Title: 'Arrow' Database Connectivity ('ADBC') 'SQLite' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'SQLite' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcsqlite versions 0.12.0 dated 2024-05-22 and 0.13.0 dated 2024-07-08
DESCRIPTION | 6 MD5 | 14 - src/c/driver/common/utils.c | 6 src/c/driver/framework/objects.cc | 54 ++-- src/c/driver/sqlite/statement_reader.c | 6 src/c/vendor/nanoarrow/nanoarrow.c | 105 ++++++-- src/c/vendor/nanoarrow/nanoarrow.h | 171 +++++++++---- src/c/vendor/nanoarrow/nanoarrow.hpp | 415 ++++++++++++++++++++++++++++++++- 8 files changed, 657 insertions(+), 120 deletions(-)
Title: Statistical Methods for Psychologists
Description: Implements confidence interval and sample size methods that are especially useful in psychological research. The methods can be applied in 1-group, 2-group, paired-samples, and multiple-group designs and to a variety of parameters including means, medians, proportions, slopes, standardized mean differences, standardized linear contrasts of means, plus several measures of correlation and association. The confidence intervals and sample size functions are applicable to single parameters as well as differences, ratios, and linear contrasts of parameters. The sample size functions can be used to approximate the sample size needed to estimate a parameter or function of parameters with desired confidence interval precision or to perform a variety of hypothesis tests (directional two-sided, equivalence, superiority, noninferiority) with desired power. For details see: Statistical Methods for Psychologists, Volumes 1 – 4, <https://dgbonett.sites.ucsc.edu/>.
Author: Douglas G. Bonett [aut, cre],
Robert J. Calin-Jageman [ctb]
Maintainer: Douglas G. Bonett <dgbonett@ucsc.edu>
Diff between statpsych versions 1.5.0 dated 2023-12-20 and 1.6.0 dated 2024-07-08
statpsych-1.5.0/statpsych/man/ci.bayes.prop1.Rd |only statpsych-1.5.0/statpsych/man/ci.cod1.Rd |only statpsych-1.5.0/statpsych/man/ci.cod2.Rd |only statpsych-1.5.0/statpsych/man/ci.cqv1.Rd |only statpsych-1.5.0/statpsych/man/ci.cv1.Rd |only statpsych-1.5.0/statpsych/man/ci.mad1.Rd |only statpsych-1.5.0/statpsych/man/ci.mape1.Rd |only statpsych-1.5.0/statpsych/man/ci.mape2.Rd |only statpsych-1.5.0/statpsych/man/ci.mean1.Rd |only statpsych-1.5.0/statpsych/man/ci.median1.Rd |only statpsych-1.5.0/statpsych/man/ci.pairs.prop1.Rd |only statpsych-1.5.0/statpsych/man/ci.prop1.Rd |only statpsych-1.5.0/statpsych/man/ci.prop1.inv.Rd |only statpsych-1.5.0/statpsych/man/ci.random.anova1.Rd |only statpsych-1.5.0/statpsych/man/ci.sign1.Rd |only statpsych-1.5.0/statpsych/man/ci.stdmean1.Rd |only statpsych-1.5.0/statpsych/man/pi.score1.Rd |only statpsych-1.5.0/statpsych/man/power.cor1.Rd |only statpsych-1.5.0/statpsych/man/power.mean1.Rd |only statpsych-1.5.0/statpsych/man/power.prop1.Rd |only statpsych-1.5.0/statpsych/man/sim.ci.mean1.Rd |only statpsych-1.5.0/statpsych/man/sim.ci.median1.Rd |only statpsych-1.5.0/statpsych/man/size.ci.mape1.Rd |only statpsych-1.5.0/statpsych/man/size.ci.mean1.Rd |only statpsych-1.5.0/statpsych/man/size.ci.prop1.Rd |only statpsych-1.5.0/statpsych/man/size.test.mean1.Rd |only statpsych-1.5.0/statpsych/man/size.test.prop1.Rd |only statpsych-1.5.0/statpsych/man/size.test.sign1.Rd |only statpsych-1.5.0/statpsych/man/test.anova1.bs.Rd |only statpsych-1.5.0/statpsych/man/test.prop1.Rd |only statpsych-1.6.0/statpsych/DESCRIPTION | 8 statpsych-1.6.0/statpsych/MD5 | 346 ++-- statpsych-1.6.0/statpsych/NAMESPACE | 77 - statpsych-1.6.0/statpsych/NEWS.md | 42 statpsych-1.6.0/statpsych/R/statpsych1.R | 896 +++++++----- statpsych-1.6.0/statpsych/R/statpsych2.R | 951 +++++++++++-- statpsych-1.6.0/statpsych/R/statpsych3.R | 790 ++++++++-- statpsych-1.6.0/statpsych/build/partial.rdb |binary statpsych-1.6.0/statpsych/inst/REFERENCES.bib | 65 statpsych-1.6.0/statpsych/man/adj.se.Rd |only statpsych-1.6.0/statpsych/man/ci.2x2.mean.bs.Rd | 4 statpsych-1.6.0/statpsych/man/ci.2x2.mean.mixed.Rd | 4 statpsych-1.6.0/statpsych/man/ci.2x2.mean.ws.Rd | 4 statpsych-1.6.0/statpsych/man/ci.2x2.median.bs.Rd | 38 statpsych-1.6.0/statpsych/man/ci.2x2.median.mixed.Rd | 115 - statpsych-1.6.0/statpsych/man/ci.2x2.median.ws.Rd | 114 - statpsych-1.6.0/statpsych/man/ci.2x2.prop.bs.Rd | 4 statpsych-1.6.0/statpsych/man/ci.2x2.prop.mixed.Rd | 8 statpsych-1.6.0/statpsych/man/ci.2x2.stdmean.bs.Rd | 13 statpsych-1.6.0/statpsych/man/ci.2x2.stdmean.mixed.Rd | 114 - statpsych-1.6.0/statpsych/man/ci.2x2.stdmean.ws.Rd | 115 - statpsych-1.6.0/statpsych/man/ci.agree.3rater.Rd | 13 statpsych-1.6.0/statpsych/man/ci.agree.Rd | 11 statpsych-1.6.0/statpsych/man/ci.agree2.Rd | 4 statpsych-1.6.0/statpsych/man/ci.bayes.normal.Rd | 6 statpsych-1.6.0/statpsych/man/ci.bayes.prop.Rd |only statpsych-1.6.0/statpsych/man/ci.biphi.Rd | 8 statpsych-1.6.0/statpsych/man/ci.bscor.Rd |only statpsych-1.6.0/statpsych/man/ci.cod.Rd |only statpsych-1.6.0/statpsych/man/ci.condslope.Rd | 2 statpsych-1.6.0/statpsych/man/ci.condslope.log.Rd | 8 statpsych-1.6.0/statpsych/man/ci.cor.Rd | 2 statpsych-1.6.0/statpsych/man/ci.cor.dep.Rd | 2 statpsych-1.6.0/statpsych/man/ci.cor2.Rd | 6 statpsych-1.6.0/statpsych/man/ci.cor2.gen.Rd | 4 statpsych-1.6.0/statpsych/man/ci.cqv.Rd |only statpsych-1.6.0/statpsych/man/ci.cramer.Rd | 2 statpsych-1.6.0/statpsych/man/ci.cronbach.Rd | 7 statpsych-1.6.0/statpsych/man/ci.cronbach2.Rd | 6 statpsych-1.6.0/statpsych/man/ci.cv.Rd |only statpsych-1.6.0/statpsych/man/ci.kappa.Rd | 7 statpsych-1.6.0/statpsych/man/ci.lc.gen.bs.Rd | 8 statpsych-1.6.0/statpsych/man/ci.lc.glm.Rd | 2 statpsych-1.6.0/statpsych/man/ci.lc.mean.bs.Rd | 4 statpsych-1.6.0/statpsych/man/ci.lc.median.bs.Rd | 8 statpsych-1.6.0/statpsych/man/ci.lc.prop.bs.Rd | 4 statpsych-1.6.0/statpsych/man/ci.lc.reg.Rd | 11 statpsych-1.6.0/statpsych/man/ci.lc.stdmean.ws.Rd | 4 statpsych-1.6.0/statpsych/man/ci.mad.Rd |only statpsych-1.6.0/statpsych/man/ci.mape.Rd |only statpsych-1.6.0/statpsych/man/ci.mean.Rd |only statpsych-1.6.0/statpsych/man/ci.mean.fpc.Rd |only statpsych-1.6.0/statpsych/man/ci.mean.ps.Rd | 6 statpsych-1.6.0/statpsych/man/ci.mean2.Rd | 7 statpsych-1.6.0/statpsych/man/ci.median.Rd |only statpsych-1.6.0/statpsych/man/ci.median.ps.Rd | 7 statpsych-1.6.0/statpsych/man/ci.median2.Rd | 12 statpsych-1.6.0/statpsych/man/ci.pairs.mult.Rd |only statpsych-1.6.0/statpsych/man/ci.pairs.prop.bs.Rd | 8 statpsych-1.6.0/statpsych/man/ci.pbcor.Rd | 2 statpsych-1.6.0/statpsych/man/ci.phi.Rd | 10 statpsych-1.6.0/statpsych/man/ci.poisson.Rd |only statpsych-1.6.0/statpsych/man/ci.prop.Rd |only statpsych-1.6.0/statpsych/man/ci.prop.fpc.Rd |only statpsych-1.6.0/statpsych/man/ci.prop.inv.Rd |only statpsych-1.6.0/statpsych/man/ci.prop.ps.Rd | 6 statpsych-1.6.0/statpsych/man/ci.prop2.Rd | 4 statpsych-1.6.0/statpsych/man/ci.prop2.inv.Rd | 8 statpsych-1.6.0/statpsych/man/ci.pv.Rd | 112 - statpsych-1.6.0/statpsych/man/ci.random.anova.Rd |only statpsych-1.6.0/statpsych/man/ci.ratio.cod2.Rd |only statpsych-1.6.0/statpsych/man/ci.ratio.cv2.Rd | 102 - statpsych-1.6.0/statpsych/man/ci.ratio.mad2.Rd | 4 statpsych-1.6.0/statpsych/man/ci.ratio.mape2.Rd |only statpsych-1.6.0/statpsych/man/ci.ratio.mean2.Rd | 4 statpsych-1.6.0/statpsych/man/ci.ratio.median.ps.Rd | 8 statpsych-1.6.0/statpsych/man/ci.ratio.median2.Rd | 4 statpsych-1.6.0/statpsych/man/ci.ratio.poisson2.Rd |only statpsych-1.6.0/statpsych/man/ci.ratio.prop.ps.Rd | 2 statpsych-1.6.0/statpsych/man/ci.ratio.prop2.Rd | 4 statpsych-1.6.0/statpsych/man/ci.ratio.sd2.Rd | 4 statpsych-1.6.0/statpsych/man/ci.rel2.Rd | 6 statpsych-1.6.0/statpsych/man/ci.reliability.Rd | 3 statpsych-1.6.0/statpsych/man/ci.rsqr.Rd | 2 statpsych-1.6.0/statpsych/man/ci.sign.Rd |only statpsych-1.6.0/statpsych/man/ci.slope.mean.bs.Rd | 14 statpsych-1.6.0/statpsych/man/ci.slope.prop.bs.Rd | 10 statpsych-1.6.0/statpsych/man/ci.spcor.Rd | 2 statpsych-1.6.0/statpsych/man/ci.spear.Rd | 2 statpsych-1.6.0/statpsych/man/ci.spear2.Rd | 2 statpsych-1.6.0/statpsych/man/ci.stdmean.Rd |only statpsych-1.6.0/statpsych/man/ci.stdmean.ps.Rd | 10 statpsych-1.6.0/statpsych/man/ci.stdmean.strat.Rd | 4 statpsych-1.6.0/statpsych/man/ci.stdmean2.Rd | 2 statpsych-1.6.0/statpsych/man/ci.theil.Rd | 2 statpsych-1.6.0/statpsych/man/ci.tukey.Rd | 4 statpsych-1.6.0/statpsych/man/ci.var.upper.Rd | 10 statpsych-1.6.0/statpsych/man/ci.yule.Rd | 2 statpsych-1.6.0/statpsych/man/etasqr.adj.Rd | 2 statpsych-1.6.0/statpsych/man/etasqr.gen.2way.Rd | 10 statpsych-1.6.0/statpsych/man/fitindices.Rd |only statpsych-1.6.0/statpsych/man/iqv.Rd | 2 statpsych-1.6.0/statpsych/man/pi.cor.Rd |only statpsych-1.6.0/statpsych/man/pi.prop.Rd |only statpsych-1.6.0/statpsych/man/pi.score.Rd |only statpsych-1.6.0/statpsych/man/pi.score.ps.Rd | 8 statpsych-1.6.0/statpsych/man/pi.var.upper.Rd | 34 statpsych-1.6.0/statpsych/man/power.cor.Rd |only statpsych-1.6.0/statpsych/man/power.cor2.Rd | 2 statpsych-1.6.0/statpsych/man/power.lc.mean.bs.Rd | 2 statpsych-1.6.0/statpsych/man/power.mean.Rd |only statpsych-1.6.0/statpsych/man/power.mean.ps.Rd | 2 statpsych-1.6.0/statpsych/man/power.mean2.Rd | 2 statpsych-1.6.0/statpsych/man/power.prop.Rd |only statpsych-1.6.0/statpsych/man/power.prop.ps.Rd | 4 statpsych-1.6.0/statpsych/man/power.prop2.Rd | 4 statpsych-1.6.0/statpsych/man/randomize.Rd | 4 statpsych-1.6.0/statpsych/man/sim.ci.cor.Rd | 2 statpsych-1.6.0/statpsych/man/sim.ci.mean.Rd |only statpsych-1.6.0/statpsych/man/sim.ci.mean.ps.Rd | 8 statpsych-1.6.0/statpsych/man/sim.ci.mean2.Rd | 10 statpsych-1.6.0/statpsych/man/sim.ci.median.Rd |only statpsych-1.6.0/statpsych/man/sim.ci.median.ps.Rd | 15 statpsych-1.6.0/statpsych/man/sim.ci.median2.Rd | 8 statpsych-1.6.0/statpsych/man/sim.ci.spear.Rd | 4 statpsych-1.6.0/statpsych/man/sim.ci.stdmean.ps.Rd | 10 statpsych-1.6.0/statpsych/man/sim.ci.stdmean2.Rd | 10 statpsych-1.6.0/statpsych/man/size.ci.agree.Rd | 8 statpsych-1.6.0/statpsych/man/size.ci.condmean.Rd | 6 statpsych-1.6.0/statpsych/man/size.ci.cor.Rd | 4 statpsych-1.6.0/statpsych/man/size.ci.cor.prior.Rd |only statpsych-1.6.0/statpsych/man/size.ci.cor2.Rd |only statpsych-1.6.0/statpsych/man/size.ci.cronbach.Rd | 4 statpsych-1.6.0/statpsych/man/size.ci.etasqr.Rd | 2 statpsych-1.6.0/statpsych/man/size.ci.indirect.Rd | 8 statpsych-1.6.0/statpsych/man/size.ci.lc.ancova.Rd | 6 statpsych-1.6.0/statpsych/man/size.ci.lc.prop.bs.Rd | 6 statpsych-1.6.0/statpsych/man/size.ci.mape.Rd |only statpsych-1.6.0/statpsych/man/size.ci.mean.Rd |only statpsych-1.6.0/statpsych/man/size.ci.mean.prior.Rd |only statpsych-1.6.0/statpsych/man/size.ci.pbcor.Rd | 84 - statpsych-1.6.0/statpsych/man/size.ci.prop.Rd |only statpsych-1.6.0/statpsych/man/size.ci.prop.prior.Rd |only statpsych-1.6.0/statpsych/man/size.ci.prop.ps.Rd | 14 statpsych-1.6.0/statpsych/man/size.ci.prop2.Rd | 6 statpsych-1.6.0/statpsych/man/size.ci.ratio.prop.ps.Rd | 8 statpsych-1.6.0/statpsych/man/size.ci.ratio.prop2.Rd | 4 statpsych-1.6.0/statpsych/man/size.ci.rsqr.Rd | 8 statpsych-1.6.0/statpsych/man/size.ci.slope.Rd | 4 statpsych-1.6.0/statpsych/man/size.ci.spear.Rd | 72 statpsych-1.6.0/statpsych/man/size.ci.spear2.Rd |only statpsych-1.6.0/statpsych/man/size.ci.stdmean.ps.Rd | 10 statpsych-1.6.0/statpsych/man/size.ci.tetra.Rd |only statpsych-1.6.0/statpsych/man/size.interval.cor.Rd | 12 statpsych-1.6.0/statpsych/man/size.test.cor.Rd | 6 statpsych-1.6.0/statpsych/man/size.test.cor2.Rd | 10 statpsych-1.6.0/statpsych/man/size.test.cronbach2.Rd | 4 statpsych-1.6.0/statpsych/man/size.test.lc.ancova.Rd | 8 statpsych-1.6.0/statpsych/man/size.test.mean.Rd |only statpsych-1.6.0/statpsych/man/size.test.prop.Rd |only statpsych-1.6.0/statpsych/man/size.test.prop.ps.Rd | 6 statpsych-1.6.0/statpsych/man/size.test.prop2.Rd | 27 statpsych-1.6.0/statpsych/man/size.test.sign.Rd |only statpsych-1.6.0/statpsych/man/size.test.sign.ps.Rd | 18 statpsych-1.6.0/statpsych/man/size.test.slope.Rd | 2 statpsych-1.6.0/statpsych/man/slope.contrast.Rd | 4 statpsych-1.6.0/statpsych/man/spearmanbrown.Rd | 68 statpsych-1.6.0/statpsych/man/test.anova.bs.Rd |only statpsych-1.6.0/statpsych/man/test.cor.Rd |only statpsych-1.6.0/statpsych/man/test.cor2.Rd |only statpsych-1.6.0/statpsych/man/test.kurtosis.Rd | 2 statpsych-1.6.0/statpsych/man/test.mean.Rd |only statpsych-1.6.0/statpsych/man/test.mono.mean.bs.Rd | 4 statpsych-1.6.0/statpsych/man/test.mono.prop.bs.Rd | 4 statpsych-1.6.0/statpsych/man/test.prop.Rd |only statpsych-1.6.0/statpsych/man/test.prop.ps.Rd | 11 statpsych-1.6.0/statpsych/man/test.prop2.Rd | 8 statpsych-1.6.0/statpsych/man/test.skew.Rd | 2 statpsych-1.6.0/statpsych/man/test.spear.Rd |only statpsych-1.6.0/statpsych/man/test.spear2.Rd |only statpsych-1.6.0/statpsych/tests/testthat/test_statpsych1.R | 113 + statpsych-1.6.0/statpsych/tests/testthat/test_statpsych2.R | 185 ++ statpsych-1.6.0/statpsych/tests/testthat/test_statpsych3.R | 123 + statpsych-1.6.0/statpsych/tests/testthat/test_statpsych4.R | 8 214 files changed, 3542 insertions(+), 1706 deletions(-)
Title: Collection of Data Sets for Teaching Purposes
Description: Collection (syllogi in greek) of real and fictitious data sets for teaching purposes.
The datasets were manually entered by the author from the respective references as listed in the individual dataset documentation.
The fictions datasets are the creation of the author, that he has found useful for teaching statistics.
Author: Jared Studyvin [aut, cre]
Maintainer: Jared Studyvin <studyvinstat@gmail.com>
Diff between syllogi versions 1.0.2 dated 2024-01-08 and 1.0.3 dated 2024-07-08
DESCRIPTION | 11 +++++----- MD5 | 45 +++++++++++++++++++++++++++++++------------ R/alligatorDiet.R |only R/alligatorLength.R |only R/annualSales.R |only R/bighornSheep.R |only R/bladderCancer.R |only R/butterflyPlot.R | 2 + R/depression.R | 2 + R/dogFood.R | 2 + R/federalistPapers.R | 2 + R/genericData.R | 2 + R/nutritionCancer.R | 2 + R/osteosarcoma.R | 2 + R/patientSatisfaction.R | 2 + R/politicalIdeology.R |only R/schoolProgram.R | 2 + R/shipGold.R | 2 + R/weightLoss.R | 2 + R/wheat.R |only data/alligatorDiet.RData |only data/alligatorLength.RData |only data/annualSales.RData |only data/bighornSheep.RData |only data/bladderCancer.RData |only data/politicalIdeology.RData |only data/wheat.RData |only man/alligatorDiet.Rd |only man/alligatorLength.Rd |only man/annualSales.Rd |only man/bighornSheep.Rd |only man/bladderCancer.Rd |only man/politicalIdeology.Rd |only man/wheat.Rd |only 34 files changed, 61 insertions(+), 17 deletions(-)
Title: A Code Generator for ODE-Based Models
Description: Provides an R6 class and several utility methods to
facilitate the implementation of models based on ordinary
differential equations. The heart of the package is a code generator
that creates compiled 'Fortran' (or 'R') code which can be passed to
a numerical solver. There is direct support for solvers contained
in packages 'deSolve' and 'rootSolve'.
Author: David Kneis <david.kneis@tu-dresden.de>
Maintainer: David Kneis <david.kneis@tu-dresden.de>
Diff between rodeo versions 0.8.1 dated 2024-07-04 and 0.8.2 dated 2024-07-08
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/plainMethod_buildFromWorkbook.r | 2 +- inst/doc/rodeoVignette.pdf |binary 4 files changed, 8 insertions(+), 8 deletions(-)
Title: The Phoenix Pediatric Sepsis and Septic Shock Criteria
Description: Implementation of the Phoenix and Phoenix-8 Sepsis Criteria as
described in "Development and Validation of the Phoenix Criteria for
Pediatric Sepsis and Septic Shock" by Sanchez-Pinto, Bennett, DeWitt,
Russell et al. (2024) <doi:10.1001/jama.2024.0196> (Drs. Sanchez-Pinto
and Bennett contributed equally to this manuscript; Dr. DeWitt and Mr.
Russell contributed equally to the manuscript), "International Consensus
Criteria for Pediatric Sepsis and Septic Shock" by Schlapbach, Watson,
Sorce, Argent, et al. (2024) <doi:10.1001/jama.2024.0179> (Drs Schlapbach,
Watson, Sorce, and Argent contributed equally) and the application note
"phoenix: an R package and Python module for calculating the Phoenix
pediatric sepsis score and criteria" by DeWitt, Russell, Rebull,
Sanchez-Pinto, and Bennett (2024) <doi:10.1093/jamiaopen/ooae066>.
Author: Peter DeWitt [aut, cre] ,
Seth Russell [ctb] ,
Meg Rebull [ctb] ,
Tell Bennett [ctb] ,
L. Nelson Sanchez-Pinto [ctb]
Maintainer: Peter DeWitt <peter.dewitt@cuanschutz.edu>
Diff between phoenix versions 1.1.0 dated 2024-05-03 and 1.1.1 dated 2024-07-08
DESCRIPTION | 15 - MD5 | 18 - NEWS.md | 4 README.md | 15 - build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 18 + inst/doc/phoenix.html | 424 +++++++++++++++++----------------- inst/phoenix_rubric.md | 2 inst/phoenix_rubric_sans_footnotes.md | 2 10 files changed, 261 insertions(+), 237 deletions(-)
Title: Estimation Statistics with Confidence Intervals
Description: A collection of functions and 'jamovi' module for the estimation approach to inferential statistics, the approach which emphasizes effect sizes, interval estimates, and meta-analysis. Nearly all functions are based on 'statpsych' and 'metafor'. This package is still under active development, and breaking changes are likely, especially with the plot and hypothesis test functions. Data sets are included for all examples from Cumming & Calin-Jageman (2024) <ISBN:9780367531508>.
Author: Robert Calin-Jageman [aut, cre, cph]
Maintainer: Robert Calin-Jageman <rcalinjageman@dom.edu>
Diff between esci versions 1.0.2 dated 2024-03-21 and 1.0.3 dated 2024-07-08
esci-1.0.2/esci/build/partial.rdb |only esci-1.0.3/esci/DESCRIPTION | 8 - esci-1.0.3/esci/MD5 | 52 +++---- esci-1.0.3/esci/NAMESPACE | 6 esci-1.0.3/esci/NEWS.md | 9 + esci-1.0.3/esci/R/CI_smd_ind_contrast.R | 14 - esci-1.0.3/esci/R/esci-package.R | 6 esci-1.0.3/esci/R/estimate_magnitude.R | 8 - esci-1.0.3/esci/R/estimate_mdiff_one.R | 6 esci-1.0.3/esci/R/estimate_pdiff_one.R | 3 esci-1.0.3/esci/R/estimate_proportion.R | 3 esci-1.0.3/esci/R/overview.R | 6 esci-1.0.3/esci/R/overview_nominal.R | 4 esci-1.0.3/esci/R/plot_aesthetics.R | 101 ++++++++++--- esci-1.0.3/esci/R/statpsych_apply.R | 4 esci-1.0.3/esci/R/statpsych_wrapper.R | 102 +++++++++++++- esci-1.0.3/esci/README.md | 4 esci-1.0.3/esci/build/stage23.rdb |only esci-1.0.3/esci/man/CI_smd_ind_contrast.Rd | 14 - esci-1.0.3/esci/man/estimate_magnitude.Rd | 6 esci-1.0.3/esci/man/estimate_mdiff_one.Rd | 6 esci-1.0.3/esci/man/estimate_pdiff_one.Rd | 3 esci-1.0.3/esci/man/estimate_proportion.Rd | 3 esci-1.0.3/esci/man/geom_meta_diamond_h.Rd | 32 +++- esci-1.0.3/esci/tests/testthat/test_estimate_magnitude.R | 72 +++++++-- esci-1.0.3/esci/tests/testthat/test_estimate_mdiff_one.R | 44 ++++-- esci-1.0.3/esci/tests/testthat/test_estimate_pdiff_one.R | 68 +++++++-- esci-1.0.3/esci/tests/testthat/test_estimate_proportion.R | 65 ++++++-- 28 files changed, 483 insertions(+), 166 deletions(-)
Title: Data Published by the United States Federal Energy Regulatory
Commission
Description: Data published by the United States Federal Energy Regulatory Commission including
electric company financial data, natural gas company financial data,
hydropower plant data, liquified natural gas plant data, oil company financial data
natural gas company financial data, and natural gas storage field data.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between energyr versions 0.1.2 dated 2018-12-02 and 0.1.3 dated 2024-07-08
DESCRIPTION | 19 ++++++++++--------- MD5 | 31 ++++++++++++++++--------------- NAMESPACE | 1 - NEWS.md | 7 +++++++ R/hydropower.R | 1 - R/lng.R | 1 - R/storage.R | 1 - README.md | 14 ++++++-------- inst/CITATION |only man/electric.Rd | 6 ++++-- man/energyr.Rd | 1 - man/gas.Rd | 6 ++++-- man/hydropower.Rd | 6 ++++-- man/lng.Rd | 6 ++++-- man/oil.Rd | 6 ++++-- man/pipeline.Rd | 6 ++++-- man/storage.Rd | 6 ++++-- 17 files changed, 67 insertions(+), 51 deletions(-)
Title: Mean of Order P, Peaks over Random Threshold Hill and High
Quantile Estimates
Description: The R package proposes extreme value index estimators for heavy tailed models
by mean of order p <DOI:10.1016/j.csda.2012.07.019>, peaks over random threshold
<DOI:10.57805/revstat.v4i3.37> and a bias-reduced estimator
<DOI:10.1080/00949655.2010.547196>.
The package also computes moment, generalised Hill <DOI:10.2307/3318416>
and mixed moment estimates for the extreme value index.
High quantiles and value at risk estimators based on these estimators are implemented.
Author: Leo Belzile [cre] ,
B. G. Manjunath [aut] ,
Frederico Caeiro [aut] ,
Maria Ivette. Gomes [ctb] ,
Maria Isabel Fraga Alves [ctb]
Maintainer: Leo Belzile <belzilel@gmail.com>
Diff between evt0 versions 1.1-4 dated 2023-04-21 and 1.1.5 dated 2024-07-08
DESCRIPTION | 11 +++++------ MD5 | 2 +- 2 files changed, 6 insertions(+), 7 deletions(-)
Title: Interactive Forest Plot
Description: Interactive forest plot for clinical trial safety analysis
using 'metalite', 'reactable', 'plotly', and Analysis Data Model (ADaM)
datasets. Includes functionality for adverse event filtering,
incidence-based group filtering, hover-over reveals, and search and sort
operations. The workflow allows for metadata construction, data preparation,
output formatting, and interactive plot generation.
Author: Yilong Zhang [aut],
Benjamin Wang [aut, cre],
Yujie Zhao [aut],
Nan Xiao [ctb],
Hiroaki Fukuda [ctb],
Yulia Sidi [ctb],
Xuan Deng [ctb],
Merck & Co., Inc., Rahway, NJ, USA and its affiliates [cph]
Maintainer: Benjamin Wang <benjamin.wang@merck.com>
Diff between forestly versions 0.1.0 dated 2023-07-19 and 0.1.1 dated 2024-07-08
DESCRIPTION | 24 +- MD5 | 66 +++-- NAMESPACE | 31 ++ NEWS.md | 14 + R/ae_forestly.R | 92 ++++++-- R/ae_listing.R | 181 +++++++++------- R/format_ae_forestly.R | 25 +- R/globals.R |only R/meta_forestly.R | 25 +- R/plot.R |only R/prepare_ae_forestly.R | 73 +++++- R/reactable2.R | 25 ++ README.md | 25 +- build/vignette.rds |binary data/forestly_adae.rda |binary data/forestly_adsl.rda |binary inst/doc/forest-plot-static.R |only inst/doc/forest-plot-static.Rmd |only inst/doc/forest-plot-static.html |only inst/doc/forestly-cran.R | 10 inst/doc/forestly-cran.Rmd | 8 inst/doc/forestly-cran.html | 26 +- inst/js/filter-crosstalk.js | 2 man/ae_forestly.Rd | 16 + man/background_panel.Rd |only man/format_ae_forestly.Rd | 6 man/meta_forestly.Rd | 22 + man/plot_dot.Rd |only man/plot_errorbar.Rd |only man/prepare_ae_forestly.Rd | 19 + man/table_panel.Rd |only man/theme_panel.Rd |only tests/testthat/helper-ae_forestly.R |only tests/testthat/helper-format_ae_forestly.R |only tests/testthat/helper-meta_forestly.R |only tests/testthat/test-ae_forestly.R | 26 -- tests/testthat/test-format_ae_forestly.R | 15 - tests/testthat/test-independent-testing-meta_forestly.R | 35 --- tests/testthat/test-prepare_ae_forestly.R | 3 vignettes/forest-plot-static.Rmd |only vignettes/forestly-cran.Rmd | 8 41 files changed, 523 insertions(+), 254 deletions(-)
Title: Truncated Multivariate Normal and Student Distributions
Description: A collection of functions to deal with the truncated univariate and multivariate normal and Student distributions, described in Botev (2017) <doi:10.1111/rssb.12162> and Botev and L'Ecuyer (2015) <doi:10.1109/WSC.2015.7408180>.
Author: Zdravko Botev [aut] ,
Leo Belzile [aut, cre]
Maintainer: Leo Belzile <belzilel@gmail.com>
Diff between TruncatedNormal versions 2.2.2 dated 2021-09-08 and 2.3 dated 2024-07-08
TruncatedNormal-2.2.2/TruncatedNormal/tests/testthat |only TruncatedNormal-2.2.2/TruncatedNormal/tests/testthat.R |only TruncatedNormal-2.3/TruncatedNormal/DESCRIPTION | 13 TruncatedNormal-2.3/TruncatedNormal/MD5 | 86 - TruncatedNormal-2.3/TruncatedNormal/NAMESPACE | 3 TruncatedNormal-2.3/TruncatedNormal/NEWS.md | 20 TruncatedNormal-2.3/TruncatedNormal/R/RcppExports.R | 18 TruncatedNormal-2.3/TruncatedNormal/R/cholperm.R | 10 TruncatedNormal-2.3/TruncatedNormal/R/mvNcdf.R | 6 TruncatedNormal-2.3/TruncatedNormal/R/mvNqmc.R | 35 TruncatedNormal-2.3/TruncatedNormal/R/mvTcdf.R | 8 TruncatedNormal-2.3/TruncatedNormal/R/mvTqmc.R | 6 TruncatedNormal-2.3/TruncatedNormal/R/mvnprqmc.R | 7 TruncatedNormal-2.3/TruncatedNormal/R/mvrandn.R | 8 TruncatedNormal-2.3/TruncatedNormal/R/mvtprqmc.R | 7 TruncatedNormal-2.3/TruncatedNormal/R/ntail.R | 10 TruncatedNormal-2.3/TruncatedNormal/R/tmvnorm.R | 141 +- TruncatedNormal-2.3/TruncatedNormal/R/tmvt.R | 148 +- TruncatedNormal-2.3/TruncatedNormal/R/tnorm.R | 53 TruncatedNormal-2.3/TruncatedNormal/build/vignette.rds |binary TruncatedNormal-2.3/TruncatedNormal/inst/doc/TruncatedNormal_vignette.R | 2 TruncatedNormal-2.3/TruncatedNormal/inst/doc/TruncatedNormal_vignette.html | 702 +++++++--- TruncatedNormal-2.3/TruncatedNormal/inst/tinytest |only TruncatedNormal-2.3/TruncatedNormal/man/TruncatedNormal-package.Rd | 1 TruncatedNormal-2.3/TruncatedNormal/man/cholperm.Rd | 8 TruncatedNormal-2.3/TruncatedNormal/man/dot-cholpermGB.Rd | 10 TruncatedNormal-2.3/TruncatedNormal/man/dot-cholpermGGE.Rd | 8 TruncatedNormal-2.3/TruncatedNormal/man/dtmvnorm.Rd | 13 TruncatedNormal-2.3/TruncatedNormal/man/dtmvt.Rd | 20 TruncatedNormal-2.3/TruncatedNormal/man/mvNcdf.Rd | 6 TruncatedNormal-2.3/TruncatedNormal/man/mvNqmc.Rd | 12 TruncatedNormal-2.3/TruncatedNormal/man/mvTcdf.Rd | 6 TruncatedNormal-2.3/TruncatedNormal/man/mvTqmc.Rd | 6 TruncatedNormal-2.3/TruncatedNormal/man/mvrandn.Rd | 8 TruncatedNormal-2.3/TruncatedNormal/man/pmvnorm.Rd | 13 TruncatedNormal-2.3/TruncatedNormal/man/pmvt.Rd | 14 TruncatedNormal-2.3/TruncatedNormal/man/ptmvnorm.Rd | 13 TruncatedNormal-2.3/TruncatedNormal/man/ptmvt.Rd | 20 TruncatedNormal-2.3/TruncatedNormal/man/rtmvnorm.Rd | 2 TruncatedNormal-2.3/TruncatedNormal/man/rtmvt.Rd | 6 TruncatedNormal-2.3/TruncatedNormal/man/tmvnorm.Rd | 8 TruncatedNormal-2.3/TruncatedNormal/man/tmvt.Rd | 6 TruncatedNormal-2.3/TruncatedNormal/src/Makevars | 11 TruncatedNormal-2.3/TruncatedNormal/src/Makevars.win | 11 TruncatedNormal-2.3/TruncatedNormal/src/lnNpr_cholperm_Phinv.cpp | 18 TruncatedNormal-2.3/TruncatedNormal/tests/tinytest.R |only 46 files changed, 1024 insertions(+), 479 deletions(-)
More information about TruncatedNormal at CRAN
Permanent link
Title: Structure for Organizing Monte Carlo Simulation Designs
Description: Provides tools to safely and efficiently organize and execute
Monte Carlo simulation experiments in R.
The package controls the structure and back-end of Monte Carlo simulation experiments
by utilizing a generate-analyse-summarise workflow. The workflow safeguards against
common simulation coding issues, such as automatically re-simulating non-convergent results,
prevents inadvertently overwriting simulation files, catches error and warning messages
during execution, implicitly supports parallel processing with high-quality random number
generation, and provides tools for managing high-performance computing (HPC) array jobs
submitted to schedulers such as SLURM. For a pedagogical introduction to the package see
Sigal and Chalmers (2016) <doi:10.1080/10691898.2016.1246953>. For a more in-depth overview of
the package and its design philosophy see Chalmers and Adkins (2020) <doi:10.20982/tqmp.16.4.p248>.
Author: Phil Chalmers [aut, cre] ,
Matthew Sigal [ctb],
Ogreden Oguzhan [ctb],
Mikko Ronkko [ctb]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between SimDesign versions 2.15.1 dated 2024-04-24 and 2.16 dated 2024-07-08
SimDesign-2.15.1/SimDesign/R/add_missing.R |only SimDesign-2.15.1/SimDesign/R/aggregate_simulations.R |only SimDesign-2.15.1/SimDesign/R/boot_predict.R |only SimDesign-2.15.1/SimDesign/R/convertWarnings.R |only SimDesign-2.15.1/SimDesign/man/add_missing.Rd |only SimDesign-2.15.1/SimDesign/man/aggregate_simulations.Rd |only SimDesign-2.15.1/SimDesign/man/boot_predict.Rd |only SimDesign-2.15.1/SimDesign/man/convertWarnings.Rd |only SimDesign-2.15.1/SimDesign/man/gen_seeds.Rd |only SimDesign-2.16/SimDesign/DESCRIPTION | 14 SimDesign-2.16/SimDesign/MD5 | 159 +++++----- SimDesign-2.16/SimDesign/NAMESPACE | 11 SimDesign-2.16/SimDesign/NEWS.md | 28 + SimDesign-2.16/SimDesign/R/AnalyseIf.R | 8 SimDesign-2.16/SimDesign/R/Attach.R | 6 SimDesign-2.16/SimDesign/R/Design.R | 6 SimDesign-2.16/SimDesign/R/GenerateIf.R | 8 SimDesign-2.16/SimDesign/R/PBA.R | 48 ++- SimDesign-2.16/SimDesign/R/SFA.R | 6 SimDesign-2.16/SimDesign/R/SimCollect.R |only SimDesign-2.16/SimDesign/R/SimDesign.R | 3 SimDesign-2.16/SimDesign/R/SimExtract.R | 21 - SimDesign-2.16/SimDesign/R/SimFunctions.R | 14 SimDesign-2.16/SimDesign/R/SimShiny.R | 6 SimDesign-2.16/SimDesign/R/SimSolve.R | 79 ++++- SimDesign-2.16/SimDesign/R/addMissing.R |only SimDesign-2.16/SimDesign/R/analysis.R | 13 SimDesign-2.16/SimDesign/R/bootPredict.R |only SimDesign-2.16/SimDesign/R/functions.R | 26 - SimDesign-2.16/SimDesign/R/manageMessages.R |only SimDesign-2.16/SimDesign/R/manageWarnings.R |only SimDesign-2.16/SimDesign/R/rbind.SimDesign.R | 6 SimDesign-2.16/SimDesign/R/reSummarise.R | 8 SimDesign-2.16/SimDesign/R/runArraySimulation.R | 27 - SimDesign-2.16/SimDesign/R/runSimulation.R | 104 +++--- SimDesign-2.16/SimDesign/R/summary_functions.R | 6 SimDesign-2.16/SimDesign/R/util.R | 212 +++++++++++--- SimDesign-2.16/SimDesign/inst/doc/Catch_errors.R | 18 - SimDesign-2.16/SimDesign/inst/doc/Catch_errors.Rmd | 24 - SimDesign-2.16/SimDesign/inst/doc/Catch_errors.html | 38 +- SimDesign-2.16/SimDesign/inst/doc/Fixed_obj_fun.R | 6 SimDesign-2.16/SimDesign/inst/doc/Fixed_obj_fun.Rmd | 6 SimDesign-2.16/SimDesign/inst/doc/Fixed_obj_fun.html | 16 - SimDesign-2.16/SimDesign/inst/doc/HPC-computing.R | 48 +-- SimDesign-2.16/SimDesign/inst/doc/HPC-computing.Rmd | 132 ++++---- SimDesign-2.16/SimDesign/inst/doc/HPC-computing.html | 139 +++++---- SimDesign-2.16/SimDesign/inst/doc/MultipleAnalyses.R | 24 - SimDesign-2.16/SimDesign/inst/doc/MultipleAnalyses.Rmd | 24 - SimDesign-2.16/SimDesign/inst/doc/MultipleAnalyses.html | 40 +- SimDesign-2.16/SimDesign/inst/doc/Parallel-computing.html | 4 SimDesign-2.16/SimDesign/inst/doc/Saving-results.R | 12 SimDesign-2.16/SimDesign/inst/doc/Saving-results.Rmd | 12 SimDesign-2.16/SimDesign/inst/doc/Saving-results.html | 34 +- SimDesign-2.16/SimDesign/inst/doc/SimDesign-intro.R | 6 SimDesign-2.16/SimDesign/inst/doc/SimDesign-intro.Rmd | 6 SimDesign-2.16/SimDesign/inst/doc/SimDesign-intro.html | 34 +- SimDesign-2.16/SimDesign/man/Analyse.Rd | 10 SimDesign-2.16/SimDesign/man/AnalyseIf.Rd | 8 SimDesign-2.16/SimDesign/man/Attach.Rd | 6 SimDesign-2.16/SimDesign/man/Generate.Rd | 12 SimDesign-2.16/SimDesign/man/GenerateIf.Rd | 8 SimDesign-2.16/SimDesign/man/MSRSE.Rd | 6 SimDesign-2.16/SimDesign/man/PBA.Rd | 9 SimDesign-2.16/SimDesign/man/SFA.Rd | 6 SimDesign-2.16/SimDesign/man/SimCollect.Rd |only SimDesign-2.16/SimDesign/man/SimExtract.Rd | 14 SimDesign-2.16/SimDesign/man/SimShiny.Rd | 6 SimDesign-2.16/SimDesign/man/SimSolve.Rd | 64 +++- SimDesign-2.16/SimDesign/man/Summarise.Rd | 4 SimDesign-2.16/SimDesign/man/addMissing.Rd |only SimDesign-2.16/SimDesign/man/bootPredict.Rd |only SimDesign-2.16/SimDesign/man/expandDesign.Rd | 6 SimDesign-2.16/SimDesign/man/genSeeds.Rd |only SimDesign-2.16/SimDesign/man/manageMessages.Rd |only SimDesign-2.16/SimDesign/man/manageWarnings.Rd |only SimDesign-2.16/SimDesign/man/quiet.Rd | 38 +- SimDesign-2.16/SimDesign/man/rbind.SimDesign.Rd | 6 SimDesign-2.16/SimDesign/man/reSummarise.Rd | 8 SimDesign-2.16/SimDesign/man/runArraySimulation.Rd | 25 - SimDesign-2.16/SimDesign/man/runSimulation.Rd | 66 ++-- SimDesign-2.16/SimDesign/man/timeFormater.Rd |only SimDesign-2.16/SimDesign/tests/tests/mpi/simulation.R | 6 SimDesign-2.16/SimDesign/tests/tests/test-01-core.R | 145 ++++----- SimDesign-2.16/SimDesign/tests/tests/test-02-aggregate.R | 98 ++++-- SimDesign-2.16/SimDesign/tests/tests/test-03-array.R | 12 SimDesign-2.16/SimDesign/vignettes/Catch_errors.Rmd | 24 - SimDesign-2.16/SimDesign/vignettes/Fixed_obj_fun.Rmd | 6 SimDesign-2.16/SimDesign/vignettes/HPC-computing.Rmd | 132 ++++---- SimDesign-2.16/SimDesign/vignettes/MultipleAnalyses.Rmd | 24 - SimDesign-2.16/SimDesign/vignettes/Saving-results.Rmd | 12 SimDesign-2.16/SimDesign/vignettes/SimDesign-intro.Rmd | 6 91 files changed, 1295 insertions(+), 914 deletions(-)
Title: Compositional Data Analysis
Description: Regression, classification, contour plots, hypothesis testing and fitting of distributions for compositional data are some of the functions included. We further include functions for percentages (or proportions).
The standard textbook for such data is John Aitchison's (1986) "The statistical analysis of compositional data". Relevant papers include:
a) Tsagris M.T., Preston S. and Wood A.T.A. (2011). "A data-based power transformation for compositional data". Fourth International International Workshop on Compositional Data Analysis. <doi:10.48550/arXiv.1106.1451>
b) Tsagris M. (2014). "The k-NN algorithm for compositional data: a revised approach with and without zero values present". Journal of Data Science, 12(3): 519--534. <doi:10.6339/JDS.201407_12(3).0008>.
c) Tsagris M. (2015). "A novel, divergence based, regression for compositional data". Proceedings of the 28th Panhellenic Statistics Conference, 15-18 April 2015, Athens, Greece, 430--444. <doi:10.48550/arXiv.151 [...truncated...]
Author: Michail Tsagris [aut, cre],
Giorgos Athineou [aut],
Abdulaziz Alenazi [ctb],
Christos Adam [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between Compositional versions 6.8 dated 2024-04-01 and 6.9 dated 2024-07-08
Compositional-6.8/Compositional/R/compbn.R |only Compositional-6.8/Compositional/R/fd.est.R |only Compositional-6.8/Compositional/R/kent.contour.R |only Compositional-6.8/Compositional/R/pcr.R |only Compositional-6.8/Compositional/man/compbn.Rd |only Compositional-6.8/Compositional/man/fd.est.Rd |only Compositional-6.8/Compositional/man/kent.contour.Rd |only Compositional-6.9/Compositional/DESCRIPTION | 18 - Compositional-6.9/Compositional/MD5 | 119 ++++--- Compositional-6.9/Compositional/NAMESPACE | 10 Compositional-6.9/Compositional/R/ait.R | 4 Compositional-6.9/Compositional/R/alfa.pcr.R | 8 Compositional-6.9/Compositional/R/alfa.reg.R | 99 +++++- Compositional-6.9/Compositional/R/alfa.reg2.R | 4 Compositional-6.9/Compositional/R/alfa.reg3.R | 74 +++- Compositional-6.9/Compositional/R/alfa.tune.R | 1 Compositional-6.9/Compositional/R/alfareg.tune.R | 1 Compositional-6.9/Compositional/R/dfd.R | 13 Compositional-6.9/Compositional/R/diri.contour.R | 163 ++++++++++ Compositional-6.9/Compositional/R/dptest.R | 9 Compositional-6.9/Compositional/R/glmpcr.tune.R | 1 Compositional-6.9/Compositional/R/lc.rq.R |only Compositional-6.9/Compositional/R/lc.rq2.R |only Compositional-6.9/Compositional/R/multinompcr.tune.R | 1 Compositional-6.9/Compositional/R/ols.compreg.R | 167 ++++++++--- Compositional-6.9/Compositional/R/pcr.tune.R | 8 Compositional-6.9/Compositional/R/rfd.R | 15 Compositional-6.9/Compositional/R/ridge.tune.R | 1 Compositional-6.9/Compositional/R/scls.R | 2 Compositional-6.9/Compositional/R/scrq.R |only Compositional-6.9/Compositional/R/tflr.R | 76 ++++- Compositional-6.9/Compositional/R/tflr.betest.R | 4 Compositional-6.9/Compositional/R/tflr.indeptest.R | 90 +++++ Compositional-6.9/Compositional/R/tflr2.R | 6 Compositional-6.9/Compositional/R/ulc.rq.R |only Compositional-6.9/Compositional/R/ulc.rq2.R |only Compositional-6.9/Compositional/man/Compositional-package.Rd | 4 Compositional-6.9/Compositional/man/aknnreg.tune.Rd | 4 Compositional-6.9/Compositional/man/alfa.pcr.Rd | 2 Compositional-6.9/Compositional/man/alfa.reg.Rd | 19 - Compositional-6.9/Compositional/man/alpha.mle.Rd | 10 Compositional-6.9/Compositional/man/beta.est.Rd | 2 Compositional-6.9/Compositional/man/beta.reg.Rd | 2 Compositional-6.9/Compositional/man/colbeta.mle.Rd | 2 Compositional-6.9/Compositional/man/dfd.Rd | 8 Compositional-6.9/Compositional/man/diri.nr.Rd | 3 Compositional-6.9/Compositional/man/fd.contour.Rd | 2 Compositional-6.9/Compositional/man/glm.pcr.Rd | 27 - Compositional-6.9/Compositional/man/kl.alfapcr.Rd | 2 Compositional-6.9/Compositional/man/klalfapcr.tune.Rd | 2 Compositional-6.9/Compositional/man/lc.reg2.Rd | 21 - Compositional-6.9/Compositional/man/lc.rq.Rd |only Compositional-6.9/Compositional/man/lc.rq2.Rd |only Compositional-6.9/Compositional/man/multivt.Rd | 2 Compositional-6.9/Compositional/man/ols.compreg.Rd | 2 Compositional-6.9/Compositional/man/propreg.Rd | 30 - Compositional-6.9/Compositional/man/rcompsn.Rd | 4 Compositional-6.9/Compositional/man/rcompt.Rd | 2 Compositional-6.9/Compositional/man/rfd.Rd | 4 Compositional-6.9/Compositional/man/ridge.reg.Rd | 10 Compositional-6.9/Compositional/man/scls.Rd | 2 Compositional-6.9/Compositional/man/scrq.Rd |only Compositional-6.9/Compositional/man/tflr.Rd | 8 Compositional-6.9/Compositional/man/ulc.glm.Rd | 4 Compositional-6.9/Compositional/man/ulc.glm2.Rd | 2 Compositional-6.9/Compositional/man/ulc.reg2.Rd | 5 Compositional-6.9/Compositional/man/ulc.rq.Rd |only Compositional-6.9/Compositional/man/ulc.rq2.Rd |only Compositional-6.9/Compositional/man/zad.est.Rd | 6 69 files changed, 783 insertions(+), 302 deletions(-)
Title: Interactive Weibull Probability Plots with 'WeibullR'
Description: Build interactive Weibull Probability
Plots with 'WeibullR' by David Silkworth and Jurgen Symynck (2022)
<https://CRAN.R-project.org/package=WeibullR>, an R package for
Weibull analysis, and 'plotly' by Carson Sievert (2020) <https://plotly-r.com>,
an interactive web-based graphing library.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between WeibullR.plotly versions 0.2.0 dated 2023-10-14 and 0.2.1 dated 2024-07-08
DESCRIPTION | 18 ++++++++++-------- MD5 | 11 +++++++---- NEWS.md | 7 ++++++- README.md | 14 ++++++++++---- inst/CITATION | 2 +- tests |only 6 files changed, 34 insertions(+), 18 deletions(-)
More information about WeibullR.plotly at CRAN
Permanent link
Title: Time Series Models for Disease Surveillance
Description: Fits time trend models for routine disease surveillance tasks and returns probability distributions for a variety of quantities of interest, including age-standardized rates, period and cumulative percent change, and measures of health inequality. The models are appropriate for count data such as disease incidence and mortality data, employing a Poisson or binomial likelihood and the first-difference (random-walk) prior for unknown risk. Optionally add a covariance matrix for multiple, correlated time series models. Inference is completed using Markov chain Monte Carlo via the Stan modeling language. References: Donegan, Hughes, and Lee (2022) <doi:10.2196/34589>; Stan Development Team (2021) <https://mc-stan.org>; Theil (1972, ISBN:0-444-10378-3).
Author: Connor Donegan [aut, cre]
Maintainer: Connor Donegan <connor.donegan@gmail.com>
Diff between surveil versions 0.2.2 dated 2023-10-02 and 0.3.0 dated 2024-07-08
DESCRIPTION | 12 MD5 | 64 ++-- NEWS.md | 8 R/apc.R | 5 R/group-diff.R | 9 R/methods.R | 35 -- R/stan_rw.R | 49 +-- R/theil.R | 6 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 16 - inst/doc/age-standardization.R | 53 --- inst/doc/age-standardization.Rmd | 118 +------ inst/doc/age-standardization.html | 328 +++++--------------- inst/doc/measuring-inequality.R |only inst/doc/measuring-inequality.Rmd |only inst/doc/measuring-inequality.html |only inst/doc/surveil-demo.R | 50 +-- inst/doc/surveil-demo.Rmd | 174 ++++------ inst/doc/surveil-demo.html | 591 ++++++++++++++++--------------------- inst/doc/surveil-mcmc.R | 34 +- inst/doc/surveil-mcmc.Rmd | 120 +++---- inst/doc/surveil-mcmc.html | 346 +++++++-------------- man/apc.Rd | 5 man/group_diff.Rd | 9 man/plot.surveil.Rd | 12 man/stan_rw.Rd | 49 +-- man/standardize.Rd | 15 man/surveil-package.Rd | 12 man/theil.Rd | 6 man/waic.Rd | 6 vignettes/age-standardization.Rmd | 118 +------ vignettes/measuring-inequality.Rmd |only vignettes/surveil-demo.Rmd | 174 ++++------ vignettes/surveil-mcmc.Rmd | 120 +++---- 35 files changed, 983 insertions(+), 1561 deletions(-)
Title: Hierarchical and Geographically Weighted Regression
Description: This model divides coefficients into three types,
i.e., local fixed effects, global fixed effects, and random effects (Hu et al., 2022)<doi:10.1177/23998083211063885>.
If data have spatial hierarchical structures (especially are overlapping on some locations),
it is worth trying this model to reach better fitness.
Author: Yigong Hu, Richard Harris, Richard Timmerman
Maintainer: Yigong Hu <yigong.hu@bristol.ac.uk>
Diff between hgwrr versions 0.3-0 dated 2023-05-26 and 0.4-0 dated 2024-07-08
hgwrr-0.3-0/hgwrr/man/matrix2char.Rd |only hgwrr-0.3-0/hgwrr/man/parse.formula.Rd |only hgwrr-0.3-0/hgwrr/src/hlmgwr.cpp |only hgwrr-0.3-0/hgwrr/src/hlmgwr.h |only hgwrr-0.4-0/hgwrr/DESCRIPTION | 17 hgwrr-0.4-0/hgwrr/MD5 | 72 - hgwrr-0.4-0/hgwrr/NAMESPACE | 47 hgwrr-0.4-0/hgwrr/NEWS.md |only hgwrr-0.4-0/hgwrr/R/RcppExports.R | 25 hgwrr-0.4-0/hgwrr/R/hgwr.R | 477 ++++++--- hgwrr-0.4-0/hgwrr/R/hgwrr-package.R |only hgwrr-0.4-0/hgwrr/R/make.dummy.R |only hgwrr-0.4-0/hgwrr/R/parse.formula.R | 54 - hgwrr-0.4-0/hgwrr/R/utils.R |only hgwrr-0.4-0/hgwrr/build/partial.rdb |binary hgwrr-0.4-0/hgwrr/build/vignette.rds |only hgwrr-0.4-0/hgwrr/configure | 1389 +++++++++++++++++---------- hgwrr-0.4-0/hgwrr/configure.ac | 3 hgwrr-0.4-0/hgwrr/data/wuhan.hp.rda |binary hgwrr-0.4-0/hgwrr/inst |only hgwrr-0.4-0/hgwrr/man/fitted.hgwrm.Rd | 4 hgwrr-0.4-0/hgwrr/man/hgwr.Rd | 96 + hgwrr-0.4-0/hgwrr/man/hgwrr-package.Rd | 24 hgwrr-0.4-0/hgwrr/man/logLik.hgwrm.Rd |only hgwrr-0.4-0/hgwrr/man/make.dummy.Rd |only hgwrr-0.4-0/hgwrr/man/multisampling.Rd | 3 hgwrr-0.4-0/hgwrr/man/multisampling.large.Rd | 3 hgwrr-0.4-0/hgwrr/man/print.hgwrm.Rd | 7 hgwrr-0.4-0/hgwrr/man/print.summary.hgwrm.Rd | 7 hgwrr-0.4-0/hgwrr/man/print.table.md.Rd | 6 hgwrr-0.4-0/hgwrr/man/summary.hgwrm.Rd | 16 hgwrr-0.4-0/hgwrr/man/wuhan.hp.Rd | 8 hgwrr-0.4-0/hgwrr/src/Makevars.in | 13 hgwrr-0.4-0/hgwrr/src/Makevars.win | 13 hgwrr-0.4-0/hgwrr/src/RcppExports.cpp | 123 -- hgwrr-0.4-0/hgwrr/src/hetero_test.cpp |only hgwrr-0.4-0/hgwrr/src/hgwr.cpp |only hgwrr-0.4-0/hgwrr/src/libhgwr |only hgwrr-0.4-0/hgwrr/src/utils.h |only hgwrr-0.4-0/hgwrr/tests |only hgwrr-0.4-0/hgwrr/vignettes |only 41 files changed, 1518 insertions(+), 889 deletions(-)
Title: Interface for the 'QuickJS' Lightweight 'JavaScript' Engine
Description: An 'R' interface to the 'QuickJS' portable 'JavaScript'
engine. The engine and all 'R' to 'JavaScript' interoperability is bundled
within the package, requiring no dependencies beyond a 'C' compiler.
Author: Andrew R. Johnson [aut, cre] ,
Fabrice Bellard [cph] ,
Charlie Gordon [cph] ,
QuickJS-NG Authors [cph]
Maintainer: Andrew R. Johnson <andrew.johnson@arjohnsonau.com>
Diff between QuickJSR versions 1.2.2 dated 2024-06-07 and 1.3.0 dated 2024-07-08
QuickJSR-1.2.2/QuickJSR/src/quickjs/Changelog |only QuickJSR-1.2.2/QuickJSR/src/quickjs/TODO |only QuickJSR-1.2.2/QuickJSR/src/quickjs/VERSION |only QuickJSR-1.2.2/QuickJSR/src/quickjs/doc/jsbignum.texi |only QuickJSR-1.2.2/QuickJSR/src/quickjs/examples/pi_bigdecimal.js |only QuickJSR-1.2.2/QuickJSR/src/quickjs/examples/pi_bigfloat.js |only QuickJSR-1.2.2/QuickJSR/src/quickjs/qjscalc.js |only QuickJSR-1.2.2/QuickJSR/src/quickjs/readme.txt |only QuickJSR-1.2.2/QuickJSR/src/quickjs/release.sh |only QuickJSR-1.2.2/QuickJSR/src/quickjs/test262o.conf |only QuickJSR-1.2.2/QuickJSR/src/quickjs/test262o_errors.txt |only QuickJSR-1.2.2/QuickJSR/src/quickjs/tests/test_bignum.js |only QuickJSR-1.2.2/QuickJSR/src/quickjs/tests/test_op_overloading.js |only QuickJSR-1.2.2/QuickJSR/src/quickjs/tests/test_qjscalc.js |only QuickJSR-1.3.0/QuickJSR/DESCRIPTION | 13 QuickJSR-1.3.0/QuickJSR/MD5 | 152 QuickJSR-1.3.0/QuickJSR/NEWS.md | 86 QuickJSR-1.3.0/QuickJSR/R/flags.R | 5 QuickJSR-1.3.0/QuickJSR/R/qjs.R | 8 QuickJSR-1.3.0/QuickJSR/R/utils.R | 9 QuickJSR-1.3.0/QuickJSR/build/vignette.rds |binary QuickJSR-1.3.0/QuickJSR/inst/doc/working_with_js_types.html | 34 QuickJSR-1.3.0/QuickJSR/inst/include/cpp11/R.hpp | 4 QuickJSR-1.3.0/QuickJSR/inst/include/cpp11/environment.hpp | 5 QuickJSR-1.3.0/QuickJSR/inst/include/quickjs_helpers.hpp | 10 QuickJSR-1.3.0/QuickJSR/inst/include/quickjsr/JSCommonType.hpp | 12 QuickJSR-1.3.0/QuickJSR/inst/include/quickjsr/JSValue_Date.hpp | 20 QuickJSR-1.3.0/QuickJSR/inst/include/quickjsr/JSValue_to_Cpp.hpp | 30 QuickJSR-1.3.0/QuickJSR/inst/include/quickjsr/JSValue_to_SEXP.hpp | 23 QuickJSR-1.3.0/QuickJSR/inst/include/quickjsr/JS_SEXP.hpp | 4 QuickJSR-1.3.0/QuickJSR/inst/include/quickjsr/SEXP_to_JSValue.hpp | 53 QuickJSR-1.3.0/QuickJSR/src/Makevars | 48 QuickJSR-1.3.0/QuickJSR/src/init.cpp | 2 QuickJSR-1.3.0/QuickJSR/src/libquickjs.c |only QuickJSR-1.3.0/QuickJSR/src/quickjs/CMakeLists.txt |only QuickJSR-1.3.0/QuickJSR/src/quickjs/LICENSE | 4 QuickJSR-1.3.0/QuickJSR/src/quickjs/README.md |only QuickJSR-1.3.0/QuickJSR/src/quickjs/cutils.c | 978 QuickJSR-1.3.0/QuickJSR/src/quickjs/cutils.h | 323 QuickJSR-1.3.0/QuickJSR/src/quickjs/dirent_compat.h |only QuickJSR-1.3.0/QuickJSR/src/quickjs/doc/quickjs.texi | 104 QuickJSR-1.3.0/QuickJSR/src/quickjs/examples/fib.c | 6 QuickJSR-1.3.0/QuickJSR/src/quickjs/examples/pi_bigint.js | 2 QuickJSR-1.3.0/QuickJSR/src/quickjs/examples/point.c | 29 QuickJSR-1.3.0/QuickJSR/src/quickjs/gen |only QuickJSR-1.3.0/QuickJSR/src/quickjs/getopt_compat.h |only QuickJSR-1.3.0/QuickJSR/src/quickjs/libbf.c | 628 QuickJSR-1.3.0/QuickJSR/src/quickjs/libbf.h | 28 QuickJSR-1.3.0/QuickJSR/src/quickjs/libregexp-opcode.h | 8 QuickJSR-1.3.0/QuickJSR/src/quickjs/libregexp.c | 761 QuickJSR-1.3.0/QuickJSR/src/quickjs/libregexp.h | 18 QuickJSR-1.3.0/QuickJSR/src/quickjs/libunicode-table.h | 128 QuickJSR-1.3.0/QuickJSR/src/quickjs/libunicode.c | 488 QuickJSR-1.3.0/QuickJSR/src/quickjs/libunicode.h | 13 QuickJSR-1.3.0/QuickJSR/src/quickjs/list.h | 4 QuickJSR-1.3.0/QuickJSR/src/quickjs/qjs.c | 244 QuickJSR-1.3.0/QuickJSR/src/quickjs/qjsc.c | 395 QuickJSR-1.3.0/QuickJSR/src/quickjs/quickjs-atom.h | 30 QuickJSR-1.3.0/QuickJSR/src/quickjs/quickjs-c-atomics.h |only QuickJSR-1.3.0/QuickJSR/src/quickjs/quickjs-libc.c | 991 QuickJSR-1.3.0/QuickJSR/src/quickjs/quickjs-libc.h | 11 QuickJSR-1.3.0/QuickJSR/src/quickjs/quickjs-opcode.h | 47 QuickJSR-1.3.0/QuickJSR/src/quickjs/quickjs.c |19496 ++++------ QuickJSR-1.3.0/QuickJSR/src/quickjs/quickjs.h | 854 QuickJSR-1.3.0/QuickJSR/src/quickjs/repl.js | 1056 QuickJSR-1.3.0/QuickJSR/src/quickjs/run-test262.c | 238 QuickJSR-1.3.0/QuickJSR/src/quickjs/test262-fast.conf |only QuickJSR-1.3.0/QuickJSR/src/quickjs/test262.conf | 154 QuickJSR-1.3.0/QuickJSR/src/quickjs/test262_errors.txt | 16 QuickJSR-1.3.0/QuickJSR/src/quickjs/tests/bjson.c | 14 QuickJSR-1.3.0/QuickJSR/src/quickjs/tests/function_source.js |only QuickJSR-1.3.0/QuickJSR/src/quickjs/tests/microbench.js | 160 QuickJSR-1.3.0/QuickJSR/src/quickjs/tests/test_bigint.js |only QuickJSR-1.3.0/QuickJSR/src/quickjs/tests/test_bjson.js | 36 QuickJSR-1.3.0/QuickJSR/src/quickjs/tests/test_builtin.js | 444 QuickJSR-1.3.0/QuickJSR/src/quickjs/tests/test_closure.js | 4 QuickJSR-1.3.0/QuickJSR/src/quickjs/tests/test_conv.c |only QuickJSR-1.3.0/QuickJSR/src/quickjs/tests/test_language.js | 215 QuickJSR-1.3.0/QuickJSR/src/quickjs/tests/test_loop.js | 26 QuickJSR-1.3.0/QuickJSR/src/quickjs/tests/test_queue_microtask.js |only QuickJSR-1.3.0/QuickJSR/src/quickjs/tests/test_std.js | 125 QuickJSR-1.3.0/QuickJSR/src/quickjs/tests/test_worker.js | 5 QuickJSR-1.3.0/QuickJSR/src/quickjs/tests/test_worker_module.js | 5 QuickJSR-1.3.0/QuickJSR/src/quickjs/unicode_download.sh | 2 QuickJSR-1.3.0/QuickJSR/src/quickjs/unicode_gen.c | 388 QuickJSR-1.3.0/QuickJSR/src/quickjs/v8-tweak.js |only QuickJSR-1.3.0/QuickJSR/src/quickjs/v8.js |only QuickJSR-1.3.0/QuickJSR/src/quickjs/v8.sh |only QuickJSR-1.3.0/QuickJSR/src/quickjs/v8.txt |only QuickJSR-1.3.0/QuickJSR/src/quickjsr.cpp | 10 90 files changed, 13936 insertions(+), 15070 deletions(-)
Title: Fit Models Derived from Point Processes to Species Distributions
using 'inlabru'
Description: Integrated species distribution modeling is a rising field in quantitative ecology thanks to significant rises in the quantity of data available, increases in computational speed and the proven benefits of using such models.
Despite this, the general software to help ecologists construct such models in an easy-to-use framework is lacking.
We therefore introduce the R package 'PointedSDMs': which provides the tools to help ecologists set up integrated models and perform inference on them.
There are also functions within the package to help run spatial cross-validation for model selection, as well as generic plotting and predicting functions.
An introduction to these methods is discussed in Issac, Jarzyna, Keil, Dambly, Boersch-Supan, Browning, Freeman, Golding, Guillera-Arroita, Henrys, Jarvis, Lahoz-Monfort, Pagel, Pescott, Schmucki, Simmonds and O’Hara (2020) <doi:10.1016/j.tree.2019.08.006>.
Author: Philip Mostert [aut, cre],
Bob O'hara [aut]
Maintainer: Philip Mostert <philip.s.mostert@ntnu.no>
Diff between PointedSDMs versions 1.3.2 dated 2024-02-02 and 2.1.0 dated 2024-07-08
PointedSDMs-1.3.2/PointedSDMs/R/dataSDM.R |only PointedSDMs-1.3.2/PointedSDMs/man/dataSDM.Rd |only PointedSDMs-1.3.2/PointedSDMs/tests/testthat/testthat_dataSDM.R |only PointedSDMs-2.1.0/PointedSDMs/DESCRIPTION | 10 PointedSDMs-2.1.0/PointedSDMs/MD5 | 141 +- PointedSDMs-2.1.0/PointedSDMs/NAMESPACE | 26 PointedSDMs-2.1.0/PointedSDMs/R/blockedCV.R | 73 + PointedSDMs-2.1.0/PointedSDMs/R/bruSDM_outputs.R | 38 PointedSDMs-2.1.0/PointedSDMs/R/bruSDM_predict.R | 165 ++ PointedSDMs-2.1.0/PointedSDMs/R/data.SetophagaData.rda.R | 2 PointedSDMs-2.1.0/PointedSDMs/R/data2ENV.R | 2 PointedSDMs-2.1.0/PointedSDMs/R/dataOrganize.R | 265 +++- PointedSDMs-2.1.0/PointedSDMs/R/dataSet.R | 187 +-- PointedSDMs-2.1.0/PointedSDMs/R/datasetOut.R | 87 - PointedSDMs-2.1.0/PointedSDMs/R/fitISDM.R | 48 PointedSDMs-2.1.0/PointedSDMs/R/intModel.R | 138 -- PointedSDMs-2.1.0/PointedSDMs/R/makeFormulaComps.R |only PointedSDMs-2.1.0/PointedSDMs/R/makeLhoods.R | 16 PointedSDMs-2.1.0/PointedSDMs/R/modISDM_predict.R |only PointedSDMs-2.1.0/PointedSDMs/R/modMarks_predict.R |only PointedSDMs-2.1.0/PointedSDMs/R/modSpecies_predict.R |only PointedSDMs-2.1.0/PointedSDMs/R/modelOutputs.R |only PointedSDMs-2.1.0/PointedSDMs/R/reduceComps.R |only PointedSDMs-2.1.0/PointedSDMs/R/removeFormula.R |only PointedSDMs-2.1.0/PointedSDMs/R/specifyISDM.R |only PointedSDMs-2.1.0/PointedSDMs/R/specifyMarks.R |only PointedSDMs-2.1.0/PointedSDMs/R/specifySpecies.R |only PointedSDMs-2.1.0/PointedSDMs/R/startISDM.R |only PointedSDMs-2.1.0/PointedSDMs/R/startMarks.R |only PointedSDMs-2.1.0/PointedSDMs/R/startSpecies.R |only PointedSDMs-2.1.0/PointedSDMs/README.md | 144 +- PointedSDMs-2.1.0/PointedSDMs/build/vignette.rds |binary PointedSDMs-2.1.0/PointedSDMs/data/SolitaryTinamou.rda |binary PointedSDMs-2.1.0/PointedSDMs/inst/doc/Marked_Point_Process.R | 86 - PointedSDMs-2.1.0/PointedSDMs/inst/doc/Marked_Point_Process.Rmd | 87 - PointedSDMs-2.1.0/PointedSDMs/inst/doc/Marked_Point_Process.html | 126 +- PointedSDMs-2.1.0/PointedSDMs/inst/doc/Setophaga.R | 205 ++- PointedSDMs-2.1.0/PointedSDMs/inst/doc/Setophaga.Rmd | 312 +++-- PointedSDMs-2.1.0/PointedSDMs/inst/doc/Setophaga.html | 601 +++++----- PointedSDMs-2.1.0/PointedSDMs/inst/doc/Solitary_tinamou.R | 37 PointedSDMs-2.1.0/PointedSDMs/inst/doc/Solitary_tinamou.Rmd | 47 PointedSDMs-2.1.0/PointedSDMs/inst/doc/Solitary_tinamou.html | 66 - PointedSDMs-2.1.0/PointedSDMs/inst/doc/Spatiotemporal_example.R | 47 PointedSDMs-2.1.0/PointedSDMs/inst/doc/Spatiotemporal_example.Rmd | 49 PointedSDMs-2.1.0/PointedSDMs/inst/doc/Spatiotemporal_example.html | 115 + PointedSDMs-2.1.0/PointedSDMs/man/BBA.Rd | 2 PointedSDMs-2.1.0/PointedSDMs/man/blockedCV.Rd | 7 PointedSDMs-2.1.0/PointedSDMs/man/dataOrganize.Rd | 13 PointedSDMs-2.1.0/PointedSDMs/man/dataSet.Rd | 4 PointedSDMs-2.1.0/PointedSDMs/man/datasetOut.Rd | 7 PointedSDMs-2.1.0/PointedSDMs/man/figures/README-plot-1.png |binary PointedSDMs-2.1.0/PointedSDMs/man/figures/README-predict_and_plot-1.png |binary PointedSDMs-2.1.0/PointedSDMs/man/intModel.Rd | 25 PointedSDMs-2.1.0/PointedSDMs/man/makeFormulaComps.Rd |only PointedSDMs-2.1.0/PointedSDMs/man/modISDM-class.Rd |only PointedSDMs-2.1.0/PointedSDMs/man/modISDM_predict-class.Rd |only PointedSDMs-2.1.0/PointedSDMs/man/modMarks-class.Rd |only PointedSDMs-2.1.0/PointedSDMs/man/modMarks_predict-class.Rd |only PointedSDMs-2.1.0/PointedSDMs/man/modSpecies-class.Rd |only PointedSDMs-2.1.0/PointedSDMs/man/modSpecies_predict-class.Rd |only PointedSDMs-2.1.0/PointedSDMs/man/plot.Rd | 112 + PointedSDMs-2.1.0/PointedSDMs/man/predict.Rd | 161 ++ PointedSDMs-2.1.0/PointedSDMs/man/print.modISDM.Rd |only PointedSDMs-2.1.0/PointedSDMs/man/print.modMarks.Rd |only PointedSDMs-2.1.0/PointedSDMs/man/print.modSpecies.Rd |only PointedSDMs-2.1.0/PointedSDMs/man/reduceComps.Rd |only PointedSDMs-2.1.0/PointedSDMs/man/removeFormula.Rd |only PointedSDMs-2.1.0/PointedSDMs/man/specifyISDM.Rd |only PointedSDMs-2.1.0/PointedSDMs/man/specifyMarks.Rd |only PointedSDMs-2.1.0/PointedSDMs/man/specifySpecies.Rd |only PointedSDMs-2.1.0/PointedSDMs/man/startISDM.Rd |only PointedSDMs-2.1.0/PointedSDMs/man/startMarks.Rd |only PointedSDMs-2.1.0/PointedSDMs/man/startSpecies.Rd |only PointedSDMs-2.1.0/PointedSDMs/man/summary.Rd | 21 PointedSDMs-2.1.0/PointedSDMs/tests/testthat/testthat_blockedCV.R | 24 PointedSDMs-2.1.0/PointedSDMs/tests/testthat/testthat_dataOrganize.R | 238 +++ PointedSDMs-2.1.0/PointedSDMs/tests/testthat/testthat_dataSet.R | 11 PointedSDMs-2.1.0/PointedSDMs/tests/testthat/testthat_datasetOut.R | 28 PointedSDMs-2.1.0/PointedSDMs/tests/testthat/testthat_fitISDM.R | 112 + PointedSDMs-2.1.0/PointedSDMs/tests/testthat/testthat_intModel.R | 47 PointedSDMs-2.1.0/PointedSDMs/tests/testthat/testthat_makeFormulaComps.R |only PointedSDMs-2.1.0/PointedSDMs/tests/testthat/testthat_makeLhoods.R | 23 PointedSDMs-2.1.0/PointedSDMs/tests/testthat/testthat_specifyISDM.R |only PointedSDMs-2.1.0/PointedSDMs/tests/testthat/testthat_specifyMarks.R |only PointedSDMs-2.1.0/PointedSDMs/tests/testthat/testthat_specifySpecies.R |only PointedSDMs-2.1.0/PointedSDMs/tests/testthat/testthat_startISDM.R |only PointedSDMs-2.1.0/PointedSDMs/tests/testthat/testthat_startMarks.R |only PointedSDMs-2.1.0/PointedSDMs/tests/testthat/testthat_startSpecies.R |only PointedSDMs-2.1.0/PointedSDMs/vignettes/Marked_Point_Process.Rmd | 87 - PointedSDMs-2.1.0/PointedSDMs/vignettes/Setophaga.Rmd | 312 +++-- PointedSDMs-2.1.0/PointedSDMs/vignettes/Solitary_tinamou.Rmd | 47 PointedSDMs-2.1.0/PointedSDMs/vignettes/Spatiotemporal_example.Rmd | 49 92 files changed, 2906 insertions(+), 1544 deletions(-)
Title: Create Useful .gitignore Files for your Project
Description: Simple interface to query gitignore.io to fetch
gitignore templates that can be included in the .gitignore file. More
than 450 templates are currently available.
Author: Philippe Massicotte [aut, cre]
,
Amanda Dobbyn [rev],
Mauro Lepore [rev]
Maintainer: Philippe Massicotte <pmassicotte@hotmail.com>
Diff between gitignore versions 0.1.6 dated 2023-12-12 and 0.1.7 dated 2024-07-08
gitignore-0.1.6/gitignore/README.md |only gitignore-0.1.7/gitignore/DESCRIPTION | 12 gitignore-0.1.7/gitignore/MD5 | 17 gitignore-0.1.7/gitignore/NEWS.md | 12 gitignore-0.1.7/gitignore/R/gi_available_templates.R | 4 gitignore-0.1.7/gitignore/R/gi_fetch_templates.R | 17 gitignore-0.1.7/gitignore/R/gi_write_gitignore.R | 31 - gitignore-0.1.7/gitignore/build/vignette.rds |binary gitignore-0.1.7/gitignore/inst/doc/introduction.html | 589 +++++++++---------- gitignore-0.1.7/gitignore/man/gitignore-package.Rd | 1 10 files changed, 348 insertions(+), 335 deletions(-)
Title: Use R Markdown to Write your "Rprofile"
Description: A simple way to write ".Rprofile" code in an R Markdown file and
have it knit to the correct location for your operating system.
Author: James Laird-Smith [aut, cre, cph]
Maintainer: James Laird-Smith <jameslairdsmith@gmail.com>
Diff between customiser versions 0.1.0 dated 2024-06-24 and 0.1.1 dated 2024-07-08
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/customiser.R | 1 - man/customiser-package.Rd | 4 ++-- tests/testthat/test-customiser.R | 10 ++++++++++ 6 files changed, 24 insertions(+), 11 deletions(-)
Title: Analysis of Convergent Evolution
Description: Quantifies and assesses the significance of convergent evolution using multiple methods and measures as described in Stayton (2015) <DOI: 10.1111/evo.12729> and Grossnickle et al. 2023. Also displays results in various ways.
Author: William Brightly [aut],
C. Tristan Stayton [aut, cre]
Maintainer: C. Tristan Stayton <tstayton@bucknell.edu>
Diff between convevol versions 2.0.1 dated 2023-06-30 and 2.2.0 dated 2024-07-08
convevol-2.0.1/convevol/R/calcConvCt.r |only convevol-2.0.1/convevol/R/convSig.r |only convevol-2.2.0/convevol/DESCRIPTION | 23 +++- convevol-2.2.0/convevol/MD5 | 74 ++++++++++------ convevol-2.2.0/convevol/NAMESPACE | 16 +++ convevol-2.2.0/convevol/R/allmaxdist.R |only convevol-2.2.0/convevol/R/ancestrallineages.R |only convevol-2.2.0/convevol/R/calcConv.R | 106 +++++++++++------------ convevol-2.2.0/convevol/R/calcConvCt.R |only convevol-2.2.0/convevol/R/calcCs.R | 2 convevol-2.2.0/convevol/R/calcCsCt.R | 4 convevol-2.2.0/convevol/R/calcchanges.R |only convevol-2.2.0/convevol/R/convSig.R |only convevol-2.2.0/convevol/R/convSigCt.R | 102 +++++++++++++--------- convevol-2.2.0/convevol/R/convnum.R | 8 + convevol-2.2.0/convevol/R/convnumsig.R | 2 convevol-2.2.0/convevol/R/convrat.R |only convevol-2.2.0/convevol/R/convratsig.R |only convevol-2.2.0/convevol/R/findanc.R |only convevol-2.2.0/convevol/R/labelstonumbers.R |only convevol-2.2.0/convevol/R/maxdist.R |only convevol-2.2.0/convevol/R/multianc.R | 2 convevol-2.2.0/convevol/R/phy.r |only convevol-2.2.0/convevol/R/plot2D.R |only convevol-2.2.0/convevol/R/plotCt.r | 3 convevol-2.2.0/convevol/R/pullNodeSeq.R | 2 convevol-2.2.0/convevol/R/pwCheck.R |only convevol-2.2.0/convevol/R/trait.r |only convevol-2.2.0/convevol/data |only convevol-2.2.0/convevol/man/allmaxdist.Rd |only convevol-2.2.0/convevol/man/ancestrallineages.Rd |only convevol-2.2.0/convevol/man/calcConv.Rd | 14 +-- convevol-2.2.0/convevol/man/calcConvCt.Rd | 47 +++++++--- convevol-2.2.0/convevol/man/calcCs.Rd | 12 +- convevol-2.2.0/convevol/man/calcCsCt.Rd | 4 convevol-2.2.0/convevol/man/calcchanges.Rd |only convevol-2.2.0/convevol/man/convSig.Rd | 20 ++-- convevol-2.2.0/convevol/man/convSigCt.Rd | 51 ++++++++--- convevol-2.2.0/convevol/man/convnum.Rd | 2 convevol-2.2.0/convevol/man/convnumsig.Rd | 2 convevol-2.2.0/convevol/man/convrat.Rd |only convevol-2.2.0/convevol/man/convratsig.Rd |only convevol-2.2.0/convevol/man/findanc.Rd |only convevol-2.2.0/convevol/man/labelstonumbers.Rd |only convevol-2.2.0/convevol/man/maxdist.Rd |only convevol-2.2.0/convevol/man/multianc.Rd | 2 convevol-2.2.0/convevol/man/phy.Rd |only convevol-2.2.0/convevol/man/plot2D.Rd |only convevol-2.2.0/convevol/man/plotCt.Rd | 14 +++ convevol-2.2.0/convevol/man/pullNodeSeq.Rd | 2 convevol-2.2.0/convevol/man/pwCheck.Rd |only convevol-2.2.0/convevol/man/trait.Rd |only 52 files changed, 322 insertions(+), 192 deletions(-)
Title: Optimum Contribution Selection and Population Genetics
Description: A framework for the optimization of breeding programs via optimum contribution selection and mate allocation. An easy to use set of function for computation of optimum contributions of selection candidates, and of the population genetic parameters to be optimized. These parameters can be estimated using pedigree or genotype information, and include kinships, kinships at native haplotype segments, and breed composition of crossbred individuals. They are suitable for managing genetic diversity, removing introgressed genetic material, and accelerating genetic gain. Additionally, functions are provided for computing genetic contributions from ancestors, inbreeding coefficients, the native effective size, the native genome equivalent, pedigree completeness, and for preparing and plotting pedigrees. The methods are described in:\n Wellmann, R., and Pfeiffer, I. (2009) <doi:10.1017/S0016672309000202>.\n Wellmann, R., and Bennewitz, J. (2011) <doi:10.2527/jas.2010-3709>.\n Wellmann [...truncated...]
Author: Robin Wellmann [aut, cre]
Maintainer: Robin Wellmann <r.wellmann@uni-hohenheim.de>
Diff between optiSel versions 2.0.8 dated 2024-06-12 and 2.0.9 dated 2024-07-08
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/makeA.R | 3 +-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/ocs-vignette.html | 22 +++++++++++----------- inst/doc/ped-vignette.html | 4 ++-- inst/doc/seg-vignette.html | 4 ++-- src/rcpp_makeA_lowMem.cpp | 7 ++++++- 9 files changed, 34 insertions(+), 30 deletions(-)
Title: Kaplan-Meier Plot with 'ggplot2'
Description: The function 'jskm()' creates publication quality Kaplan-Meier plot with at risk tables below. 'svyjskm()' provides plot for weighted Kaplan-Meier estimator.
Author: Jinseob Kim [aut, cre] ,
yoonkyoung Chun [aut],
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jskm versions 0.5.3 dated 2024-01-26 and 0.5.5 dated 2024-07-08
DESCRIPTION | 13 +++++++------ MD5 | 18 +++++++++--------- NEWS.md | 8 ++++++++ R/jskm.R | 33 +++++++++++++++++++++++++-------- R/svyjskm.R | 32 +++++++++++++++++++++++++------- README.md | 3 +++ build/vignette.rds |binary inst/doc/jskm.html | 32 +++++++++++++++++--------------- man/jskm.Rd | 2 +- man/svyjskm.Rd | 2 +- 10 files changed, 96 insertions(+), 47 deletions(-)
Title: Advanced and Fast Data Transformation
Description: A C/C++ based package for advanced data transformation and
statistical computing in R that is extremely fast, class-agnostic, robust and
programmer friendly. Core functionality includes a rich set of S3 generic grouped
and weighted statistical functions for vectors, matrices and data frames, which
provide efficient low-level vectorizations, OpenMP multithreading, and skip missing
values by default. These are integrated with fast grouping and ordering algorithms
(also callable from C), and efficient data manipulation functions. The package also
provides a flexible and rigorous approach to time series and panel data in R.
It further includes fast functions for common statistical procedures, detailed
(grouped, weighted) summary statistics, powerful tools to work with nested data,
fast data object conversions, functions for memory efficient R programming, and
helpers to effectively deal with variable labels, attributes, and missing data.
It is well integrated with base R classes, 'dplyr'/' [...truncated...]
Author: Sebastian Krantz [aut, cre] ,
Matt Dowle [ctb],
Arun Srinivasan [ctb],
Morgan Jacob [ctb],
Dirk Eddelbuettel [ctb],
Laurent Berge [ctb],
Kevin Tappe [ctb],
R Core Team and contributors worldwide [ctb],
Martyn Plummer [cph],
1999-2016 The R Core Team [...truncated...]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>
Diff between collapse versions 2.0.14 dated 2024-05-24 and 2.0.15 dated 2024-07-08
collapse-2.0.14/collapse/vignettes/AREA_Ag.png |only collapse-2.0.15/collapse/DESCRIPTION | 10 collapse-2.0.15/collapse/MD5 | 142 +++---- collapse-2.0.15/collapse/NEWS.md | 55 ++ collapse-2.0.15/collapse/R/BY.R | 2 collapse-2.0.15/collapse/R/collap.R | 18 collapse-2.0.15/collapse/R/fhdbetween_fhdwithin.R | 2 collapse-2.0.15/collapse/R/fsubset_ftransform_fmutate.R | 4 collapse-2.0.15/collapse/R/join.R | 24 + collapse-2.0.15/collapse/R/list_functions.R | 6 collapse-2.0.15/collapse/R/pivot.R | 30 + collapse-2.0.15/collapse/R/recode_replace.R | 2 collapse-2.0.15/collapse/R/unlist2d.R | 2 collapse-2.0.15/collapse/R/zzz.R | 2 collapse-2.0.15/collapse/inst/WORDLIST |only collapse-2.0.15/collapse/inst/doc/collapse_and_sf.Rmd | 3 collapse-2.0.15/collapse/inst/doc/collapse_and_sf.html | 5 collapse-2.0.15/collapse/inst/doc/collapse_documentation.Rmd | 4 collapse-2.0.15/collapse/inst/doc/collapse_documentation.html | 10 collapse-2.0.15/collapse/inst/doc/collapse_for_tidyverse_users.Rmd | 2 collapse-2.0.15/collapse/inst/doc/collapse_for_tidyverse_users.html | 19 collapse-2.0.15/collapse/inst/doc/collapse_object_handling.Rmd | 2 collapse-2.0.15/collapse/inst/doc/collapse_object_handling.html | 4 collapse-2.0.15/collapse/man/collapse-renamed.Rd | 4 collapse-2.0.15/collapse/man/fast-statistical-functions.Rd | 31 - collapse-2.0.15/collapse/man/flm.Rd | 5 collapse-2.0.15/collapse/man/join.Rd | 19 collapse-2.0.15/collapse/man/pivot.Rd | 25 + collapse-2.0.15/collapse/src/ExportSymbols.c | 4 collapse-2.0.15/collapse/src/TRA.c | 40 +- collapse-2.0.15/collapse/src/base_radixsort.c | 49 -- collapse-2.0.15/collapse/src/base_radixsort.h | 52 ++ collapse-2.0.15/collapse/src/collapse_c.h | 2 collapse-2.0.15/collapse/src/data.table.h | 5 collapse-2.0.15/collapse/src/data.table_rbindlist.c | 18 collapse-2.0.15/collapse/src/data.table_subset.c | 16 collapse-2.0.15/collapse/src/data.table_utils.c | 12 collapse-2.0.15/collapse/src/ffirst.c | 14 collapse-2.0.15/collapse/src/flag.cpp | 27 - collapse-2.0.15/collapse/src/flast.c | 14 collapse-2.0.15/collapse/src/fmean.c | 6 collapse-2.0.15/collapse/src/fmode.c | 18 collapse-2.0.15/collapse/src/fndistinct.c | 12 collapse-2.0.15/collapse/src/fnobs.c | 8 collapse-2.0.15/collapse/src/fnth_fmedian_fquantile.c | 6 collapse-2.0.15/collapse/src/fprod.c | 4 collapse-2.0.15/collapse/src/fscale.cpp | 2 collapse-2.0.15/collapse/src/fsum.c | 8 collapse-2.0.15/collapse/src/fvar_fsd.cpp | 2 collapse-2.0.15/collapse/src/gsplit.c | 24 - collapse-2.0.15/collapse/src/handle_attributes.c | 4 collapse-2.0.15/collapse/src/join.c | 4 collapse-2.0.15/collapse/src/kit.h | 1 collapse-2.0.15/collapse/src/kit_dup.c | 16 collapse-2.0.15/collapse/src/match.c | 27 - collapse-2.0.15/collapse/src/pivot.c | 194 +++++++--- collapse-2.0.15/collapse/src/programming.c | 37 - collapse-2.0.15/collapse/src/small_helper.c | 17 collapse-2.0.15/collapse/tests/testthat/test-GRP.R | 1 collapse-2.0.15/collapse/tests/testthat/test-collap.R | 12 collapse-2.0.15/collapse/tests/testthat/test-fbetween-fwithin-B-W.R | 4 collapse-2.0.15/collapse/tests/testthat/test-fmatch.R | 4 collapse-2.0.15/collapse/tests/testthat/test-fscale-STD.R | 2 collapse-2.0.15/collapse/tests/testthat/test-fvar-fsd.R | 10 collapse-2.0.15/collapse/tests/testthat/test-indexing.R | 17 collapse-2.0.15/collapse/tests/testthat/test-misc.R | 1 collapse-2.0.15/collapse/tests/testthat/test-miscellaneous-issues.R | 46 +- collapse-2.0.15/collapse/tests/testthat/test-pivot.R | 46 +- collapse-2.0.15/collapse/tests/testthat/test-qtab.R | 2 collapse-2.0.15/collapse/vignettes/collapse_and_sf.Rmd | 3 collapse-2.0.15/collapse/vignettes/collapse_documentation.Rmd | 4 collapse-2.0.15/collapse/vignettes/collapse_for_tidyverse_users.Rmd | 2 collapse-2.0.15/collapse/vignettes/collapse_object_handling.Rmd | 2 73 files changed, 734 insertions(+), 497 deletions(-)
Title: Bayesian Regression Modeling Strategies
Description: A Bayesian companion to the 'rms' package, 'rmsb' provides Bayesian model fitting, post-fit estimation, and graphics. It implements Bayesian regression models whose fit objects can be processed by 'rms' functions such as 'contrast()', 'summary()', 'Predict()', 'nomogram()', and 'latex()'. The fitting function currently implemented in the package is 'blrm()' for Bayesian logistic binary and ordinal regression with optional clustering, censoring, and departures from the proportional odds assumption using the partial proportional odds model of Peterson and Harrell (1990) <https://www.jstor.org/stable/2347760>.
Author: Frank Harrell [aut, cre] ,
Ben Goodrich [ctb] ,
Ben Bolker [ctb] ,
Doug Bates [ctb]
Maintainer: Frank Harrell <fh@fharrell.com>
Diff between rmsb versions 1.1-0 dated 2024-03-12 and 1.1-1 dated 2024-07-08
DESCRIPTION | 10 MD5 | 27 - NEWS | 6 R/blrm.r | 43 +- R/stackMI.r | 2 R/stanMisc.r | 2 inst/stan/lrmconppot.stan | 2 inst/tests/comp-mle.r |only man/blrm.Rd | 13 man/predict.blrm.Rd | 8 man/stackMI.Rd | 2 man/vcov.rmsb.Rd | 2 src/stanExports_lrmconppo.h | 722 +++++++++++++++++++++++-------------------- src/stanExports_lrmconppot.h | 718 +++++++++++++++++++++++------------------- src/stanExports_lrmcppo.h | 240 +++++++------- 15 files changed, 980 insertions(+), 817 deletions(-)
Title: LUCID with Multiple Omics Data
Description: An implementation of estimating the Latent Unknown Clusters By Integrating Multi-omics Data (LUCID) model (Peng (2019) <doi:10.1093/bioinformatics/btz667>). LUCID conducts integrated clustering using exposures, omics information (and outcome information as an option). This package implements three different integration strategies for multi-omics data analysis within the LUCID framework: LUCID early integration (the original LUCID model), LUCID in parallel (intermediate integration), and LUCID in serial (late integration). Automated model selection for each LUCID model is available to obtain the optimal number of latent clusters, and an integrated imputation approach is implemented to handle sporadic and list-wise missingness in multi-omics data. Lasso-type regularity for exposure and omics features were added. S3 methods for summary and plotting functions were fixed.
Author: Qiran Jia [aut, cre] ,
Yinqi Zhao [aut] ,
David Conti [ths] ,
Jesse Goodrich [ctb]
Maintainer: Qiran Jia <qiranjia@usc.edu>
Diff between LUCIDus versions 3.0.1 dated 2023-10-31 and 3.0.2 dated 2024-07-08
LUCIDus-3.0.1/LUCIDus/README.md |only LUCIDus-3.0.1/LUCIDus/man/plot_lucid.Rd |only LUCIDus-3.0.1/LUCIDus/man/print.sumlucid.Rd |only LUCIDus-3.0.1/LUCIDus/man/summary_lucid.Rd |only LUCIDus-3.0.1/LUCIDus/tests/testthat/test-Serial-binary.R |only LUCIDus-3.0.1/LUCIDus/tests/testthat/test-Serial-normal.R |only LUCIDus-3.0.2/LUCIDus/DESCRIPTION | 10 LUCIDus-3.0.2/LUCIDus/LICENSE | 2 LUCIDus-3.0.2/LUCIDus/MD5 | 77 ++-- LUCIDus-3.0.2/LUCIDus/NAMESPACE | 18 - LUCIDus-3.0.2/LUCIDus/R/boot_lucid.R | 3 LUCIDus-3.0.2/LUCIDus/R/early_estep.R | 1 LUCIDus-3.0.2/LUCIDus/R/g_computation_utility.R |only LUCIDus-3.0.2/LUCIDus/R/lucid.R | 14 LUCIDus-3.0.2/LUCIDus/R/plot_lucid.R | 105 +++--- LUCIDus-3.0.2/LUCIDus/R/pred_lucid.R | 174 +++++++--- LUCIDus-3.0.2/LUCIDus/R/predict_lucid_all.R | 79 +++- LUCIDus-3.0.2/LUCIDus/R/summary.R | 161 +++++++-- LUCIDus-3.0.2/LUCIDus/R/summary_auxi_fxn_serial.R | 6 LUCIDus-3.0.2/LUCIDus/R/tune_lucid.R | 18 - LUCIDus-3.0.2/LUCIDus/man/boot_lucid.Rd | 3 LUCIDus-3.0.2/LUCIDus/man/lucid.Rd | 6 LUCIDus-3.0.2/LUCIDus/man/plot.Rd |only LUCIDus-3.0.2/LUCIDus/man/predict_lucid.Rd | 12 LUCIDus-3.0.2/LUCIDus/man/print.sumlucid_early.Rd |only LUCIDus-3.0.2/LUCIDus/man/print.sumlucid_parallel.Rd |only LUCIDus-3.0.2/LUCIDus/man/print.sumlucid_serial.Rd |only LUCIDus-3.0.2/LUCIDus/man/summary.early_lucid.Rd |only LUCIDus-3.0.2/LUCIDus/man/summary.lucid_parallel.Rd |only LUCIDus-3.0.2/LUCIDus/man/summary.lucid_serial.Rd |only LUCIDus-3.0.2/LUCIDus/man/tune_lucid.Rd | 16 LUCIDus-3.0.2/LUCIDus/tests/testthat/test-Serial-binary-missing.R | 16 LUCIDus-3.0.2/LUCIDus/tests/testthat/test-Serial-binary-summary.R | 12 LUCIDus-3.0.2/LUCIDus/tests/testthat/test-g_comp-binary-3-layers.R |only LUCIDus-3.0.2/LUCIDus/tests/testthat/test-gcomp-binary-1-layer.R |only LUCIDus-3.0.2/LUCIDus/tests/testthat/test-gcomp-serial-normal-5-layers.R |only LUCIDus-3.0.2/LUCIDus/tests/testthat/test-lucid-binary-1-layer.R | 4 LUCIDus-3.0.2/LUCIDus/tests/testthat/test-lucid-normal-1-layer.R | 2 LUCIDus-3.0.2/LUCIDus/tests/testthat/test-lucid-normal-3-layers.R | 16 LUCIDus-3.0.2/LUCIDus/tests/testthat/test-lucid-normal-5-layers.R | 2 LUCIDus-3.0.2/LUCIDus/tests/testthat/test-missing-normal-3-layers.R | 36 +- LUCIDus-3.0.2/LUCIDus/tests/testthat/test-plot_lucid_1_layer.R | 4 LUCIDus-3.0.2/LUCIDus/tests/testthat/test-predict-binary-3-layers.R | 1 LUCIDus-3.0.2/LUCIDus/tests/testthat/test-predict-binary-5-layers.R | 6 LUCIDus-3.0.2/LUCIDus/tests/testthat/test-predict-serial-binary-5-layers.R | 4 LUCIDus-3.0.2/LUCIDus/tests/testthat/test-predict_normal_1_layer.R | 8 LUCIDus-3.0.2/LUCIDus/tests/testthat/test-summart-binary-5-layers.R | 12 LUCIDus-3.0.2/LUCIDus/tests/testthat/test-summary-normal-5-layers.R | 11 48 files changed, 556 insertions(+), 283 deletions(-)
Title: Bootstrap a Clustering Solution to Establish the Stability of
the Clusters
Description: Providing a cluster allocation for n samples, either with an $n \times p$ data matrix or an $n \times n$ distance
matrix, a bootstrap procedure is performed. The proportion of bootstrap replicates where a pair of samples
cluster in the same cluster indicates who tightly the samples in a particular cluster clusters together.
Author: Sugnet Lubbe [aut, cre, cph]
Maintainer: Sugnet Lubbe <slubbe@sun.ac.za>
Diff between ClusBoot versions 1.2.1 dated 2023-10-17 and 1.2.2 dated 2024-07-08
DESCRIPTION | 6 +++--- MD5 | 4 ++-- man/clusboot.Rd | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: An Optimal Subset Selection for Distributed Hypothesis Testing
Description: In the era of big data, data redundancy and distributed characteristics present novel challenges to data analysis. This package introduces a method for estimating optimal subsets of redundant distributed data, based on PPCDT (Conjunction of Power and P-value in Distributed Settings). Leveraging PPC technology, this approach can efficiently extract valuable information from redundant distributed data and determine the optimal subset. Experimental results demonstrate that this method not only enhances data quality and utilization efficiency but also assesses its performance effectively. The philosophy of the package is described in Guo G. (2020) <doi:10.1007/s00180-020-00974-4>.
Author: Guangbao Guo [aut, cre, cph],
Jiarui Li [ctb]
Maintainer: Guangbao Guo <ggb11111111@163.com>
Diff between PPCDT versions 0.1.0 dated 2024-05-25 and 0.2.0 dated 2024-07-08
PPCDT-0.1.0/PPCDT/LICENSE |only PPCDT-0.1.0/PPCDT/R/PPCTD.R |only PPCDT-0.1.0/PPCDT/man/PPCTD.Rd |only PPCDT-0.1.0/PPCDT/tests |only PPCDT-0.2.0/PPCDT/DESCRIPTION | 14 ++++++-------- PPCDT-0.2.0/PPCDT/MD5 | 9 +++------ PPCDT-0.2.0/PPCDT/R/PPCDT.R |only PPCDT-0.2.0/PPCDT/man/PPCDT.Rd |only 8 files changed, 9 insertions(+), 14 deletions(-)
Title: Paws Low-Level Amazon Web Services API
Description: Functions for making low-level API requests to Amazon Web Services
<https://aws.amazon.com>. The functions handle building, signing, and
sending requests, and receiving responses. They are designed to help build
higher-level interfaces to individual services, such as Simple Storage
Service (S3).
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.common versions 0.7.3 dated 2024-05-15 and 0.7.4 dated 2024-07-08
DESCRIPTION | 26 +++++++++---------- MD5 | 38 +++++++++++++++-------------- NEWS.md | 27 ++++++++++++++++++++ R/cache.R | 2 + R/credential_providers.R | 37 +++++++++++++++++++++------- R/credential_sso.R | 27 ++++---------------- R/credentials.R | 8 ++++++ R/custom_s3.R | 37 ++++++++++++---------------- R/error.R | 33 +++++++++++++++++++++++-- R/handlers_query.R | 14 +++------- R/head_bucket.R |only R/http_status.R |only R/retry.R | 2 - R/xmlutil.R | 5 ++- man/aws_error.Rd | 4 +-- man/locate_credentials.Rd | 8 ++++++ tests/testthat/test_config.R | 4 +-- tests/testthat/test_credential_providers.R | 21 ++++++++++++++++ tests/testthat/test_custom_s3.R | 17 +++++++++--- tests/testthat/test_handlers_query.R | 2 - tests/testthat/test_xmlutil.R | 21 ++++++++++++---- 21 files changed, 223 insertions(+), 110 deletions(-)
Title: Client for the Deutsche Bundesbank and European Central Bank
APIs
Description: Download data and metadata from the 'Bundesbank SDMX Web
Service API' found at
<https://www.bundesbank.de/en/statistics/time-series-databases/help-for-sdmx-web-service/web-service-interface-data>
and the 'ECB Data Portal API' found at
<https://data.ecb.europa.eu/help/api/overview>.
Author: Maximilian Muecke [aut, cre]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between bbk versions 0.3.0 dated 2024-06-12 and 0.4.0 dated 2024-07-08
bbk-0.3.0/bbk/R/api.R |only bbk-0.3.0/bbk/tests/testthat/test-api.R |only bbk-0.4.0/bbk/DESCRIPTION | 15 +++++--- bbk-0.4.0/bbk/MD5 | 32 ++++++++++-------- bbk-0.4.0/bbk/NAMESPACE | 3 + bbk-0.4.0/bbk/NEWS.md | 4 ++ bbk-0.4.0/bbk/R/bbk-package.R | 1 bbk-0.4.0/bbk/R/bbk.R |only bbk-0.4.0/bbk/R/ecb.R |only bbk-0.4.0/bbk/R/utils.R | 9 +++++ bbk-0.4.0/bbk/README.md | 31 ++++++++++------- bbk-0.4.0/bbk/man/bbk-package.Rd | 4 +- bbk-0.4.0/bbk/man/bbk_data.Rd | 9 ++--- bbk-0.4.0/bbk/man/bbk_metadata.Rd | 8 +++- bbk-0.4.0/bbk/man/bbk_series.Rd | 11 +++--- bbk-0.4.0/bbk/man/ecb_data.Rd |only bbk-0.4.0/bbk/man/ecb_metadata.Rd |only bbk-0.4.0/bbk/man/figures/README-plotting-1.png |binary bbk-0.4.0/bbk/tests/testthat/fixtures/ecb-data-fm.xml |only bbk-0.4.0/bbk/tests/testthat/fixtures/ecb-data.xml |only bbk-0.4.0/bbk/tests/testthat/test-bbk.R |only bbk-0.4.0/bbk/tests/testthat/test-ecb.R |only 22 files changed, 83 insertions(+), 44 deletions(-)
Title: FDR Based Multiple Testing Procedures with Adaptation for
Discrete Tests
Description: Implementations of the multiple testing procedures for discrete
tests described in the paper Döhler, Durand and Roquain (2018) "New FDR
bounds for discrete and heterogeneous tests" <doi:10.1214/18-EJS1441>. The
main procedures of the paper (HSU and HSD), their adaptive counterparts
(AHSU and AHSD), and the HBR variant are available and are coded to take as
input the results of a test procedure from package 'DiscreteTests', or a set
of observed p-values and their discrete support under their nulls. A
shortcut function to obtain such p-values and supports is also provided,
along with a wrapper allowing to apply discrete procedures directly to data.
Author: Sebastian Doehler [aut, ctb],
Florian Junge [aut, ctb, cre],
Guillermo Durand [aut, ctb],
Etienne Roquain [ctb],
Christina Kihn [ctb]
Maintainer: Florian Junge <diso.fbmn@h-da.de>
Diff between DiscreteFDR versions 1.3.7 dated 2024-02-08 and 2.0.0 dated 2024-07-08
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Title: EZ-to-Use Biplots
Description: Provides users with an EZ-to-use platform for representing data
with biplots. Currently principal component analysis (PCA) and canonical variate
analysis (CVA) biplots are included. This is accompanied by various formatting
options for the samples and axes. Alpha-bags and concentration ellipses
are included for visual enhancements and interpretation. For an extensive
discussion on the topic, see Gower, J.C., Lubbe, S. and le Roux, N.J.
(2011, ISBN: 978-0-470-01255-0) Understanding Biplots. Wiley: Chichester.
Author: Sugnet Lubbe [aut, cre, cph] ,
Niel le Roux [aut] ,
Johane Nienkemper-Swanepoel [aut]
,
Raeesa Ganey [aut] ,
Ruan Buys [aut] ,
Zoe-Mae Adams [aut] ,
Peter Manefeldt [aut]
Maintainer: Sugnet Lubbe <muvisu@sun.ac.za>
Diff between biplotEZ versions 1.2.0 dated 2023-11-28 and 2.0 dated 2024-07-08
biplotEZ-1.2.0/biplotEZ/R/bags_ellipses.R |only biplotEZ-2.0/biplotEZ/DESCRIPTION | 38 biplotEZ-2.0/biplotEZ/LICENSE | 2 biplotEZ-2.0/biplotEZ/MD5 | 143 biplotEZ-2.0/biplotEZ/NAMESPACE | 83 biplotEZ-2.0/biplotEZ/R/CA.R |only biplotEZ-2.0/biplotEZ/R/CATPCA.R |only biplotEZ-2.0/biplotEZ/R/CVA.R | 563 + biplotEZ-2.0/biplotEZ/R/MDS.R |only biplotEZ-2.0/biplotEZ/R/PCA.R | 279 biplotEZ-2.0/biplotEZ/R/aesthetics.R | 1421 ++-- biplotEZ-2.0/biplotEZ/R/biplot.R | 1563 +++- biplotEZ-2.0/biplotEZ/R/biplotEZ-package.R |only biplotEZ-2.0/biplotEZ/R/clouds.R |only biplotEZ-2.0/biplotEZ/R/more_biplots.R |only biplotEZ-2.0/biplotEZ/R/plot1D.R |only biplotEZ-2.0/biplotEZ/R/plot2D.R |only biplotEZ-2.0/biplotEZ/R/plot3D.R |only biplotEZ-2.0/biplotEZ/R/plotting.R | 1073 +-- biplotEZ-2.0/biplotEZ/R/translate_axes.R |only biplotEZ-2.0/biplotEZ/R/utility.R | 436 + biplotEZ-2.0/biplotEZ/README.md | 39 biplotEZ-2.0/biplotEZ/build/vignette.rds |binary biplotEZ-2.0/biplotEZ/inst/doc/Biplots_in_1D.R |only 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biplotEZ-2.0/biplotEZ/vignettes/references.bib | 159 103 files changed, 11270 insertions(+), 5534 deletions(-)
Title: Predicting Ethnic Group from Names
Description: Implementation of the race/ethnicity prediction method, described
in "rethnicity: An R package for predicting ethnicity from names"
by Fangzhou Xie (2022) <doi:10.1016/j.softx.2021.100965> and
"Rethnicity: Predicting Ethnicity from Names"
by Fangzhou Xie (2021) <doi:10.48550/arXiv.2109.09228>.
Author: Fangzhou Xie [aut, cre]
Maintainer: Fangzhou Xie <fangzhou.xie@rutgers.edu>
Diff between rethnicity versions 0.2.4 dated 2023-03-13 and 0.2.5 dated 2024-07-08
DESCRIPTION | 11 MD5 | 29 NEWS.md | 15 R/predict_ethnicity.R | 15 README.md | 4 build/vignette.rds |binary inst/doc/advanced_usage.R | 2 inst/doc/advanced_usage.html | 34 inst/doc/introduction.R | 6 inst/doc/introduction.Rmd | 6 inst/doc/introduction.html | 58 inst/include/fplus/fplus.hpp | 9395 +++++++++++++++++++--------------------- inst/include/fplus/fplus.hpp.bk |only src/Makevars | 4 src/predict_ethnicity.cpp | 10 vignettes/introduction.Rmd | 6 16 files changed, 4731 insertions(+), 4864 deletions(-)
Title: Regression Spline Functions and Classes
Description: Constructs basis functions of B-splines, M-splines,
I-splines, convex splines (C-splines), periodic splines,
natural cubic splines, generalized Bernstein polynomials,
their derivatives, and integrals (except C-splines)
by closed-form recursive formulas.
It also contains a C++ head-only library integrated with Rcpp.
See Wang and Yan (2021) <doi:10.6339/21-JDS1020> for details.
Author: Wenjie Wang [aut, cre] ,
Jun Yan [aut]
Maintainer: Wenjie Wang <wang@wwenjie.org>
Diff between splines2 versions 0.5.2 dated 2024-05-09 and 0.5.3 dated 2024-07-08
DESCRIPTION | 8 +++---- MD5 | 12 +++++------ NEWS.md | 8 +++++++ inst/CITATION | 2 - inst/doc/splines2-intro.html | 6 ++--- inst/doc/splines2-wi-rcpp.html | 4 +-- inst/include/splines2Armadillo/PeriodicSpline.h | 26 ++++++++++++------------ 7 files changed, 37 insertions(+), 29 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of
use. Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions. Various
matrix decompositions are provided through optional integration with
LAPACK and ATLAS libraries. The 'RcppArmadillo' package includes the
header files from the templated 'Armadillo' library. Thus users do
not need to install 'Armadillo' itself in order to use
'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is licensed
under Apache License 2; previous releases were under licensed as MPL
2.0 from version 3.800.0 onwards and LGPL-3 prior to that;
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed
under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Dirk Eddelbuettel, Romain Francois, Doug Bates, Binxiang Ni, and Conrad Sanderson
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.12.8.4.0 dated 2024-05-31 and 14.0.0-1 dated 2024-07-08
RcppArmadillo-0.12.8.4.0/RcppArmadillo/inst/include/armadillo_bits/spop_max_bones.hpp |only RcppArmadillo-0.12.8.4.0/RcppArmadillo/inst/include/armadillo_bits/spop_max_meat.hpp |only RcppArmadillo-0.12.8.4.0/RcppArmadillo/inst/include/armadillo_bits/spop_mean_bones.hpp |only RcppArmadillo-0.12.8.4.0/RcppArmadillo/inst/include/armadillo_bits/spop_mean_meat.hpp |only RcppArmadillo-0.12.8.4.0/RcppArmadillo/inst/include/armadillo_bits/spop_min_bones.hpp |only RcppArmadillo-0.12.8.4.0/RcppArmadillo/inst/include/armadillo_bits/spop_min_meat.hpp |only RcppArmadillo-0.12.8.4.0/RcppArmadillo/inst/include/armadillo_bits/spop_sum_bones.hpp |only RcppArmadillo-0.12.8.4.0/RcppArmadillo/inst/include/armadillo_bits/spop_sum_meat.hpp |only RcppArmadillo-0.12.8.4.0/RcppArmadillo/inst/include/armadillo_bits/spop_var_bones.hpp |only RcppArmadillo-0.12.8.4.0/RcppArmadillo/inst/include/armadillo_bits/spop_var_meat.hpp |only RcppArmadillo-0.12.8.4.0/RcppArmadillo/inst/include/armadillo_bits/spop_vecnorm_bones.hpp |only RcppArmadillo-0.12.8.4.0/RcppArmadillo/inst/include/armadillo_bits/spop_vecnorm_meat.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/ChangeLog | 21 RcppArmadillo-14.0.0-1/RcppArmadillo/DESCRIPTION | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/MD5 | 832 +++--- RcppArmadillo-14.0.0-1/RcppArmadillo/README.md | 2 RcppArmadillo-14.0.0-1/RcppArmadillo/build/partial.rdb |binary RcppArmadillo-14.0.0-1/RcppArmadillo/build/vignette.rds |binary RcppArmadillo-14.0.0-1/RcppArmadillo/configure | 18 RcppArmadillo-14.0.0-1/RcppArmadillo/configure.ac | 2 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/NEWS.Rd | 32 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/doc/RcppArmadillo-intro.pdf |binary RcppArmadillo-14.0.0-1/RcppArmadillo/inst/doc/RcppArmadillo-sparseMatrix.pdf |binary RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/RcppArmadillo/interface/RcppArmadilloForward.h | 3 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo | 44 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/BaseCube_meat.hpp | 42 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/Base_meat.hpp | 74 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/Col_meat.hpp | 313 +- RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/CubeToMatOp_meat.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/Cube_bones.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/Cube_meat.hpp | 751 ++--- RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/GenCube_meat.hpp | 24 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/Gen_meat.hpp | 24 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/GlueCube_meat.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/Glue_meat.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/MapMat_meat.hpp | 176 - RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/Mat_bones.hpp | 34 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/Mat_meat.hpp | 1376 +++++----- RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/OpCube_meat.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/Op_meat.hpp | 10 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/Proxy.hpp | 174 - RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/ProxyCube.hpp | 20 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/Row_meat.hpp | 313 +- RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/SizeCube_meat.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/SizeMat_meat.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/SpBase_bones.hpp | 2 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/SpBase_meat.hpp | 98 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/SpCol_bones.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/SpCol_meat.hpp | 80 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/SpGlue_meat.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/SpMat_bones.hpp | 25 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/SpMat_meat.hpp | 897 +++--- RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/SpOp_meat.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/SpProxy.hpp | 151 - RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/SpRow_bones.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/SpRow_meat.hpp | 82 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/SpSubview_bones.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/SpSubview_col_list_meat.hpp | 70 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/SpSubview_meat.hpp | 218 - RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/SpToDGlue_bones.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/SpToDGlue_meat.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/SpToDOp_bones.hpp | 23 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/SpToDOp_meat.hpp | 18 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/arma_config.hpp | 30 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/arma_forward.hpp | 20 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/arma_ostream_meat.hpp | 24 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/arma_rng.hpp | 2 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/arma_version.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/auxlib_meat.hpp | 880 +++--- RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/band_helper.hpp | 14 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/compiler_check.hpp | 7 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/compiler_setup.hpp | 42 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/config.hpp | 72 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/constants.hpp | 18 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/debug.hpp | 180 - RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/diagmat_proxy.hpp | 16 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/diagview_meat.hpp | 92 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/diskio_meat.hpp | 228 - RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/eGlueCube_meat.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/eGlue_meat.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/eOpCube_meat.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/eOp_meat.hpp | 10 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/eglue_core_meat.hpp | 36 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/eop_aux.hpp | 22 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/eop_core_meat.hpp | 44 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fft_engine_fftw3.hpp | 20 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fft_engine_kissfft.hpp | 14 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/field_meat.hpp | 356 +- RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_accu.hpp | 386 ++ RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_all.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_any.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_approx_equal.hpp | 54 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_as_scalar.hpp | 135 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_chi2rnd.hpp | 22 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_chol.hpp | 26 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_clamp.hpp | 16 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_cond_rcond.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_conv.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_conv_to.hpp | 84 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_cor.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_cov.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_cross.hpp | 2 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_cumprod.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_cumsum.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_det.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_diagmat.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_diags_spdiags.hpp | 16 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_diagvec.hpp | 10 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_diff.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_dot.hpp | 26 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_eig_gen.hpp | 38 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_eig_pair.hpp | 22 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_eig_sym.hpp | 22 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_eigs_gen.hpp | 42 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_eigs_sym.hpp | 30 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_elem.hpp | 166 - RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_eps.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_expmat.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_eye.hpp | 20 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_fft.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_fft2.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_find.hpp | 38 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_find_unique.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_flip.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_hess.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_hist.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_histc.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_index_max.hpp | 14 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_index_min.hpp | 14 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_inplace_strans.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_inplace_trans.hpp | 14 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_interp1.hpp | 18 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_interp2.hpp | 32 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_intersect.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_inv.hpp | 16 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_inv_sympd.hpp | 16 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_join.hpp | 58 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_kmeans.hpp | 2 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_kron.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_log_det.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_log_normpdf.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_logmat.hpp | 18 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_lu.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_max.hpp | 34 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_mean.hpp | 24 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_median.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_min.hpp | 34 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_misc.hpp | 64 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_mvnrnd.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_n_unique.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_nonzeros.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_norm.hpp | 18 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_normalise.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_normcdf.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_normpdf.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_numel.hpp | 10 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_ones.hpp | 24 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_orth_null.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_pinv.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_polyfit.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_polyval.hpp | 2 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_powext.hpp | 16 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_powmat.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_princomp.hpp | 18 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_prod.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_qr.hpp | 20 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_quantile.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_qz.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_randg.hpp | 36 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_randi.hpp | 40 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_randn.hpp | 48 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_randperm.hpp | 14 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_randu.hpp | 48 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_range.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_rank.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_regspace.hpp | 24 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_repelem.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_repmat.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_reshape.hpp | 16 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_resize.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_reverse.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_roots.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_schur.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_shift.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_shuffle.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_size.hpp | 46 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_solve.hpp | 24 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_sort.hpp | 16 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_sort_index.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_speye.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_spones.hpp | 2 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_sprandn.hpp | 14 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_sprandu.hpp | 14 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_spsolve.hpp | 22 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_sqrtmat.hpp | 18 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_stddev.hpp | 62 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_strans.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_sum.hpp | 22 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_svd.hpp | 26 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_svds.hpp | 26 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_sylvester.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_symmat.hpp | 16 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_toeplitz.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_trace.hpp | 38 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_trans.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_trapz.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_trig.hpp | 60 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_trimat.hpp | 16 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_trimat_ind.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_trunc_exp.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_trunc_log.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_unique.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_var.hpp | 22 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_vecnorm.hpp | 42 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_vectorise.hpp | 14 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_wishrnd.hpp | 24 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_zeros.hpp | 32 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_affmul_meat.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_atan2_meat.hpp | 16 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_conv_meat.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_cor_meat.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_cov_meat.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_cross_meat.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_hist_meat.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_histc_meat.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_hypot_meat.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_intersect_meat.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_join_meat.hpp | 52 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_kron_meat.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_max_meat.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_min_meat.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_mixed_meat.hpp | 56 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_mvnrnd_meat.hpp | 18 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_polyfit_meat.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_polyval_meat.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_powext_meat.hpp | 32 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_quantile_meat.hpp | 16 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_relational_meat.hpp | 40 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_solve_meat.hpp | 160 - RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_times_meat.hpp | 151 - RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_times_misc_meat.hpp | 52 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_toeplitz_meat.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_trapz_meat.hpp | 18 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/gmm_diag_meat.hpp | 218 - RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/gmm_full_meat.hpp | 206 - RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/gmm_misc_meat.hpp | 10 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/injector_meat.hpp | 32 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/memory.hpp | 2 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/mtGlueCube_meat.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/mtGlue_meat.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/mtOpCube_meat.hpp | 14 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/mtOp_meat.hpp | 14 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/mtSpGlue_meat.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/mtSpOp_bones.hpp | 5 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/mtSpOp_meat.hpp | 19 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/mtSpReduceOp_bones.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/mtSpReduceOp_meat.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/mul_gemm.hpp | 22 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/mul_gemm_mixed.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/mul_gemv.hpp | 18 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/mul_herk.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/mul_syrk.hpp | 10 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/newarp_DenseGenMatProd_meat.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/newarp_DoubleShiftQR_meat.hpp | 32 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/newarp_GenEigsSolver_meat.hpp | 30 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/newarp_SortEigenvalue.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/newarp_SparseGenMatProd_meat.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/newarp_SparseGenRealShiftSolve_meat.hpp | 14 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/newarp_SymEigsShiftSolver_meat.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/newarp_SymEigsSolver_meat.hpp | 30 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/newarp_TridiagEigen_meat.hpp | 20 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/newarp_UpperHessenbergEigen_meat.hpp | 20 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/newarp_UpperHessenbergQR_meat.hpp | 24 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_all_meat.hpp | 20 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_any_meat.hpp | 20 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_chi2rnd_meat.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_chol_meat.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_clamp_meat.hpp | 52 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_col_as_mat_meat.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_cond_meat.hpp | 18 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_cor_meat.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_cov_meat.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_cumprod_meat.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_cumsum_meat.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_cx_scalar_meat.hpp | 24 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_det_meat.hpp | 16 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_diagmat_meat.hpp | 60 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_diagvec_meat.hpp | 42 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_diff_meat.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_dot_bones.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_dot_meat.hpp | 168 - RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_dotext_meat.hpp | 10 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_expmat_meat.hpp | 24 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_fft_meat.hpp | 14 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_find_meat.hpp | 38 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_find_unique_meat.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_flip_meat.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_hist_meat.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_htrans_meat.hpp | 28 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_index_max_meat.hpp | 38 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_index_min_meat.hpp | 38 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_inv_gen_meat.hpp | 50 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_inv_spd_meat.hpp | 58 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_log_det_meat.hpp | 32 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_logmat_meat.hpp | 62 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_max_meat.hpp | 88 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_mean_meat.hpp | 46 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_median_meat.hpp | 34 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_min_meat.hpp | 88 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_misc_meat.hpp | 16 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_nonzeros_bones.hpp | 11 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_nonzeros_meat.hpp | 54 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_norm2est_meat.hpp | 36 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_norm_meat.hpp | 48 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_normalise_meat.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_orth_null_meat.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_pinv_meat.hpp | 20 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_powmat_meat.hpp | 24 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_princomp_meat.hpp | 10 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_prod_meat.hpp | 10 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_range_meat.hpp | 10 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_rank_meat.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_rcond_meat.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_relational_meat.hpp | 40 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_repelem_meat.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_repmat_meat.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_reshape_meat.hpp | 17 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_resize_meat.hpp | 15 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_reverse_meat.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_roots_meat.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_row_as_mat_meat.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_shift_meat.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_shuffle_meat.hpp | 16 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sort_index_meat.hpp | 14 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sort_meat.hpp | 26 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_as_dense_bones.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_as_dense_meat.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_diagvec_bones.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_diagvec_meat.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_max_bones.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_max_meat.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_mean_bones.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_mean_meat.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_min_bones.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_min_meat.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_minus_bones.hpp | 20 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_minus_meat.hpp | 176 - RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_nonzeros_bones.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_nonzeros_meat.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_plus_bones.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_plus_meat.hpp | 89 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_stddev_bones.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_stddev_meat.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_sum_bones.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_sum_meat.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_var_bones.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_var_meat.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_vecnorm_bones.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sp_vecnorm_meat.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sqrtmat_meat.hpp | 54 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_stddev_bones.hpp | 11 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_stddev_meat.hpp | 99 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_strans_meat.hpp | 36 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_sum_meat.hpp | 20 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_symmat_meat.hpp | 16 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_toeplitz_meat.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_trimat_meat.hpp | 28 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_unique_meat.hpp | 10 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_var_meat.hpp | 59 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_vecnorm_meat.hpp | 28 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_vectorise_meat.hpp | 24 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/op_wishrnd_meat.hpp | 32 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/operator_cube_div.hpp | 20 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/operator_cube_minus.hpp | 22 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/operator_cube_plus.hpp | 22 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/operator_cube_relational.hpp | 40 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/operator_cube_schur.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/operator_cube_times.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/operator_div.hpp | 32 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/operator_minus.hpp | 97 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/operator_ostream.hpp | 22 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/operator_plus.hpp | 50 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/operator_relational.hpp | 270 + RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/operator_schur.hpp | 28 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/operator_times.hpp | 44 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/podarray_meat.hpp | 36 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/restrictors.hpp | 15 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/running_stat_meat.hpp | 40 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/running_stat_vec_meat.hpp | 50 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/sp_auxlib_meat.hpp | 266 - RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spdiagview_meat.hpp | 102 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spglue_join_meat.hpp | 34 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spglue_kron_meat.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spglue_max_meat.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spglue_merge_meat.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spglue_min_meat.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spglue_minus_meat.hpp | 18 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spglue_plus_meat.hpp | 14 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spglue_relational_meat.hpp | 24 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spglue_schur_meat.hpp | 18 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spglue_times_meat.hpp | 10 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spop_diagmat_meat.hpp | 26 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spop_htrans_meat.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spop_misc_bones.hpp | 11 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spop_misc_meat.hpp | 106 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spop_norm_meat.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spop_normalise_meat.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spop_relational_bones.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spop_relational_meat.hpp |only RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spop_repmat_meat.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spop_reverse_meat.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spop_shift_meat.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spop_strans_meat.hpp | 6 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spop_symmat_meat.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spop_trimat_meat.hpp | 22 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spop_vectorise_meat.hpp | 10 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/spsolve_factoriser_meat.hpp | 32 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/strip.hpp | 20 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/subview_cube_each_meat.hpp | 86 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/subview_cube_meat.hpp | 198 - RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/subview_cube_slices_meat.hpp | 80 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/subview_each_meat.hpp | 104 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/subview_elem1_meat.hpp | 136 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/subview_elem2_meat.hpp | 122 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/subview_field_meat.hpp | 36 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/subview_meat.hpp | 536 +-- RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/sym_helper.hpp | 16 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/traits.hpp | 27 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/trimat_helper.hpp | 8 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/unwrap.hpp | 499 ++- RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/unwrap_cube.hpp | 14 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/unwrap_spmat.hpp | 42 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/wall_clock_meat.hpp | 12 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/xtrans_mat_meat.hpp | 4 RcppArmadillo-14.0.0-1/RcppArmadillo/inst/include/armadillo_bits/xvec_htrans_meat.hpp | 4 435 files changed, 9892 insertions(+), 8570 deletions(-)
Title: Dynamic Models for Survival Data
Description: Time-varying coefficient models for interval censored and
right censored survival data including
1) Bayesian Cox model with time-independent, time-varying or
dynamic coefficients for right censored and interval censored data studied by
Sinha et al. (1999) <doi:10.1111/j.0006-341X.1999.00585.x> and
Wang et al. (2013) <doi:10.1007/s10985-013-9246-8>,
2) Spline based time-varying coefficient Cox model for right censored data
proposed by Perperoglou et al. (2006) <doi:10.1016/j.cmpb.2005.11.006>, and
3) Transformation model with time-varying coefficients for right censored data
using estimating equations proposed by
Peng and Huang (2007) <doi:10.1093/biomet/asm058>.
Author: Wenjie Wang [aut, cre] ,
Ming-Hui Chen [aut],
Xiaojing Wang [aut],
Jun Yan [aut]
Maintainer: Wenjie Wang <wang@wwenjie.org>
Diff between dynsurv versions 0.4-6 dated 2023-11-28 and 0.4-7 dated 2024-07-08
ChangeLog | 19 +++++++++++----- DESCRIPTION | 8 +++--- MD5 | 54 +++++++++++++++++++++++----------------------- R/bayesCox.R | 2 - R/bayesCoxMcmc.R | 2 - R/coef.R | 2 - R/data.R | 2 - R/dynsurv-package.R | 9 ++++--- R/jump.R | 2 - R/misc.R | 2 - R/plot.R | 2 - R/print.R | 2 - R/reexports.R | 2 - R/splineCox.R | 2 - R/survCurv.R | 2 - R/tvTran.R | 2 - inst/CITATION | 4 +-- man/dynsurv.Rd | 20 +++++++++++++++++ src/CoxModel.h | 2 - src/DynamicCoxModel.h | 2 - src/DynamicCoxModel_v2.h | 2 - src/DynamicModel.h | 2 - src/IntRegModel.h | 2 - src/IntRegPrior.h | 10 ++++---- src/TimeIndepCoxModel.h | 2 - src/TimeIndepModel.h | 2 - src/TimeVaryingCoxModel.h | 2 - src/TimeVaryingModel.h | 2 - 28 files changed, 97 insertions(+), 69 deletions(-)