Title: Predictors of Resilience to a Stressor in a Single-Arm Study
Description: Studies of resilience in older adults employ a single-arm design where everyone experiences the stressor. The simplistic approach of regressing change versus baseline yields biased estimates due to regression-to-the-mean. This package provides a method to correct the bias. It also allows covariates to be included. The method implemented in the package is described in Varadhan, R., Zhu, J., and Bandeen-Roche, K (2023), Biostatistics (To appear).
Author: Ravi Varadhan [aut, cre],
Jiafeng Zhu [ctb]
Maintainer: Ravi Varadhan <ravi.varadhan@jhu.edu>
Diff between resilience versions 2023.1.1 dated 2023-08-22 and 2024.1.1 dated 2024-07-06
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/pre-post-regression.R | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Causal Inference with Spatio-Temporal Data
Description: Spatio-temporal causal inference based on point process data.
You provide the raw data of locations and timings of treatment and
outcome events, specify counterfactual scenarios, and the package
estimates causal effects over specified spatial and temporal windows.
See Papadogeorgou, et al. (2022) <doi:10.1111/rssb.12548>.
Author: Mitsuru Mukaigawara [cre, aut]
,
Lingxiao Zhou [aut],
Georgia Papadogeorgou [aut] ,
Jason Lyall [aut] ,
Kosuke Imai [aut]
Maintainer: Mitsuru Mukaigawara <mitsuru_mukaigawara@g.harvard.edu>
Diff between geocausal versions 0.3.0 dated 2024-03-25 and 0.3.1 dated 2024-07-06
DESCRIPTION | 15 +++-- MD5 | 72 +++++++++++++++---------- NAMESPACE | 18 ++++++ NEWS.md | 21 ++++--- R/get_base_dens.R | 11 --- R/get_cate.R |only R/get_cf_dens.R | 2 R/get_cf_sum_log_intens.R | 18 +++--- R/get_dist_focus.R | 130 +++++++++++++++++++++------------------------- R/get_distexp.R | 4 - R/get_em_vec.R |only R/get_est.R | 21 ++++--- R/get_obs_dens.R | 31 ---------- R/get_power_dens.R | 24 -------- R/get_var_bound.R | 56 ++++++++++++++++--- R/get_weighted_surf.R | 11 +++ R/imls_to_arr.R |only R/pixel_count_ppp.R |only R/plot.cate.R |only R/plot.est.R | 4 - R/plot.weights.R |only R/sim_cf_dens.R | 41 -------------- R/sim_power_dens.R | 29 ---------- R/smooth_ppp.R | 21 ------- R/summary.cate.R |only README.md | 6 +- man/get_base_dens.Rd | 7 -- man/get_cate.Rd |only man/get_dist_focus.Rd | 22 ++----- man/get_em_vec.Rd |only man/get_est.Rd | 5 + man/get_obs_dens.Rd | 31 ---------- man/get_power_dens.Rd | 22 ------- man/get_var_bound.Rd | 12 +++- man/get_weighted_surf.Rd | 3 + man/imls_to_arr.Rd |only man/pixel_count_ppp.Rd |only man/plot.cate.Rd |only man/plot.est.Rd | 2 man/plot.weights.Rd |only man/sim_cf_dens.Rd | 39 ------------- man/sim_power_dens.Rd | 25 -------- man/smooth_ppp.Rd | 19 ------ man/summary.cate.Rd |only 44 files changed, 265 insertions(+), 457 deletions(-)
Title: Make Static HTML Documentation for a Package
Description: Generate an attractive and useful website from a source
package. 'pkgdown' converts your documentation, vignettes, 'README',
and more to 'HTML' making it easy to share information about your
package online.
Author: Hadley Wickham [aut, cre] ,
Jay Hesselberth [aut] ,
Maelle Salmon [aut] ,
Olivier Roy [aut],
Salim Brueggemann [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between pkgdown versions 2.0.9 dated 2024-04-18 and 2.1.0 dated 2024-07-06
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Title: Correcting Misclassified Binary Outcomes in Association Studies
Description: Use frequentist and Bayesian methods to estimate parameters from a
binary outcome misclassification model. These methods correct for the problem
of "label switching" by assuming that the sum of outcome sensitivity and
specificity is at least 1. A description of the analysis methods is
available in Hochstedler and Wells (2023) <doi:10.48550/arXiv.2303.10215>.
Author: Kimberly Hochstedler Webb [aut, cre]
Maintainer: Kimberly Hochstedler Webb <kah343@cornell.edu>
Diff between COMBO versions 1.0.0 dated 2023-04-19 and 1.1.0 dated 2024-07-06
DESCRIPTION | 41 +- MD5 | 80 ++-- R/COMBO_EM.R | 15 R/COMBO_EM_2stage.R | 174 +++++----- R/COMBO_EM_data.R |only R/COMBO_MCMC.R | 16 R/COMBO_MCMC_2stage.R | 205 ++++++----- R/COMBO_data_2stage.R | 83 ++-- R/LSAC_data.R |only R/check_and_fix_chains.R | 73 ++-- R/check_and_fix_chains_2stage.R | 12 R/label_switch_2stage.R | 4 R/misclassification_prob2.R | 53 +-- R/model_picker_2stage.R | 48 +- R/naive_model_picker_2stage.R | 24 - R/pistar_by_chain_2stage.R |only R/pistar_compute_for_chains_2stage.R |only R/pitilde_compute_for_chains.R | 6 R/sum_every_n.R | 2 R/sum_every_n1.R | 2 README.md | 10 build/vignette.rds |binary data |only inst/doc/COMBO_notation_guide.R | 9 inst/doc/COMBO_notation_guide.Rmd | 10 inst/doc/COMBO_notation_guide.html | 344 +++----------------- inst/doc/COMBO_notation_guide_2stage.R | 57 +-- inst/doc/COMBO_notation_guide_2stage.Rmd | 58 +-- inst/doc/COMBO_notation_guide_2stage.html | 513 ++++++++---------------------- man/COMBO_EM_2stage.Rd | 84 ++-- man/COMBO_EM_data.Rd |only man/COMBO_MCMC.Rd | 12 man/COMBO_MCMC_2stage.Rd | 189 +++++------ man/COMBO_data_2stage.Rd | 68 +-- man/LSAC_data.Rd |only man/misclassification_prob2.Rd | 40 +- man/pistar_by_chain_2stage.Rd |only man/pistar_compute_for_chains_2stage.Rd |only man/sum_every_n.Rd | 2 man/sum_every_n1.Rd | 2 tests |only vignettes/COMBO_notation_guide.Rmd | 10 vignettes/COMBO_notation_guide_2stage.Rmd | 58 +-- vignettes/file1ad831ec13cf.html |only vignettes/file1ad85f2b2c23.html |only vignettes/file24f423d615f.html |only vignettes/file6aa416545d3c.html |only 47 files changed, 973 insertions(+), 1331 deletions(-)
Title: Easily Play Notification Sounds on any Platform
Description: The main function of this package is beep(), with the purpose to
make it easy to play notification sounds on whatever platform you are on.
It is intended to be useful, for example, if you are running a long analysis
in the background and want to know when it is ready.
Author: Rasmus Baath [aut, cre],
Amanda Dobbyn [ctb]
Maintainer: Rasmus Baath <rasmus.baath@gmail.com>
Diff between beepr versions 1.3 dated 2018-06-04 and 2.0 dated 2024-07-06
DESCRIPTION | 16 +++++++---- MD5 | 28 ++++++++++---------- NAMESPACE | 1 NEWS | 10 +++++++ R/beepr-package.R | 17 +++++------- R/beepr.R | 58 +++++++++++++++++++++--------------------- README.md | 4 -- inst/sounds/ready_master.wav |binary inst/sounds/shotgun.wav |binary inst/sounds/sword.wav |binary inst/sounds/work_complete.wav |binary man/beep.Rd | 6 ++-- man/beep_on_error.Rd | 11 +++++-- man/beepr.Rd | 14 +++++++--- tests |only 15 files changed, 96 insertions(+), 69 deletions(-)
Title: Paleontological and Phylogenetic Analyses of Evolution
Description: Provides tools for transforming, a posteriori time-scaling, and
modifying phylogenies containing extinct (i.e. fossil) lineages. In particular,
most users are interested in the functions timePaleoPhy, bin_timePaleoPhy,
cal3TimePaleoPhy and bin_cal3TimePaleoPhy, which date cladograms of
fossil taxa using stratigraphic data. This package also contains a large number
of likelihood functions for estimating sampling and diversification rates from
different types of data available from the fossil record (e.g. range data,
occurrence data, etc). paleotree users can also simulate diversification and
sampling in the fossil record using the function simFossilRecord, which is a
detailed simulator for branching birth-death-sampling processes composed of
discrete taxonomic units arranged in ancestor-descendant relationships. Users
can use simFossilRecord to simulate diversification in incompletely sampled
fossil records, under various models of morphological differentiation (i.e.
the various pattern [...truncated...]
Author: David W. Bapst, Peter J. Wagner
Maintainer: David W. Bapst <dwbapst@gmail.com>
Diff between paleotree versions 3.4.5 dated 2022-08-22 and 3.4.7 dated 2024-07-06
CHANGELOG | 5 ++ DESCRIPTION | 10 ++--- MD5 | 78 ++++++++++++++++++++--------------------- R/DiversityCurves.R | 4 +- R/RaiaCopesRule.R | 3 + R/SamplingConv.R | 20 ++++++---- R/branchClasses.R | 4 +- R/cal3TimePaleoPhy.R | 4 +- R/cladogeneticTraitCont.R | 1 R/degradeTree.R | 4 +- R/expandTaxonTree.R | 4 +- R/minCharChange.R | 2 - R/modifyTerminalBranches.R | 12 +++--- R/nodeDates2branchLengths.R | 5 +- R/paleotree-package.R | 5 +- R/plotTraitgram.R | 4 +- R/probAnc.R | 32 +++++++++++----- R/resolveTreeChar.R | 12 +++--- R/simFossilRecord.R | 2 - R/timeLadderTree.R | 2 - R/timePaleoPhy.R | 7 ++- R/twoWayEcologyCluster.R | 50 +++++++++++++++++--------- build/partial.rdb |binary inst/CITATION | 32 +++++++++++----- man/DiversityCurves.Rd | 2 - man/RaiaCopesRule.Rd | 3 + man/branchClasses.Rd | 2 - man/cal3TimePaleoPhy.Rd | 2 - man/cladogeneticTraitCont.Rd | 1 man/degradeTree.Rd | 2 - man/expandTaxonTree.Rd | 4 +- man/minCharChange.Rd | 2 - man/modifyTerminalBranches.Rd | 12 +++--- man/nodeDates2branchLengths.Rd | 5 +- man/plotTraitgram.Rd | 4 +- man/resolveTreeChar.Rd | 12 +++--- man/simFossilRecord.Rd | 2 - man/timeLadderTree.Rd | 2 - man/timePaleoPhy.Rd | 5 +- man/twoWayEcologyCluster.Rd | 6 +++ 40 files changed, 215 insertions(+), 153 deletions(-)
Title: Species Distribution Models as a Function of Biotic, Abiotic and
Movement Factors (BAM)
Description: Species Distribution Modeling (SDM) is a practical
methodology that aims to estimate the area of distribution of a
species. However, most of the work has focused on estimating static
expressions of the correlation between environmental variables. The
outputs of correlative species distribution models can be interpreted
as maps of the suitable environment for a species but not generally as
maps of its actual distribution. Soberón and Peterson (2005)
<doi:10.17161/bi.v2i0.4> presented the BAM scheme, a heuristic
framework that states that the occupied area of a species occurs on
sites that have been accessible through dispersal (M) and have both
favorable biotic (B) and abiotic conditions (A). The 'bamm' package
implements classes and functions to operate on each element of the BAM
and by using a cellular automata model where the occupied area of a
species at time t is estimated by the multiplication of three binary
matrices: one matrix represents movements (M), another abiotic - [...truncated...]
Author: Luis Osorio-Olvera [aut, cre] ,
Jorge Soberon [aut] ,
Rusby G. Contreras-Diaz [ctb]
Maintainer: Luis Osorio-Olvera <luismurao@gmail.com>
Diff between bamm versions 0.4.3 dated 2022-12-20 and 0.5.0 dated 2024-07-06
bamm-0.4.3/bamm/inst/extdata/predict_examples/D_amphiona_lupita_bin_lgm.tif.aux.xml |only bamm-0.4.3/bamm/inst/extdata/predict_examples/D_amphiona_lupita_bin_midh.tif.aux.xml |only bamm-0.4.3/bamm/man/dot-nonzero.Rd |only bamm-0.5.0/bamm/DESCRIPTION | 104 +-- bamm-0.5.0/bamm/MD5 | 87 +- bamm-0.5.0/bamm/NEWS.md | 11 bamm-0.5.0/bamm/R/RcppExports.R | 8 bamm-0.5.0/bamm/R/bam_classes.R | 26 bamm-0.5.0/bamm/R/bam_clusters.R | 4 bamm-0.5.0/bamm/R/bam_methods.R | 26 bamm-0.5.0/bamm/R/bam_sim.R | 8 bamm-0.5.0/bamm/R/bam_ssim.R | 8 bamm-0.5.0/bamm/R/community_sim.R | 4 bamm-0.5.0/bamm/R/csd_estimate.R | 2 bamm-0.5.0/bamm/R/csim2pam.R | 4 bamm-0.5.0/bamm/R/diversity_range_analysis.R | 23 bamm-0.5.0/bamm/R/eigen_bam.R | 23 bamm-0.5.0/bamm/R/models2pam.R | 32 bamm-0.5.0/bamm/R/null_dispersion_field_distribution.R | 45 - bamm-0.5.0/bamm/R/pam2bioindex.R | 46 + bamm-0.5.0/bamm/R/pam2richness.R | 5 bamm-0.5.0/bamm/R/permute_pam.R | 39 - bamm-0.5.0/bamm/R/sdm_sim.R | 1 bamm-0.5.0/bamm/R/sim2Animation.R | 10 bamm-0.5.0/bamm/README.md | 14 bamm-0.5.0/bamm/build/partial.rdb |binary bamm-0.5.0/bamm/build/vignette.rds |binary bamm-0.5.0/bamm/inst/REFERENCES.bib | 53 + bamm-0.5.0/bamm/inst/doc/bam.R | 2 bamm-0.5.0/bamm/inst/doc/bam.html | 337 +++++----- bamm-0.5.0/bamm/man/bam_sim.Rd | 8 bamm-0.5.0/bamm/man/bam_ssim.Rd | 8 bamm-0.5.0/bamm/man/bioindex-class.Rd | 11 bamm-0.5.0/bamm/man/bioindex_sparse-class.Rd | 11 bamm-0.5.0/bamm/man/csd_estimate.Rd | 2 bamm-0.5.0/bamm/man/diversity_range_analysis.Rd | 9 bamm-0.5.0/bamm/man/eigen_bam.Rd | 13 bamm-0.5.0/bamm/man/models2pam.Rd | 15 bamm-0.5.0/bamm/man/null_dispersion_field_distribution.Rd | 19 bamm-0.5.0/bamm/man/pam2bioindex.Rd | 7 bamm-0.5.0/bamm/man/pam2richness.Rd | 3 bamm-0.5.0/bamm/man/permute_pam.Rd | 21 bamm-0.5.0/bamm/man/predict.Rd | 12 bamm-0.5.0/bamm/man/sim2Animation.Rd | 10 bamm-0.5.0/bamm/src/RcppExports.cpp | 26 bamm-0.5.0/bamm/src/randomize_pams.cpp | 231 ++++++ 46 files changed, 938 insertions(+), 390 deletions(-)
Title: Sensitivity Analysis Using Weighted Rank Statistics
Description: Performs a sensitivity analysis using weighted rank tests in observational studies with I blocks of size J; see Rosenbaum (2024) <doi:10.1080/01621459.2023.2221402>. The package can perform adaptive inference in block designs; see Rosenbaum (2012) <doi:10.1093/biomet/ass032>. The main functions are wgtRank(), wgtRankCI() and wgtRanktt().
Author: Paul Rosenbaum [aut, cre]
Maintainer: Paul Rosenbaum <rosenbaum@wharton.upenn.edu>
Diff between weightedRank versions 0.2.5 dated 2023-05-08 and 0.3.7 dated 2024-07-06
DESCRIPTION | 10 ++++----- MD5 | 34 +++++++++++++++++++++------------ NAMESPACE | 3 +- R/ef2C.R | 14 +++++++++---- R/gwgtRank.R |only R/stepsolve.R |only R/wgtRank.R | 6 ++++- R/wgtRankC.R |only R/wgtRankCI.R |only build/partial.rdb |binary data/aHDLe.rda |only man/aBP.Rd | 3 +- man/aHDL.Rd | 17 +++++++--------- man/aHDLe.Rd |only man/dwgtRank.Rd | 28 +++++++++++++-------------- man/ef2C.Rd | 45 +++++++++++++++++++++++++++++++------------- man/gwgtRank.Rd |only man/stepSolve.Rd |only man/weightedRank-package.Rd | 6 +++-- man/wgtRank.Rd | 12 +++++------ man/wgtRankC.Rd |only man/wgtRankCI.Rd |only man/wgtRanktt.Rd | 8 +++---- 23 files changed, 114 insertions(+), 72 deletions(-)
Title: Restricted Statistical Estimation and Inference for Linear
Models
Description: Allow for easy-to-use testing or evaluating of linear equality and inequality restrictions about parameters and effects in (generalized) linear statistical models.
Author: Leonard Vanbrabant [aut, cre],
Rebecca Kuiper [aut],
Yves Rosseel [ctb],
Aleksandra Dacko [ctb]
Maintainer: Leonard Vanbrabant <info@restriktor.org>
Diff between restriktor versions 0.5-60 dated 2024-05-24 and 0.5-80 dated 2024-07-06
restriktor-0.5-60/restriktor/R/goric_anova_benchmarks.R |only restriktor-0.5-60/restriktor/man/conTestC.Rd |only restriktor-0.5-60/restriktor/man/conTestLRT.Rd |only restriktor-0.5-60/restriktor/man/conTestScore.Rd |only restriktor-0.5-60/restriktor/man/conTestWald.Rd |only restriktor-0.5-60/restriktor/tests |only restriktor-0.5-80/restriktor/DESCRIPTION | 8 restriktor-0.5-80/restriktor/MD5 | 165 restriktor-0.5-80/restriktor/NAMESPACE | 342 restriktor-0.5-80/restriktor/R/Gaussian_Elimination.R | 114 restriktor-0.5-80/restriktor/R/compute_chiBarSquare_weights.R | 450 - restriktor-0.5-80/restriktor/R/conGLM.R | 752 +- restriktor-0.5-80/restriktor/R/conGLM_fit.R | 490 - restriktor-0.5-80/restriktor/R/conLM.R | 752 +- restriktor-0.5-80/restriktor/R/conMLM.R | 730 +- restriktor-0.5-80/restriktor/R/conRLM.R | 844 +- restriktor-0.5-80/restriktor/R/conRLM_fit.R | 404 - restriktor-0.5-80/restriktor/R/conRLM_tests_F_Wald_score.R | 302 restriktor-0.5-80/restriktor/R/conTestD.R | 164 restriktor-0.5-80/restriktor/R/conTestLavaan_plot.R | 368 - restriktor-0.5-80/restriktor/R/conTest_ceq_conGLM_F_Wald_score.R | 316 restriktor-0.5-80/restriktor/R/conTest_ceq_conLM_F_Wald_score.R | 374 - restriktor-0.5-80/restriktor/R/conTest_ceq_conRLM_F_Wald_score.R | 292 restriktor-0.5-80/restriktor/R/conTest_conGLM.R | 1578 ++-- restriktor-0.5-80/restriktor/R/conTest_conLM.R | 1890 ++--- restriktor-0.5-80/restriktor/R/conTest_conMLM.R | 538 - restriktor-0.5-80/restriktor/R/conTest_conRLM.R | 1656 ++-- restriktor-0.5-80/restriktor/R/conTest_summary.R | 70 restriktor-0.5-80/restriktor/R/con_augmented_information.R | 200 restriktor-0.5-80/restriktor/R/con_boot.R | 48 restriktor-0.5-80/restriktor/R/con_boot_data.R | 30 restriktor-0.5-80/restriktor/R/con_boot_fixed.R | 28 restriktor-0.5-80/restriktor/R/con_bootstrapD.R | 780 +- restriktor-0.5-80/restriktor/R/con_constraints.R | 480 - restriktor-0.5-80/restriktor/R/con_constraints_nonlinear_idx.R | 38 restriktor-0.5-80/restriktor/R/con_iht.R | 18 restriktor-0.5-80/restriktor/R/con_incomplete_lm.R | 1346 +-- restriktor-0.5-80/restriktor/R/con_loglik.R | 84 restriktor-0.5-80/restriktor/R/con_partable.R | 4 restriktor-0.5-80/restriktor/R/con_pbar.R | 44 restriktor-0.5-80/restriktor/R/con_pvalue.R | 890 +- restriktor-0.5-80/restriktor/R/con_sandwich.R | 446 - restriktor-0.5-80/restriktor/R/get_results_benchmark.R |only restriktor-0.5-80/restriktor/R/goric.R | 1665 ++-- restriktor-0.5-80/restriktor/R/goric_benchmark.R |only restriktor-0.5-80/restriktor/R/goric_benchmark_plot.R |only restriktor-0.5-80/restriktor/R/goric_benchmark_print.R |only restriktor-0.5-80/restriktor/R/goric_benchmark_utilities.R |only restriktor-0.5-80/restriktor/R/goric_calculate_IC_weights.R | 134 restriktor-0.5-80/restriktor/R/goric_compute_loglik_complement.R | 172 restriktor-0.5-80/restriktor/R/goric_evSyn.R | 2156 ++--- restriktor-0.5-80/restriktor/R/goric_penalty.R | 230 restriktor-0.5-80/restriktor/R/goric_print.R | 436 - restriktor-0.5-80/restriktor/R/goric_summary.R | 486 - restriktor-0.5-80/restriktor/R/gorica_est.R | 446 - restriktor-0.5-80/restriktor/R/gorica_est_summary.R | 106 restriktor-0.5-80/restriktor/R/is_closed_convex_cone.R | 46 restriktor-0.5-80/restriktor/R/lav_constraints_parse.R | 298 restriktor-0.5-80/restriktor/R/restriktor.R | 85 restriktor-0.5-80/restriktor/R/restriktor_print.R | 148 restriktor-0.5-80/restriktor/R/restriktor_print_summary.R | 244 restriktor-0.5-80/restriktor/R/restriktor_summary.R | 478 - restriktor-0.5-80/restriktor/R/utilities.R | 657 - restriktor-0.5-80/restriktor/R/zzz.R | 18 restriktor-0.5-80/restriktor/README.md | 112 restriktor-0.5-80/restriktor/build/vignette.rds |binary restriktor-0.5-80/restriktor/inst/doc/Guidelines_GORIC_output.R | 1733 ++-- restriktor-0.5-80/restriktor/inst/doc/Guidelines_GORIC_output.Rmd | 2817 +++---- restriktor-0.5-80/restriktor/inst/doc/Guidelines_GORIC_output.html | 3611 +++++----- restriktor-0.5-80/restriktor/man/ConTestC.Rd |only restriktor-0.5-80/restriktor/man/ConTestLRT.Rd |only restriktor-0.5-80/restriktor/man/ConTestScore.Rd |only restriktor-0.5-80/restriktor/man/ConTestWald.Rd |only restriktor-0.5-80/restriktor/man/FacialBurns.Rd | 56 restriktor-0.5-80/restriktor/man/bootstrapD.Rd | 288 restriktor-0.5-80/restriktor/man/calculate_IC_weights.Rd | 116 restriktor-0.5-80/restriktor/man/chi_bar_square_weights.Rd | 218 restriktor-0.5-80/restriktor/man/conTestF.Rd | 676 - restriktor-0.5-80/restriktor/man/conTest_ceq.Rd | 328 restriktor-0.5-80/restriktor/man/conTest_methods.Rd | 82 restriktor-0.5-80/restriktor/man/conTest_summary.Rd | 306 restriktor-0.5-80/restriktor/man/evSyn.Rd | 688 - restriktor-0.5-80/restriktor/man/goric.Rd | 678 - restriktor-0.5-80/restriktor/man/goric_benchmark.Rd |only restriktor-0.5-80/restriktor/man/iht.Rd | 895 +- restriktor-0.5-80/restriktor/man/myGORICs.Rd | 34 restriktor-0.5-80/restriktor/man/myLLs.Rd | 34 restriktor-0.5-80/restriktor/man/myPTs.Rd | 34 restriktor-0.5-80/restriktor/man/restriktor-package.rd | 312 restriktor-0.5-80/restriktor/man/restriktor_methods.Rd | 230 restriktor-0.5-80/restriktor/vignettes/Guidelines_GORIC_output.Rmd | 2817 +++---- 91 files changed, 20442 insertions(+), 20463 deletions(-)
Title: Flexible Bayesian Optimization
Description: A modern and flexible approach to Bayesian Optimization / Model
Based Optimization building on the 'bbotk' package. 'mlr3mbo' is a toolbox
providing both ready-to-use optimization algorithms as well as their fundamental
building blocks allowing for straightforward implementation of custom
algorithms. Single- and multi-objective optimization is supported as well as
mixed continuous, categorical and conditional search spaces. Moreover, using
'mlr3mbo' for hyperparameter optimization of machine learning models within the
'mlr3' ecosystem is straightforward via 'mlr3tuning'. Examples of ready-to-use
optimization algorithms include Efficient Global Optimization by Jones et al.
(1998) <doi:10.1023/A:1008306431147>, ParEGO by Knowles (2006)
<doi:10.1109/TEVC.2005.851274> and SMS-EGO by Ponweiser et al. (2008)
<doi:10.1007/978-3-540-87700-4_78>.
Author: Lennart Schneider [cre, aut] ,
Jakob Richter [aut] ,
Marc Becker [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
Florian Pfisterer [aut] ,
Martin Binder [aut],
Sebastian Fischer [aut] ,
Michael H. Buselli [cph],
Wessel Dankers [cph],
Carlos Fonseca [...truncated...]
Maintainer: Lennart Schneider <lennart.sch@web.de>
Diff between mlr3mbo versions 0.2.3 dated 2024-07-01 and 0.2.4 dated 2024-07-06
DESCRIPTION | 6 +- MD5 | 10 ++-- NEWS.md | 4 + R/AcqFunction.R | 2 README.md | 12 +++-- inst/doc/mlr3mbo.html | 116 +++++++++++++++++++++++++------------------------- 6 files changed, 78 insertions(+), 72 deletions(-)
Title: Block Structure Detection Using Singular Vectors
Description: Performs block diagonal covariance matrix detection using singular vectors (BD-SVD), which can be extended to hierarchical variable clustering (HC-SVD). The methods are described in Bauer (202Xa) <doi:10.48550/arXiv.2211.16155> and Bauer (202Xb) <doi:10.48550/arXiv.2308.06820>.
Author: Jan O. Bauer [aut, cre] ,
Ron Holzapfel [aut]
Maintainer: Jan O. Bauer <j.bauer@vu.nl>
Diff between bdsvd versions 0.1-0 dated 2024-03-29 and 0.2.0 dated 2024-07-06
DESCRIPTION | 8 - MD5 | 18 +-- R/bdsvd.R | 272 ++++++++++++++++++++++++++++++++----------------- R/hcsvd.R | 154 ++++++++++++++------------- man/bdsvd.Rd | 20 ++- man/bdsvd.ht.Rd | 19 ++- man/bdsvd.structure.Rd | 18 +-- man/hcsvd.Rd | 21 ++- man/hcsvd.cor.sim.Rd | 2 man/single.bdsvd.Rd | 4 10 files changed, 327 insertions(+), 209 deletions(-)
Title: Parallel Programming Tools for 'Rcpp'
Description: High level functions for parallel programming with 'Rcpp'.
For example, the 'parallelFor()' function can be used to convert the work of
a standard serial "for" loop into a parallel one and the 'parallelReduce()'
function can be used for accumulating aggregate or other values.
Author: JJ Allaire [aut],
Romain Francois [aut, cph],
Kevin Ushey [aut, cre],
Gregory Vandenbrouck [aut],
Marcus Geelnard [aut, cph] ,
Hamada S. Badr [ctb] ,
Posit, PBC [cph],
Intel [aut, cph] ,
Microsoft [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between RcppParallel versions 5.1.7 dated 2023-02-27 and 5.1.8 dated 2024-07-06
DESCRIPTION | 6 ++-- MD5 | 20 +++++++++------- NEWS.md | 4 +++ R/platform.R | 4 +++ R/tbb.R | 14 ++++++++--- inst/include/RcppParallel.h | 13 ++++++++++ inst/tests/cpp/truefalse_macros.cpp |only inst/tests/runit.truefalse_macros.R |only src/Makevars.in | 39 ++++++++++++++++++++++++-------- src/tbb/build/Makefile.tbb | 6 ++++ src/tbb/build/Makefile.tbbmalloc | 6 ++++ src/tbb/src/tbbmalloc/TypeDefinitions.h | 2 - 12 files changed, 86 insertions(+), 28 deletions(-)
Title: Download Map Data from GISCO API - Eurostat
Description: Tools to download data from the GISCO (Geographic Information
System of the Commission) Eurostat database
<https://ec.europa.eu/eurostat/web/gisco>. Global and European map
data available. This package is in no way officially related to or
endorsed by Eurostat.
Author: Diego Hernangomez [aut, cre, cph]
,
EuroGeographics [cph] ,
Vincent Arel-Bundock [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between giscoR versions 0.5.0 dated 2024-05-29 and 0.5.1 dated 2024-07-06
DESCRIPTION | 8 - MD5 | 52 +++--- NEWS.md | 6 R/gisco_addressapi.R | 17 -- R/gisco_get_airports.R | 63 ++++---- R/gisco_get_education.R | 2 R/gisco_get_healthcare.R | 14 - README.md | 14 - build/vignette.rds |binary data/gisco_coastallines.rda |binary data/gisco_countries.rda |binary data/gisco_countrycode.rda |binary data/gisco_db.rda |binary data/gisco_nuts.rda |binary inst/CITATION | 10 - inst/doc/giscoR.Rmd | 2 inst/doc/giscoR.html | 4 inst/schemaorg.json | 6 man/chunks/addressapi.Rmd | 2 man/gisco_addressapi.Rd | 19 -- man/gisco_get_airports.Rd | 63 ++++---- man/gisco_get_healthcare.Rd | 8 - tests/testthat/test-gisco_bulk_download.R | 208 +++++++++++++-------------- tests/testthat/test-gisco_get_coastallines.R | 3 tests/testthat/test-gisco_get_education.R | 4 vignettes/giscoR-1.png |binary vignettes/giscoR.Rmd | 2 27 files changed, 245 insertions(+), 262 deletions(-)
Title: 'ggplot2' Based Plots with Statistical Details
Description: Extension of 'ggplot2', 'ggstatsplot' creates graphics with
details from statistical tests included in the plots themselves. It
provides an easier syntax to generate information-rich plots for
statistical analysis of continuous (violin plots, scatterplots,
histograms, dot plots, dot-and-whisker plots) or categorical (pie and
bar charts) data. Currently, it supports the most common types of
statistical approaches and tests: parametric, nonparametric, robust,
and Bayesian versions of t-test/ANOVA, correlation analyses,
contingency table analysis, meta-analysis, and regression analyses.
References: Patil (2021) <doi:10.21105/joss.03236>.
Author: Indrajeet Patil [cre, aut, cph]
,
Chuck Powell [ctb]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between ggstatsplot versions 0.12.3 dated 2024-04-06 and 0.12.4 dated 2024-07-06
DESCRIPTION | 22 MD5 | 131 - NEWS.md | 18 R/ggbarstats.R | 14 R/ggbetweenstats.R | 2 R/ggcoefstats.R | 10 R/ggdotplotstats.R | 2 R/gghistostats.R | 17 R/ggpiestats.R | 4 R/ggscatterstats.R | 6 R/ggwithinstats.R | 2 README.md | 66 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/ggstatsplot.html | 51 man/figures/README-ggbetweenstats1-1.png |binary man/figures/README-ggbetweenstats2-1.png |binary man/figures/README-gghistostats2-1.png |binary man/figures/README-ggwithinstats1-1.png |binary man/figures/README-ggwithinstats2-1.png |binary man/ggcoefstats.Rd | 2 man/ggdotplotstats.Rd | 3 man/gghistostats.Rd | 9 man/ggscatterstats.Rd | 11 man/grouped_ggbarstats.Rd | 3 man/grouped_gghistostats.Rd | 4 man/rmd-fragments/gghistostats_graphics.Rmd | 1 tests/testthat.R | 2 tests/testthat/_snaps/ggbetweenstats/default-plot-as-expected.svg | 8 tests/testthat/_snaps/ggbetweenstats/mean-shown-with-scarce-data.svg | 4 tests/testthat/_snaps/ggbetweenstats/modification-with-ggplot2-works-as-expected.svg | 4 tests/testthat/_snaps/ggbetweenstats/plot-with-outliers-as-expected.svg | 12 tests/testthat/_snaps/ggcoefstats/meta-analysis-works.svg | 161 - tests/testthat/_snaps/gghistostats/defaults-as-expected.svg | 960 +++++----- tests/testthat/_snaps/gghistostats/plot-normal-curve.svg | 1 tests/testthat/_snaps/ggpiestats/empty-groups-in-factors-not-dropped.svg |only tests/testthat/_snaps/ggwithinstats/centrality-path-can-be-turned-off.svg | 8 tests/testthat/_snaps/ggwithinstats/defaults-plots-more-than-two-groups.svg | 6 tests/testthat/_snaps/ggwithinstats/defaults-plots-two-groups.svg | 4 tests/testthat/_snaps/ggwithinstats/ggplot2-commands-work.svg | 6 tests/testthat/_snaps/ggwithinstats/grouped-plots-default.svg | 8 tests/testthat/_snaps/pairwise-ggsignif/adding-caption-works.svg | 8 tests/testthat/_snaps/pairwise-ggsignif/between-bayes.svg | 6 tests/testthat/_snaps/pairwise-ggsignif/between-non-parametric-all.svg | 6 tests/testthat/_snaps/pairwise-ggsignif/between-non-parametric-only-non-significant.svg | 6 tests/testthat/_snaps/pairwise-ggsignif/between-non-parametric-only-significant.svg | 6 tests/testthat/_snaps/pairwise-ggsignif/between-parametric-all.svg | 8 tests/testthat/_snaps/pairwise-ggsignif/between-parametric-only-non-significant.svg | 8 tests/testthat/_snaps/pairwise-ggsignif/between-parametric-only-significant.svg | 8 tests/testthat/_snaps/pairwise-ggsignif/between-robust-all.svg | 8 tests/testthat/_snaps/pairwise-ggsignif/between-robust-only-non-significant.svg | 8 tests/testthat/_snaps/pairwise-ggsignif/between-robust-only-significant.svg | 8 tests/testthat/_snaps/pairwise-ggsignif/within-bayes.svg | 8 tests/testthat/_snaps/pairwise-ggsignif/within-non-parametric-all.svg | 8 tests/testthat/_snaps/pairwise-ggsignif/within-non-parametric-only-non-significant.svg | 8 tests/testthat/_snaps/pairwise-ggsignif/within-non-parametric-only-significant.svg | 8 tests/testthat/_snaps/pairwise-ggsignif/within-parametric-all.svg | 8 tests/testthat/_snaps/pairwise-ggsignif/within-parametric-only-non-significant.svg | 8 tests/testthat/_snaps/pairwise-ggsignif/within-parametric-only-significant.svg | 8 tests/testthat/_snaps/pairwise-ggsignif/within-robust-all.svg | 8 tests/testthat/_snaps/pairwise-ggsignif/within-robust-only-non-significant.svg | 8 tests/testthat/_snaps/pairwise-ggsignif/within-robust-only-significant.svg | 8 tests/testthat/test-ggcoefstats.R | 15 tests/testthat/test-gghistostats.R | 7 tests/testthat/test-ggpiestats.R | 10 vignettes/web_only/purrr_examples.Rmd | 5 67 files changed, 852 insertions(+), 909 deletions(-)
Title: Automated Uncertainty Analysis
Description: Methods and tools for model selection and multi-model inference (Burnham and Anderson (2002) <doi:10.1007/b97636>, among others).
'SUR' (for parameter estimation), 'logit'/'probit' (for binary classification), and 'VARMA' (for time-series forecasting) are implemented.
Evaluations are both in-sample and out-of-sample.
It is designed to be efficient in terms of CPU usage and memory consumption.
Author: Ramin Mojab [aut, cre],
Stephen Becker [cph] by Ciyou Zhu . L-BFGS-B Version 3.0 is an
algorithmic update from 2011, with coding changes by J. L. Morales)
Maintainer: Ramin Mojab <rmojab63@gmail.com>
Diff between ldt versions 0.5.2 dated 2023-12-21 and 0.5.3 dated 2024-07-06
DESCRIPTION | 6 +- MD5 | 16 +++--- build/partial.rdb |binary build/vignette.rds |binary inst/doc/bin.html | 7 +- inst/doc/sur.html | 134 ++++++++++++++++++++++++++-------------------------- inst/doc/varma.html | 47 +++++++++--------- src/matrix.cpp | 2 src/matrix.h | 18 +++--- 9 files changed, 117 insertions(+), 113 deletions(-)
Title: Shape Foundry & Geom for 'ggplot2'
Description: A 'ggplot2' extension that supports arbitrary
hand-crafted colourable & fillable shapes. New shapes may be feature
requested via a Github issue.
Author: Carl Goodwin [aut, cre, cph]
Maintainer: Carl Goodwin <carl.goodwin@quantumjitter.com>
Diff between ggfoundry versions 0.2.0 dated 2024-06-09 and 0.3.1 dated 2024-07-06
ggfoundry-0.2.0/ggfoundry/R/sysdata.rda |only ggfoundry-0.2.0/ggfoundry/inst/doc/example_uses.R |only ggfoundry-0.2.0/ggfoundry/inst/doc/example_uses.Rmd |only ggfoundry-0.2.0/ggfoundry/inst/doc/example_uses.html |only ggfoundry-0.2.0/ggfoundry/tests/testthat/_snaps/geom_casting |only ggfoundry-0.2.0/ggfoundry/vignettes/Font_Awesome_6_Brands-Regular-400.otf |only ggfoundry-0.2.0/ggfoundry/vignettes/example_uses.Rmd |only ggfoundry-0.3.1/ggfoundry/DESCRIPTION | 14 ggfoundry-0.3.1/ggfoundry/MD5 | 54 - ggfoundry-0.3.1/ggfoundry/NAMESPACE | 11 ggfoundry-0.3.1/ggfoundry/NEWS.md | 19 ggfoundry-0.3.1/ggfoundry/R/geom_casting.R | 115 ++- ggfoundry-0.3.1/ggfoundry/R/ggfoundry-package.R | 7 ggfoundry-0.3.1/ggfoundry/R/utils.R | 13 ggfoundry-0.3.1/ggfoundry/R/zzz.R |only ggfoundry-0.3.1/ggfoundry/README.md | 16 ggfoundry-0.3.1/ggfoundry/build/vignette.rds |binary ggfoundry-0.3.1/ggfoundry/inst/WORDLIST |only ggfoundry-0.3.1/ggfoundry/inst/doc/ggfoundry.R | 238 ------ ggfoundry-0.3.1/ggfoundry/inst/doc/ggfoundry.Rmd | 299 +------- ggfoundry-0.3.1/ggfoundry/inst/doc/ggfoundry.html | 349 ++-------- ggfoundry-0.3.1/ggfoundry/inst/extdata/container-tube_col-cairo.svg | 13 ggfoundry-0.3.1/ggfoundry/inst/extdata/container-tube_fill-cairo.svg | 4 ggfoundry-0.3.1/ggfoundry/inst/extdata/leaf-hibiscus_col-cairo.svg |only ggfoundry-0.3.1/ggfoundry/inst/extdata/leaf-hibiscus_fill-cairo.svg |only ggfoundry-0.3.1/ggfoundry/inst/extdata/leaf-oak_col-cairo.svg |only ggfoundry-0.3.1/ggfoundry/inst/extdata/leaf-oak_fill-cairo.svg |only ggfoundry-0.3.1/ggfoundry/man/display_palette.Rd |only ggfoundry-0.3.1/ggfoundry/man/geom_casting.Rd | 14 ggfoundry-0.3.1/ggfoundry/man/shapes_cast.Rd | 2 ggfoundry-0.3.1/ggfoundry/tests/spelling.R |only ggfoundry-0.3.1/ggfoundry/tests/testthat/_snaps/geom_casting.md | 88 ++ ggfoundry-0.3.1/ggfoundry/tests/testthat/_snaps/utils.md |only ggfoundry-0.3.1/ggfoundry/tests/testthat/test-geom_casting.R | 34 ggfoundry-0.3.1/ggfoundry/tests/testthat/test-utils.R |only ggfoundry-0.3.1/ggfoundry/vignettes/ggfoundry.Rmd | 299 +------- 36 files changed, 511 insertions(+), 1078 deletions(-)
Title: 'binb' is not 'Beamer'
Description: A collection of 'LaTeX' styles using 'Beamer' customization for
pdf-based presentation slides in 'RMarkdown'. At present it contains
'RMarkdown' adaptations of the LaTeX themes 'Metropolis' (formerly 'mtheme')
theme by Matthias Vogelgesang and others (now included in 'TeXLive'), the
'IQSS' by Ista Zahn (which is included here), and the 'Monash' theme by
Rob J Hyndman. Additional (free) fonts may be needed: 'Metropolis' prefers
'Fira', and 'IQSS' requires 'Libertinus'.
Author: Dirk Eddelbuettel, Ista Zahn and Rob Hyndman
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between binb versions 0.0.6 dated 2020-06-10 and 0.0.7 dated 2024-07-06
binb-0.0.6/binb/inst/rmarkdown/templates/presento/resources/auto |only binb-0.0.7/binb/ChangeLog | 46 ++++++++++ binb-0.0.7/binb/DESCRIPTION | 13 +- binb-0.0.7/binb/MD5 | 19 +--- binb-0.0.7/binb/NAMESPACE | 1 binb-0.0.7/binb/README.md | 12 +- binb-0.0.7/binb/build/vignette.rds |binary binb-0.0.7/binb/inst/doc/metropolisDemo.Rmd | 2 binb-0.0.7/binb/inst/doc/metropolisDemo.pdf |binary binb-0.0.7/binb/inst/rmarkdown/templates/metropolis/resources/template.tex | 2 binb-0.0.7/binb/vignettes/metropolisDemo.Rmd | 2 11 files changed, 73 insertions(+), 24 deletions(-)
Title: Fast Text Tokenization
Description: Interfaces with the 'Hugging Face' tokenizers library to provide implementations
of today's most used tokenizers such as the 'Byte-Pair Encoding' algorithm
<https://huggingface.co/docs/tokenizers/index>. It's extremely fast for both
training new vocabularies and tokenizing texts.
Author: Daniel Falbel [aut, cre],
Posit [cph]
Maintainer: Daniel Falbel <daniel@posit.co>
Diff between tok versions 0.1.2 dated 2024-06-27 and 0.1.3 dated 2024-07-06
DESCRIPTION | 6 - MD5 | 12 +- NEWS.md | 2 src/rust/Cargo.lock | 212 +------------------------------------- src/rust/Cargo.toml | 2 src/rust/config/cargo-config.toml | 10 - src/rust/vendor.tar.xz |binary 7 files changed, 21 insertions(+), 223 deletions(-)
Title: Applies Display Metadata to Analysis Results Datasets
Description: Creates a framework to store and apply display metadata to Analysis
Results Datasets (ARDs). The use of 'tfrmt' allows users to define table
format and styling without the data, and later apply the format to the data.
Author: Becca Krouse [aut, cre],
Christina Fillmore [aut] ,
GlaxoSmithKline Research & Development Limited [cph, fnd],
Atorus Research LLC [cph, fnd],
Ellis Hughes [aut] ,
Karima Ahmad [aut] ,
Shannon Haughton [aut]
Maintainer: Becca Krouse <becca.z.krouse@gsk.com>
Diff between tfrmt versions 0.1.1 dated 2024-03-15 and 0.1.2 dated 2024-07-06
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ R/apply_tfrmt.R | 2 +- R/col_plan.R | 6 +++--- R/print_to_gt.R | 3 ++- man/col_plan.Rd | 6 +++--- 7 files changed, 24 insertions(+), 17 deletions(-)
Title: Prepare Reproducible Example Code via the Clipboard
Description: Convenience wrapper that uses the 'rmarkdown' package to
render small snippets of code to target formats that include both code
and output. The goal is to encourage the sharing of small,
reproducible, and runnable examples on code-oriented websites, such as
<https://stackoverflow.com> and <https://github.com>, or in email. The
user's clipboard is the default source of input code and the default
target for rendered output. 'reprex' also extracts clean, runnable R
code from various common formats, such as copy/paste from an R
session.
Author: Jennifer Bryan [aut, cre] ,
Jim Hester [aut] ,
David Robinson [aut],
Hadley Wickham [aut] ,
Christophe Dervieux [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Jennifer Bryan <jenny@posit.co>
Diff between reprex versions 2.1.0 dated 2024-01-11 and 2.1.1 dated 2024-07-06
DESCRIPTION | 12 ++++----- MD5 | 46 +++++++++++++++++------------------ NEWS.md | 10 ++++++- R/reprex-addin.R | 8 +++--- R/reprex.R | 4 +-- R/reprex_impl.R | 2 - build/vignette.rds |binary inst/doc/reprex-dos-and-donts.html | 2 - man/reprex.Rd | 4 +-- man/reprex_addin.Rd | 9 +++--- man/reprex_document.Rd | 2 - man/un-reprex.Rd | 2 - tests/testthat/_snaps/reprex.md | 26 +++++++++++++++++++ tests/testthat/helper.R | 4 --- tests/testthat/test-knitr-options.R | 6 ++-- tests/testthat/test-outfiles.R | 8 +++--- tests/testthat/test-reprex-options.R | 2 - tests/testthat/test-reprex.R | 42 +++++++++++++++++++++---------- tests/testthat/test-rprofile.R | 2 - tests/testthat/test-session-info.R | 2 - tests/testthat/test-stdout-stderr.R | 2 - tests/testthat/test-utf8.R | 16 ++++++------ tests/testthat/test-venues.R | 5 ++- vignettes/articles/magic-reprex.Rmd | 10 +++---- 24 files changed, 134 insertions(+), 92 deletions(-)
Title: Create Tables from Different Types of Regression
Description: Create regression tables from generalized linear model(GLM), generalized estimating equation(GEE), generalized linear mixed-effects model(GLMM), Cox proportional hazards model, survey-weighted generalized linear model(svyglm) and survey-weighted Cox model results for publication.
Author: Jinseob Kim [aut, cre] ,
Zarathu [cph, fnd],
Yoonkyoung Jeon [aut],
Jaehun Shon [aut]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jstable versions 1.2.6 dated 2024-05-31 and 1.3.0 dated 2024-07-06
DESCRIPTION | 16 ++--- MD5 | 17 ++--- NEWS.md | 10 +++ R/forestcox.R | 108 ++++++++++++++++++++++++++++------- build/vignette.rds |binary inst/doc/jstable.html | 56 +++++++++++------- man/TableSubgroupCox.Rd | 8 ++ man/TableSubgroupMultiCox.Rd | 8 ++ tests/testthat/test-forestcox.R | 8 ++ tests/testthat/testthat-problems.rds |only 10 files changed, 172 insertions(+), 59 deletions(-)
Title: 1d Water Level Interpolation along the Rivers Elbe and Rhine
Description: An S4 class and several functions which utilize internally stored
datasets and gauging data enable 1d water level interpolation. The S4 class
(WaterLevelDataFrame) structures the computation and visualisation
of 1d water level information along the German federal waterways Elbe and
Rhine. 'hyd1d' delivers 1d water level data - extracted from the 'FLYS'
database - and validated gauging data - extracted from the hydrological
database 'WISKI7' - package-internally. For computations near real time
gauging data are queried externally from the 'PEGELONLINE REST API'
<https://pegelonline.wsv.de/webservice/dokuRestapi>.
Author: Arnd Weber [aut, cre] ,
Marcus Hatz [aut],
Wolfgang Stuermer [ctb],
Wilfried Wiechmann [ctb],
Benjamin Eberhardt [ctb]
Maintainer: Arnd Weber <arnd.weber@bafg.de>
Diff between hyd1d versions 0.5.1 dated 2023-11-20 and 0.5.2 dated 2024-07-06
DESCRIPTION | 12 MD5 | 74 +-- NEWS.md | 7 R/data.R | 11 R/getGaugingDataW.R | 37 - R/getPegelonlineW.R | 239 +++++++++++ R/hyd1d.R | 3 R/plotShiny.R | 4 R/updateGaugingData.R | 43 +- R/waterLevel.R | 66 +-- R/waterLevelFlood1.R | 40 - R/waterLevelFlood2.R | 4 R/waterLevelFlys3.R | 10 R/waterLevelFlys3InterpolateX.R | 2 R/waterLevelFlys3InterpolateY.R | 6 R/waterLevelPegelonline.R | 65 +-- build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 4 inst/doc/hyd1d.R | 10 inst/doc/hyd1d.Rmd | 22 - inst/doc/hyd1d.html | 498 +++++++++++------------ inst/doc/vignette_DE.R | 30 - inst/doc/vignette_DE.Rmd | 100 ++-- inst/doc/vignette_DE.html | 582 ++++++++++++++-------------- man/df.flys.Rd | 2 man/df.gauging_data.Rd | 7 man/getPegelonlineW.Rd | 4 man/hyd1d.Rd | 25 + man/plotShiny.Rd | 4 man/waterLevelFlood1.Rd | 2 man/waterLevelFlood2.Rd | 4 man/waterLevelFlys3.Rd | 6 man/waterLevelFlys3InterpolateX.Rd | 2 man/waterLevelFlys3InterpolateY.Rd | 2 tests/testthat/test_waterLevelPegelonline.R | 4 vignettes/hyd1d.Rmd | 22 - vignettes/vignette_DE.Rmd | 100 ++-- 38 files changed, 1164 insertions(+), 889 deletions(-)
Title: Connect to the 'jamovi' Statistical Spreadsheet
Description: Methods to access data sets from the 'jamovi' statistical
spreadsheet (see <https://www.jamovi.org> for more information) from R.
Author: Jonathon Love [aut, cre]
Maintainer: Jonathon Love <jon@thon.cc>
Diff between jmvconnect versions 2.3.13 dated 2022-06-08 and 2.5.7 dated 2024-07-06
jmvconnect-2.3.13/jmvconnect/src/Makevars |only jmvconnect-2.5.7/jmvconnect/DESCRIPTION | 10 +++++----- jmvconnect-2.5.7/jmvconnect/MD5 | 7 +++---- jmvconnect-2.5.7/jmvconnect/R/eval.R | 4 ++++ jmvconnect-2.5.7/jmvconnect/src/column.h | 8 +------- 5 files changed, 13 insertions(+), 16 deletions(-)
Title: Retrieve Information Published on J-STAGE
Description: Provides tools to access the J-STAGE WebAPI and retrieve
information published on J-STAGE
<https://www.jstage.jst.go.jp/browse/-char/ja>.
Author: Takeshi Nishimura [aut, cph, cre]
Maintainer: Takeshi Nishimura <takenishi@gmail.com>
Diff between jstager versions 0.0.3 dated 2024-06-22 and 0.0.5 dated 2024-07-06
DESCRIPTION | 12 ++-- MD5 | 17 +++--- NAMESPACE | 1 NEWS.md | 8 ++ R/get_jstage_volumes.R | 51 ++++++++----------- R/jstage_metadata.R | 4 - R/jstage_references.R |only R/zzz.R |only README.md | 126 +++++++++++++++++++++++++++++++++++------------ man/jstage_metadata.Rd | 4 - man/jstage_references.Rd |only 11 files changed, 149 insertions(+), 74 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-20 0.7.3
2023-09-06 0.7.2
2023-07-17 0.7.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-06-29 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-05-08 1.0.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-20 0.5.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-06-27 3.6.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-06-18 2.3.1