Title: Missing Person Identification Tools
Description: An open source software package written in R statistical language. It consist in a set of decision making tools to conduct missing person searches. Particularly, it allows computing optimal LR threshold for declaring potential matches in DNA-based database search. More recently 'mispitools' incorporates preliminary investigation data based LRs. Statistical weight of different traces of evidence such as biological sex, age and hair color are presented. For citing mispitools please use the following references: Marsico and Caridi, 2023 <doi:10.1016/j.fsigen.2023.102891> and Marsico, Vigeland et al. 2021 <doi:10.1016/j.fsigen.2021.102519>.
Author: Franco Marsico [aut, cre]
Maintainer: Franco Marsico <franco.lmarsico@gmail.com>
Diff between mispitools versions 1.0.0 dated 2023-09-05 and 1.1.0 dated 2024-07-07
DESCRIPTION | 8 ++++---- MD5 | 27 ++++++++++++++++----------- NAMESPACE | 2 ++ R/DeT.R | 28 +++++++++++++++++++++++----- R/LRdist.R | 17 +++++++++++++++++ R/Trates.R | 16 ++++++++++++++++ R/bidirectionalKL.R |only R/deplot.R | 15 +++++++++++++++ R/markersFromPed.R |only R/multi_kl_divergence.R |only R/postSim.R | 20 +++++++++++++++++--- R/simLRgen.R | 7 ++++--- README.md | 4 ++-- build/partial.rdb |binary man/bidirectionalKL.Rd |only man/mispitools-package.Rd | 2 +- man/multi_kl_divergence.Rd |only 17 files changed, 117 insertions(+), 29 deletions(-)
Title: MultiGroup Method and Simulation Data Analysis
Description: Two method new of multigroup and simulation of data.
The first technique called multigroup PCA (mgPCA) this multivariate exploration approach
that has the idea of considering the structure of groups and / or different types
of variables. On the other hand, the second multivariate technique called Multigroup Dimensionality
Reduction (MDR) it is another multivariate exploration method that is based on
projections. In addition, a method called Single Dimension Exploration (SDE) was
incorporated for to analyze the exploration of the data. It could help us in a better
way to observe the behavior of the multigroup data with certain variables of interest.
Author: Carolina Millap/'an [aut, cre],
Esteban Vegas [aut] ,
Ferran Reverter [aut] ,
Josep M Oller [aut] ,
Joel Mu/~noz [aut]
Maintainer: Carolina Millap/'an <cayoya19@gmail.com>
Diff between MultiGroupO versions 0.3.0 dated 2024-06-04 and 0.4.0 dated 2024-07-07
DESCRIPTION | 16 MD5 | 4 inst/doc/vignetteMult.html | 8979 ++++++++++++++++++++++----------------------- 3 files changed, 4548 insertions(+), 4451 deletions(-)
Title: Convenient Data Exchange with Microsoft Excel
Description: Allows access to data in running instance of Microsoft Excel
(e. g. 'xl[a1] = xl[b2]*3' and so on). Graphics can be transferred with
'xl[a1] = current.graphics()'. Additionally there are function for reading/writing
'Excel' files - 'xl.read.file'/'xl.save.file'. They are not fast but able to read/write
'*.xlsb'-files and password-protected files. There is an Excel workbook with
examples of calling R from Excel in the 'doc' folder. It tries to keep things as
simple as possible - there are no needs in any additional
installations besides R, only 'VBA' code in the Excel workbook.
Microsoft Excel is required for this package.
Author: Gregory Demin <excel.link.feedback@gmail.com>. To comply CRAN policy
includes source code from 'RDCOMClient' by
Duncan Temple Lang <duncan@wald.ucdavis.edu>.
Maintainer: Gregory Demin <excel.link.feedback@gmail.com>
Diff between excel.link versions 0.9.12 dated 2024-01-17 and 0.9.13 dated 2024-07-07
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS | 4 ++++ R/excel.link.R | 8 +------- build/vignette.rds |binary inst/doc/CallingRFromExcel.html | 4 ++-- src/COMError.cpp | 6 +++--- src/RCOMObject.h | 6 +----- src/RUtils.c | 6 +++--- src/connect.cpp | 8 +++----- src/converters.cpp | 6 +++--- 11 files changed, 34 insertions(+), 42 deletions(-)
Title: Distances on Directed Graphs
Description: Distances on dual-weighted directed graphs using
priority-queue shortest paths (Padgham (2019) <doi:10.32866/6945>).
Weighted directed graphs have weights from A to B which may differ
from those from B to A. Dual-weighted directed graphs have two sets
of such weights. A canonical example is a street network to be used
for routing in which routes are calculated by weighting distances
according to the type of way and mode of transport, yet lengths of
routes must be calculated from direct distances.
Author: Mark Padgham [aut, cre],
Andreas Petutschnig [aut],
David Cooley [aut],
Robin Lovelace [ctb],
Andrew Smith [ctb],
Malcolm Morgan [ctb],
Shane Saunders [cph] ,
Stanislaw Adaszewski [cph]
Maintainer: Mark Padgham <mark.padgham@email.com>
Diff between dodgr versions 0.4.0 dated 2024-05-25 and 0.4.1 dated 2024-07-07
DESCRIPTION | 13 +- MD5 | 48 ++++---- NAMESPACE | 1 NEWS.md | 15 ++ R/RcppExports.R | 24 ++++ R/compare-heaps.R | 4 R/dists.R | 4 R/dodgr-package.R | 1 R/flows.R | 47 +++++++- R/graph-conversion.R | 2 README.md | 26 ++++ build/vignette.rds |binary inst/doc/dists-categorical.html | 14 +- inst/doc/dodgr.html | 122 ++++++++-------------- inst/doc/flows.html | 4 inst/doc/parallel.html | 4 inst/doc/times.html | 4 man/compare_heaps.Rd | 5 man/dodgr.Rd | 1 man/dodgr_flows_aggregate.Rd | 7 + src/RcppExports.cpp | 19 +++ src/concaveman.h | 5 src/flows.cpp | 220 ++++++++++++++++++++++++++++++++++++++++ src/flows.h | 9 + tests/testthat/test-flows.R | 25 ++++ 25 files changed, 489 insertions(+), 135 deletions(-)
Title: Quantitative Analysis Tools for Gender Studies
Description: Provides tools for quantitative analysis in gender studies, including functions to calculate various gender inequality metrics such as the Gender Pay Gap, Gender Inequality Index (GII), Gender Development Index (GDI), and Gender Empowerment Measure (GEM). Also includes extracted secondary example datasets for practice and learning purposes, which were obtained from the UNDP Human Development Reports Data Center and the World Bank Gender Data Portal by the author the dataset is available on <doi:10.34740/kaggle/dsv/6359326>. References: Miller, Kevin; Vagins, Deborah J. (2021) <https://eric.ed.gov/?id=ED596219>. Jacques Charmes & Saskia Wieringa (2003) <doi:10.1080/1464988032000125773>. Gaëlle Ferrant (2010) <https://shs.hal.science/halshs-00462463/>.
Author: S M Mashrur Arafin Ayon [aut, cre]
Maintainer: S M Mashrur Arafin Ayon <mashrur399@gmail.com>
Diff between genderstat versions 0.1.3 dated 2023-08-22 and 0.1.5 dated 2024-07-07
genderstat-0.1.3/genderstat/R/plot_gdi.R |only genderstat-0.1.3/genderstat/R/plot_gem.R |only genderstat-0.1.3/genderstat/R/plot_gii.R |only genderstat-0.1.3/genderstat/R/plot_gpg.R |only genderstat-0.1.3/genderstat/inst/doc/gender-analysis.R |only genderstat-0.1.3/genderstat/man/compute_gii.Rd |only genderstat-0.1.3/genderstat/man/plot_gdi.Rd |only genderstat-0.1.3/genderstat/man/plot_gem.Rd |only genderstat-0.1.3/genderstat/man/plot_gii.Rd |only genderstat-0.1.3/genderstat/man/plot_gii_education.Rd |only genderstat-0.1.3/genderstat/man/plot_gii_empowerment.Rd |only genderstat-0.1.3/genderstat/man/plot_gii_health.Rd |only genderstat-0.1.3/genderstat/man/plot_gii_labor.Rd |only genderstat-0.1.3/genderstat/man/plot_gpg.Rd |only genderstat-0.1.3/genderstat/man/plot_gpg_q1.Rd |only genderstat-0.1.3/genderstat/man/plot_gpg_q2.Rd |only genderstat-0.1.3/genderstat/man/plot_gpg_q3.Rd |only genderstat-0.1.3/genderstat/man/plot_gpg_q4.Rd |only genderstat-0.1.3/genderstat/man/plot_hdi.Rd |only genderstat-0.1.5/genderstat/DESCRIPTION | 13 genderstat-0.1.5/genderstat/MD5 | 58 - genderstat-0.1.5/genderstat/NAMESPACE | 28 genderstat-0.1.5/genderstat/NEWS.md | 9 genderstat-0.1.5/genderstat/R/gender_development_index.R | 58 - genderstat-0.1.5/genderstat/R/gender_empowerment_measure.R | 55 - genderstat-0.1.5/genderstat/R/gender_inequality_index.R | 93 +- genderstat-0.1.5/genderstat/R/gender_pay_gap.R | 53 - genderstat-0.1.5/genderstat/build/vignette.rds |binary genderstat-0.1.5/genderstat/inst/doc/gender-analysis.Rmd | 132 ++- genderstat-0.1.5/genderstat/inst/doc/gender-analysis.html | 388 +++------- genderstat-0.1.5/genderstat/man/gender_development_index.Rd | 8 genderstat-0.1.5/genderstat/man/gender_empowerment_measure.Rd | 7 genderstat-0.1.5/genderstat/man/gender_inequality_index.Rd | 8 genderstat-0.1.5/genderstat/man/gender_pay_gap.Rd | 7 genderstat-0.1.5/genderstat/man/real_data_GDI.Rd | 18 genderstat-0.1.5/genderstat/man/real_data_GEM.Rd | 8 genderstat-0.1.5/genderstat/man/real_data_GII.Rd | 22 genderstat-0.1.5/genderstat/man/real_data_GPG.Rd | 14 genderstat-0.1.5/genderstat/tests |only genderstat-0.1.5/genderstat/vignettes/gender-analysis.Rmd | 132 ++- 40 files changed, 501 insertions(+), 610 deletions(-)
Title: 'Rcpp' Bindings for the 'simdjson' Header-Only Library for
'JSON' Parsing
Description: The 'JSON' format is ubiquitous for data interchange, and the
'simdjson' library written by Daniel Lemire (and many contributors) provides a
high-performance parser for these files which by relying on parallel 'SIMD'
instruction manages to parse these files as faster than disk speed. See the
<doi:10.48550/arXiv.1902.08318> paper for more details about 'simdjson'. This
package parses 'JSON' from string, file, or remote URLs under a variety of
settings.
Author: Dirk Eddelbuettel, Brendan Knapp, Daniel Lemire
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppSimdJson versions 0.1.11 dated 2023-11-28 and 0.1.12 dated 2024-07-07
ChangeLog | 32 DESCRIPTION | 17 MD5 | 20 README.md | 42 build/partial.rdb |binary demo/simpleBenchmark.R | 13 demo/simpleParseBenchmark.R | 11 inst/NEWS.Rd | 12 inst/include/RcppSimdJson/deserialize/Type_Doctor.hpp | 2 inst/include/simdjson.cpp |49696 +++++++- inst/include/simdjson.h |106243 ++++++++++++++++-- 11 files changed, 140635 insertions(+), 15453 deletions(-)
Title: Latent Interaction (and Moderation) Analysis in Structural
Equation Models (SEM)
Description: Estimation of interaction (i.e., moderation) effects between latent variables
in structural equation models (SEM).
The supported methods are:
The constrained approach (Algina & Moulder, 2001).
The unconstrained approach (Marsh et al., 2004).
The residual centering approach (Little et al., 2006).
The double centering approach (Lin et al., 2010).
The latent moderated structural equations (LMS) approach (Klein & Moosbrugger, 2000).
The quasi-maximum likelihood (QML) approach (Klein & Muthén, 2007) (temporarily unavailable)
The constrained- unconstrained, residual- and double centering- approaches
are estimated via 'lavaan' (Rosseel, 2012), whilst the LMS- and QML- approaches
are estimated via by modsem it self. Alternatively model can be
estimated via 'Mplus' (Muthén & Muthén, 1998-2017).
References:
Algina, J., & Moulder, B. C. (2001).
<doi:10.1207/S15328007SEM0801_3>.
"A note on estimating the Jöreskog-Yang model for latent variable interaction using 'LISREL' 8 [...truncated...]
Author: Kjell Solem Slupphaug [aut, cre]
Maintainer: Kjell Solem Slupphaug <slupphaugkjell@gmail.com>
Diff between modsem versions 0.1.4 dated 2024-06-02 and 1.0.1 dated 2024-07-07
modsem-0.1.4/modsem/R/generics_lms_qml.R |only modsem-0.1.4/modsem/R/model_lms_qml.R |only modsem-0.1.4/modsem/R/modsem_lms_qml.R |only modsem-0.1.4/modsem/R/optimize_lms_qml.R |only modsem-0.1.4/modsem/R/utils_lms.R |only modsem-0.1.4/modsem/R/utils_qml.R |only modsem-0.1.4/modsem/data/theoryOfPlannedBehaviour.rda |only modsem-0.1.4/modsem/data/tripleInt.rda |only modsem-0.1.4/modsem/data/twoInt.rda |only modsem-0.1.4/modsem/man/figures/ModSEM.png |only modsem-0.1.4/modsem/man/modsem_lms_qml.Rd |only modsem-0.1.4/modsem/man/summaryLmsAndQml.Rd |only modsem-0.1.4/modsem/man/tracePath.Rd |only modsem-0.1.4/modsem/man/tripleInt.Rd |only modsem-0.1.4/modsem/man/twoInt.Rd |only modsem-0.1.4/modsem/src/QML.cpp |only modsem-1.0.1/modsem/DESCRIPTION | 10 modsem-1.0.1/modsem/MD5 | 194 +++-- modsem-1.0.1/modsem/NAMESPACE | 46 + modsem-1.0.1/modsem/R/RcppExports.R | 32 modsem-1.0.1/modsem/R/calc_se_da.R |only modsem-1.0.1/modsem/R/constraints_pi_ca.R | 20 modsem-1.0.1/modsem/R/construct_matrices_da.R |only modsem-1.0.1/modsem/R/cov_model.R |only modsem-1.0.1/modsem/R/datasets.R | 70 +- modsem-1.0.1/modsem/R/equations_lms.R | 192 +++-- modsem-1.0.1/modsem/R/equations_qml.R | 136 +++- modsem-1.0.1/modsem/R/est_lms.R | 151 +++- modsem-1.0.1/modsem/R/est_qml.R | 81 +- modsem-1.0.1/modsem/R/fit_modsem_da.R |only modsem-1.0.1/modsem/R/generics.R | 212 ++++++ modsem-1.0.1/modsem/R/generics_lavaan.R |only modsem-1.0.1/modsem/R/generics_modsem_da.R |only modsem-1.0.1/modsem/R/generics_modsem_mplus.R | 67 +- modsem-1.0.1/modsem/R/generics_modsem_pi.R | 38 + modsem-1.0.1/modsem/R/inspect_da.R |only modsem-1.0.1/modsem/R/labelled_params_da.R |only modsem-1.0.1/modsem/R/lav_syntax_functions.R | 10 modsem-1.0.1/modsem/R/lexer.R | 9 modsem-1.0.1/modsem/R/method_settings_da.R |only modsem-1.0.1/modsem/R/method_settings_pi.R | 122 ++- modsem-1.0.1/modsem/R/model_da.R |only modsem-1.0.1/modsem/R/model_pi.R | 44 - modsem-1.0.1/modsem/R/modsem.R | 91 +- modsem-1.0.1/modsem/R/modsem_da.R |only modsem-1.0.1/modsem/R/modsem_mplus.R | 80 +- modsem-1.0.1/modsem/R/modsem_pi.R | 359 +++++++---- modsem-1.0.1/modsem/R/optimize_da.R |only modsem-1.0.1/modsem/R/parser.R | 10 modsem-1.0.1/modsem/R/plot_interaction.R | 61 + modsem-1.0.1/modsem/R/print_partable.R |only modsem-1.0.1/modsem/R/residual_cov_pi.R | 8 modsem-1.0.1/modsem/R/run_multiple_models.R | 10 modsem-1.0.1/modsem/R/simulate_partable.R |only modsem-1.0.1/modsem/R/tokenizer.R | 39 - modsem-1.0.1/modsem/R/trace_paths_wright.R | 56 + modsem-1.0.1/modsem/R/utils.R |only modsem-1.0.1/modsem/R/utils_da.R |only modsem-1.0.1/modsem/R/utils_pi.R | 35 - modsem-1.0.1/modsem/README.md | 96 -- modsem-1.0.1/modsem/build/vignette.rds |binary modsem-1.0.1/modsem/data/TPB.rda |only modsem-1.0.1/modsem/data/TPB_UK.rda |only modsem-1.0.1/modsem/inst/doc/customizing.R | 36 - modsem-1.0.1/modsem/inst/doc/customizing.Rmd | 25 modsem-1.0.1/modsem/inst/doc/customizing.html | 67 +- modsem-1.0.1/modsem/inst/doc/interaction_two_etas.R |only modsem-1.0.1/modsem/inst/doc/interaction_two_etas.Rmd |only modsem-1.0.1/modsem/inst/doc/interaction_two_etas.html |only modsem-1.0.1/modsem/inst/doc/lavaan.R | 10 modsem-1.0.1/modsem/inst/doc/lavaan.Rmd | 14 modsem-1.0.1/modsem/inst/doc/lavaan.html | 12 modsem-1.0.1/modsem/inst/doc/lms_qml.R | 7 modsem-1.0.1/modsem/inst/doc/lms_qml.Rmd | 35 - modsem-1.0.1/modsem/inst/doc/lms_qml.html | 18 modsem-1.0.1/modsem/inst/doc/modsem.R | 43 - modsem-1.0.1/modsem/inst/doc/modsem.Rmd | 62 - modsem-1.0.1/modsem/inst/doc/modsem.html | 129 +-- modsem-1.0.1/modsem/inst/doc/observed_lms_qml.R |only modsem-1.0.1/modsem/inst/doc/observed_lms_qml.Rmd |only modsem-1.0.1/modsem/inst/doc/observed_lms_qml.html |only modsem-1.0.1/modsem/inst/doc/plot_interactions.R | 7 modsem-1.0.1/modsem/inst/doc/plot_interactions.Rmd | 7 modsem-1.0.1/modsem/inst/doc/plot_interactions.html | 26 modsem-1.0.1/modsem/man/TPB.Rd | 19 modsem-1.0.1/modsem/man/TPB_UK.Rd |only modsem-1.0.1/modsem/man/compare_fit.Rd |only modsem-1.0.1/modsem/man/default_settings_da.Rd |only modsem-1.0.1/modsem/man/default_settings_pi.Rd |only modsem-1.0.1/modsem/man/extract_lavaan.Rd |only modsem-1.0.1/modsem/man/figures/modsem.png |only modsem-1.0.1/modsem/man/fit_modsem_da.Rd |only modsem-1.0.1/modsem/man/get_pi_data.Rd |only modsem-1.0.1/modsem/man/get_pi_syntax.Rd |only modsem-1.0.1/modsem/man/jordan.Rd | 12 modsem-1.0.1/modsem/man/modsem-package.Rd | 2 modsem-1.0.1/modsem/man/modsem.Rd | 69 -- modsem-1.0.1/modsem/man/modsem_da.Rd |only modsem-1.0.1/modsem/man/modsem_inspect.Rd |only modsem-1.0.1/modsem/man/modsem_mplus.Rd | 24 modsem-1.0.1/modsem/man/modsem_pi.Rd | 73 +- modsem-1.0.1/modsem/man/parameter_estimates.Rd | 2 modsem-1.0.1/modsem/man/plot_interaction.Rd | 11 modsem-1.0.1/modsem/man/standardized_estimates.Rd |only modsem-1.0.1/modsem/man/summary.Rd | 126 +++ modsem-1.0.1/modsem/man/trace_path.Rd |only modsem-1.0.1/modsem/man/var_interactions.Rd |only modsem-1.0.1/modsem/src/QML.h | 8 modsem-1.0.1/modsem/src/RcppExports.cpp | 107 ++- modsem-1.0.1/modsem/src/equationsQML.cpp |only modsem-1.0.1/modsem/src/mvnorm.cpp |only modsem-1.0.1/modsem/src/mvnorm.h |only modsem-1.0.1/modsem/tests/testthat/mplusResults.out | 6 modsem-1.0.1/modsem/tests/testthat/test_get_pi_data_syntax.R |only modsem-1.0.1/modsem/tests/testthat/test_lms.R | 89 +- modsem-1.0.1/modsem/tests/testthat/test_multigroup.R | 2 modsem-1.0.1/modsem/tests/testthat/test_pathtracer.R |only modsem-1.0.1/modsem/tests/testthat/test_qml.R | 38 + modsem-1.0.1/modsem/tests/testthat/test_quadratic_effects.R | 15 modsem-1.0.1/modsem/tests/testthat/test_sam.R |only modsem-1.0.1/modsem/tests/testthat/test_syntax.R | 2 modsem-1.0.1/modsem/tests/testthat/test_tpb.R | 20 modsem-1.0.1/modsem/vignettes/customizing.Rmd | 25 modsem-1.0.1/modsem/vignettes/interaction_two_etas.Rmd |only modsem-1.0.1/modsem/vignettes/lavaan.Rmd | 14 modsem-1.0.1/modsem/vignettes/lms_qml.Rmd | 35 - modsem-1.0.1/modsem/vignettes/modsem.Rmd | 62 - modsem-1.0.1/modsem/vignettes/observed_lms_qml.Rmd |only modsem-1.0.1/modsem/vignettes/plot_interactions.Rmd | 7 129 files changed, 2265 insertions(+), 1280 deletions(-)
Title: Query, Pivot, Patch, and Validate 'JSON' and 'NDJSON'
Description: Functions to query (filter or transform), pivot (convert
from array-of-objects to object-of-arrays, for easy import as 'R'
data frame), search, patch (edit), and validate (against 'JSON Schema')
'JSON' and 'NDJSON' strings, files, or URLs. Query and
pivot support 'JSONpointer', 'JSONpath' or 'JMESpath'
expressions. The implementation uses the 'jsoncons'
<https://danielaparker.github.io/jsoncons/> header-only library;
the library is easily linked to other packages for direct access
to 'C++' functionality not implemented here.
Author: Martin Morgan [aut, cre] ,
Marcel Ramos [aut] ,
Daniel Parker [aut, cph]
Maintainer: Martin Morgan <mtmorgan.xyz@gmail.com>
Diff between rjsoncons versions 1.3.0 dated 2024-04-18 and 1.3.1 dated 2024-07-07
DESCRIPTION | 10 +- MD5 | 38 ++++----- NEWS.md | 8 + R/patch.R | 3 R/paths_and_pointer.R | 12 +- R/rquerypivot.R | 3 build/vignette.rds |binary inst/doc/a_rjsoncons.R | 3 inst/doc/a_rjsoncons.Rmd | 3 inst/doc/a_rjsoncons.html | 91 +++++++++++---------- inst/tinytest/test_as_r.R | 3 inst/tinytest/test_jsoncons.R | 100 ++++++++++++------------ inst/tinytest/test_patch.R | 162 ++++++++++++++++++++------------------- inst/tinytest/test_rquerypivot.R | 25 +++++- man/patch.Rd | 3 man/rquerypivot.Rd | 3 man/zzz_paths_and_pointer.Rd | 12 +- src/rquerypivot.h | 92 +++++++++------------- tests/tinytest.R | 3 vignettes/a_rjsoncons.Rmd | 3 20 files changed, 313 insertions(+), 264 deletions(-)
Title: Hydro-Meteorology Time-Series
Description: Functions for the management and treatment of hydrology and
meteorology time-series stored in a 'Sqlite' data base.
Author: Pierre Chevallier [aut, cre]
Maintainer: Pierre Chevallier <pierre.chevallier@mailo.com>
Diff between htsr versions 2.1.4 dated 2024-01-16 and 2.1.5 dated 2024-07-07
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++++------- R/d_convert_hubeau.R |only R/d_convert_meteofrance_h.R |only R/d_convert_weewx.R | 9 ++++++--- build/vignette.rds |binary inst/doc/htsr-package.Rmd | 8 +++++--- inst/doc/htsr-package.html | 12 ++++++++---- man/d_convert_hubeau.Rd |only man/d_convert_meteofrance_h.Rd |only man/d_convert_weewx.Rd | 13 +++++++++++-- vignettes/htsr-package.Rmd | 8 +++++--- 12 files changed, 51 insertions(+), 27 deletions(-)
Title: Cluster Analysis with Missing Values by Multiple Imputation
Description: Allows clustering of incomplete observations by addressing missing values using multiple imputation. For achieving this goal, the methodology consists in three steps, following Audigier and Niang 2022 <doi:10.1007/s11634-022-00519-1>. I) Missing data imputation using dedicated models. Four multiple imputation methods are proposed, two are based on joint modelling and two are fully sequential methods, as discussed in Audigier et al. (2021) <doi:10.48550/arXiv.2106.04424>. II) cluster analysis of imputed data sets. Six clustering methods are available (distances-based or model-based), but custom methods can also be easily used. III) Partition pooling. The set of partitions is aggregated using Non-negative Matrix Factorization based method. An associated instability measure is computed by bootstrap (see Fang, Y. and Wang, J., 2012 <doi:10.1016/j.csda.2011.09.003>). Among applications, this instability measure can be used to choose a number of clusters with missing value [...truncated...]
Author: Vincent Audigier [aut, cre] ,
Hang Joon Kim [ctb]
Maintainer: Vincent Audigier <vincent.audigier@cnam.fr>
Diff between clusterMI versions 1.2 dated 2024-07-04 and 1.2.1 dated 2024-07-07
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/chooser.R | 8 ++++++-- R/imputedata.R | 20 ++++++++++++++------ R/overimpute.R | 24 ++++++++++++++---------- man/chooser.Rd | 8 ++++++-- 6 files changed, 49 insertions(+), 29 deletions(-)
Title: Read Mouse Genome Informatics Reports
Description: Provides readers for easy and consistent importing of
Mouse Genome Informatics (MGI) report files:
<https://www.informatics.jax.org/downloads/reports/index.html>. These data
are provided by Baldarelli RM, Smith CL, Ringwald M, Richardson JE, Bult CJ,
Mouse Genome Informatics Group (2024) <doi:10.1093/genetics/iyae031>.
Author: Ramiro Magno [aut, cre] ,
David Shaw [aut] ,
Isabel Duarte [aut] ,
Ismail Gbadamosi [aut] ,
Ali Jawaid [aut] ,
Nencki Institute of Experimental Biology [fnd],
University of Algarve [fnd],
The Jackson Laboratory [fnd],
Pattern Institute [cph, fnd]
Maintainer: Ramiro Magno <rmagno@pattern.institute>
Diff between mgi.report.reader versions 0.1.2 dated 2024-07-05 and 0.1.3 dated 2024-07-07
mgi.report.reader-0.1.2/mgi.report.reader/man/convert_to_marker_id.Rd |only mgi.report.reader-0.1.2/mgi.report.reader/man/open_marker_in_mgi.Rd |only mgi.report.reader-0.1.2/mgi.report.reader/man/update_marker_symbol.Rd |only mgi.report.reader-0.1.3/mgi.report.reader/DESCRIPTION | 9 mgi.report.reader-0.1.3/mgi.report.reader/MD5 | 53 +- mgi.report.reader-0.1.3/mgi.report.reader/NAMESPACE | 8 mgi.report.reader-0.1.3/mgi.report.reader/NEWS.md | 14 mgi.report.reader-0.1.3/mgi.report.reader/R/browser.R | 53 +- mgi.report.reader-0.1.3/mgi.report.reader/R/crosswalks.R | 260 +++++----- mgi.report.reader-0.1.3/mgi.report.reader/R/docs.R | 35 - mgi.report.reader-0.1.3/mgi.report.reader/R/example.R |only mgi.report.reader-0.1.3/mgi.report.reader/R/marker_types.R | 30 + mgi.report.reader-0.1.3/mgi.report.reader/R/read_mrk_list1_rpt.R | 50 + mgi.report.reader-0.1.3/mgi.report.reader/R/report_source.R | 17 mgi.report.reader-0.1.3/mgi.report.reader/R/reports.R | 2 mgi.report.reader-0.1.3/mgi.report.reader/R/sysdata.rda |binary mgi.report.reader-0.1.3/mgi.report.reader/R/zzz.R |only mgi.report.reader-0.1.3/mgi.report.reader/data/marker_type_definitions.rda |only mgi.report.reader-0.1.3/mgi.report.reader/inst |only mgi.report.reader-0.1.3/mgi.report.reader/man/common-args.Rd | 2 mgi.report.reader-0.1.3/mgi.report.reader/man/marker_type_definitions.Rd |only mgi.report.reader-0.1.3/mgi.report.reader/man/marker_types.Rd | 3 mgi.report.reader-0.1.3/mgi.report.reader/man/open_marker_id_in_mgi.Rd |only mgi.report.reader-0.1.3/mgi.report.reader/man/open_marker_symbol_in_mgi.Rd |only mgi.report.reader-0.1.3/mgi.report.reader/man/read_symbol_map.Rd |only mgi.report.reader-0.1.3/mgi.report.reader/man/read_symbol_to_id_map.Rd |only mgi.report.reader-0.1.3/mgi.report.reader/man/report_example.Rd |only mgi.report.reader-0.1.3/mgi.report.reader/man/report_last_modified.Rd | 8 mgi.report.reader-0.1.3/mgi.report.reader/man/report_source.Rd | 9 mgi.report.reader-0.1.3/mgi.report.reader/man/reports.Rd | 2 mgi.report.reader-0.1.3/mgi.report.reader/man/symbol_to_identifier.Rd |only mgi.report.reader-0.1.3/mgi.report.reader/man/symbol_to_symbol.Rd |only mgi.report.reader-0.1.3/mgi.report.reader/tests/testthat/test-read_symbol_map.R |only mgi.report.reader-0.1.3/mgi.report.reader/tests/testthat/test-symbol_to_symbol.R |only 34 files changed, 358 insertions(+), 197 deletions(-)
More information about mgi.report.reader at CRAN
Permanent link
Title: Interface to the 'HDF5' Binary Data Format
Description: 'HDF5' is a data model, library and file format for storing
and managing large amounts of data. This package provides a nearly
feature complete, object oriented wrapper for the 'HDF5' API
<https://support.hdfgroup.org/HDF5/doc/RM/RM_H5Front.html> using R6 classes.
Additionally, functionality is added so that 'HDF5' objects behave very
similar to their corresponding R counterparts.
Author: Holger Hoefling [aut, cre],
Mario Annau [aut],
Novartis Institute for BioMedical Research [cph]
Maintainer: Holger Hoefling <hhoeflin@gmail.com>
Diff between hdf5r versions 1.3.10 dated 2024-03-02 and 1.3.11 dated 2024-07-07
DESCRIPTION | 6 MD5 | 127 ++++++------ NEWS.md | 9 R/Common_functions.R | 122 ++++++------ R/R6Classes.R | 2 R/R6Classes_H5A.R | 14 - R/R6Classes_H5D.R | 28 +- R/R6Classes_H5File.R | 10 - R/R6Classes_H5P.R | 142 +++++++------- R/R6Classes_H5R.R | 4 R/R6Classes_H5S.R | 48 ++-- R/R6Classes_H5T.R | 78 +++---- R/adapt_during_onLoad.R | 6 R/high_level_UI.R | 4 build/vignette.rds |binary inst/Release_checks.md |only inst/doc/hdf5r.Rmd | 2 inst/doc/hdf5r.html | 378 ++++++++++++++++++-------------------- man/H5A-class.Rd | 18 - man/H5D-class.Rd | 66 +++--- man/H5File-class.Rd | 122 ++++++------ man/H5Group-class.Rd | 112 +++++------ man/H5P-class.Rd | 8 man/H5P_ATTRIBUTE_CREATE-class.Rd | 4 man/H5P_CLASS-class.Rd | 2 man/H5P_DATASET_ACCESS-class.Rd | 4 man/H5P_DATASET_CREATE-class.Rd | 50 ++--- man/H5P_DATASET_XFER-class.Rd | 14 - man/H5P_FILE_ACCESS-class.Rd | 4 man/H5P_FILE_CREATE-class.Rd | 20 +- man/H5P_LINK_ACCESS-class.Rd | 12 - man/H5P_LINK_CREATE-class.Rd | 8 man/H5P_OBJECT_COPY-class.Rd | 4 man/H5P_OBJECT_CREATE-class.Rd | 12 - man/H5R_DATASET_REGION-class.Rd | 2 man/H5R_OBJECT-class.Rd | 2 man/H5RefClass-class.Rd | 12 - man/H5S-class.Rd | 50 ++--- man/H5S_H5D_subset_assign.Rd | 4 man/H5T-class.Rd | 73 +++---- man/H5T_ARRAY-class.Rd | 6 man/H5T_COMPOUND-class.Rd | 2 man/H5T_FLOAT-class.Rd | 16 - man/H5T_INTEGER-class.Rd | 4 man/H5T_STRING-class.Rd | 10 - man/H5T_VLEN-class.Rd | 2 man/text_to_dtype.Rd | 3 src/1_10_0/Wrapper_auto_H5A.c | 4 src/1_10_0/Wrapper_auto_H5D.c | 2 src/1_10_2/Wrapper_auto_H5A.c | 4 src/1_10_2/Wrapper_auto_H5D.c | 2 src/1_10_3/Wrapper_auto_H5A.c | 4 src/1_10_3/Wrapper_auto_H5D.c | 2 src/1_12_0/Wrapper_auto_H5A.c | 4 src/1_12_0/Wrapper_auto_H5D.c | 2 src/1_8_12/Wrapper_auto_H5A.c | 4 src/1_8_12/Wrapper_auto_H5D.c | 2 src/1_8_14/Wrapper_auto_H5A.c | 4 src/1_8_14/Wrapper_auto_H5D.c | 2 src/1_8_16/Wrapper_auto_H5A.c | 4 src/1_8_16/Wrapper_auto_H5D.c | 2 src/convert.c | 27 +- tests/testthat/test-convert.R | 1 tests/testthat/test-h5a.R | 72 +++++++ vignettes/hdf5r.Rmd | 2 65 files changed, 925 insertions(+), 845 deletions(-)
Title: Dependency Management with 'roxygen'-Style Comments
Description: Manage your source code dependencies
by decorating your existing R code with special,
'roxygen'-style comments.
Author: Peter Solymos [aut, cre] ,
Analythium Solutions Inc. [cph, fnd]
Maintainer: Peter Solymos <peter@analythium.io>
Diff between deps versions 0.3.0 dated 2024-05-21 and 0.4.0 dated 2024-07-07
DESCRIPTION | 6 ++--- MD5 | 8 +++---- NEWS.md | 5 ++++ R/utils.R | 61 ++++++++++++++++++++++++++++++++-------------------------- inst/WORDLIST | 1 5 files changed, 47 insertions(+), 34 deletions(-)
Title: Bayesian Global Vector Autoregressions
Description: Estimation of Bayesian Global Vector Autoregressions (BGVAR) with different prior setups and the possibility to introduce stochastic volatility. Built-in priors include the Minnesota, the stochastic search variable selection and Normal-Gamma (NG) prior. For a reference see also Crespo Cuaresma, J., Feldkircher, M. and F. Huber (2016) "Forecasting with Global Vector Autoregressive Models: a Bayesian Approach", Journal of Applied Econometrics, Vol. 31(7), pp. 1371-1391 <doi:10.1002/jae.2504>. Post-processing functions allow for doing predictions, structurally identify the model with short-run or sign-restrictions and compute impulse response functions, historical decompositions and forecast error variance decompositions. Plotting functions are also available. The package has a companion paper: Boeck, M., Feldkircher, M. and F. Huber (2022) "BGVAR: Bayesian Global Vector Autoregressions with Shrinkage Priors in R", Journal of Statistical Software, Vol. 104(9), pp. 1-28 <doi:10.18 [...truncated...]
Author: Maximilian Boeck [aut, cre] ,
Martin Feldkircher [aut] ,
Florian Huber [aut] ,
Darjus Hosszejni [ctb]
Maintainer: Maximilian Boeck <maximilian.boeck@unibocconi.it>
Diff between BGVAR versions 2.5.6 dated 2024-07-03 and 2.5.7 dated 2024-07-07
DESCRIPTION | 6 - MD5 | 10 +- inst/doc/examples.html | 172 ++++++++++++++++++++++++------------------------- src/BVAR_linear.cpp | 8 +- src/helper.cpp | 27 +++++++ src/helper.h | 2 6 files changed, 129 insertions(+), 96 deletions(-)
Title: Automatic Univariate Time Series Modelling of many Kinds
Description: Comprehensive analysis and forecasting
of univariate time series using automatic
time series models of many kinds.
Harvey AC (1989) <doi:10.1017/CBO9781107049994>.
Pedregal DJ and Young PC (2002) <doi:10.1002/9780470996430>.
Durbin J and Koopman SJ (2012) <doi:10.1093/acprof:oso/9780199641178.001.0001>.
Hyndman RJ, Koehler AB, Ord JK, and Snyder RD (2008) <doi:10.1007/978-3-540-71918-2>.
Gómez V, Maravall A (2000) <doi:10.1002/9781118032978>.
Pedregal DJ, Trapero JR and Holgado E (2024) <doi:10.1016/j.ijforecast.2023.09.004>.
Author: Diego J. Pedregal [aut, cre]
Maintainer: Diego J. Pedregal <Diego.Pedregal@uclm.es>
Diff between UComp versions 5.0.0 dated 2024-06-27 and 5.0.2 dated 2024-07-07
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 1 - src/ARIMAmodel.h | 17 +++++++++-------- src/stats.h | 6 +++--- 5 files changed, 20 insertions(+), 20 deletions(-)
Title: A General-Purpose Package for Dynamic Report Generation in R
Description: Provides a general-purpose tool for dynamic report generation in R
using Literate Programming techniques.
Author: Yihui Xie [aut, cre] ,
Abhraneel Sarma [ctb],
Adam Vogt [ctb],
Alastair Andrew [ctb],
Alex Zvoleff [ctb],
Amar Al-Zubaidi [ctb],
Andre Simon [ctb] ,
Aron Atkins [ctb],
Aaron Wolen [ctb],
Ashley Manton [ctb],
Atsushi Yasumoto [ctb] ,
Ben Baumer [ctb], [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between knitr versions 1.47 dated 2024-05-29 and 1.48 dated 2024-07-07
DESCRIPTION | 8 ++++---- MD5 | 34 +++++++++++++++++----------------- R/hooks-extra.R | 1 + R/hooks-md.R | 2 +- R/output.R | 2 +- R/utils.R | 4 ++-- inst/doc/datatables.html | 2 +- inst/doc/docco-classic.html | 6 +++--- inst/doc/knit_expand.html | 2 +- inst/doc/knit_print.html | 25 ++++++++++--------------- inst/doc/knitr-html.html | 14 +++++++------- inst/doc/knitr-intro.html | 10 +++++----- inst/doc/knitr-markdown.html | 13 +++++-------- inst/doc/knitr-refcard.pdf |binary man/combine_words.Rd | 2 +- man/image_uri.Rd | 2 +- man/sew.Rd | 2 +- tests/testit/test-plot.R | 2 +- 18 files changed, 62 insertions(+), 69 deletions(-)
Title: Efficient Rolling / Windowed Operations
Description: Provides fast and efficient routines for
common rolling / windowed operations. Routines for the
efficient computation of windowed mean, median,
sum, product, minimum, maximum, standard deviation
and variance are provided.
Author: Kevin Ushey
Maintainer: Kevin Ushey <kevinushey@gmail.com>
Diff between RcppRoll versions 0.3.0 dated 2018-06-05 and 0.3.1 dated 2024-07-07
DESCRIPTION | 7 +++---- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ README.md | 10 ++++++++-- src/RcppExports.cpp | 5 +++++ src/RcppRoll.cpp | 23 +++++++++++++++++++---- tests/testthat/test-zoo.R | 27 ++++++++++++++++++++++----- 7 files changed, 69 insertions(+), 21 deletions(-)
Title: Spatial and Spatiotemporal Relative Risk
Description: Provides functions to estimate kernel-smoothed spatial and spatio-temporal densities and relative risk functions, and perform subsequent inference. Methodological details can be found in the accompanying tutorial: Davies et al. (2018) <DOI:10.1002/sim.7577>.
Author: Tilman M. Davies [aut, cre],
Jonathan C. Marshall [aut]
Maintainer: Tilman M. Davies <tilman.davies@otago.ac.nz>
Diff between sparr versions 2.3-10 dated 2023-03-08 and 2.3-15 dated 2024-07-07
DESCRIPTION | 14 +++--- MD5 | 82 ++++++++++++++++++++-------------------- NAMESPACE | 3 + R/BAM.single.R | 10 ++-- R/BOOT.density.R | 8 +-- R/LSCV.density.R | 2 R/LSCV.density.spatial.single.R | 4 - R/LSCV.risk.single.R | 6 +- R/SLIK.adapt.R | 2 R/adens.R | 2 R/bivariate.density.R | 11 ++--- R/bivden.LOO.R | 4 - R/boot.opt.spatial.adapt.R | 4 - R/burk-data.R | 3 - R/fmd-data.R | 5 +- R/ms.loo.R | 6 +- R/multiscale.density.R | 6 +- R/package.R | 12 ++++- R/plot.msden.R | 6 ++ R/plot.rrst.R | 6 ++ R/plot.stden.R | 6 ++ R/rimpoly.R | 3 - R/risk.R | 7 +-- R/spattemp.density.R | 4 - R/spattemp.risk.R | 2 R/spattemp.slice.R | 6 +- R/tol.asy.ada.R | 2 R/tol.classify.R |only R/tol.classplot.R |only R/tolerance.R | 10 ++-- README.md | 6 +- man/CV.Rd | 2 man/SLIK.adapt.Rd | 2 man/bivariate.density.Rd | 7 +-- man/burk.Rd | 3 - man/fmd.Rd | 5 +- man/rimpoly.Rd | 3 - man/risk.Rd | 3 - man/sparr-package.Rd | 21 +++++++++- man/spattemp.risk.Rd | 3 - man/spattemp.slice.Rd | 6 +- man/tol.classify.Rd |only man/tol.classplot.Rd |only man/tolerance.Rd | 8 ++- 44 files changed, 185 insertions(+), 120 deletions(-)
Title: qPCR Data Analysis
Description: Various methods are employed for statistical analysis and graphical presentation of real-time PCR (quantitative PCR or qPCR) data. 'rtpcr' handles amplification efficiency calculation, statistical analysis and graphical representation of real-time PCR data based on up to two reference genes. By accounting for amplification efficiency values, 'rtpcr' was developed using a general calculation method described by Ganger et al. (2017) <doi:10.1186/s12859-017-1949-5> and Taylor et al. (2019) <doi:10.1016/j.tibtech.2018.12.002>, covering both the Livak and Pfaffl methods. Based on the experimental conditions, the functions of the 'rtpcr' package use t-test (for experiments with a two-level factor), analysis of variance (ANOVA), analysis of covariance (ANCOVA) or analysis of repeated measure data to calculate the fold change (FC, Delta Delta Ct method) or relative expression (RE, Delta Ct method). The functions further provide standard errors and confidence intervals for means, a [...truncated...]
Author: Ghader Mirzaghaderi [aut, cre, cph]
Maintainer: Ghader Mirzaghaderi <gh.mirzaghaderi@uok.ac.ir>
Diff between rtpcr versions 1.0.9 dated 2024-05-30 and 2.0.0 dated 2024-07-07
DESCRIPTION | 6 ++--- MD5 | 16 ++++++------- R/efficiency.r | 58 +++++++++++++++++++++++++++---------------------- R/qpcrANOVAFC.r | 2 - R/qpcrANOVARE.r | 8 ++---- R/qpcrREPEATED.r | 3 -- R/qpcrTTEST.r | 47 +++++++++++++++++++++++---------------- R/qpcrTTESTplot.r | 2 - inst/doc/vignette.html | 44 ++++++++++++++++++------------------- 9 files changed, 99 insertions(+), 87 deletions(-)
Title: Use 'QGIS' Processing Algorithms
Description: Provides seamless access to the 'QGIS'
(<https://qgis.org/en/site/>) processing toolbox using the standalone
'qgis_process' command-line utility. Both native and third-party
(plugin) processing providers are supported. Beside referring data
sources from file, also common objects from 'sf', 'terra' and 'stars'
are supported. The native processing algorithms are documented by QGIS.org
(2024) <https://docs.qgis.org/latest/en/docs/user_manual/processing_algs/>.
Author: Dewey Dunnington [aut] ,
Floris Vanderhaeghe [aut, cre]
),
Jan Caha [aut] ,
Jannes Muenchow [aut] ,
Antony Barja [ctb] ,
Robin Lovelace [ctb] ,
Jakub Nowosad [ctb] ,
Research Institute for Nature and Forest [cph, fnd]
Maintainer: Floris Vanderhaeghe <floris.vanderhaeghe@inbo.be>
Diff between qgisprocess versions 0.3.0 dated 2024-02-06 and 0.4.0 dated 2024-07-07
DESCRIPTION | 10 - MD5 | 59 +++--- NEWS.md | 18 ++ R/qgis-algorithms.R | 8 R/qgis-help.R | 9 - R/qgis-plugins.R | 50 ++++- R/qgis-run-algorithm.R | 23 +- R/qgis-state.R | 2 README.md | 31 ++- build/vignette.rds |binary inst/CITATION | 4 inst/doc/options.R |only inst/doc/options.Rmd |only inst/doc/options.html |only inst/doc/qgis_arguments.R |only inst/doc/qgis_arguments.Rmd |only inst/doc/qgis_arguments.html |only inst/doc/qgis_expressions.R | 5 inst/doc/qgis_expressions.Rmd | 2 inst/doc/qgis_expressions.html | 119 +++++-------- inst/doc/qgisprocess.R | 19 +- inst/doc/qgisprocess.Rmd | 4 inst/doc/qgisprocess.html | 260 ++++++++++++++---------------- man/qgis_run_algorithm.Rd | 24 +- man/vignette_childs/_qgis_arguments.Rmd |only man/vignette_childs/_qgis_expressions.Rmd | 5 man/vignette_childs/_qgisprocess.Rmd | 42 +++- tests/testthat/test-qgis-algorithms.R | 8 tests/testthat/test-qgis-arguments.R | 7 tests/testthat/test-qgis-plugins.R | 55 +++++- tests/testthat/test-qgis-run-algorithm.R | 9 - vignettes/options.Rmd |only vignettes/qgis_arguments.Rmd |only vignettes/qgis_expressions.Rmd | 2 vignettes/qgisprocess.Rmd | 4 35 files changed, 454 insertions(+), 325 deletions(-)
Title: Read, Write and Edit 'xlsx' Files
Description: Simplifies the creation of 'xlsx' files by
providing a high level interface to writing, styling and editing
worksheets.
Author: Jordan Mark Barbone [aut] ,
Jan Marvin Garbuszus [aut, cre],
Oliver Roy [ctb],
openxlsx authors [cph] ,
Arseny Kapoulkine [ctb, cph]
Maintainer: Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>
Diff between openxlsx2 versions 1.7 dated 2024-06-02 and 1.8 dated 2024-07-07
DESCRIPTION | 8 MD5 | 106 +-- NEWS.md | 29 + R/RcppExports.R | 4 R/baseXML.R | 8 R/class-comment.R | 28 - R/class-style_mgr.R | 2 R/class-workbook-wrappers.R | 8 R/class-workbook.R | 136 ++-- R/class-worksheet.R | 7 R/conditional_formatting.R | 97 ++- R/dates.R | 12 R/deprecate.R |only R/read.R | 10 R/utils.R | 151 ++++- R/wb_functions.R | 75 +- R/wb_load.R | 172 ++++++ R/write.R | 41 - R/write_xlsx.R | 13 build/vignette.rds |binary inst/doc/openxlsx2_formulas_manual.html | 40 - man/comment_internal.Rd | 156 ++--- man/convertToExcelDate.Rd | 28 - man/is_dims.Rd |only man/wbWorkbook.Rd | 3 man/wb_add_conditional_formatting.Rd | 6 man/wb_cell_style.Rd | 2 man/wb_to_df.Rd | 5 man/write_data.Rd | 2 man/write_datatable.Rd | 240 ++++---- man/write_formula.Rd | 6 src/RcppExports.cpp | 9 src/helper_functions.cpp | 67 +- src/strings_xml.cpp | 5 src/xlsb.cpp | 624 +++++++++++++++++++--- src/xlsb_defines.h | 59 ++ src/xlsb_funs.h | 750 +++++++++++++++++++++------ tests/testthat/test-class-comment.R | 20 tests/testthat/test-class-workbook.R | 13 tests/testthat/test-conditional_formatting.R | 127 ++++ tests/testthat/test-outlines.R | 2 tests/testthat/test-page_setup.R | 12 tests/testthat/test-pugi_cpp.R | 12 tests/testthat/test-pugixml.R | 4 tests/testthat/test-read_from_created_wb.R | 20 tests/testthat/test-read_sources.R | 21 tests/testthat/test-read_xlsb.R | 84 ++- tests/testthat/test-save.R | 2 tests/testthat/test-strings_xml.R | 3 tests/testthat/test-tables.R | 20 tests/testthat/test-utils.R | 66 ++ tests/testthat/test-wb_functions.R | 11 tests/testthat/test-wb_styles.R | 24 tests/testthat/test-write.R | 18 tests/testthat/test-writing_posixct.R | 2 55 files changed, 2499 insertions(+), 871 deletions(-)
Title: Fuzzy Statistical Tools
Description: The main goal of this package is to present various fuzzy statistical tools. It intends to provide an implementation of the theoretical and empirical approaches presented in the book entitled "The signed distance measure in fuzzy statistical analysis. Some theoretical, empirical and programming advances" <doi: 10.1007/978-3-030-76916-1>. For the theoretical approaches, see Berkachy R. and Donze L. (2019) <doi:10.1007/978-3-030-03368-2_1>. For the empirical approaches, see Berkachy R. and Donze L. (2016) <ISBN: 978-989-758-201-1>). Important (non-exhaustive) implementation highlights of this package are as follows: (1) a numerical procedure to estimate the fuzzy difference and the fuzzy square. (2) two numerical methods of fuzzification. (3) a function performing different possibilities of distances, including the signed distance and the generalized signed distance for instance with all its properties. (4) numerical estimations of fuzzy statistical measures such as the [...truncated...]
Author: Redina Berkachy <redina.berkachy@unifr.ch>, Laurent Donze <laurent.donze@unifr.ch>
Maintainer: Redina Berkachy <redina.berkachy@hefr.ch>
Diff between FuzzySTs versions 0.2 dated 2020-11-23 and 0.3 dated 2024-07-07
DESCRIPTION | 14 MD5 | 27 - NEWS.md |only R/FANOVA_07122018.R | 4 build/vignette.rds |binary inst/doc/Vignette_A.R | 2 inst/doc/Vignette_A.html | 560 ++++++++++++++++++++--------------- inst/doc/Vignette_B.R | 2 inst/doc/Vignette_B.html | 474 +++++++++++++++++------------- inst/doc/Vignette_C.R | 2 inst/doc/Vignette_C.html | 589 ++++++++++++++++++++----------------- inst/doc/Vignette_D.R | 2 inst/doc/Vignette_D.html | 732 +++++++++++++++++++++++++---------------------- inst/doc/Vignette_E.R | 2 inst/doc/Vignette_E.html | 556 ++++++++++++++++++++--------------- 15 files changed, 1684 insertions(+), 1282 deletions(-)
Title: Beta Regression
Description: Beta regression for modeling beta-distributed dependent variables on the open unit interval (0, 1),
e.g., rates and proportions, see Cribari-Neto and Zeileis (2010) <doi:10.18637/jss.v034.i02>.
Moreover, extended-support beta regression models can accommodate dependent variables with
boundary observations at 0 and/or 1. For the classical beta regression model, alternative specifications are
provided: Bias-corrected and bias-reduced estimation, finite mixture models, and recursive partitioning for
beta regression, see Grün, Kosmidis, and Zeileis (2012) <doi:10.18637/jss.v048.i11>.
Author: Achim Zeileis [aut, cre] ,
Francisco Cribari-Neto [aut] ,
Bettina Gruen [aut] ,
Ioannis Kosmidis [aut] ,
Alexandre B. Simas [ctb] ,
Andrea V. Rocha [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between betareg versions 3.1-4 dated 2021-02-09 and 3.2-0 dated 2024-07-07
betareg-3.1-4/betareg/NEWS |only betareg-3.1-4/betareg/R/make.dmu.deta.R |only betareg-3.2-0/betareg/DESCRIPTION | 48 betareg-3.2-0/betareg/MD5 | 108 betareg-3.2-0/betareg/NAMESPACE | 118 betareg-3.2-0/betareg/NEWS.md |only betareg-3.2-0/betareg/R/beta01.R |only betareg-3.2-0/betareg/R/beta4.R |only betareg-3.2-0/betareg/R/betamix.R | 4 betareg-3.2-0/betareg/R/betar.R |only betareg-3.2-0/betareg/R/betareg.R | 2257 ++++++++------ betareg-3.2-0/betareg/R/betatree.R | 4 betareg-3.2-0/betareg/R/hypergeo3F2.R |only betareg-3.2-0/betareg/R/leverage.R | 56 betareg-3.2-0/betareg/R/make.d2mu.deta.R |only betareg-3.2-0/betareg/R/plot.betareg.R | 44 betareg-3.2-0/betareg/R/xbeta.R |only betareg-3.2-0/betareg/R/xbetax.R |only betareg-3.2-0/betareg/README.md |only betareg-3.2-0/betareg/build/partial.rdb |binary betareg-3.2-0/betareg/build/vignette.rds |binary betareg-3.2-0/betareg/data/CarTask.rda |binary betareg-3.2-0/betareg/data/FoodExpenditure.rda |binary betareg-3.2-0/betareg/data/GasolineYield.rda |binary betareg-3.2-0/betareg/data/ImpreciseTask.rda |binary betareg-3.2-0/betareg/data/LossAversion.rda |only betareg-3.2-0/betareg/data/MockJurors.rda |binary betareg-3.2-0/betareg/data/ReadingSkills.rda |binary betareg-3.2-0/betareg/data/StressAnxiety.rda |binary betareg-3.2-0/betareg/data/WeatherTask.rda |binary betareg-3.2-0/betareg/inst/CITATION | 24 betareg-3.2-0/betareg/inst/doc/betareg-ext.pdf |binary betareg-3.2-0/betareg/inst/doc/betareg.pdf |binary betareg-3.2-0/betareg/man/Beta01.Rd |only betareg-3.2-0/betareg/man/Beta4.Rd |only betareg-3.2-0/betareg/man/BetaR.Rd |only betareg-3.2-0/betareg/man/CarTask.Rd | 2 betareg-3.2-0/betareg/man/FoodExpenditure.Rd | 2 betareg-3.2-0/betareg/man/GasolineYield.Rd | 2 betareg-3.2-0/betareg/man/ImpreciseTask.Rd | 2 betareg-3.2-0/betareg/man/LossAversion.Rd |only betareg-3.2-0/betareg/man/MockJurors.Rd | 2 betareg-3.2-0/betareg/man/ReadingSkills.Rd | 53 betareg-3.2-0/betareg/man/StressAnxiety.Rd | 2 betareg-3.2-0/betareg/man/WeatherTask.Rd | 2 betareg-3.2-0/betareg/man/XBeta.Rd |only betareg-3.2-0/betareg/man/XBetaX.Rd |only betareg-3.2-0/betareg/man/betamix.Rd | 18 betareg-3.2-0/betareg/man/betareg.Rd | 131 betareg-3.2-0/betareg/man/betareg.control.Rd | 14 betareg-3.2-0/betareg/man/betatree.Rd | 6 betareg-3.2-0/betareg/man/dbeta01.Rd |only betareg-3.2-0/betareg/man/dbeta4.Rd |only betareg-3.2-0/betareg/man/dbetar.Rd |only betareg-3.2-0/betareg/man/dxbeta.Rd |only betareg-3.2-0/betareg/man/dxbetax.Rd |only betareg-3.2-0/betareg/man/figures |only betareg-3.2-0/betareg/man/plot.betareg.Rd | 2 betareg-3.2-0/betareg/man/predict.betareg.Rd | 22 betareg-3.2-0/betareg/man/residuals.betareg.Rd | 49 betareg-3.2-0/betareg/man/summary.betareg.Rd | 6 betareg-3.2-0/betareg/src |only betareg-3.2-0/betareg/tests/Examples/betareg-Ex.Rout.save | 664 +++- betareg-3.2-0/betareg/tests/betamix.Rout.save | 6 betareg-3.2-0/betareg/tests/betatree.Rout.save | 10 betareg-3.2-0/betareg/vignettes/betareg-ext.Rout.save | 4 betareg-3.2-0/betareg/vignettes/betareg.Rout.save | 10 67 files changed, 2412 insertions(+), 1260 deletions(-)
Title: Relational Data Modeler
Description: The aim of this package is to manipulate relational
data models in R.
It provides functions to create, modify and export data models
in json format.
It also allows importing models created
with 'MySQL Workbench' (<https://www.mysql.com/products/workbench/>).
These functions are accessible through a graphical user
interface made with 'shiny'.
Constraints such as types, keys, uniqueness and mandatory fields are
automatically checked and corrected when editing a model.
Finally, real data can be confronted to a model to check their compatibility.
Author: Patrice Godard [aut, cre, cph],
Kai Lin [ctb]
Maintainer: Patrice Godard <patrice.godard@gmail.com>
Diff between ReDaMoR versions 0.7.4 dated 2024-02-07 and 0.7.6 dated 2024-07-07
DESCRIPTION | 15 +++++++++---- MD5 | 22 ++++++++++---------- NAMESPACE | 1 R/RelDataModel.R | 2 - R/RelTableModel.R | 4 +-- R/namespace.R | 2 - build/vignette.rds |binary inst/doc/ReDaMoR.Rmd | 6 ++--- inst/doc/ReDaMoR.html | 55 ++++++++++++++++++++++++++++++++++---------------- inst/pkgdown.yml | 6 ++--- man/confront_data.Rd | 2 - vignettes/ReDaMoR.Rmd | 6 ++--- 12 files changed, 74 insertions(+), 47 deletions(-)
Title: Inhomogeneous K- And Pair Correlation Functions Using Global
Estimators
Description: Second-order summary statistics K- and pair-correlation functions describe
interactions in point pattern data. This package provides computations to estimate those
statistics on inhomogeneous point processes, using the methods of
in T Shaw, J Møller, R Waagepetersen, 2020 <doi:10.48550/arXiv.2004.00527>.
Author: Thomas Shaw [aut, cre],
Ege Rubak [ctb],
Adrian Baddeley [ctb],
Rolf Turner [ctb]
Maintainer: Thomas Shaw <tshaw20@utk.edu>
Diff between globalKinhom versions 0.1.7 dated 2023-12-12 and 0.1.8 dated 2024-07-07
DESCRIPTION | 16 - MD5 | 16 - NAMESPACE | 3 build/partial.rdb |binary man/Kfuncs.Rd | 23 + man/expected_pairs.Rd | 9 man/globalKinhom-package.Rd | 10 man/pcfs.Rd | 28 +- tests/tests.Rout.save | 614 +++++++++++++++++++++----------------------- 9 files changed, 365 insertions(+), 354 deletions(-)
Title: Display Idiomatic Code to Construct Most R Objects
Description: Prints code that can be used to recreate R objects. In a
sense it is similar to 'base::dput()' or 'base::deparse()' but
'constructive' strives to use idiomatic constructors.
Author: Antoine Fabri [aut, cre],
Kirill Mueller [ctb]
Maintainer: Antoine Fabri <antoine.fabri@gmail.com>
Diff between constructive versions 1.0.0 dated 2024-07-02 and 1.0.1 dated 2024-07-07
constructive-1.0.0/constructive/R/s3-ggplot2-simpleUnit.R |only constructive-1.0.1/constructive/DESCRIPTION | 6 constructive-1.0.1/constructive/MD5 | 40 - constructive-1.0.1/constructive/NEWS.md | 10 constructive-1.0.1/constructive/R/bypass.R | 7 constructive-1.0.1/constructive/R/construct-helpers.R | 6 constructive-1.0.1/constructive/R/deparse_call.R | 13 constructive-1.0.1/constructive/R/deparse_helpers.R | 7 constructive-1.0.1/constructive/R/format_atomic.R | 1 constructive-1.0.1/constructive/R/s3-atomic.R | 2 constructive-1.0.1/constructive/R/s3-ggplot2-CoordCartesian.R | 2 constructive-1.0.1/constructive/R/s3-ggplot2-ScalesList.R | 2 constructive-1.0.1/constructive/R/s3-ggplot2-ggplot.R | 2 constructive-1.0.1/constructive/R/s3-simpleUnit.R |only constructive-1.0.1/constructive/inst/doc/extend-constructive.Rmd | 14 constructive-1.0.1/constructive/inst/doc/extend-constructive.html | 212 +++++----- constructive-1.0.1/constructive/inst/new_class_template_commented.R | 2 constructive-1.0.1/constructive/man/other-opts.Rd | 14 constructive-1.0.1/constructive/tests/testthat/_snaps/deparse_call.md | 23 + constructive-1.0.1/constructive/tests/testthat/_snaps/s3-simpleUnit.md |only constructive-1.0.1/constructive/tests/testthat/test-deparse_call.R | 11 constructive-1.0.1/constructive/tests/testthat/test-s3-simpleUnit.R |only constructive-1.0.1/constructive/vignettes/extend-constructive.Rmd | 14 23 files changed, 232 insertions(+), 156 deletions(-)
Title: Mathematical Formulas and Character Recognition
Description: By calling the 'SimpleTex' <https://simpletex.cn/> open API implements
text and mathematical formula recognition on the image, and the output formula
can be used directly with 'Markdown' and 'LaTeX'.
Author: Xinyuan Chu [aut, cre]
Maintainer: Xinyuan Chu <chuxinyuan@outlook.com>
Diff between simpletex versions 1.0.3 dated 2024-06-27 and 1.0.4 dated 2024-07-07
DESCRIPTION | 8 +- LICENSE | 4 - MD5 | 16 ++-- R/imgocr.R | 168 ++++++++++++++++++++++++------------------------ README.md | 4 - build/vignette.rds |binary inst/doc/simpletex.Rmd | 6 - inst/doc/simpletex.html | 9 +- vignettes/simpletex.Rmd | 6 - 9 files changed, 111 insertions(+), 110 deletions(-)
Title: Multivariate Ordinal Regression Models
Description: A flexible framework for fitting multivariate
ordinal regression models with composite likelihood methods. Methodological details are given in Hirk, Hornik, Vana (2020) <doi:10.18637/jss.v093.i04>.
Author: Rainer Hirk [aut, cre],
Kurt Hornik [aut],
Laura Vana [aut],
Alan Genz [ctb]
Maintainer: Laura Vana <laura.vana@tuwien.ac.at>
Diff between mvord versions 1.2.2 dated 2024-02-27 and 1.2.4 dated 2024-07-07
DESCRIPTION | 8 MD5 | 42 NAMESPACE | 29 NEWS | 6 R/error_struct.R | 1816 +++++++++++++++++----------------- R/fit_fast.R | 1 R/mvord.R | 2205 +++++++++++++++++++++--------------------- R/utilities.R | 1730 ++++++++++++++++---------------- build/partial.rdb |binary build/vignette.rds |binary data/data_cr.rda |binary data/data_cr_panel.rda |binary data/data_mvord.rda |binary data/data_mvord2.rda |binary data/data_mvord_panel.rda |binary data/data_mvord_toy.rda |binary data/essay_data.rda |binary inst/doc/vignette_mvord.pdf |binary inst/doc/vignette_mvord2.html | 241 ++-- man/mvord.control.Rd | 4 tests/check_methods.R | 4 tests/check_toy_example.R | 530 +++++----- 22 files changed, 3340 insertions(+), 3276 deletions(-)
Title: Automated Tool for Vertical Fuel Continuity Analysis using
Airborne Laser Scanning Data
Description: Set of tools for analyzing vertical fuel continuity at the tree level using Airborne Laser Scanning data. The workflow consisted of: 1) calculating the vertical height profiles of each segmented tree; 2) identifying gaps and fuel layers; 3) estimating the distance between fuel layers; and 4) retrieving the fuel layers base height and depth. Additionally, other functions recalculate previous metrics after considering distances greater than certain threshold. Moreover, the package calculates: i) the percentage of Leaf Area Density comprised in each fuel layer, ii) remove fuel layers with Leaf Area Density (LAD) percentage less than 10, and iii) recalculate the distances among the reminder ones. On the other hand, it identifies the crown base height (CBH) based on different criteria: the fuel layer with the highest LAD percentage and the fuel layers located at the largest- and at the last-distance. When there is only one fuel layer, it also identifies the CBH performing a segmented linear [...truncated...]
Author: Olga Viedma [aut, cph, cre],
Carlos Alberto Silva [aut, cph],
Jose Manuel Moreno [aut, cph],
Andrew T. Hudak [aut, cph]
Maintainer: Olga Viedma <olga.viedma@uclm.es>
Diff between LadderFuelsR versions 0.0.4 dated 2024-03-18 and 0.0.5 dated 2024-07-07
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Title: Conditional Distance Correlation Based Feature Screening and
Conditional Independence Inference
Description: Conditional distance correlation <doi:10.1080/01621459.2014.993081> is a novel conditional dependence measurement of two multivariate random variables given a confounding variable. This package provides conditional distance correlation, performs the conditional distance correlation sure independence screening procedure for ultrahigh dimensional data <https://www3.stat.sinica.edu.tw/statistica/J28N1/J28N114/J28N114.html>, and conducts conditional distance covariance test for conditional independence assumption of two multivariate variable.
Author: Wenhao Hu, Mian Huang, Wenliang Pan, Xueqin Wang, Canhong Wen, Yuan Tian, Heping Zhang, Jin Zhu
Maintainer: Jin Zhu <zhuj37@mail2.sysu.edu.cn>
Diff between cdcsis versions 2.0.3 dated 2019-07-10 and 2.0.4 dated 2024-07-07
DESCRIPTION | 12 MD5 | 42 +-- NAMESPACE | 28 +- NEWS.md | 35 +- R/RcppExports.R | 14 - R/cdcov.R | 538 ++++++++++++++++++++--------------------- R/cdcsis-package.R | 24 - R/cdcsis.R | 207 +++++++-------- R/utility.R | 218 ++++++++-------- README.md | 76 ++--- man/cdcov.Rd | 136 +++++----- man/cdcov.test.Rd | 195 +++++++------- man/cdcsis-package.Rd | 40 +-- man/cdcsis.Rd | 168 ++++++------ src/Makevars | 1 src/Makevars.win | 1 src/kde.cpp | 4 src/kde.h | 2 tests/testthat.R | 8 tests/testthat/test_cdc_test.R | 88 +++--- tests/testthat/test_cdcsis.R | 58 ++-- tests/testthat/test_stats.R | 24 - 22 files changed, 967 insertions(+), 952 deletions(-)