of the inverse
Hessian and soft line search with a trust region type monitoring of the
input to the line search algorithm. The interface of 'ucminf' is
designed for easy interchange with 'optim'.
Author: K Herve Dakpo [ctb, cre],
Hans Bruun Nielsen [aut],
Stig Bousgaard Mortensen [aut]
Maintainer: K Herve Dakpo <k-herve.dakpo@inrae.fr>
Diff between ucminf versions 1.2.1 dated 2023-12-13 and 1.2.2 dated 2024-06-24
DESCRIPTION | 8 ++--- MD5 | 10 +++---- NEWS.md | 32 +++++++++++++--------- R/ucminf-package.R | 71 +++++++++++++++++++++++++------------------------- man/ucminf-package.Rd | 2 - src/fortran.f | 46 +++++++++++++++++--------------- 6 files changed, 90 insertions(+), 79 deletions(-)
Title: Extracting Insights from Biological Images
Description: Combines the 'magick' and 'imager' packages to streamline image analysis, focusing on feature extraction and quantification from biological images, especially
microparticles. By providing high throughput pipelines and clustering capabilities, 'biopixR' facilitates efficient insight generation for researchers (Schneider J. et al. (2019)
<doi:10.21037/jlpm.2019.04.05>).
Author: Tim Brauckhoff [aut, cre] ,
Stefan Roediger [ctb] ,
Coline Kieffer [ctb]
Maintainer: Tim Brauckhoff <brauctile@disroot.org>
Diff between biopixR versions 1.0.0 dated 2024-06-02 and 1.1.0 dated 2024-06-24
CHANGELOG | 5 DESCRIPTION | 6 MD5 | 18 - R/proximityFilter.R | 4 R/sizeFilter.R | 55 ++- inst/doc/biopixR.R | 196 ++---------- inst/doc/biopixR.Rmd | 475 ++++++++--------------------- inst/doc/biopixR.html | 802 ++++++++++++-------------------------------------- man/sizeFilter.Rd | 4 vignettes/biopixR.Rmd | 475 ++++++++--------------------- 10 files changed, 581 insertions(+), 1459 deletions(-)
Title: Fit Distributions and Neural Networks to Censored and Truncated
Data
Description: Define distribution families and fit them to
interval-censored and interval-truncated data, where the truncation
bounds may depend on the individual observation. The defined
distributions feature density, probability, sampling and fitting
methods as well as efficient implementations of the log-density log
f(x) and log-probability log P(x0 <= X <= x1) for use in 'TensorFlow'
neural networks via the 'tensorflow' package. Allows training
parametric neural networks on interval-censored and interval-truncated
data with flexible parameterization. Applications include Claims
Development in Non-Life Insurance, e.g. modelling reporting delay
distributions from incomplete data, see Bücher, Rosenstock (2022)
<doi:10.1007/s13385-022-00314-4>.
Author: Alexander Rosenstock [aut, cre, cph]
Maintainer: Alexander Rosenstock <alexander.rosenstock@web.de>
Diff between reservr versions 0.0.2 dated 2023-10-18 and 0.0.3 dated 2024-06-24
DESCRIPTION | 16 MD5 | 89 ++-- NEWS.md | 5 R/callback_adaptive_lr.R | 147 +------ R/callback_debug_dist_gradients.R | 64 +-- R/dist_blended.R | 35 - R/dist_discrete.R | 11 R/dist_erlangmix.R | 27 - R/dist_mixture.R | 9 R/distribution_class.R | 8 R/interval.R | 50 +- R/tf_compile.R | 23 - R/tf_constants.R | 4 R/tf_fit.R | 20 R/tf_initialise.R | 8 R/tf_util.R | 13 build/vignette.rds |binary inst/doc/distributions.html | 22 - inst/doc/jss_paper.R |only inst/doc/jss_paper.Rmd |only inst/doc/jss_paper.html |only inst/doc/tensorflow.R | 21 - inst/doc/tensorflow.Rmd | 23 - inst/doc/tensorflow.html | 710 ++++++++++++----------------------- man/as_params.Rd | 4 man/callback_adaptive_lr.Rd | 16 man/callback_debug_dist_gradients.Rd | 18 man/fit.reservr_keras_model.Rd | 189 ++++++--- man/k_matrix.Rd | 4 man/predict.reservr_keras_model.Rd | 6 man/tf_compile_model.Rd | 75 +-- man/tf_initialise_model.Rd | 6 src/compiled_dist.cpp | 24 + src/dgamma_matrix.cpp | 8 src/erlang_mixture.cpp | 8 src/integrate.cpp | 4 src/softmax.cpp | 11 tests/testthat/helpers.R | 16 tests/testthat/test-dist_dirac.R | 4 tests/testthat/test-dist_erlangmix.R | 6 tests/testthat/test-integrate.R | 1 tests/testthat/test-interval.R | 9 tests/testthat/test-softmax.R | 5 tests/testthat/test-tf_fit.R | 62 +-- tests/testthat/test-tf_initialise.R | 6 vignettes/bibliography.bib |only vignettes/jss_paper.Rmd |only vignettes/tensorflow.Rmd | 23 - 48 files changed, 826 insertions(+), 984 deletions(-)
More information about dartR.sexlinked at CRAN
Permanent link
Title: Prior Diagnostics and Sensitivity Analysis
Description: Provides functions for prior and likelihood sensitivity analysis in Bayesian models. Currently it implements methods to determine the sensitivity of the posterior to power-scaling perturbations of the prior and likelihood.
Author: Noa Kallioinen [aut, cre, cph],
Topi Paananen [aut],
Paul-Christian Buerkner [aut],
Aki Vehtari [aut],
Frank Weber [ctb]
Maintainer: Noa Kallioinen <noa.kallioinen@aalto.fi>
Diff between priorsense versions 1.0.0 dated 2024-06-20 and 1.0.1 dated 2024-06-24
DESCRIPTION | 10 +++++----- MD5 | 17 +++++++++-------- NEWS.md | 4 ++++ inst/CITATION | 31 ++++++++++++++++++------------- inst/doc/powerscaling.Rmd | 2 +- inst/doc/powerscaling.html | 2 +- inst/logo/logo.R | 2 +- man/figures/logo_large.png |only man/priorsense-package.Rd | 2 +- vignettes/powerscaling.Rmd | 2 +- 10 files changed, 41 insertions(+), 31 deletions(-)
Title: Package of the German Book "Statistik mit R und RStudio" by
Joerg grosse Schlarmann
Description: All datasets and functions used in the german book "Statistik mit R und RStudio" by grosse Schlarmann (2010-2024) <https://www.produnis.de/R/>.
Author: Joerg grosse Schlarmann [aut, cre]
Maintainer: Joerg grosse Schlarmann <schlarmann@produnis.de>
Diff between jgsbook versions 1.0.6 dated 2024-06-20 and 1.0.7 dated 2024-06-24
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ R/functions.R | 2 +- 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Ontology Tools with Data FAIRification in Development
Description: Translates several CSV files with ontological terms and corresponding
data into RDF triples. These RDF triples are stored in OWL and JSON-LD files,
facilitating data accessibility, interoperability, and knowledge unification.
The triples are also visualized in a graph saved as an SVG. The input CSVs
must be formatted with a template from a public Google Sheet; see README or
vignette for more information. This is a tool is used by the SDLE Research
Center at Case Western Reserve University to create and visualize material
science ontologies, and it includes example ontologies to demonstrate its
capabilities. This work was supported by the U.S. Department of Energy’s
Office of Energy Efficiency and Renewable Energy (EERE) under Solar Energy
Technologies Office (SETO) Agreement Numbers E-EE0009353 and DE-EE0009347,
Department of Energy (National Nuclear Security Administration) under Award
Number DE-NA0004104 and Contract number B647887, and U.S. National Science
Foundation Award under Aw [...truncated...]
Author: Jonathan E Gordon [aut] ,
Alexander Harding Bradley [aut]
,
Priyan Rajamohan [aut] ,
Nathaniel Hahn [aut],
Kiefer Lin [aut],
Arafath Nihar [aut] ,
Hayden Cadwell [aut],
Jiana Kambo [aut],
Jayvic Jimenez [aut] ,
Kristen J Hernandez [aut] ,
Hein Htet-A [...truncated...]
Maintainer: Roger H French <roger.french@case.edu>
Diff between FAIRmaterials versions 0.4.1 dated 2023-08-09 and 0.4.2 dated 2024-06-24
FAIRmaterials-0.4.1/FAIRmaterials/R/external_functions.R |only FAIRmaterials-0.4.1/FAIRmaterials/R/fairify_data.R |only FAIRmaterials-0.4.1/FAIRmaterials/data |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/FAIRification.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/FAIRification.html |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/asterGdem.R |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/asterGdem.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/asterGdem.html |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/buildings.R |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/buildings.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/buildings.html |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/capillaryElectrophoresis.R |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/capillaryElectrophoresis.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/capillaryElectrophoresis.html |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/caryUvVis.R |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/caryUvVis.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/caryUvVis.html |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/computedTomographyXRay.R |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/computedTomographyXRay.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/computedTomographyXRay.html |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/currentVoltage.R |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/currentVoltage.html |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/currentVoltage.rmd |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/diffractionXRay.R |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/diffractionXRay.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/diffractionXRay.html |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/environmentalExposure.R |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/environmentalExposure.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/environmentalExposure.html |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/fluoroelastomerFormulations.R |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/fluoroelastomerFormulations.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/fluoroelastomerFormulations.html |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/geospatialWell.R |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/geospatialWell.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/geospatialWell.html |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/materialsProcessing.R |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/materialsProcessing.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/materialsProcessing.html |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/metalAdditiveManufacturing.R |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/metalAdditiveManufacturing.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/metalAdditiveManufacturing.html |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/opticalProfilometry.R |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/opticalProfilometry.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/opticalProfilometry.html |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/opticalSpectroscopy.R |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/opticalSpectroscopy.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/opticalSpectroscopy.html |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/photovoltaicBacksheet.R |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/photovoltaicBacksheet.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/photovoltaicBacksheet.html |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/photovoltaicCell.R |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/photovoltaicCell.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/photovoltaicCell.html |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/photovoltaicInverter.R |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/photovoltaicInverter.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/photovoltaicInverter.html |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/photovoltaicModule.R |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/photovoltaicModule.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/photovoltaicModule.html |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/photovoltaicSystem.R |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/photovoltaicSystem.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/photovoltaicSystem.html |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/polymerAdditiveManufacturing.R |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/polymerAdditiveManufacturing.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/polymerAdditiveManufacturing.html |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/soil.R |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/soil.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/soil.html |only FAIRmaterials-0.4.1/FAIRmaterials/inst/doc/soilWosis.R |only 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FAIRmaterials-0.4.1/FAIRmaterials/man/calibration.Rd |only FAIRmaterials-0.4.1/FAIRmaterials/man/capillaryElectrophoresis.Rd |only FAIRmaterials-0.4.1/FAIRmaterials/man/capillaryEletrophoresis.Rd |only FAIRmaterials-0.4.1/FAIRmaterials/man/caryUvVis.Rd |only FAIRmaterials-0.4.1/FAIRmaterials/man/computedTomographyXRay.Rd |only FAIRmaterials-0.4.1/FAIRmaterials/man/currentVoltage.Rd |only FAIRmaterials-0.4.1/FAIRmaterials/man/diffractionXRay.Rd |only FAIRmaterials-0.4.1/FAIRmaterials/man/environmentalExposure.Rd |only FAIRmaterials-0.4.1/FAIRmaterials/man/fair_expand.Rd |only FAIRmaterials-0.4.1/FAIRmaterials/man/fairify_data.Rd |only FAIRmaterials-0.4.1/FAIRmaterials/man/fluoroelastometerFormulation.Rd |only FAIRmaterials-0.4.1/FAIRmaterials/man/fluoroelastometerFormulationAFMExpMetadata.Rd |only FAIRmaterials-0.4.1/FAIRmaterials/man/fluoroelastometerFormulationInstrument.Rd |only FAIRmaterials-0.4.1/FAIRmaterials/man/fluoroelastometerFormulationResults.Rd |only 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FAIRmaterials-0.4.1/FAIRmaterials/vignettes/FAIRification.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/vignettes/PolymerFormulation.png |only FAIRmaterials-0.4.1/FAIRmaterials/vignettes/SoilWoSis.png |only FAIRmaterials-0.4.1/FAIRmaterials/vignettes/XRD.drawio.png |only FAIRmaterials-0.4.1/FAIRmaterials/vignettes/asterGdem.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/vignettes/asterGdem.png |only FAIRmaterials-0.4.1/FAIRmaterials/vignettes/building_schema.png |only FAIRmaterials-0.4.1/FAIRmaterials/vignettes/buildings.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/vignettes/capillaryElectrophoresis.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/vignettes/capillaryElectrophoresis.png |only FAIRmaterials-0.4.1/FAIRmaterials/vignettes/caryUvVis.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/vignettes/caryUvVis.png |only FAIRmaterials-0.4.1/FAIRmaterials/vignettes/computedTomographyXRay.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/vignettes/computedTomographyXRay.png |only 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FAIRmaterials-0.4.1/FAIRmaterials/vignettes/pv-backsheet.png |only FAIRmaterials-0.4.1/FAIRmaterials/vignettes/pv-module.png |only FAIRmaterials-0.4.1/FAIRmaterials/vignettes/pv-system.png |only FAIRmaterials-0.4.1/FAIRmaterials/vignettes/soil.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/vignettes/soil.png |only FAIRmaterials-0.4.1/FAIRmaterials/vignettes/soilWosis.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/vignettes/streamWater.png |only FAIRmaterials-0.4.1/FAIRmaterials/vignettes/streamWaterRasterio.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/vignettes/waterUSGS.Rmd |only FAIRmaterials-0.4.1/FAIRmaterials/vignettes/waterUSGS.png |only FAIRmaterials-0.4.1/FAIRmaterials/vignettes/well_log.png |only FAIRmaterials-0.4.2/FAIRmaterials/DESCRIPTION | 444 ++++++---- FAIRmaterials-0.4.2/FAIRmaterials/MD5 | 264 ----- FAIRmaterials-0.4.2/FAIRmaterials/NAMESPACE | 29 FAIRmaterials-0.4.2/FAIRmaterials/R/extra_functions.R |only FAIRmaterials-0.4.2/FAIRmaterials/R/process_ontology_files.R |only 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Title: A Distributed Worker Launcher Framework
Description: In computationally demanding analysis projects,
statisticians and data scientists asynchronously
deploy long-running tasks to distributed systems,
ranging from traditional clusters to cloud services.
The 'NNG'-powered 'mirai' R package by Gao (2023)
<doi:10.5281/zenodo.7912722> is a sleek
and sophisticated scheduler that
efficiently processes these intense workloads.
The 'crew' package extends 'mirai' with a unifying
interface for third-party worker launchers.
Inspiration also comes from packages.
'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>,
'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>,
'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>),
and 'batchtools' by Lang, Bischel, and Surmann (2017)
<doi:10.21105/joss.00135>.
Author: William Michael Landau [aut, cre]
,
Daniel Woodie [ctb],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between crew versions 0.9.4 dated 2024-06-20 and 0.9.5 dated 2024-06-24
crew-0.9.4/crew/inst/doc/groups.R |only crew-0.9.4/crew/inst/doc/introduction.R |only crew-0.9.4/crew/inst/doc/risks.R |only crew-0.9.5/crew/DESCRIPTION | 6 crew-0.9.5/crew/MD5 | 31 +-- crew-0.9.5/crew/NEWS.md | 4 crew-0.9.5/crew/build/vignette.rds |binary crew-0.9.5/crew/inst/doc/groups.Rmd | 26 -- crew-0.9.5/crew/inst/doc/introduction.Rmd | 39 +--- crew-0.9.5/crew/inst/doc/plugins.R | 258 ----------------------------- crew-0.9.5/crew/inst/doc/plugins.Rmd | 36 +--- crew-0.9.5/crew/inst/doc/plugins.html | 11 - crew-0.9.5/crew/inst/doc/risks.Rmd | 8 crew-0.9.5/crew/tests/testthat.R | 4 crew-0.9.5/crew/vignettes/groups.Rmd | 26 -- crew-0.9.5/crew/vignettes/introduction.Rmd | 39 +--- crew-0.9.5/crew/vignettes/plugins.Rmd | 36 +--- crew-0.9.5/crew/vignettes/risks.Rmd | 8 18 files changed, 111 insertions(+), 421 deletions(-)
Title: Bayesian Dynamic Borrowing with Flexible Baseline Hazard
Function
Description: Allows Bayesian borrowing from a historical dataset for time-to-
event data. A flexible baseline hazard function is achieved via a piecewise
exponential likelihood with time varying split points and smoothing prior on the
historic baseline hazards. The method is described in Scott and Lewin (2024)
<doi:10.48550/arXiv.2401.06082>.
Author: Darren Scott [aut, cre],
Sophia Axillus [aut]
Maintainer: Darren Scott <darren.scott@astrazeneca.com>
Diff between BayesFBHborrow versions 1.0.1 dated 2024-02-27 and 2.0.1 dated 2024-06-24
BayesFBHborrow-1.0.1/BayesFBHborrow/man/plot_hist.Rd |only BayesFBHborrow-1.0.1/BayesFBHborrow/man/plot_matrix.Rd |only BayesFBHborrow-1.0.1/BayesFBHborrow/man/plot_trace.Rd |only BayesFBHborrow-2.0.1/BayesFBHborrow/DESCRIPTION | 8 BayesFBHborrow-2.0.1/BayesFBHborrow/MD5 | 52 - BayesFBHborrow-2.0.1/BayesFBHborrow/NAMESPACE | 3 BayesFBHborrow-2.0.1/BayesFBHborrow/R/GibbsMH.R | 361 ++++----- BayesFBHborrow-2.0.1/BayesFBHborrow/R/outputs.R | 334 +++++--- BayesFBHborrow-2.0.1/BayesFBHborrow/R/run_mcmc.R | 390 ++++------ BayesFBHborrow-2.0.1/BayesFBHborrow/R/utils.R | 153 +++ BayesFBHborrow-2.0.1/BayesFBHborrow/man/BayesFBHborrow.NoBorrow.Rd | 56 - BayesFBHborrow-2.0.1/BayesFBHborrow/man/BayesFBHborrow.Rd | 73 - BayesFBHborrow-2.0.1/BayesFBHborrow/man/BayesFBHborrow.WBorrow.Rd | 75 - BayesFBHborrow-2.0.1/BayesFBHborrow/man/GibbsMH.NoBorrow.Rd | 14 BayesFBHborrow-2.0.1/BayesFBHborrow/man/GibbsMH.Rd | 21 BayesFBHborrow-2.0.1/BayesFBHborrow/man/GibbsMH.WBorrow.Rd | 25 BayesFBHborrow-2.0.1/BayesFBHborrow/man/coef.BayesFBHborrow.Rd | 7 BayesFBHborrow-2.0.1/BayesFBHborrow/man/dot-plot_hist.Rd |only BayesFBHborrow-2.0.1/BayesFBHborrow/man/dot-plot_matrix.Rd |only BayesFBHborrow-2.0.1/BayesFBHborrow/man/dot-plot_trace.Rd |only BayesFBHborrow-2.0.1/BayesFBHborrow/man/dot-predictive_hazard.Rd |only BayesFBHborrow-2.0.1/BayesFBHborrow/man/dot-predictive_hazard_ratio.Rd |only BayesFBHborrow-2.0.1/BayesFBHborrow/man/dot-predictive_survival.Rd |only BayesFBHborrow-2.0.1/BayesFBHborrow/man/dot-set_hyperparameters.Rd |only BayesFBHborrow-2.0.1/BayesFBHborrow/man/dot-set_tuning_parameters.Rd |only BayesFBHborrow-2.0.1/BayesFBHborrow/man/dot-smooth_hazard.Rd |only BayesFBHborrow-2.0.1/BayesFBHborrow/man/dot-smooth_survival.Rd |only BayesFBHborrow-2.0.1/BayesFBHborrow/man/plot.BayesFBHborrow.Rd | 43 - BayesFBHborrow-2.0.1/BayesFBHborrow/man/summary.BayesFBHborrow.Rd | 7 BayesFBHborrow-2.0.1/BayesFBHborrow/tests/testthat/test-GibbsMH_NoBorrow.R | 13 BayesFBHborrow-2.0.1/BayesFBHborrow/tests/testthat/test-GibbsMH_WBorrow.R | 34 BayesFBHborrow-2.0.1/BayesFBHborrow/tests/testthat/test-output.R |only BayesFBHborrow-2.0.1/BayesFBHborrow/tests/testthat/test-run_mcmc.R | 151 +-- BayesFBHborrow-2.0.1/BayesFBHborrow/tests/testthat/test-utils.R | 166 ++++ 34 files changed, 1129 insertions(+), 857 deletions(-)
More information about BayesFBHborrow at CRAN
Permanent link
Title: Retrieving, Organizing, and Analyzing Estuary Monitoring Data
Description: Tools for retrieving, organizing, and analyzing environmental
data from the System Wide Monitoring Program of the National Estuarine
Research Reserve System <https://cdmo.baruch.sc.edu/>. These tools
address common challenges associated with continuous time series data
for environmental decision making.
Author: Marcus W. Beck [aut, cre],
Kimberly Cressman [ctb]
Maintainer: Marcus W. Beck <mbeck@tbep.org>
Diff between SWMPr versions 2.5.0 dated 2023-07-16 and 2.5.1 dated 2024-06-24
SWMPr-2.5.0/SWMPr/data/stat_locs.RData |only SWMPr-2.5.0/SWMPr/inst/stat_locs.csv |only SWMPr-2.5.1/SWMPr/DESCRIPTION | 8 ++++---- SWMPr-2.5.1/SWMPr/MD5 | 19 +++++++++---------- SWMPr-2.5.1/SWMPr/NEWS.md | 4 ++++ SWMPr-2.5.1/SWMPr/R/swmpr_misc.R | 2 +- SWMPr-2.5.1/SWMPr/build/vignette.rds |binary SWMPr-2.5.1/SWMPr/data/stat_locs.rda |only SWMPr-2.5.1/SWMPr/inst/doc/Overview.R | 2 +- SWMPr-2.5.1/SWMPr/inst/doc/Overview.html | 2 +- SWMPr-2.5.1/SWMPr/man/stat_locs.Rd | 2 +- SWMPr-2.5.1/SWMPr/tests/testthat.R | 24 ++++++++++++------------ 12 files changed, 33 insertions(+), 30 deletions(-)
Title: Tools for Semantic Vector Spaces
Description: Various tools for semantic vector spaces, such as
correspondence analysis (simple, multiple and discriminant), latent
semantic analysis, probabilistic latent semantic analysis, non-negative
matrix factorization, latent class analysis, EM clustering, logratio
analysis and log-multiplicative (association) analysis. Furthermore,
there are specialized distance measures, plotting functions and some helper
functions.
Author: Koen Plevoets [aut, cre]
Maintainer: Koen Plevoets <koen.plevoets@ugent.be>
Diff between svs versions 3.0.0 dated 2020-11-09 and 3.1.1 dated 2024-06-24
DESCRIPTION | 21 MD5 | 75 +- NAMESPACE | 8 R/svs.r | 1363 +++++++++++++++++++++++++++------------------ inst/CITATION | 14 man/Ctxt_Dut.txt.Rd | 8 man/Ctxt_Eng.txt.Rd | 8 man/Ctxt_Fra.txt.Rd | 8 man/InvT_Eng.txt.Rd | 16 man/InvT_Fra.txt.Rd | 16 man/MI.Rd | 4 man/SndT_Eng.txt.Rd | 16 man/SndT_Fra.txt.Rd | 16 man/cd_plot.Rd | 6 man/centers_ca.Rd | 6 man/dat2ddc.Rd |only man/dat2ind.Rd |only man/dist_chisquare.Rd | 4 man/dist_cosine.Rd | 4 man/dist_wrt.Rd | 4 man/dist_wrt_centers.Rd | 6 man/fast_E_M.Rd | 4 man/fast_dca.Rd | 8 man/fast_lca.Rd | 4 man/fast_lma.Rd | 4 man/fast_lra.Rd | 4 man/fast_lsa.Rd | 4 man/fast_mca.Rd | 4 man/fast_nmf.Rd | 4 man/fast_psa.Rd | 4 man/fast_sca.Rd | 4 man/layout4bipartite.Rd |only man/log_or_0.Rd | 4 man/pc_plot.Rd | 4 man/pmi.Rd | 4 man/rep4dat.Rd |only man/svs-package.Rd | 107 ++- man/tab2ind.Rd | 6 man/vec2ddc.Rd |only man/vec2ind.Rd | 3 man/weighting_functions.Rd | 32 - 41 files changed, 1067 insertions(+), 740 deletions(-)
Title: Product-Limit Estimation for Censored Event History Analysis
Description: Fast and user friendly implementation of nonparametric estimators
for censored event history (survival) analysis. Kaplan-Meier and
Aalen-Johansen method.
Author: Thomas A. Gerds
Maintainer: Thomas A. Gerds <tag@biostat.ku.dk>
Diff between prodlim versions 2023.08.28 dated 2023-08-28 and 2024.06.25 dated 2024-06-24
prodlim-2023.08.28/prodlim/R/eventsMethods.R |only prodlim-2023.08.28/prodlim/R/mean.prodlim.R |only prodlim-2023.08.28/prodlim/tests/testthat/cluster.R |only prodlim-2023.08.28/prodlim/tests/testthat/pseudo.R |only prodlim-2024.06.25/prodlim/DESCRIPTION | 9 +- prodlim-2024.06.25/prodlim/MD5 | 50 ++++++------ prodlim-2024.06.25/prodlim/NAMESPACE | 7 + prodlim-2024.06.25/prodlim/R/EventHistory.frame.R | 2 prodlim-2024.06.25/prodlim/R/Hist.R | 59 ++++++++++++--- prodlim-2024.06.25/prodlim/R/lines.prodlim.R | 1 prodlim-2024.06.25/prodlim/R/neighborhood.R | 4 - prodlim-2024.06.25/prodlim/R/plot.prodlim.R | 2 prodlim-2024.06.25/prodlim/R/predict.prodlim.R | 2 prodlim-2024.06.25/prodlim/R/print.quantile.prodlim.R | 26 +++--- prodlim-2024.06.25/prodlim/R/prodlim-package.R | 5 - prodlim-2024.06.25/prodlim/R/prodlim.R | 8 +- prodlim-2024.06.25/prodlim/R/quantile.prodlim.R | 2 prodlim-2024.06.25/prodlim/R/summary.prodlim.R | 3 prodlim-2024.06.25/prodlim/man/EventHistory.frame.Rd | 2 prodlim-2024.06.25/prodlim/man/Hist.Rd | 6 - prodlim-2024.06.25/prodlim/man/head.Hist.Rd |only prodlim-2024.06.25/prodlim/man/is.na.Hist.Rd |only prodlim-2024.06.25/prodlim/man/neighborhood.Rd | 4 - prodlim-2024.06.25/prodlim/man/plot.prodlim.Rd | 4 - prodlim-2024.06.25/prodlim/man/prodlim-package.Rd | 1 prodlim-2024.06.25/prodlim/man/prodlim.Rd | 8 +- prodlim-2024.06.25/prodlim/man/str.Hist.Rd |only prodlim-2024.06.25/prodlim/man/sub-.Hist.Rd |only prodlim-2024.06.25/prodlim/man/subset.Hist.Rd |only prodlim-2024.06.25/prodlim/man/tail.Hist.Rd |only prodlim-2024.06.25/prodlim/tests/testthat/test-prodlim.R | 57 ++++++++++++++ 31 files changed, 184 insertions(+), 78 deletions(-)
Title: Scatter Plot After Residualizing Using 'fixest' Package
Description: Creates a scatter plot after residualizing using a set of covariates. The residuals are calculated using the 'fixest' package which allows very fast estimation that scales. Details of the (Yule-)Frisch-Waugh-Lovell theorem is given in Basu (2023) <doi:10.48550/arXiv.2307.00369>.
Author: Kyle Butts [aut, cre]
Maintainer: Kyle Butts <kbutts@uark.edu>
Diff between fwlplot versions 0.2.0 dated 2023-10-16 and 0.3.0 dated 2024-06-24
fwlplot-0.2.0/fwlplot/man/figures/README-unnamed-chunk-2-1.png |only fwlplot-0.2.0/fwlplot/man/figures/README-unnamed-chunk-2-2.png |only fwlplot-0.2.0/fwlplot/man/figures/README-unnamed-chunk-3-2.png |only fwlplot-0.2.0/fwlplot/man/figures/README-unnamed-chunk-3-3.png |only fwlplot-0.2.0/fwlplot/man/figures/README-unnamed-chunk-3-4.png |only fwlplot-0.2.0/fwlplot/man/figures/README-unnamed-chunk-3-5.png |only fwlplot-0.2.0/fwlplot/man/figures/README-unnamed-chunk-3-6.png |only fwlplot-0.2.0/fwlplot/man/figures/README-unnamed-chunk-3-7.png |only fwlplot-0.2.0/fwlplot/man/figures/README-unnamed-chunk-6-1.png |only fwlplot-0.3.0/fwlplot/DESCRIPTION | 17 fwlplot-0.3.0/fwlplot/MD5 | 32 - fwlplot-0.3.0/fwlplot/NEWS.md |only fwlplot-0.3.0/fwlplot/R/fwl_plot.R | 187 +++------- fwlplot-0.3.0/fwlplot/README.md | 81 ++-- fwlplot-0.3.0/fwlplot/man/figures/README-unnamed-chunk-10-1.png |only fwlplot-0.3.0/fwlplot/man/figures/README-unnamed-chunk-11-1.png |only fwlplot-0.3.0/fwlplot/man/figures/README-unnamed-chunk-3-1.png |binary fwlplot-0.3.0/fwlplot/man/figures/README-unnamed-chunk-4-1.png |binary fwlplot-0.3.0/fwlplot/man/figures/README-unnamed-chunk-5-1.png |binary fwlplot-0.3.0/fwlplot/man/figures/README-unnamed-chunk-7-1.png |binary fwlplot-0.3.0/fwlplot/man/figures/README-unnamed-chunk-8-1.png |binary fwlplot-0.3.0/fwlplot/man/figures/README-unnamed-chunk-9-1.png |binary fwlplot-0.3.0/fwlplot/man/fwl_plot.Rd | 10 23 files changed, 143 insertions(+), 184 deletions(-)
Title: Including Known Interactions in Species Distribution Models
Description: A collection of tools to fit and work with trophic Species Distribution Models. Trophic Species Distribution Models combine knowledge of trophic interactions with Bayesian structural equation models that model each species as a function of its prey (or predators) and environmental conditions. It exploits the topological ordering of the known trophic interaction network to predict species distribution in space and/or time, where the prey (or predator) distribution is unavailable. The method implemented by the package is described in Poggiato, Andréoletti, Pollock and Thuiller (2022) <doi:10.22541/au.166853394.45823739/v1>.
Author: Giovanni Poggiato [aut, cre, cph],
Jeremy Andreoletti [aut]
Maintainer: Giovanni Poggiato <giov.poggiato@gmail.com>
Diff between webSDM versions 1.1-4 dated 2023-09-18 and 1.1-5 dated 2024-06-24
DESCRIPTION | 17 MD5 | 128 - NAMESPACE | 164 +- NEWS.md | 34 R/SDMfit.R | 480 +++---- R/SimulData.R | 96 - R/buildFormula.R | 196 +- R/coef.SDMfit.R | 298 ++-- R/coef.trophicSDMfit.R | 94 - R/computeVariableImportance.R | 120 - R/evaluateModelFit.R | 252 +-- R/global.R | 14 R/loo.trophicSDMfit.R | 62 R/plot.SDMfit.R | 126 - R/plot.trophicSDMfit.R | 118 - R/plotG.R | 72 - R/plotG_inferred.R | 158 +- R/predict.SDMfit.R | 248 +-- R/predict.trophicSDMfit.R | 668 ++++----- R/predictPotential.R | 220 +-- R/print.SDMfit.R | 58 R/print.trophicSDMfit.R | 58 R/summary.SDMfit.R | 80 - R/summary.trophicSDMfit.R | 90 - R/trophicSDM.R | 518 +++---- R/trophicSDM_CV.R | 252 +-- R/webSDM-package.R | 12 build/partial.rdb |binary build/vignette.rds |binary inst/doc/Composite_variables.Rmd | 486 +++---- inst/doc/Composite_variables.html | 1268 +++++++++--------- inst/doc/Differences_with_SDMs.Rmd | 724 +++++----- inst/doc/Differences_with_SDMs.html | 1562 +++++++++++----------- inst/doc/Introduction.Rmd | 1128 ++++++++-------- inst/doc/Introduction.html | 2110 +++++++++++++++---------------- man/G.Rd | 44 man/SDMfit.Rd | 182 +- man/X.Rd | 44 man/Y.Rd | 44 man/buildFormula.Rd | 62 man/coef.SDMfit.Rd | 106 - man/coef.trophicSDMfit.Rd | 106 - man/computeVariableImportance.Rd | 82 - man/evaluateModelFit.Rd | 130 - man/figures/logo_webSDM.svg | 826 ++++++------ man/global.Rd | 16 man/loo.trophicSDMfit.Rd | 64 man/plot.SDMfit.Rd | 76 - man/plot.trophicSDMfit.Rd | 78 - man/plotG.Rd | 66 man/plotG_inferred.Rd | 70 - man/predict.SDMfit.Rd | 94 - man/predict.trophicSDMfit.Rd | 150 +- man/print.SDMfit.Rd | 66 man/print.trophicSDMfit.Rd | 64 man/summary.SDMfit.Rd | 66 man/summary.trophicSDMfit.Rd | 66 man/trophicSDM.Rd | 308 ++-- man/trophicSDM_CV.Rd | 158 +- man/webSDM-package.Rd | 4 vignettes/Composite_variables.Rmd | 486 +++---- vignettes/Composite_variables.Rmd.orig | 284 ++-- vignettes/Differences_with_SDMs.Rmd | 724 +++++----- vignettes/Differences_with_SDMs.Rmd.orig | 638 ++++----- vignettes/Introduction.Rmd | 1128 ++++++++-------- 65 files changed, 9070 insertions(+), 9073 deletions(-)
Title: Geometric Morphometric Analyses of 2D and 3D Landmark Data
Description: Read, manipulate, and digitize landmark data, generate shape
variables via Procrustes analysis for points, curves and surfaces, perform
shape analyses, and provide graphical depictions of shapes and patterns of
shape variation.
Author: Dean Adams [aut, cre],
Michael Collyer [aut],
Antigoni Kaliontzopoulou [aut],
Erica Baken [aut]
Maintainer: Dean Adams <dcadams@iastate.edu>
Diff between geomorph versions 4.0.7 dated 2024-03-05 and 4.0.8 dated 2024-06-24
DESCRIPTION | 11 ++-- MD5 | 84 +++++++++++++++++++------------------- NEWS.md | 16 +++++++ R/bilat.symmetry.r | 18 ++------ R/define.links.r | 6 ++ R/geomorph.support.code.r | 6 ++ R/geomorph.utils.r | 29 +++++-------- R/gm.measurement.error.R | 12 ++--- R/gm.prcomp.R | 6 +- R/gridPar.r | 10 ++-- R/integration.Vrel.r | 21 +++++++++ R/integration.test.r | 8 +-- R/make_ggplot.r | 4 - R/morphol.disparity.r | 13 +++-- R/phylo.integration.r | 8 +-- R/plotAllometry.r | 6 +- R/plotRefToTarget.r | 3 - R/plotspec.r | 8 +-- R/procD.lm.r | 12 ++--- R/shape.predictor.r | 2 R/shared.support.code.R | 75 +++++++++++++++++++++++++-------- R/two.b.pls.r | 4 - README.md | 9 ---- build/vignette.rds |binary inst/CITATION | 4 - inst/doc/geomorph.digitize3D.html | 4 - man/bilat.symmetry.Rd | 6 -- man/define.links.Rd | 6 ++ man/gm.measurement.error.Rd | 12 ++--- man/gm.prcomp.Rd | 6 +- man/gridPar.Rd | 10 ++-- man/integration.test.Rd | 8 +-- man/make_ggplot.Rd | 2 man/morphol.disparity.Rd | 2 man/phylo.integration.Rd | 8 +-- man/plot.gm.prcomp.Rd | 5 -- man/plotAllometry.Rd | 6 +- man/plotRefToTarget.Rd | 3 - man/plotspec.Rd | 8 +-- man/procD.lm.Rd | 12 ++--- man/shape.predictor.Rd | 2 man/two.b.pls.Rd | 4 - tests |only 43 files changed, 275 insertions(+), 204 deletions(-)
Title: Alerts from Public Health Surveillance Data
Description: Helps create alerts and determine trends by using various methods to analyze public health surveillance data. The primary analysis method is based upon a published analytics strategy by Benedetti (2019) <doi:10.5588/pha.19.0002>.
Author: Beatriz Valcarcel Salamanca [aut],
Chi Zhang [aut] ,
Richard Aubrey White [aut, cre]
,
CSIDS [cph]
Maintainer: Richard Aubrey White <hello@rwhite.no>
Diff between csalert versions 2023.6.17 dated 2023-06-15 and 2024.6.24 dated 2024-06-24
DESCRIPTION | 14 MD5 | 34 + NAMESPACE | 7 NEWS.md | 8 R/prediction_interval.R | 28 - R/row_functions.R |only R/short_term_trend.R | 125 ++--- R/short_term_trend_sts_v1.R |only R/signal_detection_hlm.R |only R/simulation_data_baseline.R |only build/vignette.rds |binary inst/doc/short_term_trend.R | 88 +--- inst/doc/short_term_trend.Rmd | 100 +--- inst/doc/short_term_trend.html | 709 +++++++++++++++------------------ man/add_holiday_effect.Rd |only man/prediction_interval.Rd |only man/prediction_interval.glm.Rd |only man/short_term_trend.Rd | 21 man/short_term_trend_sts_v1.Rd |only man/signal_detection_hlm.Rd |only man/simulate_baseline_data.Rd |only man/simulate_seasonal_outbreak_data.Rd |only man/simulate_spike_outbreak_data.Rd |only vignettes/short_term_trend.Rmd | 100 +--- 24 files changed, 535 insertions(+), 699 deletions(-)
Title: Local Regression, Likelihood and Density Estimation
Description: Local regression, likelihood and density estimation methods as described in the 1999 book by Loader.
Author: Catherine Loader [aut],
Jiayang Sun [ctb],
Lucent Technologies [cph],
Andy Liaw [cre]
Maintainer: Andy Liaw <andy_liaw@merck.com>
Diff between locfit versions 1.5-9.9 dated 2024-03-01 and 1.5-9.10 dated 2024-06-24
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/S_enter.c | 6 ++++++ 3 files changed, 12 insertions(+), 6 deletions(-)
Title: Combination Matrix Axis for 'ggplot2' to Create 'UpSet' Plots
Description: Replace the standard x-axis in 'ggplots' with a combination matrix
to visualize complex set overlaps. 'UpSet' has introduced a new way to visualize
the overlap of sets as an alternative to Venn diagrams.
This package provides a simple way to produce such plots using 'ggplot2'.
In addition it can convert any categorical axis into a combination
matrix axis.
Author: Constantin Ahlmann-Eltze [aut, cre]
Maintainer: Constantin Ahlmann-Eltze <artjom31415@googlemail.com>
Diff between ggupset versions 0.3.0 dated 2020-05-05 and 0.4.0 dated 2024-06-24
DESCRIPTION | 8 MD5 | 51 ++-- NEWS.md | 11 + R/axis_combmatrix.R | 142 +++++++++---- R/scale_upset.R | 4 R/theme_combmatrix.R | 6 R/zzz.R |only README.md | 317 +++++++++++++++++++++--------- man/axis_combmatrix.Rd | 49 ++++ man/df_complex_conditions.Rd | 6 man/figures/README-unnamed-chunk-10-1.png |binary man/figures/README-unnamed-chunk-11-1.png |binary man/figures/README-unnamed-chunk-12-1.png |binary man/figures/README-unnamed-chunk-13-1.png |binary man/figures/README-unnamed-chunk-14-1.png |binary man/figures/README-unnamed-chunk-14-2.png |only man/figures/README-unnamed-chunk-15-1.png |binary man/figures/README-unnamed-chunk-16-1.png |only man/figures/README-unnamed-chunk-16-2.png |only man/figures/README-unnamed-chunk-17-1.png |only man/figures/README-unnamed-chunk-18-1.png |only man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |only man/figures/README-unnamed-chunk-7-1.png |binary man/figures/README-unnamed-chunk-9-1.png |binary man/figures/README-violinexample-1.png |binary man/gene_pathway_membership.Rd | 6 man/theme_combmatrix.Rd | 4 man/tidy_movies.Rd | 6 tests/testthat/test-axis_combmatrix.R | 141 +++++++------ 30 files changed, 522 insertions(+), 229 deletions(-)
Title: Semiparametric Latent Class Analysis of Recurrent Events
Description: Efficient R package for latent class analysis of recurrent events, based on the semiparametric multiplicative intensity model by Zhao et al. (2022) <doi:10.1111/rssb.12499>. SLCARE returns estimates for non-functional model parameters along with the associated variance estimates and p-values. Visualization tools are provided to depict the estimated functional model parameters and related functional quantities of interest. SLCARE also delivers a model checking plot to help assess the adequacy of the fitted model.
Author: Qi Yu [aut, cre],
Limin Peng [aut]
Maintainer: Qi Yu <qi.yu2@emory.edu>
Diff between SLCARE versions 1.1.0 dated 2024-01-14 and 1.2.0 dated 2024-06-24
DESCRIPTION | 6 +++--- MD5 | 26 ++++++++++++++------------ NAMESPACE | 1 + NEWS.md | 14 +++++++++++++- R/SLCARE-package.R | 1 + R/SLCARE.R | 27 +++++++++++++-------------- R/SLCARE_fit.R | 26 +++++++++++++------------- R/data.R | 42 ++++++++++++++++++++++++++++++++++++++++++ R/plot.R | 12 +++++++++--- R/summary.R | 8 ++++++-- data/colorectal.rda |only inst/examples/SLCARE.R | 2 +- man/SLCARE.Rd | 29 ++++++++++++++--------------- man/colorectal.Rd |only man/print.SLCARE.Rd | 7 +------ 15 files changed, 131 insertions(+), 70 deletions(-)
Title: ROBustness in Network
Description: Assesses the robustness of the community structure of a network found by one or more community detection algorithm to give indications about their reliability. It detects if the community structure found by a set of algorithms is statistically significant and compares the different selected detection algorithms on the same network. robin helps to choose among different community detection algorithms the one that better fits the network of interest. Reference in Policastro V., Righelli D., Carissimo A., Cutillo L., De Feis I. (2021) <https://journal.r-project.org/archive/2021/RJ-2021-040/index.html>.
Author: Valeria Policastro [aut, cre],
Dario Righelli [aut],
Luisa Cutillo [aut],
Italia De Feis [aut],
Annamaria Carissimo [aut]
Maintainer: Valeria Policastro <valeria.policastro@gmail.com>
Diff between robin versions 1.1.2 dated 2024-01-31 and 1.2.0 dated 2024-06-24
robin-1.1.2/robin/man/plotRobin.Rd |only robin-1.2.0/robin/DESCRIPTION | 8 robin-1.2.0/robin/MD5 | 56 - robin-1.2.0/robin/NAMESPACE | 6 robin-1.2.0/robin/R/ROBIN.R | 916 ++++++++--------------- robin-1.2.0/robin/R/ROBINFast.R | 370 +++++++-- robin-1.2.0/robin/R/ROBINWeighted.R |only robin-1.2.0/robin/R/ROBIN_external_function.R |only robin-1.2.0/robin/R/ROBIN_plots.R |only robin-1.2.0/robin/README.md | 69 + robin-1.2.0/robin/inst/NEWS | 8 robin-1.2.0/robin/inst/doc/robin.R | 25 robin-1.2.0/robin/inst/doc/robin.Rmd | 25 robin-1.2.0/robin/inst/doc/robin.html | 157 +-- robin-1.2.0/robin/man/membershipCommunities.Rd | 55 - robin-1.2.0/robin/man/methodCommunity.Rd | 57 - robin-1.2.0/robin/man/plot.robin.Rd |only robin-1.2.0/robin/man/plotComm.Rd | 2 robin-1.2.0/robin/man/plotGraph.Rd | 2 robin-1.2.0/robin/man/random.Rd | 8 robin-1.2.0/robin/man/randomNoW.Rd |only robin-1.2.0/robin/man/randomWeight.Rd |only robin-1.2.0/robin/man/rewireCompl.Rd | 35 robin-1.2.0/robin/man/robinAUC.Rd | 17 robin-1.2.0/robin/man/robinCompare.Rd | 67 - robin-1.2.0/robin/man/robinCompareFast.Rd | 56 - robin-1.2.0/robin/man/robinCompareFastWeight.Rd |only robin-1.2.0/robin/man/robinCompareNoParallel.Rd |only robin-1.2.0/robin/man/robinFDATest.Rd | 29 robin-1.2.0/robin/man/robinGPTest.Rd | 15 robin-1.2.0/robin/man/robinRobust.Rd | 55 - robin-1.2.0/robin/man/robinRobustFast.Rd |only robin-1.2.0/robin/man/robinRobustFastWeighted.Rd |only robin-1.2.0/robin/man/robinRobustNoParallel.Rd |only robin-1.2.0/robin/vignettes/robin.Rmd | 25 35 files changed, 936 insertions(+), 1127 deletions(-)
Title: Send Email Messages
Description: A light, simple tool for sending emails with minimal dependencies.
Author: Andrew B. Collier [aut, cre, cph],
Matt Dennis [ctb],
Antoine Bichat [ctb] ,
Daniel Fahey [ctb],
Johann R. Kleinbub [ctb],
Panagiotis Moulos [ctb],
Swechhya Bista [ctb],
Colin Fay [ctb]
Maintainer: Andrew B. Collier <andrew.b.collier@gmail.com>
Diff between emayili versions 0.8.0 dated 2024-04-23 and 0.9.1 dated 2024-06-24
DESCRIPTION | 6 +++--- MD5 | 20 +++++++++++--------- NAMESPACE | 2 ++ R/envelope.R | 3 +++ R/header-mail.R | 36 +++++++++++++++++++++++++++++++++++- R/server.R | 9 ++++++--- R/utils.R | 27 ++++++++++++++++++++++++--- man/envelope.Rd | 3 +++ man/id.Rd |only man/message_id.Rd |only man/response.Rd | 6 ++++++ man/server.Rd | 9 ++++++--- 12 files changed, 99 insertions(+), 22 deletions(-)
Title: Provide the 'x13ashtml' Seasonal Adjustment Binary
Description: The US Census Bureau provides a seasonal adjustment program now
called 'X-13ARIMA-SEATS' building on both earlier programs called X-11 and
X-12 as well as the SEATS program by the Bank of Spain. The US Census Bureau
offers both source and binary versions -- which this package integrates for
use by other R packages.
Author: Dirk Eddelbuettel [aut, cre] ,
Christoph Sax [aut] ,
Kirill Mueller [ctb] ,
Jeroen Ooms [ctb] ,
Michael Antonov [ctb]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between x13binary versions 1.1.60 dated 2024-01-22 and 1.1.61 dated 2024-06-24
ChangeLog | 16 +++++++++++++--- DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/checkX13binary.R | 3 ++- cleanup | 2 ++ src/Makefile | 2 +- src/Makefile.win | 2 +- 7 files changed, 29 insertions(+), 16 deletions(-)
Title: Finds the Geometrical Archetypal Analysis of a Data Frame
Description: Performs Geometrical Archetypal Analysis after creating Grid Archetypes
which are the Cartesian Product of all minimum, maximum variable values. Since the archetypes
are fixed now, we have the ability to compute the convex composition coefficients for all
our available data points much faster by using the half part of Principal Convex Hull Archetypal method.
Additionally we can decide to keep as archetypes the closer to the Grid Archetypes ones. Finally
the number of archetypes is always 2 to the power of the dimension of our data points
if we consider them as a vector space.
Cutler, A., Breiman, L. (1994) <doi:10.1080/00401706.1994.10485840>.
Morup, M., Hansen, LK. (2012) <doi:10.1016/j.neucom.2011.06.033>.
Christopoulos, DT. (2024) <doi:10.13140/RG.2.2.14030.88642>.
Author: Demetris Christopoulos [aut, cre, cph],
David Midgley [ctb, cph],
Sunil Venaik [ctb],
INSEAD Hoffmann Institute France [fnd],
The University of Queensland Australia [fnd]
Maintainer: Demetris Christopoulos <dchristop@econ.uoa.gr>
Diff between GeomArchetypal versions 1.0.1 dated 2024-06-01 and 1.0.2 dated 2024-06-24
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ README.md |only build/partial.rdb |binary build/vignette.rds |binary data/gallupGPS6.RData |binary man/print.BLB_archetypal.Rd | 3 +++ man/summary.BLB_archetypal.Rd | 3 +++ 8 files changed, 17 insertions(+), 10 deletions(-)
More information about GeomArchetypal at CRAN
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