Title: Variable Selection under Ranked Sparsity Principles for
Interactions and Polynomials
Description: An implementation of ranked sparsity methods, including
penalized regression methods such as the sparsity-ranked lasso, its
non-convex alternatives, and elastic net, as well as the sparsity-ranked
Bayesian Information Criterion. As described in Peterson and
Cavanaugh (2022) <doi:10.1007/s10182-021-00431-7>, ranked
sparsity is a philosophy with methods primarily useful for
variable selection in the presence of prior informational
asymmetry, which occurs in the context of trying to perform variable
selection in the presence of interactions and/or polynomials. Ultimately,
this package attempts to facilitate dealing with cumbersome interactions
and polynomials while not avoiding them entirely. Typically, models
selected under ranked sparsity principles will also be more transparent,
having fewer falsely selected interactions and polynomials than other
methods.
Author: Ryan Andrew Peterson [aut, cre]
Maintainer: Ryan Andrew Peterson <ryan.a.peterson@cuanschutz.edu>
Diff between sparseR versions 0.3.0 dated 2024-06-26 and 0.3.1 dated 2024-07-17
DESCRIPTION | 8 MD5 | 16 NEWS.md | 8 R/sparseR.R | 28 README.md | 21 inst/doc/sparseR.html | 2150 +++++++++++++++++---------------- man/sparseR.Rd | 28 tests/testthat/test_plotting_sparseR.R | 6 tests/testthat/test_sparseR_methods.R | 4 9 files changed, 1209 insertions(+), 1060 deletions(-)
Title: A Shiny App for Network Modeling with 'statnet'
Description: A graphical user interface for cross-sectional network modeling
with the 'statnet' software suite <https://github.com/statnet>.
Author: Martina Morris [cre, aut],
Emily Beylerian [aut],
Kirk Li [ctb],
Samuel Jenness [ctb],
Michal Bojanowski [ctb]
Maintainer: Martina Morris <morrism@uw.edu>
Diff between statnetWeb versions 0.5.6 dated 2020-08-05 and 0.5.8 dated 2024-07-17
statnetWeb-0.5.6/statnetWeb/man/run_sW.Rd |only statnetWeb-0.5.8/statnetWeb/DESCRIPTION | 27 +-- statnetWeb-0.5.8/statnetWeb/MD5 | 22 +- statnetWeb-0.5.8/statnetWeb/NEWS.md | 23 ++ statnetWeb-0.5.8/statnetWeb/R/run_sw.R | 5 statnetWeb-0.5.8/statnetWeb/R/statnetWeb-package.R | 14 + statnetWeb-0.5.8/statnetWeb/README.md | 14 - statnetWeb-0.5.8/statnetWeb/inst/shiny/statnetWeb/global.R | 23 +- statnetWeb-0.5.8/statnetWeb/inst/shiny/statnetWeb/server.R | 27 +-- statnetWeb-0.5.8/statnetWeb/inst/shiny/statnetWeb/ui.R | 86 +++++----- statnetWeb-0.5.8/statnetWeb/inst/shiny/statnetWeb/www/mycosmo.css | 2 statnetWeb-0.5.8/statnetWeb/man/run_sw.Rd |only statnetWeb-0.5.8/statnetWeb/man/statnetWeb.Rd | 52 ++++-- 13 files changed, 180 insertions(+), 115 deletions(-)
Title: Threshold Selection and Uncertainty for Extreme Value Analysis
Description: Provides functions for the selection of thresholds for use in
extreme value models, based mainly on the methodology in
Northrop, Attalides and Jonathan (2017) <doi:10.1111/rssc.12159>.
It also performs predictive inferences about future extreme values,
based either on a single threshold or on a weighted average of inferences
from multiple thresholds, using the 'revdbayes' package
<https://cran.r-project.org/package=revdbayes>.
At the moment only the case where the data can be treated as
independent identically distributed observations is considered.
Author: Paul J. Northrop [aut, cre, cph],
Nicolas Attalides [aut]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>
Diff between threshr versions 1.0.5 dated 2023-12-02 and 1.0.6 dated 2024-07-17
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 6 ++++++ R/ithresh.R | 8 ++++---- build/partial.rdb |binary build/vignette.rds |binary inst/doc/threshr-vignette.html | 32 ++++++++++++++++---------------- man/ithresh.Rd | 8 ++++---- 8 files changed, 41 insertions(+), 35 deletions(-)
Title: Model Visualisation Toolbox for 'easystats' and 'ggplot2'
Description: Provides plotting utilities supporting packages in the 'easystats'
ecosystem (<https://github.com/easystats/easystats>) and some extra themes,
geoms, and scales for 'ggplot2'. Color scales are based on
<https://materialui.co/>.
References: Lüdecke et al. (2021) <doi:10.21105/joss.03393>.
Author: Daniel Luedecke [aut, ctb] ,
Dominique Makowski [aut, inv] ,
Indrajeet Patil [aut, cre] ,
Mattan S. Ben-Shachar [aut, ctb]
,
Brenton M. Wiernik [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Jeffrey R. Stevens [ctb] ,
Matthew Smith [rev] ,
Jakob Bossek [re [...truncated...]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between see versions 0.8.4 dated 2024-04-29 and 0.8.5 dated 2024-07-17
see-0.8.4/see/man/plot.dw_data_tabulate.Rd |only see-0.8.5/see/DESCRIPTION | 36 see-0.8.5/see/MD5 | 38 see-0.8.5/see/NAMESPACE | 4 see-0.8.5/see/NEWS.md | 18 see-0.8.5/see/R/global_vars.R | 34 see-0.8.5/see/R/plot.check_heteroscedasticity.R | 2 see-0.8.5/see/R/plot.check_homogeneity.R | 356 ++-- see-0.8.5/see/R/plot.check_normality.R | 949 ++++++------ see-0.8.5/see/R/plot.dw_data_tabulate.R | 296 +-- see-0.8.5/see/R/plot.n_factors.R | 394 ++-- see-0.8.5/see/R/plots.R | 7 see-0.8.5/see/build/partial.rdb |binary see-0.8.5/see/inst/WORDLIST | 3 see-0.8.5/see/man/plot.datawizard_table.Rd |only see-0.8.5/see/tests/testthat.R | 6 see-0.8.5/see/tests/testthat/test-check_model.R | 126 - see-0.8.5/see/tests/testthat/test-plot.dw_data_tabulate.R | 18 see-0.8.5/see/tests/testthat/test-plot.effectsize_table.R | 18 see-0.8.5/see/tests/testthat/test-plot.estimate_contrasts.R | 2 see-0.8.5/see/tests/testthat/test-plot.n_factors.R | 46 21 files changed, 1132 insertions(+), 1221 deletions(-)
Title: Bayesian Analysis, No Gibbs
Description: Provides functions for the Bayesian analysis of some simple
commonly-used models, without using Markov Chain Monte Carlo (MCMC)
methods such as Gibbs sampling. The 'rust' package
<https://cran.r-project.org/package=rust> is used to simulate a random
sample from the required posterior distribution, using the generalized
ratio-of-uniforms method. See Wakefield, Gelfand and Smith (1991)
<DOI:10.1007/BF01889987> for details. At the moment three conjugate
hierarchical models are available: beta-binomial, gamma-Poisson and a 1-way
analysis of variance (ANOVA).
Author: Paul J. Northrop [aut, cre, cph],
Benjamin D. Hall [aut, cph]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>
Diff between bang versions 1.0.3 dated 2023-12-02 and 1.0.4 dated 2024-07-17
DESCRIPTION | 8 +- MD5 | 24 ++++---- NEWS.md | 6 ++ R/hef.R | 2 R/one_way_anova.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/bang-a-vignette.html | 6 +- inst/doc/bang-b-hef-vignette.html | 14 ++-- inst/doc/bang-c-anova-vignette.html | 108 ++++++++++++++++++------------------ inst/doc/bang-d-ppc-vignette.html | 58 +++++++++---------- man/hanova1.Rd | 2 man/hef.Rd | 2 13 files changed, 119 insertions(+), 113 deletions(-)
Title: Likelihood-Based Inference for Time Series Extremes
Description: Performs likelihood-based inference for stationary time series
extremes. The general approach follows Fawcett and Walshaw (2012)
<doi:10.1002/env.2133>. Marginal extreme value inferences are adjusted for
cluster dependence in the data using the methodology in Chandler and Bate
(2007) <doi:10.1093/biomet/asm015>, producing an adjusted log-likelihood
for the model parameters. A log-likelihood for the extremal index is
produced using the K-gaps model of Suveges and Davison (2010)
<doi:10.1214/09-AOAS292>. These log-likelihoods are combined to make
inferences about extreme values. Both maximum likelihood and Bayesian
approaches are available.
Author: Paul J. Northrop [aut, cre, cph]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>
Diff between lite versions 1.1.0 dated 2023-01-26 and 1.1.1 dated 2024-07-17
lite-1.1.0/lite/R/Bernoulli.R |only lite-1.1.1/lite/DESCRIPTION | 8 lite-1.1.1/lite/MD5 | 82 lite-1.1.1/lite/NAMESPACE | 102 lite-1.1.1/lite/NEWS.md | 6 lite-1.1.1/lite/R/bernoulli.R |only lite-1.1.1/lite/R/blite.R | 9 lite-1.1.1/lite/R/estfun.R | 194 - lite-1.1.1/lite/R/flite.R | 13 lite-1.1.1/lite/R/fliteMethods.R | 7 lite-1.1.1/lite/R/fliteReturnLevel.R | 243 +- lite-1.1.1/lite/R/fliteReturnLevelMethods.R | 414 +-- lite-1.1.1/lite/R/generalisedPareto.R | 410 +-- lite-1.1.1/lite/R/lite-internal.R | 114 + lite-1.1.1/lite/R/logLikVector.R | 238 +- lite-1.1.1/lite/README.md | 2 lite-1.1.1/lite/build/partial.rdb |binary lite-1.1.1/lite/build/vignette.rds |binary lite-1.1.1/lite/inst/doc/lite-1-frequentist.R | 4 lite-1.1.1/lite/inst/doc/lite-1-frequentist.html | 242 +- lite-1.1.1/lite/inst/doc/lite-2-bayesian.R | 4 lite-1.1.1/lite/inst/doc/lite-2-bayesian.Rmd | 148 - lite-1.1.1/lite/inst/doc/lite-2-bayesian.html | 189 - lite-1.1.1/lite/man/Bernoulli.Rd | 182 - lite-1.1.1/lite/man/blite.Rd | 407 +-- lite-1.1.1/lite/man/bliteMethods.Rd | 300 +- lite-1.1.1/lite/man/estfun.Rd | 140 - lite-1.1.1/lite/man/flite.Rd | 439 ++-- lite-1.1.1/lite/man/fliteMethods.Rd | 371 +-- lite-1.1.1/lite/man/generalisedPareto.Rd | 240 +- lite-1.1.1/lite/man/lite-internal.Rd | 77 lite-1.1.1/lite/man/lite-package.Rd | 114 - lite-1.1.1/lite/man/logLikVector.Rd | 162 - lite-1.1.1/lite/man/predict.blite.Rd | 378 +-- lite-1.1.1/lite/man/returnLevel.Rd | 264 +- lite-1.1.1/lite/man/returnLevelMethods.Rd | 190 - lite-1.1.1/lite/tests/testthat.R | 8 lite-1.1.1/lite/tests/testthat/test-estfun.R | 66 lite-1.1.1/lite/tests/testthat/test-logLik-flite.R | 46 lite-1.1.1/lite/tests/testthat/test-logLikVector-flite.R | 52 lite-1.1.1/lite/tests/testthat/test-returnLevel.R | 94 lite-1.1.1/lite/vignettes/lite-2-bayesian.Rmd | 148 - lite-1.1.1/lite/vignettes/taylor-and-francis-chicago-author-date.csl | 1066 +++++----- 43 files changed, 3649 insertions(+), 3524 deletions(-)
Title: Extracts Environmental Data from 'ERDDAP™' Web Services
Description: Contains three functions that access
environmental data from any 'ERDDAP™' data web service. The rxtracto() function extracts
data along a trajectory for a given "radius" around the point. The
rxtracto_3D() function extracts data in a box. The rxtractogon() function
extracts data in a polygon. All of those three function use the 'rerddap' package
to extract the data, and should work with any 'ERDDAP™' server.
There are also two functions, plotBBox() and plotTrack() that use the 'plotdap'
package to simplify the creation of maps of the data.
Author: Roy Mendelssohn [aut, cre],
Marie Auger-Methe [ctb],
Sunny Bak-Hospital [ctb]
Maintainer: Roy Mendelssohn <roy.mendelssohn@noaa.gov>
Diff between rerddapXtracto versions 1.2.0 dated 2024-01-12 and 1.2.1 dated 2024-07-17
DESCRIPTION | 16 ++-- MD5 | 34 +++++----- NEWS.md | 4 + R/getFIleCoords.R | 4 - R/remapCoords.R | 2 R/rerddapXtracto.R | 6 - R/rxtracto.R | 30 +++++--- R/rxtracto_3D.R | 14 ++-- R/rxtractogon.R | 14 ++-- README.md | 4 - build/vignette.rds |binary inst/doc/UsingrerddapXtracto.Rmd | 38 +++++------ inst/doc/UsingrerddapXtracto.html | 129 +++++++++++++++++++------------------- man/rerddapXtracto.Rd | 8 +- man/rxtracto.Rd | 12 +-- man/rxtracto_3D.Rd | 14 ++-- man/rxtractogon.Rd | 14 ++-- vignettes/UsingrerddapXtracto.Rmd | 38 +++++------ 18 files changed, 195 insertions(+), 186 deletions(-)
More information about rerddapXtracto at CRAN
Permanent link
Title: Sparse Linear Algebra
Description: Some basic linear algebra functionality for sparse matrices is
provided: including Cholesky decomposition and backsolving as well as
standard R subsetting and Kronecker products.
Author: Roger Koenker [cre, aut],
Pin Tian Ng [ctb] ,
Yousef Saad [ctb] ,
Ben Shaby [ctb] ,
Martin Maechler [ctb] tweaks; S4,
<https://orcid.org/0000-0002-8685-9910>)
Maintainer: Roger Koenker <rkoenker@uiuc.edu>
Diff between SparseM versions 1.84 dated 2024-06-25 and 1.84-2 dated 2024-07-17
SparseM-1.84-2/SparseM/DESCRIPTION | 6 - SparseM-1.84-2/SparseM/MD5 | 21 ++-- SparseM-1.84-2/SparseM/R/SparseM.R | 7 - SparseM-1.84-2/SparseM/build/vignette.rds |binary SparseM-1.84-2/SparseM/inst/ChangeLog | 10 +- SparseM-1.84-2/SparseM/inst/doc/SparseM.pdf |binary SparseM-1.84-2/SparseM/src/SparseM.h | 8 + SparseM-1.84-2/SparseM/src/cholesky.f | 128 +++++++++++++++++----------- SparseM-1.84-2/SparseM/src/csr.f | 5 - SparseM-1.84-2/SparseM/src/init.c | 4 SparseM-1.84-2/SparseM/src/sparskit.f | 2 SparseM-1.84/SparseM/inst/extdata/lsq.out |only 12 files changed, 115 insertions(+), 76 deletions(-)
Title: Ratio-of-Uniforms Sampling for Bayesian Extreme Value Analysis
Description: Provides functions for the Bayesian analysis of extreme value
models. The 'rust' package <https://cran.r-project.org/package=rust> is
used to simulate a random sample from the required posterior distribution.
The functionality of 'revdbayes' is similar to the 'evdbayes' package
<https://cran.r-project.org/package=evdbayes>, which uses Markov Chain
Monte Carlo ('MCMC') methods for posterior simulation. In addition, there
are functions for making inferences about the extremal index, using
the models for threshold inter-exceedance times of Suveges and Davison
(2010) <doi:10.1214/09-AOAS292> and Holesovsky and Fusek (2020)
<doi:10.1007/s10687-020-00374-3>. Also provided are d,p,q,r functions for
the Generalised Extreme Value ('GEV') and Generalised Pareto ('GP')
distributions that deal appropriately with cases where the shape parameter
is very close to zero.
Author: Paul J. Northrop [aut, cre, cph],
Scott D. Grimshaw [ctb]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>
Diff between revdbayes versions 1.5.3 dated 2023-12-01 and 1.5.4 dated 2024-07-17
DESCRIPTION | 8 +- MD5 | 36 +++++----- NEWS.md | 7 + R/distributions.R | 4 - R/priors.R | 6 - R/revdbayes-package.R | 6 - R/rposterior.R | 2 R/rposterior_rcpp.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/revdbayes-a-vignette.html | 92 +++++++++++++------------- inst/doc/revdbayes-b-using-rcpp-vignette.html | 90 ++++++++++++------------- inst/doc/revdbayes-c-predictive-vignette.html | 78 +++++++++++----------- inst/doc/revdbayes-d-kgaps-vignette.html | 4 - man/gev.Rd | 4 - man/gp_mdi.Rd | 4 - man/revdbayes-package.Rd | 6 - man/rpost.Rd | 2 man/rpost_rcpp.Rd | 2 19 files changed, 180 insertions(+), 173 deletions(-)
Title: Probability Theory for Selecting Candidates in Plant Breeding
Description: Use probability theory under the Bayesian framework for calculating the risk of selecting candidates in a multi-environment context [Dias et al. (2022) <doi:10.1007/s00122-022-04041-y>]. Contained are functions used to fit a Bayesian multi-environment model (based on the available presets), extract posterior values and maximum posterior values, compute the variance components, check the model’s convergence, and calculate the probabilities. For both across and within-environments scopes, the package computes the probability of superior performance and the pairwise probability of superior performance. Furthermore, the probability of superior stability and the pairwise probability of superior stability across environments is estimated. A joint probability of superior performance and stability is also provided.
Author: Saulo Chaves [aut, cre] ,
Kaio Dias [aut, cph] ,
Matheus Krause [aut]
Maintainer: Saulo Chaves <saulo.chaves@ufv.br>
Diff between ProbBreed versions 1.0.3.2 dated 2024-04-05 and 1.0.4.0 dated 2024-07-17
DESCRIPTION | 11 MD5 | 39 NAMESPACE | 4 NEWS.md | 10 R/bayes_met.R | 1237 +------------ R/extr_outs.R | 350 ++- R/prob_sup.R | 2792 ++++++++---------------------- R/soy.R | 6 README.md | 330 ++- build/partial.rdb |binary data/soy.rda |binary man/ProbBreed-package.Rd | 1 man/bayes_met.Rd | 122 - man/extr_outs.Rd | 61 man/figures/README-unnamed-chunk-10-1.png |only man/figures/README-unnamed-chunk-11-1.png |only man/figures/README-unnamed-chunk-12-1.png |only man/figures/README-unnamed-chunk-6-1.png |only man/figures/README-unnamed-chunk-9-1.png |only man/plot.extr.Rd |only man/plot.probsup.Rd |only man/print.extr.Rd |only man/print.probsup.Rd |only man/prob_sup.Rd | 182 - man/soy.Rd | 6 25 files changed, 1593 insertions(+), 3558 deletions(-)
Title: Clinical Trial Registry History
Description: Retrieves historical versions of clinical trial registry
entries from <https://ClinicalTrials.gov>. Package functionality
and implementation for v 1.0.0 is documented in Carlisle (2022)
<DOI:10.1371/journal.pone.0270909>.
Author: Benjamin Gregory Carlisle [aut, cre]
Maintainer: Benjamin Gregory Carlisle <murph@bgcarlisle.com>
Diff between cthist versions 2.1.10 dated 2024-07-09 and 2.1.11 dated 2024-07-17
DESCRIPTION | 12 +- MD5 | 27 ++--- NAMESPACE | 1 NEWS.md | 12 ++ R/clinicaltrials_gov_dates.R | 131 +++++++++++++++++-------- R/clinicaltrials_gov_download.R | 2 R/clinicaltrials_gov_version.R | 4 R/cthist-package.R | 5 R/overall_status_lengths.R |only README.md | 86 ++++++++++++---- man/clinicaltrials_gov_dates.Rd | 13 +- man/clinicaltrials_gov_version.Rd | 2 man/cthist-package.Rd | 5 man/overall_status_lengths.Rd |only tests/testthat/test-clinicaltrials_gov_dates.R | 2 tests/testthat/test-overall_status_lengths.R |only 16 files changed, 210 insertions(+), 92 deletions(-)
Title: Estimate and Manipulate Age-Depth Models
Description: Estimate age-depth models from stratigraphic and sedimentological data,
and transform data
between the time and stratigraphic domain.
Author: Niklas Hohmann [aut, cre]
Maintainer: Niklas Hohmann <N.H.Hohmann@uu.nl>
Diff between admtools versions 0.2.0 dated 2024-03-01 and 0.3.0 dated 2024-07-17
admtools-0.2.0/admtools/data/CarboCatLite_data.rda |only admtools-0.3.0/admtools/DESCRIPTION | 11 - admtools-0.3.0/admtools/MD5 | 126 ++++++----- admtools-0.3.0/admtools/NAMESPACE | 16 + admtools-0.3.0/admtools/NEWS.md | 8 admtools-0.3.0/admtools/R/L_axis_lab.R | 2 admtools-0.3.0/admtools/R/T_axis_lab.R | 2 admtools-0.3.0/admtools/R/adm_summary.R |only admtools-0.3.0/admtools/R/get_total_duration.R | 2 admtools-0.3.0/admtools/R/get_total_thickness.R | 2 admtools-0.3.0/admtools/R/max_heigth.R |only admtools-0.3.0/admtools/R/max_time.R |only admtools-0.3.0/admtools/R/min_height.R |only admtools-0.3.0/admtools/R/min_time.R |only admtools-0.3.0/admtools/R/plot.adm.R | 2 admtools-0.3.0/admtools/R/plot.multiadm.R | 38 ++- admtools-0.3.0/admtools/R/plot.stratlist.R |only admtools-0.3.0/admtools/R/plot.timelist.R |only admtools-0.3.0/admtools/R/sedrate_gen_helpers.R | 11 - admtools-0.3.0/admtools/R/strat_to_time.R | 4 admtools-0.3.0/admtools/R/strat_to_time.list.R | 7 admtools-0.3.0/admtools/R/strat_to_time.numeric.R |only admtools-0.3.0/admtools/R/strat_to_time.phylo.R | 13 + admtools-0.3.0/admtools/R/time_to_strat.R | 4 admtools-0.3.0/admtools/R/time_to_strat.list.R | 5 admtools-0.3.0/admtools/R/time_to_strat.numeric.R |only admtools-0.3.0/admtools/R/time_to_strat.phylo.R | 14 + admtools-0.3.0/admtools/R/timetree.R |only admtools-0.3.0/admtools/R/tp_helpers.R | 27 ++ admtools-0.3.0/admtools/README.md | 23 +- admtools-0.3.0/admtools/data/CarboCATLite_data.rda |only admtools-0.3.0/admtools/data/timetree.rda |only admtools-0.3.0/admtools/inst/doc/adm_from_sedrate.R | 7 admtools-0.3.0/admtools/inst/doc/adm_from_sedrate.Rmd | 17 + admtools-0.3.0/admtools/inst/doc/adm_from_sedrate.html | 109 +++++---- admtools-0.3.0/admtools/inst/doc/adm_from_trace_cont.R | 7 admtools-0.3.0/admtools/inst/doc/adm_from_trace_cont.Rmd | 19 + admtools-0.3.0/admtools/inst/doc/adm_from_trace_cont.html | 154 +++++++------- admtools-0.3.0/admtools/inst/doc/adm_plotting.Rmd | 9 admtools-0.3.0/admtools/inst/doc/adm_plotting.html | 20 + admtools-0.3.0/admtools/inst/doc/admtools.R | 25 +- admtools-0.3.0/admtools/inst/doc/admtools.Rmd | 36 ++- admtools-0.3.0/admtools/inst/doc/admtools.html | 63 +++-- admtools-0.3.0/admtools/inst/doc/admtools_doc.Rmd | 45 +++- admtools-0.3.0/admtools/inst/doc/admtools_doc.html | 70 +++++- admtools-0.3.0/admtools/man/L_axis_lab.Rd | 3 admtools-0.3.0/admtools/man/T_axis_lab.Rd | 3 admtools-0.3.0/admtools/man/get_total_duration.Rd | 3 admtools-0.3.0/admtools/man/get_total_thickness.Rd | 3 admtools-0.3.0/admtools/man/max_height.Rd |only admtools-0.3.0/admtools/man/max_time.Rd |only admtools-0.3.0/admtools/man/mean_adm.Rd |only admtools-0.3.0/admtools/man/median_adm.Rd |only admtools-0.3.0/admtools/man/min_height.Rd |only admtools-0.3.0/admtools/man/min_time.Rd |only admtools-0.3.0/admtools/man/plot.adm.Rd | 3 admtools-0.3.0/admtools/man/plot.multiadm.Rd | 12 + admtools-0.3.0/admtools/man/plot.stratlist.Rd |only admtools-0.3.0/admtools/man/plot.timelist.Rd |only admtools-0.3.0/admtools/man/quantile_adm.Rd |only admtools-0.3.0/admtools/man/sed_rate_from_matrix.Rd | 4 admtools-0.3.0/admtools/man/strat_to_time.Rd | 4 admtools-0.3.0/admtools/man/strat_to_time.list.Rd | 6 admtools-0.3.0/admtools/man/strat_to_time.numeric.Rd |only admtools-0.3.0/admtools/man/strat_to_time.phylo.Rd |only admtools-0.3.0/admtools/man/time_to_strat.Rd | 4 admtools-0.3.0/admtools/man/time_to_strat.list.Rd | 4 admtools-0.3.0/admtools/man/time_to_strat.numeric.Rd |only admtools-0.3.0/admtools/man/time_to_strat.phylo.Rd |only admtools-0.3.0/admtools/man/timetree.Rd |only admtools-0.3.0/admtools/man/tp_height_det.Rd | 4 admtools-0.3.0/admtools/man/tp_time_det.Rd |only admtools-0.3.0/admtools/man/tp_time_floating_scale.Rd | 2 admtools-0.3.0/admtools/vignettes/adm_from_sedrate.Rmd | 17 + admtools-0.3.0/admtools/vignettes/adm_from_trace_cont.Rmd | 19 + admtools-0.3.0/admtools/vignettes/adm_plotting.Rmd | 9 admtools-0.3.0/admtools/vignettes/admtools.Rmd | 36 ++- admtools-0.3.0/admtools/vignettes/admtools_doc.Rmd | 45 +++- 78 files changed, 775 insertions(+), 304 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-18 3.1
2020-05-01 3.0
2016-02-25 2.5
2015-08-31 2.4
2014-11-27 2.3
2014-08-11 2.2
2014-06-03 2.1
2014-01-10 2.0
2013-01-01 1.4
2012-09-18 1.3
2012-08-19 1.2
2012-03-30 1.1
2011-02-04 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-01 3.0
2016-02-25 2.5
2015-08-31 2.4
2014-11-27 2.3
2014-08-11 2.2
2014-06-03 2.1
2014-01-10 2.0
2013-01-01 1.3
2012-09-20 1.2
2012-03-31 1.1
2011-02-05 1.0
Title: Sparse Lightweight Arrays and Matrices
Description: Data structures and algorithms for sparse arrays and matrices,
based on index arrays and simple triplet representations, respectively.
Author: Kurt Hornik [aut, cre] ,
David Meyer [aut],
Christian Buchta [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between slam versions 0.1-50 dated 2022-01-08 and 0.1-51 dated 2024-07-17
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- man/foreign.Rd | 4 ++-- src/grouped.c | 8 ++++---- src/sparse.c | 3 ++- 5 files changed, 15 insertions(+), 14 deletions(-)
Title: Multiple Hypothesis Testing
Description: Seven different methods for multiple testing problems. The SGoF-type methods (see for example, Carvajal Rodríguez et al., 2009 <doi:10.1186/1471-2105-10-209>; de Uña Álvarez, 2012 <doi:10.1515/1544-6115.1812>; Castro Conde et al., 2015 <doi:10.1177/0962280215597580>) and the BH and BY false discovery rate controlling procedures.
Author: Irene Castro Conde and Jacobo de Una Alvarez
Maintainer: Irene Castro Conde <irene.castro@uvigo.es>
Diff between sgof versions 2.3.4 dated 2023-09-05 and 2.3.5 dated 2024-07-17
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- man/Discrete.SGoF.Rd | 6 ++---- man/sgof-package.Rd | 3 +-- 4 files changed, 11 insertions(+), 14 deletions(-)
Title: Seamless R and C++ Integration
Description: The 'Rcpp' package provides R functions as well as C++ classes which
offer a seamless integration of R and C++. Many R data types and objects can be
mapped back and forth to C++ equivalents which facilitates both writing of new
code as well as easier integration of third-party libraries. Documentation
about 'Rcpp' is provided by several vignettes included in this package, via the
'Rcpp Gallery' site at <https://gallery.rcpp.org>, the paper by Eddelbuettel and
Francois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013,
<doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2018,
<doi:10.1080/00031305.2017.1375990>); see 'citation("Rcpp")' for details.
Author: Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey, Qiang Kou,
Nathan Russell, Inaki Ucar, Douglas Bates and John Chambers
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between Rcpp versions 1.0.12 dated 2024-01-09 and 1.0.13 dated 2024-07-17
ChangeLog | 104 +++++++++ DESCRIPTION | 8 MD5 | 105 ++++----- R/Attributes.R | 2 README.md | 21 - build/partial.rdb |binary build/vignette.rds |binary cleanup | 4 inst/NEWS.Rd | 27 ++ inst/bib/Rcpp.bib | 2 inst/doc/Rcpp-FAQ.pdf |binary inst/doc/Rcpp-attributes.pdf |binary inst/doc/Rcpp-extending.pdf |binary inst/doc/Rcpp-introduction.pdf |binary inst/doc/Rcpp-jss-2011.pdf |binary inst/doc/Rcpp-libraries.pdf |binary inst/doc/Rcpp-modules.pdf |binary inst/doc/Rcpp-package.pdf |binary inst/doc/Rcpp-quickref.pdf |binary inst/doc/Rcpp-sugar.pdf |binary inst/include/Rcpp/DataFrame.h | 12 - inst/include/Rcpp/DottedPair.h | 10 inst/include/Rcpp/Function.h | 9 inst/include/Rcpp/InternalFunction.h | 7 inst/include/Rcpp/InternalFunctionWithStdFunction.h | 25 -- inst/include/Rcpp/Language.h | 14 + inst/include/Rcpp/Module.h | 226 ++++++++++++++++++-- inst/include/Rcpp/Pairlist.h | 11 inst/include/Rcpp/Vector.h | 3 inst/include/Rcpp/config.h | 8 inst/include/Rcpp/grow.h | 13 + inst/include/Rcpp/internal/Proxy_Iterator.h | 7 inst/include/Rcpp/internal/SEXP_Iterator.h | 2 inst/include/Rcpp/internal/call.h |only inst/include/Rcpp/internal/export.h | 4 inst/include/Rcpp/internal/r_vector.h | 15 + inst/include/Rcpp/module/class.h | 149 ++++++++----- inst/include/Rcpp/r/compat.h |only inst/include/Rcpp/r/headers.h | 10 inst/include/Rcpp/traits/index_sequence.h |only inst/include/Rcpp/traits/named_object.h | 15 + inst/include/Rcpp/vector/SubMatrix.h | 17 - inst/include/Rcpp/vector/Subsetter.h | 13 - inst/include/Rcpp/vector/Vector.h | 54 ++++ inst/include/Rcpp/vector/traits.h | 47 +++- inst/include/RcppCommon.h | 1 inst/tinytest/cpp/InternalFunction.cpp | 9 inst/tinytest/cpp/Vector.cpp | 10 inst/tinytest/testRcppClass/src/init.c | 10 inst/tinytest/test_packageversion.R | 4 inst/tinytest/test_rcpp_package_skeleton.R | 2 inst/tinytest/test_vector.R | 8 src/api.cpp | 2 src/barrier.cpp | 14 - tests/tinytest.R | 2 55 files changed, 774 insertions(+), 232 deletions(-)
Title: The Symmetric Group: Permutations of a Finite Set
Description: Manipulates invertible functions from a finite set to
itself. Can transform from word form to cycle form and
back. To cite the package in publications please use
Hankin (2020) "Introducing the permutations R package",
SoftwareX, volume 11 <doi:10.1016/j.softx.2020.100453>.
Author: Robin K. S. Hankin [aut, cre] ,
Paul Egeler [ctb]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between permutations versions 1.1-2 dated 2023-02-21 and 1.1-5 dated 2024-07-17
permutations-1.1-2/permutations/build/permutations.pdf |only permutations-1.1-5/permutations/DESCRIPTION | 12 permutations-1.1-5/permutations/MD5 | 125 permutations-1.1-5/permutations/NAMESPACE | 3 permutations-1.1-5/permutations/NEWS.md | 10 permutations-1.1-5/permutations/R/all_perms_given_shape.R |only permutations-1.1-5/permutations/R/allcyc.R | 108 permutations-1.1-5/permutations/R/faro.R | 19 permutations-1.1-5/permutations/R/megaminx_plotting.R | 1158 ++++++-- permutations-1.1-5/permutations/R/perm_ops.R | 371 +- permutations-1.1-5/permutations/R/permfuns.R | 1334 +++++----- permutations-1.1-5/permutations/R/validity_funs.R | 56 permutations-1.1-5/permutations/R/zzz_dodecahedron.R | 680 ++--- permutations-1.1-5/permutations/R/zzz_id.R | 2 permutations-1.1-5/permutations/README.md | 14 permutations-1.1-5/permutations/build/partial.rdb |binary permutations-1.1-5/permutations/build/vignette.rds |binary permutations-1.1-5/permutations/data/dot.rda |binary permutations-1.1-5/permutations/data/megaminx.rda |binary permutations-1.1-5/permutations/inst/Matrix_multiplication_associative.svg |only permutations-1.1-5/permutations/inst/allpermutationsofagivenshape.R |only permutations-1.1-5/permutations/inst/doc/cyclist.R | 25 permutations-1.1-5/permutations/inst/doc/cyclist.Rmd | 53 permutations-1.1-5/permutations/inst/doc/cyclist.html | 602 +++- permutations-1.1-5/permutations/inst/doc/order_of_ops.R | 87 permutations-1.1-5/permutations/inst/doc/order_of_ops.Rmd | 109 permutations-1.1-5/permutations/inst/doc/order_of_ops.html | 782 ++++- permutations-1.1-5/permutations/inst/doc/permutations.R | 54 permutations-1.1-5/permutations/inst/doc/permutations.Rnw | 53 permutations-1.1-5/permutations/inst/doc/permutations.pdf |binary permutations-1.1-5/permutations/inst/doc/print.R | 46 permutations-1.1-5/permutations/inst/doc/print.Rmd | 92 permutations-1.1-5/permutations/inst/doc/print.html | 840 ++++-- permutations-1.1-5/permutations/inst/doc/representation.R | 18 permutations-1.1-5/permutations/inst/doc/representation.Rmd | 48 permutations-1.1-5/permutations/inst/doc/representation.html | 597 ++-- permutations-1.1-5/permutations/inst/given_shape.Rmd |only permutations-1.1-5/permutations/inst/inversion.svg |only permutations-1.1-5/permutations/inst/permutations_active_to_passive.svg |only permutations-1.1-5/permutations/inst/permutations_composition_active.svg |only permutations-1.1-5/permutations/inst/shape_preserved_by_conjugation.svg |only permutations-1.1-5/permutations/man/Ops.permutation.Rd | 83 permutations-1.1-5/permutations/man/allperms.Rd | 69 permutations-1.1-5/permutations/man/capply.Rd | 9 permutations-1.1-5/permutations/man/cayley.Rd | 2 permutations-1.1-5/permutations/man/commutator.Rd | 13 permutations-1.1-5/permutations/man/conjugate.Rd | 22 permutations-1.1-5/permutations/man/cyclist.Rd | 13 permutations-1.1-5/permutations/man/faro.Rd | 4 permutations-1.1-5/permutations/man/fbin.Rd | 11 permutations-1.1-5/permutations/man/orbit.Rd | 65 permutations-1.1-5/permutations/man/outer.Rd |only permutations-1.1-5/permutations/man/permutation.Rd | 29 permutations-1.1-5/permutations/man/print.Rd | 30 permutations-1.1-5/permutations/man/rperm.Rd | 30 permutations-1.1-5/permutations/man/sgn.Rd | 30 permutations-1.1-5/permutations/man/shape.Rd | 39 permutations-1.1-5/permutations/man/size.Rd | 9 permutations-1.1-5/permutations/tests/testthat/test_aaa.R | 241 - permutations-1.1-5/permutations/tests/testthat/test_aab.R | 6 permutations-1.1-5/permutations/tests/testthat/test_aac.R | 83 permutations-1.1-5/permutations/tests/testthat/test_aad.R | 28 permutations-1.1-5/permutations/tests/testthat/test_aae.R |only permutations-1.1-5/permutations/vignettes/cyclist.Rmd | 53 permutations-1.1-5/permutations/vignettes/order_of_ops.Rmd | 109 permutations-1.1-5/permutations/vignettes/permutations.Rnw | 53 permutations-1.1-5/permutations/vignettes/permutations.bib | 3 permutations-1.1-5/permutations/vignettes/print.Rmd | 92 permutations-1.1-5/permutations/vignettes/representation.Rmd | 48 69 files changed, 5210 insertions(+), 3262 deletions(-)
Title: Informative Hypothesis Testing Web Applications
Description: Offering enhanced statistical power compared to traditional
hypothesis testing methods, informative hypothesis testing allows researchers
to explicitly model their expectations regarding the relationships among
parameters. An important software tool for this framework is 'restriktor'.
The 'mmirestriktor' package provides 'shiny' web applications to implement
some of the basic functionality of 'restriktor'. The mmirestriktor() function
launches a 'shiny' application for fitting and analyzing models with
constraints. The FbarCards() function launches a card game application which
can help build intuition about informative hypothesis testing. The
iht_interpreter() helps interpret informative hypothesis testing results based
on guidelines in Vanbrabant and Rosseel (2020) <doi:10.4324/9780429273872-14>.
Author: Mackson Ncube [aut, cre],
mightymetrika, LLC [cph, fnd]
Maintainer: Mackson Ncube <macksonncube.stats@gmail.com>
Diff between mmirestriktor versions 0.3.0 dated 2024-06-23 and 0.3.1 dated 2024-07-17
DESCRIPTION | 6 MD5 | 9 R/app.R | 538 ++++++++++++++++++++++++---------------------- R/replext_helpers_pgsql.R | 37 +++ R/replext_pgsql.R | 40 +++ man/format_citation.Rd |only 6 files changed, 370 insertions(+), 260 deletions(-)
Title: Many Ways to Make, Modify, Mark, and Map Myriad Networks
Description: Many tools for making, modifying, mapping, marking, measuring,
and motifs and memberships of many different types of networks.
All functions operate with matrices, edge lists, and 'igraph', 'network', and 'tidygraph' objects,
and on one-mode, two-mode (bipartite), and sometimes three-mode networks.
The package includes functions for importing and exporting, creating and generating networks,
modifying networks and node and tie attributes,
and describing and visualizing networks with sensible defaults.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between manynet versions 0.4.4 dated 2024-03-15 and 1.0.1 dated 2024-07-17
manynet-0.4.4/manynet/R/class_diff_model.R |only manynet-0.4.4/manynet/R/map_attributes.R |only manynet-0.4.4/manynet/R/map_autographr.R |only manynet-0.4.4/manynet/R/map_properties.R |only manynet-0.4.4/manynet/R/pkg_tutorials.R |only manynet-0.4.4/manynet/man/attributes.Rd |only manynet-0.4.4/manynet/man/autographr.Rd |only manynet-0.4.4/manynet/man/autographs.Rd |only manynet-0.4.4/manynet/man/autographt.Rd |only manynet-0.4.4/manynet/man/properties.Rd |only manynet-0.4.4/manynet/tests/testthat/sheets/nassau.graphml |only manynet-1.0.1/manynet/DESCRIPTION | 22 manynet-1.0.1/manynet/MD5 | 260 manynet-1.0.1/manynet/NAMESPACE | 288 + manynet-1.0.1/manynet/NEWS.md | 141 manynet-1.0.1/manynet/R/class_marks.R | 2 manynet-1.0.1/manynet/R/class_measures.R |only manynet-1.0.1/manynet/R/class_members.R |only manynet-1.0.1/manynet/R/class_models.R |only manynet-1.0.1/manynet/R/class_motifs.R |only manynet-1.0.1/manynet/R/data_ison.R | 50 manynet-1.0.1/manynet/R/make_create.R | 18 manynet-1.0.1/manynet/R/make_generate.R | 52 manynet-1.0.1/manynet/R/make_play.R | 103 manynet-1.0.1/manynet/R/make_read.R | 1 manynet-1.0.1/manynet/R/manip_as.R | 141 manynet-1.0.1/manynet/R/manip_correlation.R |only manynet-1.0.1/manynet/R/manip_reformat.R | 35 manynet-1.0.1/manynet/R/manip_reformed.R | 16 manynet-1.0.1/manynet/R/manip_split.R | 6 manynet-1.0.1/manynet/R/manip_ties.R | 14 manynet-1.0.1/manynet/R/manynet-defunct.R |only manynet-1.0.1/manynet/R/manynet-tutorials.R |only manynet-1.0.1/manynet/R/manynet-utils.R | 14 manynet-1.0.1/manynet/R/map_autograph.R |only manynet-1.0.1/manynet/R/map_layout_configurations.R | 4 manynet-1.0.1/manynet/R/map_layout_partition.R | 40 manynet-1.0.1/manynet/R/map_plot.R | 6 manynet-1.0.1/manynet/R/map_theme.R | 6 manynet-1.0.1/manynet/R/mark_is.R | 66 manynet-1.0.1/manynet/R/mark_nodes.R | 152 manynet-1.0.1/manynet/R/mark_ties.R | 12 manynet-1.0.1/manynet/R/measure_attributes.R |only manynet-1.0.1/manynet/R/measure_centrality.R |only manynet-1.0.1/manynet/R/measure_closure.R |only manynet-1.0.1/manynet/R/measure_cohesion.R |only manynet-1.0.1/manynet/R/measure_diffusion.R |only manynet-1.0.1/manynet/R/measure_features.R |only manynet-1.0.1/manynet/R/measure_heterogeneity.R |only manynet-1.0.1/manynet/R/measure_hierarchy.R |only manynet-1.0.1/manynet/R/measure_holes.R |only manynet-1.0.1/manynet/R/measure_over.R |only manynet-1.0.1/manynet/R/measure_properties.R |only manynet-1.0.1/manynet/R/member_cliques.R |only manynet-1.0.1/manynet/R/member_community.R |only manynet-1.0.1/manynet/R/member_components.R |only manynet-1.0.1/manynet/R/member_core.R |only manynet-1.0.1/manynet/R/member_equivalence.R |only manynet-1.0.1/manynet/R/model_cluster.R |only manynet-1.0.1/manynet/R/model_k.R |only manynet-1.0.1/manynet/R/motif_census.R |only manynet-1.0.1/manynet/R/reexports_classes.R | 12 manynet-1.0.1/manynet/R/reexports_ggplot2.R | 5 manynet-1.0.1/manynet/R/sysdata.rda |binary manynet-1.0.1/manynet/README.md | 186 manynet-1.0.1/manynet/build/partial.rdb |binary manynet-1.0.1/manynet/data/ison_friends.rda |binary manynet-1.0.1/manynet/data/ison_greys.rda |only manynet-1.0.1/manynet/data/ison_southern_women.rda |binary manynet-1.0.1/manynet/data/ison_usstates.rda |binary manynet-1.0.1/manynet/inst/manynet.png |binary manynet-1.0.1/manynet/inst/manynet_logo.png |only manynet-1.0.1/manynet/inst/tutorials/tutorial0/tutorial0.Rmd | 3 manynet-1.0.1/manynet/inst/tutorials/tutorial1/data.Rmd | 5 manynet-1.0.1/manynet/inst/tutorials/tutorial2/visualisation.Rmd | 42 manynet-1.0.1/manynet/inst/tutorials/tutorial2/visualisation.html | 108 manynet-1.0.1/manynet/inst/tutorials/tutorial2/visualisation_files/figure-html/maxbet-1.png |binary manynet-1.0.1/manynet/inst/tutorials/tutorial3 |only manynet-1.0.1/manynet/inst/tutorials/tutorial4 |only manynet-1.0.1/manynet/inst/tutorials/tutorial5 |only manynet-1.0.1/manynet/inst/tutorials/tutorial6 |only manynet-1.0.1/manynet/inst/tutorials/tutorial7/diffusion.Rmd | 861 ++- manynet-1.0.1/manynet/inst/tutorials/tutorial7/diffusion.html | 2754 ++++++---- manynet-1.0.1/manynet/man/add_nodes.Rd | 1 manynet-1.0.1/manynet/man/add_ties.Rd | 4 manynet-1.0.1/manynet/man/as.Rd | 37 manynet-1.0.1/manynet/man/between_centrality.Rd |only manynet-1.0.1/manynet/man/close_centrality.Rd |only manynet-1.0.1/manynet/man/cluster.Rd |only manynet-1.0.1/manynet/man/configuration_layouts.Rd | 10 manynet-1.0.1/manynet/man/correlation.Rd |only manynet-1.0.1/manynet/man/create.Rd | 5 manynet-1.0.1/manynet/man/data_overview.Rd |only manynet-1.0.1/manynet/man/defunct.Rd |only manynet-1.0.1/manynet/man/degree_centrality.Rd |only manynet-1.0.1/manynet/man/eigenv_centrality.Rd |only manynet-1.0.1/manynet/man/figures/logo.png |binary manynet-1.0.1/manynet/man/figures/logo_old.png |only manynet-1.0.1/manynet/man/from.Rd | 1 manynet-1.0.1/manynet/man/generate.Rd | 21 manynet-1.0.1/manynet/man/graphr.Rd |only manynet-1.0.1/manynet/man/graphs.Rd |only manynet-1.0.1/manynet/man/grapht.Rd |only manynet-1.0.1/manynet/man/is_format.Rd | 6 manynet-1.0.1/manynet/man/ison_friends.Rd | 22 manynet-1.0.1/manynet/man/ison_greys.Rd |only manynet-1.0.1/manynet/man/ison_marvel.Rd | 2 manynet-1.0.1/manynet/man/ison_monastery.Rd | 2 manynet-1.0.1/manynet/man/ison_southern_women.Rd | 50 manynet-1.0.1/manynet/man/ison_usstates.Rd | 18 manynet-1.0.1/manynet/man/kselect.Rd |only manynet-1.0.1/manynet/man/learning.Rd | 6 manynet-1.0.1/manynet/man/mark_core.Rd |only manynet-1.0.1/manynet/man/mark_nodes.Rd | 20 manynet-1.0.1/manynet/man/mark_tie_select.Rd | 8 manynet-1.0.1/manynet/man/measure_attributes.Rd |only manynet-1.0.1/manynet/man/measure_closure.Rd |only manynet-1.0.1/manynet/man/measure_cohesion.Rd |only manynet-1.0.1/manynet/man/measure_features.Rd |only manynet-1.0.1/manynet/man/measure_heterogeneity.Rd |only manynet-1.0.1/manynet/man/measure_hierarchy.Rd |only manynet-1.0.1/manynet/man/measure_holes.Rd |only manynet-1.0.1/manynet/man/measure_infection.Rd |only manynet-1.0.1/manynet/man/measure_net_diffusion.Rd |only manynet-1.0.1/manynet/man/measure_node_diffusion.Rd |only manynet-1.0.1/manynet/man/measure_periods.Rd |only manynet-1.0.1/manynet/man/measure_properties.Rd |only manynet-1.0.1/manynet/man/member_cliques.Rd |only manynet-1.0.1/manynet/man/member_community_hier.Rd |only manynet-1.0.1/manynet/man/member_community_non.Rd |only manynet-1.0.1/manynet/man/member_components.Rd |only manynet-1.0.1/manynet/man/member_diffusion.Rd |only manynet-1.0.1/manynet/man/member_equivalence.Rd |only manynet-1.0.1/manynet/man/miss.Rd | 1 manynet-1.0.1/manynet/man/motif_brokerage.Rd |only manynet-1.0.1/manynet/man/motif_diffusion.Rd |only manynet-1.0.1/manynet/man/motif_net.Rd |only manynet-1.0.1/manynet/man/motif_node.Rd |only manynet-1.0.1/manynet/man/over.Rd |only manynet-1.0.1/manynet/man/partition_layouts.Rd | 20 manynet-1.0.1/manynet/man/play.Rd | 26 manynet-1.0.1/manynet/man/read.Rd | 1 manynet-1.0.1/manynet/man/reexports.Rd | 3 manynet-1.0.1/manynet/man/reformat.Rd | 3 manynet-1.0.1/manynet/man/scales.Rd | 4 manynet-1.0.1/manynet/man/split.Rd | 1 manynet-1.0.1/manynet/man/themes.Rd | 2 manynet-1.0.1/manynet/man/to_levels.Rd | 1 manynet-1.0.1/manynet/man/to_paths.Rd | 7 manynet-1.0.1/manynet/man/to_project.Rd | 7 manynet-1.0.1/manynet/man/to_scope.Rd | 1 manynet-1.0.1/manynet/man/tutorials.Rd | 14 manynet-1.0.1/manynet/tests/testthat/helper-manynet.R | 26 manynet-1.0.1/manynet/tests/testthat/test-make_read.R | 32 manynet-1.0.1/manynet/tests/testthat/test-manip_add.R | 8 manynet-1.0.1/manynet/tests/testthat/test-manip_as.R | 10 manynet-1.0.1/manynet/tests/testthat/test-manip_correlation.R |only manynet-1.0.1/manynet/tests/testthat/test-manip_grab.R | 36 manynet-1.0.1/manynet/tests/testthat/test-manip_reformat.R | 2 manynet-1.0.1/manynet/tests/testthat/test-manip_split.R | 15 manynet-1.0.1/manynet/tests/testthat/test-manip_transform.R | 22 manynet-1.0.1/manynet/tests/testthat/test-map_autographr.R | 82 manynet-1.0.1/manynet/tests/testthat/test-map_theme.R | 26 manynet-1.0.1/manynet/tests/testthat/test-mark_nodes.R | 67 manynet-1.0.1/manynet/tests/testthat/test-mark_ties.R | 24 manynet-1.0.1/manynet/tests/testthat/test-measure_centrality.R |only manynet-1.0.1/manynet/tests/testthat/test-measure_closure.R |only manynet-1.0.1/manynet/tests/testthat/test-measure_cohesion.R |only manynet-1.0.1/manynet/tests/testthat/test-measure_features.R |only manynet-1.0.1/manynet/tests/testthat/test-measure_heterogeneity.R |only manynet-1.0.1/manynet/tests/testthat/test-measure_holes.R |only manynet-1.0.1/manynet/tests/testthat/test-member_community.R |only manynet-1.0.1/manynet/tests/testthat/test-member_equivalence.R |only manynet-1.0.1/manynet/tests/testthat/test-motif_census.R |only 174 files changed, 4126 insertions(+), 1953 deletions(-)
Title: An R Interface for Downloading, Reading, and Handling IPUMS Data
Description: An easy way to work with census, survey, and geographic data
provided by IPUMS in R. Generate and download data through the IPUMS
API and load IPUMS files into R with their associated metadata to
make analysis easier. IPUMS data describing 1.4 billion individuals
drawn from over 750 censuses and surveys is available free of charge
from the IPUMS website <https://www.ipums.org>.
Author: Greg Freedman Ellis [aut],
Derek Burk [aut, cre],
Finn Roberts [aut],
Joe Grover [ctb],
Dan Ehrlich [ctb],
Renae Rodgers [ctb],
Institute for Social Research and Data Innovation [cph]
Maintainer: Derek Burk <ipums+cran@umn.edu>
Diff between ipumsr versions 0.8.0 dated 2024-07-10 and 0.8.1 dated 2024-07-17
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 7 +++++++ inst/doc/ipums-api-nhgis.R | 6 ------ inst/doc/ipums-api-nhgis.Rmd | 2 +- vignettes/ipums-api-nhgis.Rmd | 2 +- 6 files changed, 17 insertions(+), 16 deletions(-)
Title: Compositional Data Analysis for Microbiome Studies
Description: Functions for microbiome data analysis that take into account its compositional nature. Performs variable selection through penalized regression for both, cross-sectional and longitudinal studies, and for binary and continuous outcomes.
Author: Malu Calle [aut] ,
Toni Susin [aut, cre] ,
Meritxell Pujolassos [aut]
Maintainer: Toni Susin <toni.susin@upc.edu>
Diff between coda4microbiome versions 0.2.3 dated 2024-02-21 and 0.2.4 dated 2024-07-17
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/coda4microbiome_functions.R | 1 + 3 files changed, 6 insertions(+), 5 deletions(-)
More information about coda4microbiome at CRAN
Permanent link
Title: Signal and Image Processing Toolbox for Analyzing Intracranial
Electroencephalography Data
Description: Implemented fast and memory-efficient Notch-filter,
Welch-periodogram, discrete wavelet spectrogram for minutes of
high-resolution signals, fast 3D convolution, image registration,
3D mesh manipulation; providing fundamental toolbox for intracranial
Electroencephalography (iEEG) pipelines.
Documentation and examples about 'RAVE' project are provided at
<https://openwetware.org/wiki/RAVE>, and the paper by John F. Magnotti,
Zhengjia Wang, Michael S. Beauchamp (2020)
<doi:10.1016/j.neuroimage.2020.117341>; see 'citation("ravetools")' for
details.
Author: Zhengjia Wang [aut, cre],
John Magnotti [aut],
Michael Beauchamp [aut],
Trustees of the University of Pennsylvania [cph] ,
Karim Rahim [cph, ctb] ,
Thomas Possidente [cph, ctb] ,
Michael Prerau [cph, ctb] ,
Marcus Geelnard [ctb, cph] ,
Stefan Schlage [...truncated...]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between ravetools versions 0.1.6 dated 2024-06-02 and 0.1.7 dated 2024-07-17
ravetools-0.1.6/ravetools/R/fftfilt.R |only ravetools-0.1.6/ravetools/R/filtfilt.R |only ravetools-0.1.6/ravetools/R/fir1.R |only ravetools-0.1.6/ravetools/R/notch.R |only ravetools-0.1.6/ravetools/R/window.R |only ravetools-0.1.7/ravetools/DESCRIPTION | 12 ravetools-0.1.7/ravetools/MD5 | 75 + ravetools-0.1.7/ravetools/NAMESPACE | 48 + ravetools-0.1.7/ravetools/NEWS.md | 13 ravetools-0.1.7/ravetools/R/RcppExports.R | 4 ravetools-0.1.7/ravetools/R/aaa.R | 12 ravetools-0.1.7/ravetools/R/band-pass.R | 8 ravetools-0.1.7/ravetools/R/convolve.R | 8 ravetools-0.1.7/ravetools/R/dijkstras-path.R |only ravetools-0.1.7/ravetools/R/filter-butter.R |only ravetools-0.1.7/ravetools/R/filter-cutoff.R |only ravetools-0.1.7/ravetools/R/filter-decimate.R |only ravetools-0.1.7/ravetools/R/filter-diagnosis.R |only ravetools-0.1.7/ravetools/R/filter-filtfilt.R |only ravetools-0.1.7/ravetools/R/filter-fir-design.R |only ravetools-0.1.7/ravetools/R/filter-fir.R |only ravetools-0.1.7/ravetools/R/filter-notch.R |only ravetools-0.1.7/ravetools/R/filter-utils.R |only ravetools-0.1.7/ravetools/R/filter.R | 448 ++++++++-- ravetools-0.1.7/ravetools/R/guess_number.R |only ravetools-0.1.7/ravetools/R/pwelch.R | 4 ravetools-0.1.7/ravetools/R/reexports.R |only ravetools-0.1.7/ravetools/R/vcg.R | 4 ravetools-0.1.7/ravetools/inst/WORDLIST | 5 ravetools-0.1.7/ravetools/man/butter_max_order.Rd |only ravetools-0.1.7/ravetools/man/check_filter.Rd |only ravetools-0.1.7/ravetools/man/convolve.Rd | 5 ravetools-0.1.7/ravetools/man/decimate.Rd | 11 ravetools-0.1.7/ravetools/man/design_filter.Rd |only ravetools-0.1.7/ravetools/man/design_filter_fir.Rd |only ravetools-0.1.7/ravetools/man/design_filter_iir.Rd |only ravetools-0.1.7/ravetools/man/diagnose_filter.Rd |only ravetools-0.1.7/ravetools/man/dijkstras-path.Rd |only ravetools-0.1.7/ravetools/man/filter_signal.Rd | 7 ravetools-0.1.7/ravetools/man/filtfilt.Rd | 4 ravetools-0.1.7/ravetools/man/fir1.Rd |only ravetools-0.1.7/ravetools/man/firls.Rd |only ravetools-0.1.7/ravetools/man/freqz2.Rd |only ravetools-0.1.7/ravetools/man/grow_volume.Rd | 3 ravetools-0.1.7/ravetools/man/notch_filter.Rd | 2 ravetools-0.1.7/ravetools/man/pwelch.Rd | 8 ravetools-0.1.7/ravetools/man/rcond_filter_ar.Rd |only ravetools-0.1.7/ravetools/man/reexports.Rd |only ravetools-0.1.7/ravetools/src/RcppExports.cpp | 15 ravetools-0.1.7/ravetools/src/filter.cpp | 2 ravetools-0.1.7/ravetools/src/vcgCommon.cpp | 93 ++ ravetools-0.1.7/ravetools/src/vcglib/vcg/complex/algorithms/update/selection.h | 52 - ravetools-0.1.7/ravetools/tests/testthat/test-filter.R | 2 53 files changed, 701 insertions(+), 144 deletions(-)
Title: Put Page Numbers on Graphics
Description: A simple way to add page numbers to base/ggplot/lattice graphics.
Author: Kevin Wright [aut, cre, cph]
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between pagenum versions 1.2 dated 2021-04-17 and 1.3 dated 2024-07-17
pagenum-1.2/pagenum/R/pagenum.R |only pagenum-1.3/pagenum/DESCRIPTION | 26 - pagenum-1.3/pagenum/LICENSE |only pagenum-1.3/pagenum/MD5 | 13 pagenum-1.3/pagenum/NEWS.md | 20 - pagenum-1.3/pagenum/R/pagenum.r |only pagenum-1.3/pagenum/build/vignette.rds |binary pagenum-1.3/pagenum/inst/doc/pagenum_examples.html | 388 ++++++++++++++++----- pagenum-1.3/pagenum/man/pagenum.Rd | 2 9 files changed, 337 insertions(+), 112 deletions(-)
Title: R Interface to 'Keras'
Description: Interface to 'Keras' <https://keras.io>, a high-level neural
networks API. 'Keras' was developed with a focus on enabling fast experimentation,
supports both convolution based networks and recurrent networks (as well as
combinations of the two), and runs seamlessly on both CPU and GPU devices.
Author: Tomasz Kalinowski [aut, cph, cre],
Daniel Falbel [ctb, cph],
JJ Allaire [aut, cph],
Francois Chollet [aut, cph],
Posit Software, PBC [cph, fnd],
Google [cph, fnd],
Yuan Tang [ctb, cph] ,
Wouter Van Der Bijl [ctb, cph],
Martin Studer [ctb, cph],
Sigri [...truncated...]
Maintainer: Tomasz Kalinowski <tomasz@posit.co>
Diff between keras3 versions 1.0.0 dated 2024-05-21 and 1.1.0 dated 2024-07-17
keras3-1.0.0/keras3/man/application_nasnetlarge.Rd |only keras3-1.0.0/keras3/man/application_nasnetmobile.Rd |only keras3-1.1.0/keras3/DESCRIPTION | 18 keras3-1.1.0/keras3/MD5 | 745 +++++----- keras3-1.1.0/keras3/NAMESPACE | 12 keras3-1.1.0/keras3/NEWS.md | 57 keras3-1.1.0/keras3/R/Layer.R | 8 keras3-1.1.0/keras3/R/applications.R | 347 +++- keras3-1.1.0/keras3/R/install.R | 184 +- keras3-1.1.0/keras3/R/layers-attention.R | 5 keras3-1.1.0/keras3/R/layers-backend-wrappers.R | 3 keras3-1.1.0/keras3/R/layers-core.R | 2 keras3-1.1.0/keras3/R/layers-normalization.R | 2 keras3-1.1.0/keras3/R/layers-reshaping.R | 6 keras3-1.1.0/keras3/R/losses.R | 209 ++ keras3-1.1.0/keras3/R/metrics.R | 14 keras3-1.1.0/keras3/R/model-creation.R | 16 keras3-1.1.0/keras3/R/model-persistence.R | 15 keras3-1.1.0/keras3/R/ops-image.R | 263 ++- keras3-1.1.0/keras3/R/ops-linalg.R | 53 keras3-1.1.0/keras3/R/ops-numpy.R | 37 keras3-1.1.0/keras3/R/ops.R | 249 +++ keras3-1.1.0/keras3/R/package.R | 2 keras3-1.1.0/keras3/R/r-utils.R | 32 keras3-1.1.0/keras3/R/shape.R | 19 keras3-1.1.0/keras3/R/zzz-metrics-callback.R | 2 keras3-1.1.0/keras3/build/vignette.rds |binary keras3-1.1.0/keras3/inst/doc/custom_train_step_in_tensorflow.Rmd | 10 keras3-1.1.0/keras3/inst/doc/custom_train_step_in_tensorflow.html | 10 keras3-1.1.0/keras3/inst/doc/distributed_training_with_tensorflow.Rmd | 13 keras3-1.1.0/keras3/inst/doc/distributed_training_with_tensorflow.html | 12 keras3-1.1.0/keras3/inst/doc/distribution.Rmd | 11 keras3-1.1.0/keras3/inst/doc/distribution.html | 51 keras3-1.1.0/keras3/inst/doc/functional_api.Rmd | 20 keras3-1.1.0/keras3/inst/doc/functional_api.html | 20 keras3-1.1.0/keras3/inst/doc/getting_started.Rmd | 8 keras3-1.1.0/keras3/inst/doc/getting_started.html | 10 keras3-1.1.0/keras3/inst/doc/intro_to_keras_for_engineers.Rmd | 41 keras3-1.1.0/keras3/inst/doc/intro_to_keras_for_engineers.html | 366 ++-- keras3-1.1.0/keras3/inst/doc/intro_to_keras_for_researchers.Rmd | 4 keras3-1.1.0/keras3/inst/doc/intro_to_keras_for_researchers.html | 4 keras3-1.1.0/keras3/inst/doc/making_new_layers_and_models_via_subclassing.Rmd | 8 keras3-1.1.0/keras3/inst/doc/making_new_layers_and_models_via_subclassing.html | 8 keras3-1.1.0/keras3/inst/doc/serialization_and_saving.Rmd | 28 keras3-1.1.0/keras3/inst/doc/serialization_and_saving.html | 28 keras3-1.1.0/keras3/inst/doc/training_with_built_in_methods.Rmd | 76 - keras3-1.1.0/keras3/inst/doc/training_with_built_in_methods.html | 76 - keras3-1.1.0/keras3/inst/doc/transfer_learning.Rmd | 14 keras3-1.1.0/keras3/inst/doc/transfer_learning.html | 14 keras3-1.1.0/keras3/inst/doc/writing_a_custom_training_loop_in_tensorflow.Rmd | 4 keras3-1.1.0/keras3/inst/doc/writing_a_custom_training_loop_in_tensorflow.html | 4 keras3-1.1.0/keras3/inst/doc/writing_your_own_callbacks.Rmd | 4 keras3-1.1.0/keras3/inst/doc/writing_your_own_callbacks.html | 4 keras3-1.1.0/keras3/man/Layer.Rd | 6 keras3-1.1.0/keras3/man/application_convnext_base.Rd | 10 keras3-1.1.0/keras3/man/application_convnext_large.Rd | 10 keras3-1.1.0/keras3/man/application_convnext_small.Rd | 10 keras3-1.1.0/keras3/man/application_convnext_tiny.Rd | 10 keras3-1.1.0/keras3/man/application_convnext_xlarge.Rd | 10 keras3-1.1.0/keras3/man/application_densenet121.Rd | 7 keras3-1.1.0/keras3/man/application_densenet169.Rd | 7 keras3-1.1.0/keras3/man/application_densenet201.Rd | 7 keras3-1.1.0/keras3/man/application_efficientnet_b0.Rd | 5 keras3-1.1.0/keras3/man/application_efficientnet_b1.Rd | 5 keras3-1.1.0/keras3/man/application_efficientnet_b2.Rd | 5 keras3-1.1.0/keras3/man/application_efficientnet_b3.Rd | 5 keras3-1.1.0/keras3/man/application_efficientnet_b4.Rd | 5 keras3-1.1.0/keras3/man/application_efficientnet_b5.Rd | 5 keras3-1.1.0/keras3/man/application_efficientnet_b6.Rd | 5 keras3-1.1.0/keras3/man/application_efficientnet_b7.Rd | 5 keras3-1.1.0/keras3/man/application_efficientnet_v2b0.Rd | 7 keras3-1.1.0/keras3/man/application_efficientnet_v2b1.Rd | 7 keras3-1.1.0/keras3/man/application_efficientnet_v2b2.Rd | 7 keras3-1.1.0/keras3/man/application_efficientnet_v2b3.Rd | 7 keras3-1.1.0/keras3/man/application_efficientnet_v2l.Rd | 7 keras3-1.1.0/keras3/man/application_efficientnet_v2m.Rd | 7 keras3-1.1.0/keras3/man/application_efficientnet_v2s.Rd | 7 keras3-1.1.0/keras3/man/application_inception_resnet_v2.Rd | 7 keras3-1.1.0/keras3/man/application_inception_v3.Rd | 7 keras3-1.1.0/keras3/man/application_mobilenet.Rd | 7 keras3-1.1.0/keras3/man/application_mobilenet_v2.Rd | 7 keras3-1.1.0/keras3/man/application_mobilenet_v3_large.Rd | 7 keras3-1.1.0/keras3/man/application_mobilenet_v3_small.Rd | 7 keras3-1.1.0/keras3/man/application_nasnet_large.Rd |only keras3-1.1.0/keras3/man/application_nasnet_mobile.Rd |only keras3-1.1.0/keras3/man/application_resnet101.Rd | 7 keras3-1.1.0/keras3/man/application_resnet101_v2.Rd | 7 keras3-1.1.0/keras3/man/application_resnet152.Rd | 7 keras3-1.1.0/keras3/man/application_resnet152_v2.Rd | 7 keras3-1.1.0/keras3/man/application_resnet50.Rd | 7 keras3-1.1.0/keras3/man/application_resnet50_v2.Rd | 7 keras3-1.1.0/keras3/man/application_vgg16.Rd | 9 keras3-1.1.0/keras3/man/application_vgg19.Rd | 7 keras3-1.1.0/keras3/man/application_xception.Rd | 7 keras3-1.1.0/keras3/man/back-compat.Rd |only keras3-1.1.0/keras3/man/clone_model.Rd | 2 keras3-1.1.0/keras3/man/deserialize_keras_object.Rd | 6 keras3-1.1.0/keras3/man/export_savedmodel.keras.src.models.model.Model.Rd | 2 keras3-1.1.0/keras3/man/image_array_save.Rd | 2 keras3-1.1.0/keras3/man/image_from_array.Rd | 2 keras3-1.1.0/keras3/man/image_load.Rd | 2 keras3-1.1.0/keras3/man/image_smart_resize.Rd | 2 keras3-1.1.0/keras3/man/image_to_array.Rd | 2 keras3-1.1.0/keras3/man/keras3-package.Rd | 14 keras3-1.1.0/keras3/man/keras_input.Rd | 6 keras3-1.1.0/keras3/man/keras_model_sequential.Rd | 4 keras3-1.1.0/keras3/man/layer_input.Rd | 6 keras3-1.1.0/keras3/man/layer_masking.Rd | 2 keras3-1.1.0/keras3/man/layer_multi_head_attention.Rd | 3 keras3-1.1.0/keras3/man/layer_permute.Rd | 2 keras3-1.1.0/keras3/man/layer_tfsm.Rd | 4 keras3-1.1.0/keras3/man/layer_torch_module_wrapper.Rd | 3 keras3-1.1.0/keras3/man/layer_unit_normalization.Rd | 2 keras3-1.1.0/keras3/man/loss_binary_crossentropy.Rd | 8 keras3-1.1.0/keras3/man/loss_binary_focal_crossentropy.Rd | 8 keras3-1.1.0/keras3/man/loss_categorical_crossentropy.Rd | 8 keras3-1.1.0/keras3/man/loss_categorical_focal_crossentropy.Rd | 8 keras3-1.1.0/keras3/man/loss_categorical_hinge.Rd | 8 keras3-1.1.0/keras3/man/loss_cosine_similarity.Rd | 8 keras3-1.1.0/keras3/man/loss_ctc.Rd | 16 keras3-1.1.0/keras3/man/loss_dice.Rd | 42 keras3-1.1.0/keras3/man/loss_hinge.Rd | 8 keras3-1.1.0/keras3/man/loss_huber.Rd | 8 keras3-1.1.0/keras3/man/loss_kl_divergence.Rd | 8 keras3-1.1.0/keras3/man/loss_log_cosh.Rd | 8 keras3-1.1.0/keras3/man/loss_mean_absolute_error.Rd | 8 keras3-1.1.0/keras3/man/loss_mean_absolute_percentage_error.Rd | 8 keras3-1.1.0/keras3/man/loss_mean_squared_error.Rd | 8 keras3-1.1.0/keras3/man/loss_mean_squared_logarithmic_error.Rd | 8 keras3-1.1.0/keras3/man/loss_poisson.Rd | 8 keras3-1.1.0/keras3/man/loss_sparse_categorical_crossentropy.Rd | 8 keras3-1.1.0/keras3/man/loss_squared_hinge.Rd | 8 keras3-1.1.0/keras3/man/loss_tversky.Rd | 16 keras3-1.1.0/keras3/man/metric_sparse_categorical_crossentropy.Rd | 16 keras3-1.1.0/keras3/man/op_abs.Rd | 10 keras3-1.1.0/keras3/man/op_add.Rd | 10 keras3-1.1.0/keras3/man/op_all.Rd | 10 keras3-1.1.0/keras3/man/op_any.Rd | 10 keras3-1.1.0/keras3/man/op_append.Rd | 10 keras3-1.1.0/keras3/man/op_arange.Rd | 10 keras3-1.1.0/keras3/man/op_arccos.Rd | 10 keras3-1.1.0/keras3/man/op_arccosh.Rd | 10 keras3-1.1.0/keras3/man/op_arcsin.Rd | 10 keras3-1.1.0/keras3/man/op_arcsinh.Rd | 10 keras3-1.1.0/keras3/man/op_arctan.Rd | 10 keras3-1.1.0/keras3/man/op_arctan2.Rd | 10 keras3-1.1.0/keras3/man/op_arctanh.Rd | 10 keras3-1.1.0/keras3/man/op_argmax.Rd | 10 keras3-1.1.0/keras3/man/op_argmin.Rd | 10 keras3-1.1.0/keras3/man/op_argpartition.Rd |only keras3-1.1.0/keras3/man/op_argsort.Rd | 10 keras3-1.1.0/keras3/man/op_array.Rd | 10 keras3-1.1.0/keras3/man/op_average.Rd | 10 keras3-1.1.0/keras3/man/op_average_pool.Rd | 8 keras3-1.1.0/keras3/man/op_batch_normalization.Rd | 8 keras3-1.1.0/keras3/man/op_binary_crossentropy.Rd | 8 keras3-1.1.0/keras3/man/op_bincount.Rd | 10 keras3-1.1.0/keras3/man/op_broadcast_to.Rd | 10 keras3-1.1.0/keras3/man/op_cast.Rd | 12 keras3-1.1.0/keras3/man/op_categorical_crossentropy.Rd | 8 keras3-1.1.0/keras3/man/op_ceil.Rd | 10 keras3-1.1.0/keras3/man/op_cholesky.Rd | 9 keras3-1.1.0/keras3/man/op_clip.Rd | 10 keras3-1.1.0/keras3/man/op_concatenate.Rd | 10 keras3-1.1.0/keras3/man/op_cond.Rd | 12 keras3-1.1.0/keras3/man/op_conj.Rd | 10 keras3-1.1.0/keras3/man/op_conv.Rd | 8 keras3-1.1.0/keras3/man/op_conv_transpose.Rd | 8 keras3-1.1.0/keras3/man/op_convert_to_numpy.Rd | 12 keras3-1.1.0/keras3/man/op_convert_to_tensor.Rd | 12 keras3-1.1.0/keras3/man/op_copy.Rd | 10 keras3-1.1.0/keras3/man/op_correlate.Rd | 10 keras3-1.1.0/keras3/man/op_cos.Rd | 10 keras3-1.1.0/keras3/man/op_cosh.Rd | 10 keras3-1.1.0/keras3/man/op_count_nonzero.Rd | 10 keras3-1.1.0/keras3/man/op_cross.Rd | 10 keras3-1.1.0/keras3/man/op_ctc_decode.Rd | 16 keras3-1.1.0/keras3/man/op_ctc_loss.Rd | 8 keras3-1.1.0/keras3/man/op_cumprod.Rd | 10 keras3-1.1.0/keras3/man/op_cumsum.Rd | 10 keras3-1.1.0/keras3/man/op_custom_gradient.Rd | 12 keras3-1.1.0/keras3/man/op_depthwise_conv.Rd | 8 keras3-1.1.0/keras3/man/op_det.Rd | 9 keras3-1.1.0/keras3/man/op_diag.Rd | 10 keras3-1.1.0/keras3/man/op_diagonal.Rd | 10 keras3-1.1.0/keras3/man/op_diff.Rd | 10 keras3-1.1.0/keras3/man/op_digitize.Rd | 10 keras3-1.1.0/keras3/man/op_divide.Rd | 10 keras3-1.1.0/keras3/man/op_divide_no_nan.Rd | 10 keras3-1.1.0/keras3/man/op_dot.Rd | 10 keras3-1.1.0/keras3/man/op_dtype.Rd |only keras3-1.1.0/keras3/man/op_eig.Rd | 9 keras3-1.1.0/keras3/man/op_eigh.Rd | 9 keras3-1.1.0/keras3/man/op_einsum.Rd | 10 keras3-1.1.0/keras3/man/op_elu.Rd | 8 keras3-1.1.0/keras3/man/op_empty.Rd | 10 keras3-1.1.0/keras3/man/op_equal.Rd | 10 keras3-1.1.0/keras3/man/op_erf.Rd | 8 keras3-1.1.0/keras3/man/op_erfinv.Rd | 8 keras3-1.1.0/keras3/man/op_exp.Rd | 10 keras3-1.1.0/keras3/man/op_expand_dims.Rd | 10 keras3-1.1.0/keras3/man/op_expm1.Rd | 10 keras3-1.1.0/keras3/man/op_extract_sequences.Rd | 8 keras3-1.1.0/keras3/man/op_eye.Rd | 10 keras3-1.1.0/keras3/man/op_fft.Rd | 8 keras3-1.1.0/keras3/man/op_fft2.Rd | 8 keras3-1.1.0/keras3/man/op_flip.Rd | 10 keras3-1.1.0/keras3/man/op_floor.Rd | 10 keras3-1.1.0/keras3/man/op_floor_divide.Rd | 10 keras3-1.1.0/keras3/man/op_fori_loop.Rd | 12 keras3-1.1.0/keras3/man/op_full.Rd | 10 keras3-1.1.0/keras3/man/op_full_like.Rd | 10 keras3-1.1.0/keras3/man/op_gelu.Rd | 8 keras3-1.1.0/keras3/man/op_get_item.Rd | 10 keras3-1.1.0/keras3/man/op_greater.Rd | 10 keras3-1.1.0/keras3/man/op_greater_equal.Rd | 10 keras3-1.1.0/keras3/man/op_hard_sigmoid.Rd | 8 keras3-1.1.0/keras3/man/op_hard_silu.Rd | 8 keras3-1.1.0/keras3/man/op_hstack.Rd | 10 keras3-1.1.0/keras3/man/op_identity.Rd | 10 keras3-1.1.0/keras3/man/op_imag.Rd | 10 keras3-1.1.0/keras3/man/op_image_affine_transform.Rd | 34 keras3-1.1.0/keras3/man/op_image_crop.Rd | 39 keras3-1.1.0/keras3/man/op_image_extract_patches.Rd | 31 keras3-1.1.0/keras3/man/op_image_hsv_to_rgb.Rd |only keras3-1.1.0/keras3/man/op_image_map_coordinates.Rd | 38 keras3-1.1.0/keras3/man/op_image_pad.Rd | 41 keras3-1.1.0/keras3/man/op_image_resize.Rd | 33 keras3-1.1.0/keras3/man/op_image_rgb_to_grayscale.Rd | 21 keras3-1.1.0/keras3/man/op_image_rgb_to_hsv.Rd |only keras3-1.1.0/keras3/man/op_in_top_k.Rd | 8 keras3-1.1.0/keras3/man/op_inv.Rd | 9 keras3-1.1.0/keras3/man/op_irfft.Rd | 8 keras3-1.1.0/keras3/man/op_is_tensor.Rd | 12 keras3-1.1.0/keras3/man/op_isclose.Rd | 18 keras3-1.1.0/keras3/man/op_isfinite.Rd | 10 keras3-1.1.0/keras3/man/op_isinf.Rd | 10 keras3-1.1.0/keras3/man/op_isnan.Rd | 10 keras3-1.1.0/keras3/man/op_istft.Rd | 8 keras3-1.1.0/keras3/man/op_leaky_relu.Rd | 8 keras3-1.1.0/keras3/man/op_less.Rd | 10 keras3-1.1.0/keras3/man/op_less_equal.Rd | 10 keras3-1.1.0/keras3/man/op_linspace.Rd | 10 keras3-1.1.0/keras3/man/op_log.Rd | 10 keras3-1.1.0/keras3/man/op_log10.Rd | 10 keras3-1.1.0/keras3/man/op_log1p.Rd | 10 keras3-1.1.0/keras3/man/op_log2.Rd | 10 keras3-1.1.0/keras3/man/op_log_sigmoid.Rd | 8 keras3-1.1.0/keras3/man/op_log_softmax.Rd | 8 keras3-1.1.0/keras3/man/op_logaddexp.Rd | 10 keras3-1.1.0/keras3/man/op_logical_and.Rd | 10 keras3-1.1.0/keras3/man/op_logical_not.Rd | 10 keras3-1.1.0/keras3/man/op_logical_or.Rd | 10 keras3-1.1.0/keras3/man/op_logical_xor.Rd | 10 keras3-1.1.0/keras3/man/op_logspace.Rd | 10 keras3-1.1.0/keras3/man/op_logsumexp.Rd | 8 keras3-1.1.0/keras3/man/op_lstsq.Rd |only keras3-1.1.0/keras3/man/op_lu_factor.Rd | 9 keras3-1.1.0/keras3/man/op_map.Rd |only keras3-1.1.0/keras3/man/op_matmul.Rd | 10 keras3-1.1.0/keras3/man/op_max.Rd | 10 keras3-1.1.0/keras3/man/op_max_pool.Rd | 8 keras3-1.1.0/keras3/man/op_maximum.Rd | 10 keras3-1.1.0/keras3/man/op_mean.Rd | 10 keras3-1.1.0/keras3/man/op_median.Rd | 10 keras3-1.1.0/keras3/man/op_meshgrid.Rd | 10 keras3-1.1.0/keras3/man/op_min.Rd | 10 keras3-1.1.0/keras3/man/op_minimum.Rd | 10 keras3-1.1.0/keras3/man/op_mod.Rd | 10 keras3-1.1.0/keras3/man/op_moments.Rd | 8 keras3-1.1.0/keras3/man/op_moveaxis.Rd | 10 keras3-1.1.0/keras3/man/op_multi_hot.Rd | 8 keras3-1.1.0/keras3/man/op_multiply.Rd | 10 keras3-1.1.0/keras3/man/op_nan_to_num.Rd | 10 keras3-1.1.0/keras3/man/op_ndim.Rd | 10 keras3-1.1.0/keras3/man/op_negative.Rd | 10 keras3-1.1.0/keras3/man/op_nonzero.Rd | 10 keras3-1.1.0/keras3/man/op_norm.Rd | 9 keras3-1.1.0/keras3/man/op_normalize.Rd | 8 keras3-1.1.0/keras3/man/op_not_equal.Rd | 10 keras3-1.1.0/keras3/man/op_one_hot.Rd | 8 keras3-1.1.0/keras3/man/op_ones.Rd | 10 keras3-1.1.0/keras3/man/op_ones_like.Rd | 10 keras3-1.1.0/keras3/man/op_outer.Rd | 10 keras3-1.1.0/keras3/man/op_pad.Rd | 10 keras3-1.1.0/keras3/man/op_power.Rd | 10 keras3-1.1.0/keras3/man/op_prod.Rd | 10 keras3-1.1.0/keras3/man/op_psnr.Rd | 8 keras3-1.1.0/keras3/man/op_qr.Rd | 8 keras3-1.1.0/keras3/man/op_quantile.Rd | 10 keras3-1.1.0/keras3/man/op_ravel.Rd | 10 keras3-1.1.0/keras3/man/op_real.Rd | 10 keras3-1.1.0/keras3/man/op_reciprocal.Rd | 10 keras3-1.1.0/keras3/man/op_relu.Rd | 8 keras3-1.1.0/keras3/man/op_relu6.Rd | 8 keras3-1.1.0/keras3/man/op_repeat.Rd | 10 keras3-1.1.0/keras3/man/op_reshape.Rd | 10 keras3-1.1.0/keras3/man/op_rfft.Rd | 8 keras3-1.1.0/keras3/man/op_roll.Rd | 10 keras3-1.1.0/keras3/man/op_round.Rd | 10 keras3-1.1.0/keras3/man/op_rsqrt.Rd | 8 keras3-1.1.0/keras3/man/op_scan.Rd |only keras3-1.1.0/keras3/man/op_scatter.Rd | 12 keras3-1.1.0/keras3/man/op_scatter_update.Rd | 12 keras3-1.1.0/keras3/man/op_segment_max.Rd | 8 keras3-1.1.0/keras3/man/op_segment_sum.Rd | 8 keras3-1.1.0/keras3/man/op_select.Rd | 10 keras3-1.1.0/keras3/man/op_selu.Rd | 8 keras3-1.1.0/keras3/man/op_separable_conv.Rd | 8 keras3-1.1.0/keras3/man/op_shape.Rd | 12 keras3-1.1.0/keras3/man/op_sigmoid.Rd | 8 keras3-1.1.0/keras3/man/op_sign.Rd | 10 keras3-1.1.0/keras3/man/op_silu.Rd | 8 keras3-1.1.0/keras3/man/op_sin.Rd | 10 keras3-1.1.0/keras3/man/op_sinh.Rd | 10 keras3-1.1.0/keras3/man/op_size.Rd | 10 keras3-1.1.0/keras3/man/op_slice.Rd | 12 keras3-1.1.0/keras3/man/op_slice_update.Rd | 12 keras3-1.1.0/keras3/man/op_slogdet.Rd | 9 keras3-1.1.0/keras3/man/op_softmax.Rd | 8 keras3-1.1.0/keras3/man/op_softplus.Rd | 8 keras3-1.1.0/keras3/man/op_softsign.Rd | 8 keras3-1.1.0/keras3/man/op_solve.Rd | 8 keras3-1.1.0/keras3/man/op_solve_triangular.Rd | 9 keras3-1.1.0/keras3/man/op_sort.Rd | 10 keras3-1.1.0/keras3/man/op_sparse_categorical_crossentropy.Rd | 8 keras3-1.1.0/keras3/man/op_split.Rd | 10 keras3-1.1.0/keras3/man/op_sqrt.Rd | 10 keras3-1.1.0/keras3/man/op_square.Rd | 10 keras3-1.1.0/keras3/man/op_squeeze.Rd | 10 keras3-1.1.0/keras3/man/op_stack.Rd | 10 keras3-1.1.0/keras3/man/op_std.Rd | 10 keras3-1.1.0/keras3/man/op_stft.Rd | 8 keras3-1.1.0/keras3/man/op_stop_gradient.Rd | 12 keras3-1.1.0/keras3/man/op_subtract.Rd | 10 keras3-1.1.0/keras3/man/op_sum.Rd | 10 keras3-1.1.0/keras3/man/op_svd.Rd | 9 keras3-1.1.0/keras3/man/op_swapaxes.Rd | 10 keras3-1.1.0/keras3/man/op_switch.Rd |only keras3-1.1.0/keras3/man/op_take.Rd | 10 keras3-1.1.0/keras3/man/op_take_along_axis.Rd | 10 keras3-1.1.0/keras3/man/op_tan.Rd | 10 keras3-1.1.0/keras3/man/op_tanh.Rd | 10 keras3-1.1.0/keras3/man/op_tensordot.Rd | 10 keras3-1.1.0/keras3/man/op_tile.Rd | 10 keras3-1.1.0/keras3/man/op_top_k.Rd | 8 keras3-1.1.0/keras3/man/op_trace.Rd | 10 keras3-1.1.0/keras3/man/op_transpose.Rd | 10 keras3-1.1.0/keras3/man/op_tri.Rd | 10 keras3-1.1.0/keras3/man/op_tril.Rd | 10 keras3-1.1.0/keras3/man/op_triu.Rd | 10 keras3-1.1.0/keras3/man/op_unstack.Rd | 12 keras3-1.1.0/keras3/man/op_var.Rd | 10 keras3-1.1.0/keras3/man/op_vdot.Rd | 10 keras3-1.1.0/keras3/man/op_vectorize.Rd | 10 keras3-1.1.0/keras3/man/op_vectorized_map.Rd | 12 keras3-1.1.0/keras3/man/op_vstack.Rd | 10 keras3-1.1.0/keras3/man/op_where.Rd | 10 keras3-1.1.0/keras3/man/op_while_loop.Rd | 12 keras3-1.1.0/keras3/man/op_zeros.Rd | 10 keras3-1.1.0/keras3/man/op_zeros_like.Rd | 10 keras3-1.1.0/keras3/man/save_model.Rd | 7 keras3-1.1.0/keras3/man/shape.Rd | 8 keras3-1.1.0/keras3/tests/testthat/test-custom-layers.R | 2 keras3-1.1.0/keras3/tests/testthat/test-model-persistence.R | 11 keras3-1.1.0/keras3/tests/testthat/test-rnn-api.R | 6 keras3-1.1.0/keras3/vignettes/custom_train_step_in_tensorflow.Rmd | 10 keras3-1.1.0/keras3/vignettes/distributed_training_with_tensorflow.Rmd | 13 keras3-1.1.0/keras3/vignettes/distribution.Rmd | 11 keras3-1.1.0/keras3/vignettes/functional_api.Rmd | 20 keras3-1.1.0/keras3/vignettes/getting_started.Rmd | 8 keras3-1.1.0/keras3/vignettes/getting_started/unnamed-chunk-12-1.png |binary keras3-1.1.0/keras3/vignettes/intro_to_keras_for_engineers.Rmd | 41 keras3-1.1.0/keras3/vignettes/intro_to_keras_for_researchers.Rmd | 4 keras3-1.1.0/keras3/vignettes/making_new_layers_and_models_via_subclassing.Rmd | 8 keras3-1.1.0/keras3/vignettes/serialization_and_saving.Rmd | 28 keras3-1.1.0/keras3/vignettes/training_with_built_in_methods.Rmd | 76 - keras3-1.1.0/keras3/vignettes/transfer_learning.Rmd | 14 keras3-1.1.0/keras3/vignettes/writing_a_custom_training_loop_in_tensorflow.Rmd | 4 keras3-1.1.0/keras3/vignettes/writing_your_own_callbacks.Rmd | 4 380 files changed, 4914 insertions(+), 1371 deletions(-)
Title: Simple Key-Value Database using SQLite
Description: Simple key-value database using SQLite as the backend.
Author: Roger D. Peng <roger.peng@austin.utexas.edu>
Maintainer: Roger D. Peng <roger.peng@austin.utexas.edu>
Diff between filehashSQLite versions 0.2-6 dated 2022-05-11 and 0.2-7 dated 2024-07-17
filehashSQLite-0.2-6/filehashSQLite/man/dbDelete-filehashSQLite-character-method.Rd |only filehashSQLite-0.2-6/filehashSQLite/man/dbDisconnect-filehashSQLite-method.Rd |only filehashSQLite-0.2-6/filehashSQLite/man/dbExists-filehashSQLite-character-method.Rd |only filehashSQLite-0.2-6/filehashSQLite/man/dbFetch-filehashSQLite-character-method.Rd |only filehashSQLite-0.2-6/filehashSQLite/man/dbInsert-filehashSQLite-character-method.Rd |only filehashSQLite-0.2-6/filehashSQLite/man/dbList-filehashSQLite-method.Rd |only filehashSQLite-0.2-6/filehashSQLite/man/dbMultiFetch-filehashSQLite-character-method.Rd |only filehashSQLite-0.2-6/filehashSQLite/man/dbUnlink-filehashSQLite-method.Rd |only filehashSQLite-0.2-6/filehashSQLite/man/filehashSQLite.Rd |only filehashSQLite-0.2-6/filehashSQLite/man/sub-filehashSQLite-character-ANY-ANY-method.Rd |only filehashSQLite-0.2-6/filehashSQLite/tests/testthat |only filehashSQLite-0.2-6/filehashSQLite/tests/testthat.R |only filehashSQLite-0.2-7/filehashSQLite/DESCRIPTION | 22 - filehashSQLite-0.2-7/filehashSQLite/MD5 | 23 - filehashSQLite-0.2-7/filehashSQLite/NAMESPACE | 69 ++--- filehashSQLite-0.2-7/filehashSQLite/R/filehash-SQLite.R | 135 ---------- filehashSQLite-0.2-7/filehashSQLite/R/zzz.R | 1 filehashSQLite-0.2-7/filehashSQLite/man/filehashSQLite-class.Rd |only filehashSQLite-0.2-7/filehashSQLite/tests/reg-tests.R |only filehashSQLite-0.2-7/filehashSQLite/tests/reg-tests.Rout.save |only 20 files changed, 63 insertions(+), 187 deletions(-)
More information about filehashSQLite at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-25 0.2.0
2018-10-28 0.0.1
Title: 'Shiny' App Usage Telemetry
Description: Enables instrumentation of 'Shiny' apps for tracking user
session events such as input changes, browser type, and session
duration. These events can be sent to any of the available storage
backends and analyzed using the included 'Shiny' app to gain insights
about app usage and adoption.
Author: Andre Verissimo [aut, cre],
Kamil Zyla [aut],
Krystian Igras [aut],
Recle Vibal [aut],
Arun Kodati [aut],
Wahaduzzaman Khan [aut],
Appsilon Sp. z o.o. [cph]
Maintainer: Andre Verissimo <opensource+andre@appsilon.com>
Diff between shiny.telemetry versions 0.2.0 dated 2023-11-16 and 0.3.0 dated 2024-07-17
shiny.telemetry-0.2.0/shiny.telemetry/inst/examples/app/REAME.html |only shiny.telemetry-0.2.0/shiny.telemetry/inst/examples/app/REAME.md |only shiny.telemetry-0.2.0/shiny.telemetry/inst/examples/app/analytics/user_stats.txt |only shiny.telemetry-0.2.0/shiny.telemetry/tests/testthat/user_stats.txt |only shiny.telemetry-0.3.0/shiny.telemetry/DESCRIPTION | 27 shiny.telemetry-0.3.0/shiny.telemetry/MD5 | 131 ++- shiny.telemetry-0.3.0/shiny.telemetry/NAMESPACE | 2 shiny.telemetry-0.3.0/shiny.telemetry/NEWS.md | 23 shiny.telemetry-0.3.0/shiny.telemetry/R/analytics-app.R | 7 shiny.telemetry-0.3.0/shiny.telemetry/R/auxiliary.R | 131 ++- shiny.telemetry-0.3.0/shiny.telemetry/R/data-storage-log-file.R | 8 shiny.telemetry-0.3.0/shiny.telemetry/R/data-storage-mariadb.R | 4 shiny.telemetry-0.3.0/shiny.telemetry/R/data-storage-mongodb.R |only shiny.telemetry-0.3.0/shiny.telemetry/R/data-storage-mssqlserver.R | 27 shiny.telemetry-0.3.0/shiny.telemetry/R/data-storage-plumber.R | 4 shiny.telemetry-0.3.0/shiny.telemetry/R/data-storage-postgresql.R | 29 shiny.telemetry-0.3.0/shiny.telemetry/R/data-storage-sql-family.R | 6 shiny.telemetry-0.3.0/shiny.telemetry/R/data-storage-sqlite.R | 11 shiny.telemetry-0.3.0/shiny.telemetry/R/data-storage.R | 12 shiny.telemetry-0.3.0/shiny.telemetry/R/fake_functions.R | 2 shiny.telemetry-0.3.0/shiny.telemetry/R/prepare-admin-panel.R | 208 +++-- shiny.telemetry-0.3.0/shiny.telemetry/R/shiny.telemetry.R | 2 shiny.telemetry-0.3.0/shiny.telemetry/R/telemetry.R | 379 ++++++++-- shiny.telemetry-0.3.0/shiny.telemetry/R/ui_elements.R | 60 + shiny.telemetry-0.3.0/shiny.telemetry/README.md | 10 shiny.telemetry-0.3.0/shiny.telemetry/build |only shiny.telemetry-0.3.0/shiny.telemetry/inst/WORDLIST | 21 shiny.telemetry-0.3.0/shiny.telemetry/inst/doc |only shiny.telemetry-0.3.0/shiny.telemetry/inst/examples/app/README.md |only shiny.telemetry-0.3.0/shiny.telemetry/inst/examples/app/analytics/app.R | 7 shiny.telemetry-0.3.0/shiny.telemetry/inst/examples/app/instrumentation/user_stats.txt | 185 ---- shiny.telemetry-0.3.0/shiny.telemetry/inst/examples/mariadb/mariadb_analytics.R | 2 shiny.telemetry-0.3.0/shiny.telemetry/inst/examples/mariadb/mariadb_app.R | 2 shiny.telemetry-0.3.0/shiny.telemetry/inst/examples/mongodb |only shiny.telemetry-0.3.0/shiny.telemetry/inst/examples/mssql/README.md | 19 shiny.telemetry-0.3.0/shiny.telemetry/inst/examples/mssql/docker-compose.yml | 13 shiny.telemetry-0.3.0/shiny.telemetry/inst/examples/mssql/mssql_analytics.R | 2 shiny.telemetry-0.3.0/shiny.telemetry/inst/examples/mssql/mssql_app.R | 2 shiny.telemetry-0.3.0/shiny.telemetry/inst/examples/postgresql/postgres_analytics.R | 2 shiny.telemetry-0.3.0/shiny.telemetry/inst/examples/postgresql/postgres_app.R | 2 shiny.telemetry-0.3.0/shiny.telemetry/inst/examples/sqlite |only shiny.telemetry-0.3.0/shiny.telemetry/inst/js |only shiny.telemetry-0.3.0/shiny.telemetry/man/DataStorage.Rd | 4 shiny.telemetry-0.3.0/shiny.telemetry/man/DataStorageLogFile.Rd | 6 shiny.telemetry-0.3.0/shiny.telemetry/man/DataStorageMSSQLServer.Rd | 25 shiny.telemetry-0.3.0/shiny.telemetry/man/DataStorageMariaDB.Rd | 2 shiny.telemetry-0.3.0/shiny.telemetry/man/DataStorageMongoDB.Rd |only shiny.telemetry-0.3.0/shiny.telemetry/man/DataStoragePlumber.Rd | 2 shiny.telemetry-0.3.0/shiny.telemetry/man/DataStoragePostgreSQL.Rd | 10 shiny.telemetry-0.3.0/shiny.telemetry/man/DataStorageSQLFamily.Rd | 2 shiny.telemetry-0.3.0/shiny.telemetry/man/DataStorageSQLite.Rd | 4 shiny.telemetry-0.3.0/shiny.telemetry/man/Telemetry.Rd | 191 +++-- shiny.telemetry-0.3.0/shiny.telemetry/man/analytics_app.Rd | 2 shiny.telemetry-0.3.0/shiny.telemetry/man/build_token.Rd | 2 shiny.telemetry-0.3.0/shiny.telemetry/man/figures/shiny-telemetry.png |binary shiny.telemetry-0.3.0/shiny.telemetry/man/use_telemetry.Rd | 2 shiny.telemetry-0.3.0/shiny.telemetry/tests/testthat/helper-data_storage.R | 67 + shiny.telemetry-0.3.0/shiny.telemetry/tests/testthat/helper-init-data-storage.R | 20 shiny.telemetry-0.3.0/shiny.telemetry/tests/testthat/helper-telemetry.R | 2 shiny.telemetry-0.3.0/shiny.telemetry/tests/testthat/test-auxiliary_functions.R | 97 ++ shiny.telemetry-0.3.0/shiny.telemetry/tests/testthat/test-data-storage-mongodb.R |only shiny.telemetry-0.3.0/shiny.telemetry/tests/testthat/test-data-storage-postgresql.R | 10 shiny.telemetry-0.3.0/shiny.telemetry/tests/testthat/test-telemetry.R | 2 shiny.telemetry-0.3.0/shiny.telemetry/vignettes |only 64 files changed, 1218 insertions(+), 572 deletions(-)
More information about shiny.telemetry at CRAN
Permanent link
Title: Spherical Geometry Operators Using the S2 Geometry Library
Description: Provides R bindings for Google's s2 library for geometric calculations on
the sphere. High-performance constructors and exporters provide high compatibility
with existing spatial packages, transformers construct new geometries from existing
geometries, predicates provide a means to select geometries based on spatial
relationships, and accessors extract information about geometries.
Author: Dewey Dunnington [aut] ,
Edzer Pebesma [aut, cre] ,
Ege Rubak [aut],
Jeroen Ooms [ctb] ,
Google, Inc. [cph]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between s2 versions 1.1.6 dated 2023-12-19 and 1.1.7 dated 2024-07-17
DESCRIPTION | 6 - MD5 | 8 - build/partial.rdb |binary src/Makevars.in | 2 src/Makevars.ucrt | 226 +++++++++++++++++++++++++++++++++++++++++++++++++++++- 5 files changed, 231 insertions(+), 11 deletions(-)
Title: Multiomics Data Integration
Description: Provides functions to do 'O2PLS-DA' analysis for multiple omics data integration.
The algorithm came from "O2-PLS, a two-block (X±Y) latent variable regression (LVR) method with an integral OSC filter"
which published by Johan Trygg and Svante Wold at 2003 <doi:10.1002/cem.775>.
'O2PLS' is a bidirectional multivariate regression method that aims to separate the covariance between
two data sets (it was recently extended to multiple data sets) (Löfstedt and Trygg, 2011 <doi:10.1002/cem.1388>; Löfstedt et al., 2012 <doi:10.1016/j.aca.2013.06.026>)
from the systematic sources of variance being specific for each data set separately.
Author: Kai Guo [aut, cre],
Junguk Hur [aut],
Eva Feldman [aut]
Maintainer: Kai Guo <guokai8@gmail.com>
Diff between o2plsda versions 0.0.18 dated 2022-08-12 and 0.0.22 dated 2024-07-17
DESCRIPTION | 8 MD5 | 26 +- R/o2pls.R | 61 ++++-- R/o2plscv.R | 39 ++-- R/o2plsda.R | 27 +-- R/plsda.R | 23 +- README.md | 57 ++++-- build/vignette.rds |binary inst/doc/o2plsda.html | 448 +++++++++++++++++++------------------------------- man/o2pls.Rd | 6 man/oplsda.Rd | 27 +-- man/plsda.Rd | 23 +- src/Makevars | 3 src/Makevars.win | 2 14 files changed, 350 insertions(+), 400 deletions(-)
Title: Phylogenetic Tree Statistics
Description: Collection of phylogenetic tree statistics,
collected throughout the literature. All functions have been
written to maximize computation speed. The package includes
umbrella functions to calculate all statistics, all balance
associated statistics, or all branching time related statistics.
Furthermore, the 'treestats' package supports summary statistic
calculations on Ltables, provides speed-improved coding of
branching times, Ltable conversion and includes algorithms to
create intermediately balanced trees. Full description can be
found in Janzen (2023) <doi:10.1101/2024.01.24.576848>.
Author: Thijs Janzen [cre, aut]
Maintainer: Thijs Janzen <thijsjanzen@gmail.com>
Diff between treestats versions 1.0.5 dated 2024-01-30 and 1.70.4 dated 2024-07-17
treestats-1.0.5/treestats/R/calc_balance_stats.R |only treestats-1.0.5/treestats/R/eigenvector.R |only treestats-1.0.5/treestats/inst/doc/demonstration.R |only treestats-1.0.5/treestats/inst/doc/demonstration.Rmd |only treestats-1.0.5/treestats/inst/doc/demonstration.html |only treestats-1.0.5/treestats/man/calc_balance_stats.Rd |only treestats-1.0.5/treestats/man/eigen_vector.Rd |only treestats-1.0.5/treestats/man/prep_lapl_spec.Rd |only treestats-1.0.5/treestats/src/util.h |only treestats-1.0.5/treestats/tests/testthat/test-balance_stats.R |only treestats-1.0.5/treestats/tests/testthat/test-eigenvector.R |only treestats-1.0.5/treestats/vignettes/demonstration.Rmd |only treestats-1.70.4/treestats/DESCRIPTION | 19 treestats-1.70.4/treestats/MD5 | 367 ++--- treestats-1.70.4/treestats/NAMESPACE | 19 treestats-1.70.4/treestats/NEWS.md | 73 - treestats-1.70.4/treestats/R/ILnumber.R | 5 treestats-1.70.4/treestats/R/Ibased.R | 6 treestats-1.70.4/treestats/R/J_stat.R | 4 treestats-1.70.4/treestats/R/RcppExports.R | 64 treestats-1.70.4/treestats/R/area_per_pair.R | 4 treestats-1.70.4/treestats/R/average_leaf_depth.R | 6 treestats-1.70.4/treestats/R/avgLadder.R | 5 treestats-1.70.4/treestats/R/avg_vertex_depth.R |only treestats-1.70.4/treestats/R/b1.R | 9 treestats-1.70.4/treestats/R/b2.R | 10 treestats-1.70.4/treestats/R/beta.R | 18 treestats-1.70.4/treestats/R/blum.R | 12 treestats-1.70.4/treestats/R/branching_times.R | 2 treestats-1.70.4/treestats/R/calc_all_stats.R | 295 ++-- treestats-1.70.4/treestats/R/calc_brts_stats.R | 12 treestats-1.70.4/treestats/R/calc_topology_stats.R |only treestats-1.70.4/treestats/R/cherries.R | 3 treestats-1.70.4/treestats/R/colless.R | 97 + treestats-1.70.4/treestats/R/create_bal_unbal_tree.R |only treestats-1.70.4/treestats/R/crown_age.R | 4 treestats-1.70.4/treestats/R/diameter.R | 5 treestats-1.70.4/treestats/R/double_cherries.R |only treestats-1.70.4/treestats/R/eigen_centrality.R |only treestats-1.70.4/treestats/R/four_prong.R |only treestats-1.70.4/treestats/R/gamma.R | 6 treestats-1.70.4/treestats/R/imbal_steps.R | 4 treestats-1.70.4/treestats/R/j_one_stat.R | 7 treestats-1.70.4/treestats/R/list_statistics.R | 32 treestats-1.70.4/treestats/R/make_unbalanced_tree.R | 17 treestats-1.70.4/treestats/R/max_betweenness.R | 13 treestats-1.70.4/treestats/R/max_closeness.R | 6 treestats-1.70.4/treestats/R/max_del_width.R | 11 treestats-1.70.4/treestats/R/max_depth.R | 2 treestats-1.70.4/treestats/R/max_ladder.R | 9 treestats-1.70.4/treestats/R/max_width.R | 2 treestats-1.70.4/treestats/R/mean_branch_length.R | 16 treestats-1.70.4/treestats/R/mean_pair_dist.R | 14 treestats-1.70.4/treestats/R/minmax_adj.R |only treestats-1.70.4/treestats/R/minmax_laplace.R |only treestats-1.70.4/treestats/R/mntd.R | 19 treestats-1.70.4/treestats/R/mw_over_md.R |only treestats-1.70.4/treestats/R/nLTT.R | 9 treestats-1.70.4/treestats/R/number_of_lineages.R | 2 treestats-1.70.4/treestats/R/phylogenetic_diversity.R | 3 treestats-1.70.4/treestats/R/pigot_rho.R | 17 treestats-1.70.4/treestats/R/pitchforks.R | 10 treestats-1.70.4/treestats/R/psv.R | 6 treestats-1.70.4/treestats/R/rogers.R | 18 treestats-1.70.4/treestats/R/root_imbalance.R |only treestats-1.70.4/treestats/R/rpanda.R | 4 treestats-1.70.4/treestats/R/rquartet.R | 2 treestats-1.70.4/treestats/R/sackin.R | 17 treestats-1.70.4/treestats/R/stairs.R | 20 treestats-1.70.4/treestats/R/sym_nodes.R | 6 treestats-1.70.4/treestats/R/tot_coph.R | 6 treestats-1.70.4/treestats/R/tot_internal_path.R |only treestats-1.70.4/treestats/R/tot_path.R |only treestats-1.70.4/treestats/R/treeness.R |only treestats-1.70.4/treestats/R/util.R | 62 treestats-1.70.4/treestats/R/var_leaf_depth.R | 2 treestats-1.70.4/treestats/R/var_pair_dist.R | 8 treestats-1.70.4/treestats/R/wiener.R | 6 treestats-1.70.4/treestats/README.md | 710 ++++++++-- treestats-1.70.4/treestats/build/vignette.rds |binary treestats-1.70.4/treestats/inst/doc/Example_abc.R |only treestats-1.70.4/treestats/inst/doc/Example_abc.Rmd |only treestats-1.70.4/treestats/inst/doc/Example_abc.html |only treestats-1.70.4/treestats/inst/doc/Example_data.R |only treestats-1.70.4/treestats/inst/doc/Example_data.Rmd |only treestats-1.70.4/treestats/inst/doc/Example_data.html |only treestats-1.70.4/treestats/inst/doc/Getting_started.R |only treestats-1.70.4/treestats/inst/doc/Getting_started.Rmd |only treestats-1.70.4/treestats/inst/doc/Getting_started.html |only treestats-1.70.4/treestats/inst/doc/Speed_improvement.R |only treestats-1.70.4/treestats/inst/doc/Speed_improvement.Rmd |only treestats-1.70.4/treestats/inst/doc/Speed_improvement.html |only treestats-1.70.4/treestats/inst/include/avgladder.h | 5 treestats-1.70.4/treestats/inst/include/branching_times.h | 29 treestats-1.70.4/treestats/inst/include/centralities.h | 2 treestats-1.70.4/treestats/inst/include/colless.h | 99 + treestats-1.70.4/treestats/inst/include/depth.h | 31 treestats-1.70.4/treestats/inst/include/dist_nodes.h | 32 treestats-1.70.4/treestats/inst/include/gamma.h | 8 treestats-1.70.4/treestats/inst/include/imbalance_steps.h | 8 treestats-1.70.4/treestats/inst/include/ltable.h | 6 treestats-1.70.4/treestats/inst/include/max_depth.h | 10 treestats-1.70.4/treestats/inst/include/mntd.h | 2 treestats-1.70.4/treestats/inst/include/mpd.h | 7 treestats-1.70.4/treestats/inst/include/phylo2L.h | 17 treestats-1.70.4/treestats/inst/include/phylodiv.h | 28 treestats-1.70.4/treestats/inst/include/phylotree.h | 9 treestats-1.70.4/treestats/inst/include/root_imbal.h |only treestats-1.70.4/treestats/inst/include/util.h |only treestats-1.70.4/treestats/man/ILnumber.Rd | 2 treestats-1.70.4/treestats/man/area_per_pair.Rd | 4 treestats-1.70.4/treestats/man/average_leaf_depth.Rd | 4 treestats-1.70.4/treestats/man/avg_vert_depth.Rd |only treestats-1.70.4/treestats/man/b1.Rd | 4 treestats-1.70.4/treestats/man/b2.Rd | 6 treestats-1.70.4/treestats/man/beta_statistic.Rd | 15 treestats-1.70.4/treestats/man/blum.Rd | 9 treestats-1.70.4/treestats/man/branching_times.Rd | 2 treestats-1.70.4/treestats/man/calc_all_stats.Rd | 6 treestats-1.70.4/treestats/man/calc_brts_stats.Rd | 6 treestats-1.70.4/treestats/man/calc_topology_stats.Rd |only treestats-1.70.4/treestats/man/colless.Rd | 13 treestats-1.70.4/treestats/man/colless_corr.Rd |only treestats-1.70.4/treestats/man/colless_quad.Rd |only treestats-1.70.4/treestats/man/create_fully_balanced_tree.Rd |only treestats-1.70.4/treestats/man/create_fully_unbalanced_tree.Rd |only treestats-1.70.4/treestats/man/crown_age.Rd | 2 treestats-1.70.4/treestats/man/diameter.Rd | 2 treestats-1.70.4/treestats/man/double_cherries.Rd |only treestats-1.70.4/treestats/man/eigen_centrality.Rd |only treestats-1.70.4/treestats/man/entropy_j.Rd | 3 treestats-1.70.4/treestats/man/ew_colless.Rd | 14 treestats-1.70.4/treestats/man/four_prong.Rd |only treestats-1.70.4/treestats/man/gamma_statistic.Rd | 2 treestats-1.70.4/treestats/man/imbalance_steps.Rd | 2 treestats-1.70.4/treestats/man/j_one.Rd | 2 treestats-1.70.4/treestats/man/laplacian_spectrum.Rd | 2 treestats-1.70.4/treestats/man/make_unbalanced_tree.Rd | 17 treestats-1.70.4/treestats/man/max_betweenness.Rd | 2 treestats-1.70.4/treestats/man/max_closeness.Rd | 2 treestats-1.70.4/treestats/man/max_del_width.Rd | 11 treestats-1.70.4/treestats/man/max_depth.Rd | 2 treestats-1.70.4/treestats/man/max_ladder.Rd | 4 treestats-1.70.4/treestats/man/max_width.Rd | 2 treestats-1.70.4/treestats/man/mean_branch_length.Rd | 4 treestats-1.70.4/treestats/man/mean_branch_length_ext.Rd | 4 treestats-1.70.4/treestats/man/mean_branch_length_int.Rd | 6 treestats-1.70.4/treestats/man/mean_i.Rd | 2 treestats-1.70.4/treestats/man/mean_pair_dist.Rd | 1 treestats-1.70.4/treestats/man/minmax_adj.Rd |only treestats-1.70.4/treestats/man/minmax_laplace.Rd |only treestats-1.70.4/treestats/man/mw_over_md.Rd |only treestats-1.70.4/treestats/man/nLTT.Rd | 2 treestats-1.70.4/treestats/man/nLTT_base.Rd | 3 treestats-1.70.4/treestats/man/number_of_lineages.Rd | 4 treestats-1.70.4/treestats/man/phylogenetic_diversity.Rd | 2 treestats-1.70.4/treestats/man/pigot_rho.Rd | 8 treestats-1.70.4/treestats/man/pitchforks.Rd | 7 treestats-1.70.4/treestats/man/psv.Rd | 2 treestats-1.70.4/treestats/man/rogers.Rd | 13 treestats-1.70.4/treestats/man/root_imbalance.Rd |only treestats-1.70.4/treestats/man/rquartet.Rd | 2 treestats-1.70.4/treestats/man/sackin.Rd | 13 treestats-1.70.4/treestats/man/stairs.Rd | 13 treestats-1.70.4/treestats/man/stairs2.Rd | 6 treestats-1.70.4/treestats/man/sym_nodes.Rd | 2 treestats-1.70.4/treestats/man/tot_coph.Rd | 2 treestats-1.70.4/treestats/man/tot_internal_path.Rd |only treestats-1.70.4/treestats/man/tot_path_length.Rd |only treestats-1.70.4/treestats/man/tree_height.Rd | 2 treestats-1.70.4/treestats/man/treeness.Rd |only treestats-1.70.4/treestats/man/var_branch_length.Rd | 4 treestats-1.70.4/treestats/man/var_branch_length_ext.Rd | 4 treestats-1.70.4/treestats/man/var_branch_length_int.Rd | 8 treestats-1.70.4/treestats/man/var_leaf_depth.Rd | 2 treestats-1.70.4/treestats/man/var_pair_dist.Rd | 2 treestats-1.70.4/treestats/man/wiener.Rd | 2 treestats-1.70.4/treestats/src/Makevars | 1 treestats-1.70.4/treestats/src/Makevars.win | 1 treestats-1.70.4/treestats/src/RcppExports.cpp | 188 ++ treestats-1.70.4/treestats/src/brts.cpp | 22 treestats-1.70.4/treestats/src/colless.cpp | 136 + treestats-1.70.4/treestats/src/depth.cpp | 31 treestats-1.70.4/treestats/src/laplacian.cpp | 44 treestats-1.70.4/treestats/src/phylo.cpp | 2 treestats-1.70.4/treestats/tests/testthat/test-allstats.R | 22 treestats-1.70.4/treestats/tests/testthat/test-avg_vertex_depth.R |only treestats-1.70.4/treestats/tests/testthat/test-beta.R | 9 treestats-1.70.4/treestats/tests/testthat/test-branching_times.R | 9 treestats-1.70.4/treestats/tests/testthat/test-brlen.R | 13 treestats-1.70.4/treestats/tests/testthat/test-brts_stats.R | 2 treestats-1.70.4/treestats/tests/testthat/test-colless_corr.R |only treestats-1.70.4/treestats/tests/testthat/test-colless_quad.R |only treestats-1.70.4/treestats/tests/testthat/test-create_bal_unbal_tree.R |only treestats-1.70.4/treestats/tests/testthat/test-crown_age.R | 5 treestats-1.70.4/treestats/tests/testthat/test-double_cherries.R |only treestats-1.70.4/treestats/tests/testthat/test-eigen_centrality.R |only treestats-1.70.4/treestats/tests/testthat/test-four_prong.R |only treestats-1.70.4/treestats/tests/testthat/test-imbal_steps.R | 30 treestats-1.70.4/treestats/tests/testthat/test-j_one.R | 37 treestats-1.70.4/treestats/tests/testthat/test-list_statistics.R | 5 treestats-1.70.4/treestats/tests/testthat/test-max_betweenness.R | 55 treestats-1.70.4/treestats/tests/testthat/test-max_closeness.R | 17 treestats-1.70.4/treestats/tests/testthat/test-minmax_adj.R |only treestats-1.70.4/treestats/tests/testthat/test-minmax_laplace.R |only treestats-1.70.4/treestats/tests/testthat/test-mntd.R | 11 treestats-1.70.4/treestats/tests/testthat/test-mw_over_md.R |only treestats-1.70.4/treestats/tests/testthat/test-nltt.R | 7 treestats-1.70.4/treestats/tests/testthat/test-pigot_rho.R | 6 treestats-1.70.4/treestats/tests/testthat/test-polytomies.R |only treestats-1.70.4/treestats/tests/testthat/test-rebase_ltable.R |only treestats-1.70.4/treestats/tests/testthat/test-root_imbalance.R |only treestats-1.70.4/treestats/tests/testthat/test-rpanda.R | 2 treestats-1.70.4/treestats/tests/testthat/test-rquartet.R | 1 treestats-1.70.4/treestats/tests/testthat/test-topology_stats.R |only treestats-1.70.4/treestats/tests/testthat/test-tot_internal_path.R |only treestats-1.70.4/treestats/tests/testthat/test-tot_path.R |only treestats-1.70.4/treestats/tests/testthat/test-treeness.R |only treestats-1.70.4/treestats/tests/testthat/test-util.R |only treestats-1.70.4/treestats/vignettes/Example_abc.Rmd |only treestats-1.70.4/treestats/vignettes/Example_data.Rmd |only treestats-1.70.4/treestats/vignettes/Getting_started.Rmd |only treestats-1.70.4/treestats/vignettes/Speed_improvement.Rmd |only 223 files changed, 2436 insertions(+), 878 deletions(-)
Title: Read and Modify 'STICS' Input/Output Files
Description: Manipulating input and output files of the 'STICS' crop
model. Files are either 'JavaSTICS' XML files or text files used by
the model 'fortran' executable. Most basic functionalities are reading
or writing parameter names and values in both XML or text input files,
and getting data from output files. Advanced functionalities include
XML files generation from XML templates and/or spreadsheets, or text
files generation from XML files by using 'xslt' transformation.
Author: Patrice Lecharpentier [aut, cre]
,
Remi Vezy [aut] ,
Samuel Buis [aut] ,
Michel Giner [aut] ,
Timothee Flutre [ctb],
Thomas Robine [ctb],
Amine Barkaoui [ctb],
Patrick Chabrier [ctb],
Julie Constantin [rev],
Dominique Ripoche [rev],
Marie Launay [rev [...truncated...]
Maintainer: Patrice Lecharpentier <patrice.lecharpentier@inrae.fr>
Diff between SticsRFiles versions 1.3.0 dated 2024-04-11 and 1.4.0 dated 2024-07-17
SticsRFiles-1.3.0/SticsRFiles/R/compute_doy_cumul.R |only SticsRFiles-1.3.0/SticsRFiles/tests/testthat/test-compute_doy_cumul.R |only SticsRFiles-1.4.0/SticsRFiles/DESCRIPTION | 17 SticsRFiles-1.4.0/SticsRFiles/MD5 | 59 +- SticsRFiles-1.4.0/SticsRFiles/NAMESPACE | 3 SticsRFiles-1.4.0/SticsRFiles/NEWS.md | 18 SticsRFiles-1.4.0/SticsRFiles/R/compute_date_from_day.R |only SticsRFiles-1.4.0/SticsRFiles/R/compute_day_number.R | 116 +++-- SticsRFiles-1.4.0/SticsRFiles/R/get_cultivars_list.R |only SticsRFiles-1.4.0/SticsRFiles/R/get_cultivars_param.R |only SticsRFiles-1.4.0/SticsRFiles/R/get_param_txt.R | 138 +++++- SticsRFiles-1.4.0/SticsRFiles/R/get_param_xml.R | 4 SticsRFiles-1.4.0/SticsRFiles/R/set_param_txt.R | 219 +++++++--- SticsRFiles-1.4.0/SticsRFiles/R/set_param_xml.R | 25 + SticsRFiles-1.4.0/SticsRFiles/README.md | 6 SticsRFiles-1.4.0/SticsRFiles/inst/doc/Generating_Stics_XML_files.html | 4 SticsRFiles-1.4.0/SticsRFiles/inst/doc/Generating_Stics_text_files.html | 4 SticsRFiles-1.4.0/SticsRFiles/inst/doc/Manipulating_Stics_XML_files.html | 68 +-- SticsRFiles-1.4.0/SticsRFiles/inst/doc/Manipulating_Stics_text_files.html | 14 SticsRFiles-1.4.0/SticsRFiles/inst/doc/SticsRFiles.html | 4 SticsRFiles-1.4.0/SticsRFiles/inst/doc/Upgrading_STICS_XML_files.html | 4 SticsRFiles-1.4.0/SticsRFiles/inst/extdata/xml.zip |binary SticsRFiles-1.4.0/SticsRFiles/man/compute_date_from_day.Rd |only SticsRFiles-1.4.0/SticsRFiles/man/compute_day_from_date.Rd | 36 + SticsRFiles-1.4.0/SticsRFiles/man/get_cultivars_list.Rd |only SticsRFiles-1.4.0/SticsRFiles/man/get_cultivars_param.Rd |only SticsRFiles-1.4.0/SticsRFiles/man/get_param_txt.Rd | 24 + SticsRFiles-1.4.0/SticsRFiles/man/get_param_xml.Rd | 4 SticsRFiles-1.4.0/SticsRFiles/man/set_param_txt.Rd | 31 - SticsRFiles-1.4.0/SticsRFiles/man/set_param_xml.Rd | 25 + SticsRFiles-1.4.0/SticsRFiles/tests/testthat/test-compute_date.R |only SticsRFiles-1.4.0/SticsRFiles/tests/testthat/test-compute_day_number.R | 29 - SticsRFiles-1.4.0/SticsRFiles/tests/testthat/test-get_cultivars_list.R |only SticsRFiles-1.4.0/SticsRFiles/tests/testthat/test-get_cultivars_param.R |only SticsRFiles-1.4.0/SticsRFiles/tests/testthat/test-set_get_param_txt.R | 150 ++++++ SticsRFiles-1.4.0/SticsRFiles/tests/testthat/test-set_get_param_xml.R | 174 ++++--- 36 files changed, 874 insertions(+), 302 deletions(-)
Title: Bayesian Functional Linear Regression with Sparse Step Functions
Description: A method for the Bayesian functional linear regression model (scalar-on-function),
including two estimators of the coefficient function and an estimator of its support.
A representation of the posterior distribution is also available. Grollemund P-M., Abraham C.,
Baragatti M., Pudlo P. (2019) <doi:10.1214/18-BA1095>.
Author: Paul-Marie Grollemund [aut, cre],
Isabelle Sanchez [ctr],
Meili Baragatti [ctr]
Maintainer: Paul-Marie Grollemund <paul_marie.grollemund@uca.fr>
Diff between bliss versions 1.1.0 dated 2024-05-14 and 1.1.1 dated 2024-07-17
DESCRIPTION | 8 - MD5 | 30 ++--- NAMESPACE | 1 R/Auxiliary_and_graphics_functions.R | 8 + R/Bliss_Gibbs_Sampler.R | 6 - R/RcppExports.R | 20 +-- R/basic_functions.R | 4 inst/doc/BlissIntro.R | 16 +- inst/doc/BlissIntro.Rmd | 4 inst/doc/BlissIntro.html | 39 ++---- man/compute_beta_posterior_density.Rd | 4 man/image_Bliss.Rd | 2 man/lines_bliss.Rd | 3 src/RcppExports.cpp | 56 +++------ src/bliss_rcpp_functions.cpp | 204 +++++++++++++++++++++++----------- vignettes/BlissIntro.Rmd | 4 16 files changed, 233 insertions(+), 176 deletions(-)
More information about charlesschwabapi at CRAN
Permanent link
Title: Analysis of Data from Limiting Dilution Assay (LDA) with or
without Cellular Cooperation
Description: Cellular cooperation compromises the established method of
calculating clonogenic activity from limiting dilution assay (LDA) data.
This tool provides functions that enable robust analysis in presence or
absence of cellular cooperation. The implemented method incorporates the
same cooperativity module to model the non-linearity associated with
cellular cooperation as known from the colony formation assay (Brix et al.
(2021) <doi:10.1038/s41596-021-00615-0>: "Analysis of clonogenic growth in
vitro." Nature protocols).
Author: Daniel Samaga [cre, aut],
Nikko Brix [aut],
Benedek Danko [aut],
Kirsten Lauber [aut],
Horst Zitzelsberger [aut]
Maintainer: Daniel Samaga <daniel.samaga@helmholtz-munich.de>
Diff between LDAcoop versions 0.1.1 dated 2023-10-09 and 0.1.2 dated 2024-07-17
DESCRIPTION | 6 - MD5 | 18 ++-- R/LDA_activity_single.R | 79 ++++++++++++++++---- R/LDA_plot_activity.R | 2 data/LDAdata.RData |binary inst/doc/LDAcoop.Rmd | 69 +++++++++--------- inst/doc/LDAcoop.html | 114 +++++++++++++++--------------- tests/testthat/Rplots.pdf |binary tests/testthat/test-LDA_activity_single.R | 16 ++++ vignettes/LDAcoop.Rmd | 69 +++++++++--------- 10 files changed, 227 insertions(+), 146 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-01 1.0-4
2015-01-30 1.0-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-08 0.1.2
2023-09-06 0.1.1
2022-09-20 0.1.0
Title: Species Distribution Modelling
Description: An extensible framework for developing species distribution
models using individual and community-based approaches, generate ensembles of
models, evaluate the models, and predict species potential distributions in
space and time. For more information, please check the following paper:
Naimi, B., Araujo, M.B. (2016) <doi:10.1111/ecog.01881>.
Author: Babak Naimi, Miguel B. Araujo
Maintainer: Babak Naimi <naimi.b@gmail.com>
Diff between sdm versions 1.2-40 dated 2024-05-01 and 1.2-46 dated 2024-07-17
DESCRIPTION | 8 +++--- MD5 | 18 +++++++------- R/AAAClasses.R | 20 ++++++++-------- R/adapt.R | 21 +++++++++++++++-- R/background.R | 6 +++- R/ensemble.R | 6 ++-- R/evaluates.R | 64 ++++++++++++++++++++++++++++------------------------- R/utilities.R | 6 ++-- build/vignette.rds |binary man/evaluates.Rd | 4 +-- 10 files changed, 89 insertions(+), 64 deletions(-)
Title: Simulating Data to Study Performance of Clustering Algorithms
Description: The utility of this package is in simulating mixtures of Gaussian
distributions with different levels of overlap between mixture
components. Pairwise overlap, defined as a sum of two
misclassification probabilities, measures the degree of
interaction between components and can be readily employed to
control the clustering complexity of datasets simulated from
mixtures. These datasets can then be used for systematic
performance investigation of clustering and finite mixture
modeling algorithms. Among other capabilities of 'MixSim', there
are computing the exact overlap for Gaussian mixtures,
simulating Gaussian and non-Gaussian data, simulating outliers
and noise variables, calculating various measures of agreement
between two partitionings, and constructing parallel
distribution plots for the graphical display of finite mixture
models.
Author: Volodymyr Melnykov [aut],
Wei-Chen Chen [aut, cre],
Ranjan Maitra [aut],
Robert Davies [ctb] ,
Stephen Moshier [ctb] ,
Rouben Rostamian [ctb]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between MixSim versions 1.1-7 dated 2023-09-05 and 1.1-8 dated 2024-07-17
ChangeLog | 3 +++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/main.R | 3 +++ man/MixSim.Rd | 2 ++ 5 files changed, 16 insertions(+), 8 deletions(-)