Title: R Interface to the 'QuantLib' Library
Description: The 'RQuantLib' package makes parts of 'QuantLib' accessible from R
The 'QuantLib' project aims to provide a comprehensive software framework
for quantitative finance. The goal is to provide a standard open source library
for quantitative analysis, modeling, trading, and risk management of financial
assets.
Author: Dirk Eddelbuettel, Khanh Nguyen , Terry Leitch
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RQuantLib versions 0.4.22 dated 2024-04-25 and 0.4.23 dated 2024-07-23
ChangeLog | 59 +++++++ DESCRIPTION | 8 - MD5 | 40 ++--- README.md | 8 - configure | 18 +- configure.ac | 2 data/tsQuotes.RData |binary data/vcube.RData |binary inst/include/rquantlib_internal.h | 15 +- inst/tinytest/test_options.R | 1 src/affine.cpp | 72 ++++----- src/asian.cpp | 63 +++----- src/barrier_binary.cpp | 158 +++++++-------------- src/bermudan.cpp | 181 +++++++++++------------- src/bonds.cpp | 177 +++++++++-------------- src/discount.cpp | 15 -- src/hullwhite.cpp | 39 ++--- src/implieds.cpp | 82 +++-------- src/utils.cpp | 282 ++++++++++++++++++-------------------- src/vanilla.cpp | 186 ++++++++----------------- src/zero.cpp | 19 +- 21 files changed, 632 insertions(+), 793 deletions(-)
Title: Decision Curve Analysis for Model Evaluation
Description: Diagnostic and prognostic models are typically evaluated with
measures of accuracy that do not address clinical consequences.
Decision-analytic techniques allow assessment of clinical outcomes,
but often require collection of additional information may be
cumbersome to apply to models that yield a continuous result. Decision
curve analysis is a method for evaluating and comparing prediction
models that incorporates clinical consequences, requires only the data
set on which the models are tested, and can be applied to models that
have either continuous or dichotomous results. See the following references
for details on the methods: Vickers (2006) <doi:10.1177/0272989X06295361>,
Vickers (2008) <doi:10.1186/1472-6947-8-53>,
and Pfeiffer (2020) <doi:10.1002/bimj.201800240>.
Author: Daniel D. Sjoberg [aut, cre, cph]
,
Emily Vertosick [ctb]
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between dcurves versions 0.4.0 dated 2022-12-23 and 0.5.0 dated 2024-07-23
DESCRIPTION | 18 LICENSE | 4 MD5 | 86 NAMESPACE | 78 NEWS.md | 4 R/as_tibble.R | 32 R/data.r | 88 R/dca.r | 525 ++-- R/dcurves-package.R | 28 R/net_intervention_avoided.R | 107 R/plot.R | 316 +- R/print.R | 52 R/reexport.R | 94 R/standardize_net_benefit.R | 63 R/test_consequences.R | 624 ++-- README.md | 206 - build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 56 inst/doc/dca.R | 296 +- inst/doc/dca.Rmd | 702 ++--- inst/doc/dca.html | 3209 ++++++++++++------------- man/as_tibble.dca.Rd | 58 man/dca.Rd | 202 - man/dcurves-package.Rd | 58 man/df_binary.Rd | 52 man/df_case_control.Rd | 50 man/df_surv.Rd | 54 man/net_intervention_avoided.Rd | 78 man/plot.dca.Rd | 128 man/print.dca.Rd | 48 man/reexports.Rd | 64 man/standardized_net_benefit.Rd | 54 man/test_consequences.Rd | 142 - tests/spelling.R | 6 tests/testthat.R | 8 tests/testthat/test-as_tibble.R | 16 tests/testthat/test-dca.R | 250 - tests/testthat/test-net_intervention_avoided.R | 40 tests/testthat/test-plot.R | 102 tests/testthat/test-standardize_net_benefit.R | 52 tests/testthat/test-test_consequences.R | 90 vignettes/dca.Rmd | 702 ++--- vignettes/references.bib | 64 44 files changed, 4501 insertions(+), 4405 deletions(-)
Title: Extracting and Visualizing Output from 'jagsUI'
Description: Tools are provided to streamline Bayesian analyses in 'JAGS' using
the 'jagsUI' package. Included are functions for extracting output in
simpler format, functions for streamlining assessment of convergence, and
functions for producing summary plots of output. Also included is a
function that provides a simple template for running 'JAGS' from 'R'.
Referenced materials can be found at <DOI:10.1214/ss/1177011136>.
Author: Matt Tyers [aut, cre]
Maintainer: Matt Tyers <matttyersstat@gmail.com>
Diff between jagshelper versions 0.2.4 dated 2024-07-01 and 0.3.0 dated 2024-07-23
DESCRIPTION | 8 MD5 | 81 - NAMESPACE | 5 NEWS.md | 7 R/bivariate.R |only R/caterpillar.R |only R/density.R |only R/diagnostic_plots.R |only R/envelope.R |only R/jagshelper1.R | 2006 -------------------------------------- R/summarize.R |only R/trace.R |only README.md | 9 inst/doc/jagshelper-vignette.R | 25 inst/doc/jagshelper-vignette.Rmd | 45 inst/doc/jagshelper-vignette.html | 66 + man/caterpillar.Rd | 4 man/chaindens_df.Rd | 2 man/chaindens_jags.Rd | 2 man/chaindens_line.Rd | 2 man/check_Rhat.Rd | 2 man/check_neff.Rd | 2 man/comparecat.Rd | 4 man/comparedens.Rd | 2 man/comparepriors.Rd | 2 man/cor_jags.Rd | 2 man/crossplot.Rd |only man/envelope.Rd | 2 man/jagshelper-package.Rd | 8 man/nbyname.Rd | 2 man/nparam.Rd | 2 man/overlayenvelope.Rd | 4 man/pairstrace_jags.Rd | 4 man/plotRhats.Rd | 4 man/plot_postpred.Rd |only man/plotcor_jags.Rd | 2 man/plotdens.Rd | 2 man/qq_postpred.Rd | 4 man/trace_df.Rd | 2 man/trace_jags.Rd | 2 man/trace_line.Rd | 2 man/tracedens_jags.Rd | 2 man/traceworstRhat.Rd | 4 man/ts_postpred.Rd | 11 tests/testthat/test_jagshelper.R | 72 + vignettes/jagshelper-vignette.Rmd | 45 46 files changed, 359 insertions(+), 2091 deletions(-)
Title: Record 'HTTP' Calls to Disk
Description: Record test suite 'HTTP' requests and replays them during
future runs. A port of the Ruby gem of the same name
(<https://github.com/vcr/vcr/>). Works by hooking into the 'webmockr'
R package for matching 'HTTP' requests by various rules ('HTTP' method,
'URL', query parameters, headers, body, etc.), and then caching
real 'HTTP' responses on disk in 'cassettes'. Subsequent 'HTTP' requests
matching any previous requests in the same 'cassette' use a cached
'HTTP' response.
Author: Scott Chamberlain [aut, cre] ,
Aaron Wolen [aut] ,
Maelle Salmon [aut] ,
Daniel Possenriede [aut] ,
rOpenSci [fnd]
Maintainer: Scott Chamberlain <sckott@protonmail.com>
Diff between vcr versions 1.2.2 dated 2023-06-25 and 1.6.0 dated 2024-07-23
vcr-1.2.2/vcr/man/vcr.Rd |only vcr-1.6.0/vcr/DESCRIPTION | 19 +- vcr-1.6.0/vcr/MD5 | 118 +++++++-------- vcr-1.6.0/vcr/NAMESPACE | 3 vcr-1.6.0/vcr/NEWS.md | 20 ++ vcr-1.6.0/vcr/R/cassette_class.R | 35 +++- vcr-1.6.0/vcr/R/errors.R | 5 vcr-1.6.0/vcr/R/http_interaction.R | 2 vcr-1.6.0/vcr/R/http_interaction_list.R | 2 vcr-1.6.0/vcr/R/http_interactions.R | 2 vcr-1.6.0/vcr/R/insert_cassette.R | 2 vcr-1.6.0/vcr/R/lightswitch.R | 4 vcr-1.6.0/vcr/R/request_class.R | 15 + vcr-1.6.0/vcr/R/request_handler-crul.R | 2 vcr-1.6.0/vcr/R/request_handler-httr.R | 2 vcr-1.6.0/vcr/R/request_handler-httr2.R |only vcr-1.6.0/vcr/R/request_response.R | 2 vcr-1.6.0/vcr/R/serialize_to_httr2.R |only vcr-1.6.0/vcr/R/use_cassette.R | 6 vcr-1.6.0/vcr/R/vcr-package.R | 26 +-- vcr-1.6.0/vcr/R/vcr_setup.R | 2 vcr-1.6.0/vcr/build/vignette.rds |binary vcr-1.6.0/vcr/inst/doc/cassette-manual-editing.R | 2 vcr-1.6.0/vcr/inst/doc/cassette-manual-editing.html | 16 +- vcr-1.6.0/vcr/inst/doc/configuration.html | 23 +- vcr-1.6.0/vcr/inst/doc/debugging.R | 2 vcr-1.6.0/vcr/inst/doc/debugging.html | 4 vcr-1.6.0/vcr/inst/doc/design.R | 2 vcr-1.6.0/vcr/inst/doc/design.html | 11 - vcr-1.6.0/vcr/inst/doc/internals.R | 2 vcr-1.6.0/vcr/inst/doc/internals.html | 19 +- vcr-1.6.0/vcr/inst/doc/lightswitch.R | 4 vcr-1.6.0/vcr/inst/doc/lightswitch.html | 4 vcr-1.6.0/vcr/inst/doc/record-modes.html | 4 vcr-1.6.0/vcr/inst/doc/request_matching.html | 4 vcr-1.6.0/vcr/inst/doc/vcr.R | 8 - vcr-1.6.0/vcr/inst/doc/vcr.Rmd | 2 vcr-1.6.0/vcr/inst/doc/vcr.html | 8 - vcr-1.6.0/vcr/inst/doc/write-to-disk.html | 10 - vcr-1.6.0/vcr/man/Cassette.Rd | 8 - vcr-1.6.0/vcr/man/HTTPInteraction.Rd | 2 vcr-1.6.0/vcr/man/HTTPInteractionList.Rd | 2 vcr-1.6.0/vcr/man/Request.Rd | 24 ++- vcr-1.6.0/vcr/man/RequestHandlerCrul.Rd | 2 vcr-1.6.0/vcr/man/RequestHandlerHttr.Rd | 2 vcr-1.6.0/vcr/man/RequestHandlerHttr2.Rd |only vcr-1.6.0/vcr/man/UnhandledHTTPRequestError.Rd | 4 vcr-1.6.0/vcr/man/http_interactions.Rd | 2 vcr-1.6.0/vcr/man/insert_cassette.Rd | 2 vcr-1.6.0/vcr/man/lightswitch.Rd | 4 vcr-1.6.0/vcr/man/request_response.Rd | 2 vcr-1.6.0/vcr/man/rmdhunks/cassette-editing-vignette.Rmd | 12 - vcr-1.6.0/vcr/man/rmdhunks/configuration-vignette.Rmd | 8 - vcr-1.6.0/vcr/man/rmdhunks/internals-vignette.Rmd | 2 vcr-1.6.0/vcr/man/rmdhunks/vcr-design.Rmd | 10 - vcr-1.6.0/vcr/man/use_cassette.Rd | 6 vcr-1.6.0/vcr/man/vcr-package.Rd |only vcr-1.6.0/vcr/tests/testthat/helper-vcr.R | 36 +++- vcr-1.6.0/vcr/tests/testthat/httr2_obj.rda |only vcr-1.6.0/vcr/tests/testthat/test-ause_cassette.R | 8 - vcr-1.6.0/vcr/tests/testthat/test-httr2.R |only vcr-1.6.0/vcr/tests/testthat/test-localhost_port.R |only vcr-1.6.0/vcr/tests/testthat/test-request_summary.R | 8 - vcr-1.6.0/vcr/vignettes/vcr.Rmd | 2 64 files changed, 312 insertions(+), 226 deletions(-)
Title: Global Surface Summary of the Day ('GSOD') Weather Data Client
Description: Provides automated downloading, parsing, cleaning, unit
conversion and formatting of Global Surface Summary of the Day
('GSOD') weather data from the from the USA National Centers for
Environmental Information ('NCEI'). Units are converted from from
United States Customary System ('USCS') units to International System
of Units ('SI'). Stations may be individually checked for number of
missing days defined by the user, where stations with too many missing
observations are omitted. Only stations with valid reported latitude
and longitude values are permitted in the final data. Additional
useful elements, saturation vapour pressure ('es'), actual vapour
pressure ('ea') and relative humidity ('RH') are calculated from the
original data using the improved August-Roche-Magnus approximation
(Alduchov & Eskridge 1996) and included in the final data set. The
resulting metadata include station identification information,
country, state, latitude, longitude, elevation, weather observatio [...truncated...]
Author: Adam H. Sparks [aut, cre] ,
Tomislav Hengl [aut] ,
Andrew Nelson [aut] ,
Hugh Parsonage [cph, ctb] ,
Taras Kaduk [ctb] ,
Gwenael Giboire [ctb] ,
Lukasz Pawlik [ctb] ,
Ross Darnell [ctb] ,
Tyler Widdison [ctb] ` did not
return stations in order of nea [...truncated...]
Maintainer: Adam H. Sparks <adamhsparks@gmail.com>
Diff between GSODR versions 4.1.0 dated 2024-07-21 and 4.1.1 dated 2024-07-23
DESCRIPTION | 6 - MD5 | 16 ++-- NEWS.md | 13 +++ R/globals.R | 1 R/process_csv.R | 2 README.md | 14 ++-- inst/doc/GSODR.Rmd | 180 ++++++++++++++++++++++++++++------------------------ inst/doc/GSODR.html | 180 ++++++++++++++++++++++++++++------------------------ vignettes/GSODR.Rmd | 180 ++++++++++++++++++++++++++++------------------------ 9 files changed, 332 insertions(+), 260 deletions(-)
Title: Package Documentation Websites with 'Quarto', 'Docsify',
'Docute', or 'MkDocs'
Description: This is a simple and powerful package to create, render, preview,
and deploy documentation websites for 'R' packages. It is a lightweight and
flexible alternative to 'pkgdown', with support for many documentation
generators, including 'Quarto', 'Docute', 'Docsify', and 'MkDocs'.
Author: Etienne Bacher [aut, cre, cph],
Vincent Arel-Bundock [aut]
Maintainer: Etienne Bacher <etienne.bacher@protonmail.com>
Diff between altdoc versions 0.3.0 dated 2024-02-21 and 0.4.0 dated 2024-07-23
DESCRIPTION | 18 LICENSE | 4 MD5 | 176 - NAMESPACE | 12 NEWS.md | 264 +- R/altdoc_variables.R | 108 R/check.R | 110 R/freeze.R | 128 - R/import_man.R | 430 +-- R/import_misc.R | 301 +- R/import_readme.R | 212 - R/import_vignettes.R | 476 ++-- R/preview_docs.R | 58 R/qmd2md.R | 99 R/rd2qmd.R | 203 - R/render_docs.R | 228 +- R/settings.R | 122 - R/settings_docsify.R | 176 - R/settings_docute.R | 186 - R/settings_mkdocs.R | 334 +- R/settings_quarto_website.R | 271 +- R/setup_docs.R | 369 +-- R/setup_github_actions.R | 95 R/utils.R | 384 +-- README.md | 473 ++-- build/vignette.rds |binary inst/WORDLIST | 71 inst/doc/get-started.R | 6 inst/doc/get-started.Rmd | 390 +-- inst/doc/get-started.html | 1132 +++++----- inst/docsify/docsify.html | 90 inst/docsify/docsify.md | 18 inst/docute/docute.html | 104 inst/gha/altdoc.yaml | 146 - inst/mkdocs/mkdocs.yml | 80 inst/preamble/preamble_man_qmd.yml | 12 inst/preamble/preamble_vignettes_qmd.yml | 12 inst/preamble/preamble_vignettes_rmd.yml | 8 inst/quarto_website/quarto_website.yml | 77 man/preview_docs.Rd | 62 man/render_docs.Rd | 218 + man/setup_docs.Rd | 168 - man/setup_github_actions.Rd | 50 tests/spelling.R | 12 tests/testthat.R | 8 tests/testthat/_snaps/docsify/render_docs.md | 153 + tests/testthat/_snaps/docute/render_docs.md | 133 + tests/testthat/_snaps/mkdocs/render_docs.md | 43 tests/testthat/examples/examples-man/between.Rd | 36 tests/testthat/examples/examples-man/between.md | 80 tests/testthat/examples/examples-man/is-internal.Rd | 36 tests/testthat/examples/examples-man/should-fail.Rd | 34 tests/testthat/examples/examples-qmd/with-preamble.qmd | 26 tests/testthat/examples/examples-qmd/without-preamble.qmd | 16 tests/testthat/examples/examples-vignettes/basic.Rmd | 36 tests/testthat/examples/examples-vignettes/several-outputs.Rmd | 48 tests/testthat/examples/examples-vignettes/with-figure.Rmd | 50 tests/testthat/examples/examples-yaml/basic.Rmd | 20 tests/testthat/examples/examples-yaml/options.Rmd | 28 tests/testthat/examples/examples-yaml/several-outputs.Rmd | 32 tests/testthat/examples/testpkg.altdoc/DESCRIPTION | 32 tests/testthat/examples/testpkg.altdoc/NAMESPACE | 12 tests/testthat/examples/testpkg.altdoc/NEWS.md | 18 tests/testthat/examples/testpkg.altdoc/R/examplesIf_false.R |only tests/testthat/examples/testpkg.altdoc/R/examplesIf_true.R |only tests/testthat/examples/testpkg.altdoc/R/hello_base.R | 40 tests/testthat/examples/testpkg.altdoc/R/hello_r6.R | 60 tests/testthat/examples/testpkg.altdoc/README.Rmd | 82 tests/testthat/examples/testpkg.altdoc/README.md | 72 tests/testthat/examples/testpkg.altdoc/man/examplesIf_false.Rd |only tests/testthat/examples/testpkg.altdoc/man/examplesIf_true.Rd |only tests/testthat/examples/testpkg.altdoc/man/hello_base.Rd | 65 tests/testthat/examples/testpkg.altdoc/man/hello_r6.Rd | 178 - tests/testthat/examples/testpkg.altdoc/vignettes/test.Rmd | 42 tests/testthat/helper.R | 174 - tests/testthat/test-check_md_structure.R | 60 tests/testthat/test-freeze.R | 46 tests/testthat/test-import_man.R | 110 tests/testthat/test-parallel.R | 18 tests/testthat/test-preview_docs.R | 26 tests/testthat/test-qmd2md.R | 72 tests/testthat/test-rd2qmd.R | 62 tests/testthat/test-render_docs.R | 350 +-- tests/testthat/test-settings.R | 34 tests/testthat/test-setup_docs.R | 124 - tests/testthat/test-setup_github_actions.R | 62 tests/testthat/test-update.R | 240 +- tests/testthat/test-utils.R | 116 - vignettes/customize.qmd | 546 ++-- vignettes/deploy.qmd | 176 - vignettes/get-started.Rmd | 390 +-- 91 files changed, 6158 insertions(+), 5721 deletions(-)
Title: Young Tableaux
Description: Deals with Young tableaux (field of combinatorics). For standard
Young tabeaux, performs enumeration, counting, random generation, the
Robinson-Schensted correspondence, and conversion to and from paths on
the Young lattice. Also performs enumeration and counting of
semistandard Young tableaux, enumeration of skew semistandard Young
tableaux, enumeration of Gelfand-Tsetlin patterns, and computation of
Kostka numbers.
Author: Stephane Laurent
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between syt versions 0.4.0 dated 2024-04-23 and 0.5.0 dated 2024-07-23
DESCRIPTION | 11 - MD5 | 106 ++++++---- NAMESPACE | 10 + NEWS.md | 28 ++ R/GelfandTsetlin.R |only R/Kostka.R | 280 ++++++++++++++++++++++++++++- R/RSK.R | 4 R/enumeration.R | 26 +- R/hooks.R | 14 - R/internal.R | 87 ++++++++- R/isSYT.R | 4 R/plancherel.R | 8 R/randomsyt.R | 2 R/skewGelfandTsetlin.R |only R/skewKostkaNumbers.R |only R/skewTableaux.R | 38 +++ R/ssyt.R | 25 ++ R/syt2matrix.R | 10 - R/syt2path.R | 8 R/tableaux.R | 4 man/GelfandTsetlinPatterns.Rd |only man/KostkaNumber.Rd | 76 ++++--- man/KostkaNumbers.Rd |only man/KostkaNumbersWithGivenLambda.Rd |only man/KostkaNumbersWithGivenMu.Rd |only man/RS.Rd | 2 man/all_ssSkewTableaux.Rd | 60 +++--- man/all_ssytx.Rd | 55 +++-- man/all_sytx.Rd | 2 man/count_ssytx.Rd | 53 ++--- man/count_sytx.Rd | 6 man/dualSkewTableau.Rd | 44 ++-- man/firstsyt.Rd | 2 man/gprocess2syt.Rd | 2 man/hooklengths.Rd | 4 man/hooks.Rd | 4 man/isSSYT.Rd | 2 man/isSYT.Rd | 2 man/isSemistandardSkewTableau.Rd | 42 ++-- man/isSkewTableau.Rd | 42 ++-- man/isStandardSkewTableau.Rd | 42 ++-- man/matrix2syt.Rd | 2 man/nextsyt.Rd | 4 man/prettyGT.Rd |only man/prettySkewTableau.Rd | 42 ++-- man/prettyTableau.Rd | 42 ++-- man/rgprocess.Rd | 4 man/rsyt.Rd | 2 man/skewGelfandTsetlinPatterns.Rd |only man/skewKostkaNumbers.Rd |only man/skewTableauxWithGivenShapeAndWeight.Rd |only man/ssytx_withGivenShapeAndWeight.Rd |only man/syt2gprocess.Rd | 6 man/syt2matrix.Rd | 4 man/tableau2matrix.Rd | 4 man/tableauShape.Rd | 4 tests/testthat/helper-00.R |only tests/testthat/test-Gelfand-Tsetlin.R |only tests/testthat/test-Kostka.R | 34 +++ tests/testthat/test-skewTableaux.R | 27 ++ tests/testthat/test-ssyt.R | 27 ++ 61 files changed, 941 insertions(+), 366 deletions(-)
Title: Read, Write and Edit xlsx Files
Description: Simplifies the creation of Excel .xlsx files by providing a
high level interface to writing, styling and editing worksheets.
Through the use of 'Rcpp', read/write times are comparable to the
'xlsx' and 'XLConnect' packages with the added benefit of removing the
dependency on Java.
Author: Philipp Schauberger [aut],
Alexander Walker [aut],
Luca Braglia [ctb],
Joshua Sturm [ctb],
Jan Marvin Garbuszus [ctb, cre],
Jordan Mark Barbone [ctb] ,
David Zimmermann [ctb]
Maintainer: Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>
Diff between openxlsx versions 4.2.6 dated 2024-07-23 and 4.2.6.1 dated 2024-07-23
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- inst/doc/Formatting.html | 4 ++-- inst/doc/Introduction.html | 4 ++-- tests/testthat/test-writeData.R | 7 ++----- 5 files changed, 15 insertions(+), 18 deletions(-)
Title: Estimation in Difference-in-Difference Designs with Multiple
Groups and Periods
Description: Estimation of event-study Difference-in-Difference (DID) estimators in designs with multiple groups and periods, and with a potentially non-binary treatment that may increase or decrease multiple times.
Author: Diego Ciccia [aut, cre],
Felix Knau [aut],
Melitine Malezieux [aut],
Doulo Sow [aut],
Clement de Chaisemartin [aut]
Maintainer: Diego Ciccia <diego.ciccia@kellogg.northwestern.edu>
Diff between DIDmultiplegtDYN versions 1.0.13 dated 2024-06-28 and 1.0.15 dated 2024-07-23
DESCRIPTION | 12 ++--- MD5 | 14 +++--- NEWS.md | 4 + R/did_multiplegt_dyn.R | 2 R/did_multiplegt_dyn_by_check.R | 2 R/did_multiplegt_dyn_design.R | 2 R/did_multiplegt_main.R | 84 +++++++++++++++++++++++++++++++++++++--- R/print.R | 4 + 8 files changed, 103 insertions(+), 21 deletions(-)
More information about DIDmultiplegtDYN at CRAN
Permanent link
Title: Teaching Hydrological Modelling with the GR Rainfall-Runoff
Models ('Shiny' Interface Included)
Description: Add-on package to the 'airGR' package that simplifies its use and is aimed at being used for teaching hydrology. The package provides 1) three functions that allow to complete very simply a hydrological modelling exercise 2) plotting functions to help students to explore observed data and to interpret the results of calibration and simulation of the GR ('Génie rural') models 3) a 'Shiny' graphical interface that allows for displaying the impact of model parameters on hydrographs and models internal variables.
Author: Olivier Delaigue [aut, cre] ,
Laurent Coron [aut] ,
Pierre Brigode [aut] ,
Guillaume Thirel [aut]
Maintainer: Olivier Delaigue <airGR@inrae.fr>
Diff between airGRteaching versions 0.3.2 dated 2023-07-12 and 0.3.3 dated 2024-07-23
DESCRIPTION | 8 MD5 | 93 +- NAMESPACE | 10 NEWS.md | 19 R/ShinyGR.R | 4 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 42 - inst/ShinyGR/server.R | 48 - inst/ShinyGR/ui.R | 4 inst/ShinyGR/www/tab_about.rmd |only inst/ShinyGR/www/tab_authors.rmd |only inst/ShinyGR/www/tab_fun.rmd |only inst/doc/get_started.R | 30 inst/doc/get_started.html | 145 ++-- inst/doc/v00_teaching_hydrology.R | 68 +- inst/doc/v00_teaching_hydrology.html | 1028 +++++++++++++++---------------- inst/doc/v00_teaching_hydrology.rmd | 48 - inst/doc/v01_EN_flow_reconstruction.R | 54 - inst/doc/v01_EN_flow_reconstruction.html | 350 +++++----- inst/doc/v01_EN_flow_reconstruction.rmd | 14 inst/doc/v01_FR_flow_reconstruction.R | 54 - inst/doc/v01_FR_flow_reconstruction.html | 332 ++++------ inst/doc/v01_FR_flow_reconstruction.rmd | 6 inst/doc/v02_EN_flow_forecasting.R | 126 +-- inst/doc/v02_EN_flow_forecasting.html | 532 +++++++--------- inst/doc/v02_EN_flow_forecasting.rmd | 22 inst/doc/v02_FR_flow_forecasting.R | 126 +-- inst/doc/v02_FR_flow_forecasting.html | 516 +++++++-------- inst/doc/v02_FR_flow_forecasting.rmd | 12 inst/doc/v03_EN_impact_CC_flow.R | 58 - inst/doc/v03_EN_impact_CC_flow.html | 488 +++++++------- inst/doc/v03_EN_impact_CC_flow.rmd | 20 inst/doc/v03_FR_impact_CC_flow.R | 58 - inst/doc/v03_FR_impact_CC_flow.html | 478 +++++++------- inst/doc/v03_FR_impact_CC_flow.rmd | 14 man/ShinyGR.Rd | 4 man/SimGR.Rd | 2 man/airGRteaching.Rd | 2 tests/testthat/test-plot.R | 2 vignettes/V00_airGRteaching_ref.bib | 3 vignettes/v00_teaching_hydrology.rmd | 48 - vignettes/v01_EN_flow_reconstruction.rmd | 14 vignettes/v01_FR_flow_reconstruction.rmd | 6 vignettes/v02_EN_flow_forecasting.rmd | 22 vignettes/v02_FR_flow_forecasting.rmd | 12 vignettes/v03_EN_impact_CC_flow.rmd | 20 vignettes/v03_FR_impact_CC_flow.rmd | 14 49 files changed, 2462 insertions(+), 2496 deletions(-)
Title: Tidy Finance Helper Functions
Description: Helper functions for empirical research in financial
economics, addressing a variety of topics covered in Scheuch, Voigt,
and Weiss (2023) <doi:10.1201/b23237>. The package is designed to
provide shortcuts for issues extensively discussed in the book,
facilitating easier application of its concepts. For more information
and resources related to the book, visit
<https://www.tidy-finance.org/r/index.html>.
Author: Christoph Scheuch [aut, cre] ,
Stefan Voigt [aut] ,
Patrick Weiss [aut]
Maintainer: Christoph Scheuch <christoph.scheuch@gmail.com>
Diff between tidyfinance versions 0.2.1 dated 2024-07-03 and 0.3.0 dated 2024-07-23
DESCRIPTION | 55 ++-- MD5 | 119 +++++----- NAMESPACE | 21 - NEWS.md | 23 ++ R/assign_portfolio.R | 13 - R/check_if_package_installed.R | 6 R/check_supported_type.R | 6 R/create_summary_statistics.R | 38 +-- R/create_wrds_dummy_database.R | 15 - R/disconnect_connection.R | 7 R/download_data.R | 16 - R/download_data_factors.R | 120 ++++++---- R/download_data_macro_predictors.R | 46 ++-- R/download_data_stocks.R |only R/download_data_wrds.R | 13 - R/download_data_wrds_ccm_links.R | 15 - R/download_data_wrds_clean_trace.R | 70 +++--- R/download_data_wrds_compustat.R | 94 ++++++-- R/download_data_wrds_crsp.R | 184 +++++++++------- R/download_data_wrds_fisd.R | 32 +- R/estimate_model.R | 13 - R/get_wrds_connection.R | 25 -- R/global_variables.R | 5 R/list_supported_types.R | 378 ++++++++++++++++++++++++++++++++-- R/list_tidy_finance_chapters.R | 11 R/open_tidy_finance_website.R | 13 - R/set_wrds_credentials.R | 5 R/tidyfinance-package.R | 5 R/trim.R | 7 R/winsorize.R | 11 README.md | 7 build/vignette.rds |binary inst/doc/dates-in-tidyfinance.R |only inst/doc/dates-in-tidyfinance.Rmd |only inst/doc/dates-in-tidyfinance.html |only inst/doc/using-tidyfinance.R | 17 - inst/doc/using-tidyfinance.Rmd | 21 - inst/doc/using-tidyfinance.html | 126 +++++------ man/assign_portfolio.Rd | 1 man/create_summary_statistics.Rd | 2 man/create_wrds_dummy_database.Rd | 3 man/download_data.Rd | 12 - man/download_data_factors.Rd | 4 man/download_data_factors_ff.Rd | 20 + man/download_data_factors_q.Rd | 8 man/download_data_macro_predictors.Rd | 9 man/download_data_stocks.Rd |only man/download_data_stocks_yf.Rd |only man/download_data_wrds.Rd | 9 man/download_data_wrds_ccm_links.Rd | 1 man/download_data_wrds_clean_trace.Rd | 9 man/download_data_wrds_compustat.Rd | 18 - man/download_data_wrds_crsp.Rd | 7 man/download_data_wrds_fisd.Rd | 10 man/estimate_model.Rd | 1 man/get_wrds_connection.Rd | 1 man/list_supported_types.Rd | 1 man/list_supported_types_ff_legacy.Rd |only man/list_supported_types_stocks.Rd |only man/list_tidy_finance_chapters.Rd | 1 man/open_tidy_finance_website.Rd | 5 man/trim.Rd | 1 man/winsorize.Rd | 1 vignettes/dates-in-tidyfinance.Rmd |only vignettes/using-tidyfinance.Rmd | 21 - 65 files changed, 1051 insertions(+), 631 deletions(-)
Title: Provides Progress Bars in 'knitr'
Description: Provides a progress bar similar to 'dplyr' that can write progress out to a
variety of locations, including stdout(), stderr(), or from file(). Useful when using 'knitr' or 'rmarkdown',
and you still want to see progress of calculations in the terminal.
Author: Robert M Flight [aut, cre],
Hadley Wickham [ctb] ,
Romain Francois [ctb] ,
Lionel Henry [ctb] ,
Kirill Mueller [ctb] ,
RStudio [cph]
Maintainer: Robert M Flight <rflight79@gmail.com>
Diff between knitrProgressBar versions 1.1.0 dated 2018-02-19 and 1.1.1 dated 2024-07-23
DESCRIPTION | 11 MD5 | 22 - R/progress.R | 2 README.md | 95 +++-- build/vignette.rds |binary inst/doc/example_progress_bars.R | 18 inst/doc/example_progress_bars.html | 637 +++++++++++++++++++++-------------- inst/doc/multiprocessing.R | 10 inst/doc/multiprocessing.html | 557 +++++++++++++++++++----------- man/progress_estimated.Rd | 7 man/watch_progress_mp.Rd | 8 tests/testthat/test-decision-logic.R | 35 - 12 files changed, 864 insertions(+), 538 deletions(-)
More information about knitrProgressBar at CRAN
Permanent link
Title: Discovery, Retrieval, and Analysis of Water Isotope Data
Description: The wiDB...() functions provide an interface to the public API
of the wiDB <https://github.com/SPATIAL-Lab/isoWater/blob/master/Protocol.md>:
build, check and submit queries, and receive and
unpack responses. Data analysis functions support Bayesian
inference of the source and source isotope composition of water
samples that may have experienced evaporation. Algorithms
adapted from Bowen et al. (2018, <doi:10.1007/s00442-018-4192-5>).
Author: Gabe Bowen [aut, cre]
Maintainer: Gabe Bowen <gabe.bowen@utah.edu>
Diff between isoWater versions 1.1.2 dated 2023-08-18 and 1.2.0 dated 2024-07-23
DESCRIPTION | 8 +- MD5 | 28 +++---- NEWS.md | 4 + R/constructors.R | 23 +++++ R/sysdata.rda |binary R/watercomp.R | 78 +++++++++++++------ build/partial.rdb |binary build/vignette.rds |binary inst/doc/isoWater.R | 2 inst/doc/isoWater.Rmd | 2 inst/doc/isoWater.html | 196 ++++++++++++++++++++++++------------------------- man/iso.Rd | 10 +- man/mixSource.Rd | 9 +- man/mwlSource.Rd | 9 ++ vignettes/isoWater.Rmd | 2 15 files changed, 216 insertions(+), 155 deletions(-)
Title: Joint Estimation of Latent Groups and Group-Specific
Coefficients in Panel Data Models
Description: Latent group structures are a common challenge in panel data analysis. Disregarding group-level heterogeneity can introduce bias. Conversely, estimating individual coefficients for each cross-sectional unit is inefficient and may lead to high uncertainty.
This package addresses the issue of unobservable group structures by implementing the pairwise adaptive group fused Lasso (PAGFL) by Mehrabani (2023) <doi:10.1016/j.jeconom.2022.12.002>. PAGFL identifies latent group structures and group-specific coefficients in a single step.
On top of that, we extend the PAGFL to time-varying coefficient functions.
Author: Paul Haimerl [aut, cre] ,
Stephan Smeekes [ctb] ,
Ines Wilms [ctb] ,
Ali Mehrabani [ctb]
Maintainer: Paul Haimerl <p.haimerl@student.maastrichtuniversity.nl>
Diff between PAGFL versions 1.1.0 dated 2024-06-08 and 1.1.1 dated 2024-07-23
PAGFL-1.1.0/PAGFL/tests/testthat/test-results.R |only PAGFL-1.1.1/PAGFL/DESCRIPTION | 6 PAGFL-1.1.1/PAGFL/MD5 | 61 - PAGFL-1.1.1/PAGFL/NAMESPACE | 18 PAGFL-1.1.1/PAGFL/NEWS.md | 9 PAGFL-1.1.1/PAGFL/R/RcppExports.R | 12 PAGFL-1.1.1/PAGFL/R/checks.R | 55 - PAGFL-1.1.1/PAGFL/R/grouped_plm.R |only PAGFL-1.1.1/PAGFL/R/grouped_tv_plm.R |only PAGFL-1.1.1/PAGFL/R/helper.R |only PAGFL-1.1.1/PAGFL/R/pagfl.R | 100 +- PAGFL-1.1.1/PAGFL/R/pagfl_tv.R | 157 +-- PAGFL-1.1.1/PAGFL/R/s3_methods.R | 7 PAGFL-1.1.1/PAGFL/R/s3_methods_grouped_plm.R |only PAGFL-1.1.1/PAGFL/R/s3_methods_grouped_tv_plm.R |only PAGFL-1.1.1/PAGFL/R/s3_methods_tv.R | 4 PAGFL-1.1.1/PAGFL/R/sim.R | 33 PAGFL-1.1.1/PAGFL/R/sim_tv.R | 45 - PAGFL-1.1.1/PAGFL/README.md | 84 +- PAGFL-1.1.1/PAGFL/man/figures/README-unnamed-chunk-8-1.png |binary PAGFL-1.1.1/PAGFL/man/figures/README-unnamed-chunk-9-1.png |binary PAGFL-1.1.1/PAGFL/man/grouped_plm.Rd |only PAGFL-1.1.1/PAGFL/man/grouped_tv_plm.Rd |only PAGFL-1.1.1/PAGFL/man/pagfl.Rd | 65 - PAGFL-1.1.1/PAGFL/man/sim_DGP.Rd | 27 PAGFL-1.1.1/PAGFL/man/sim_tv_DGP.Rd | 24 PAGFL-1.1.1/PAGFL/man/tv_pagfl.Rd | 72 - PAGFL-1.1.1/PAGFL/src/PAGFL-package.cpp | 402 ++++++---- PAGFL-1.1.1/PAGFL/src/RcppExports.cpp | 53 + PAGFL-1.1.1/PAGFL/tests/testthat/_snaps/methods.md | 226 +++++ PAGFL-1.1.1/PAGFL/tests/testthat/fixtures/pagfl_pls_sim_smallNk.rds |only PAGFL-1.1.1/PAGFL/tests/testthat/fixtures/test_helper.R | 49 - PAGFL-1.1.1/PAGFL/tests/testthat/test-inputs.R | 69 + PAGFL-1.1.1/PAGFL/tests/testthat/test-methods.R | 112 ++ PAGFL-1.1.1/PAGFL/tests/testthat/test-oracle.R |only PAGFL-1.1.1/PAGFL/tests/testthat/test-pagfl_results.R |only PAGFL-1.1.1/PAGFL/tests/testthat/test-sim.R | 46 - 37 files changed, 1148 insertions(+), 588 deletions(-)
Title: Enable the Use of 'metacore' to Help Create and Check Dataset
Description: Uses the metadata information stored in 'metacore' objects to check and build metadata associated columns.
Author: Christina Fillmore [aut, cre] ,
Mike Stackhouse [aut] ,
Jana Stoilova [aut],
Tamara Senior [aut],
GlaxoSmithKline LLC [cph, fnd],
F. Hoffmann-La Roche AG [cph, fnd],
Atorus Research LLC [cph, fnd]
Maintainer: Christina Fillmore <christina.e.fillmore@gsk.com>
Diff between metatools versions 0.1.5 dated 2023-03-13 and 0.1.6 dated 2024-07-23
DESCRIPTION | 25 +++++-- MD5 | 29 ++++---- NAMESPACE | 7 ++ NEWS.md | 12 ++- R/build.R | 38 +++++++++-- R/checks.R | 141 ++++++++++++++++++++++++++++++++++++++----- R/supp.R | 126 +++++++++++++++++++++++++++++++++----- inst/WORDLIST |only man/build_from_derived.Rd | 8 +- man/check_ct_data.Rd | 22 +++++- man/check_unique_keys.Rd |only man/check_variables.Rd | 4 - man/get_bad_ct.Rd | 13 +++ tests/spelling.R |only tests/testthat/test-build.R | 34 +++++++++- tests/testthat/test-checks.R | 44 +++++++++++++ tests/testthat/test-supp.R | 50 +++++++++++---- 17 files changed, 466 insertions(+), 87 deletions(-)
Title: Functions to Calculate Common Laterality Statistics in
Primatology
Description: Calculates and plots Handedness index (HI), absolute HI, mean HI and z-score which are commonly used indexes for the study of hand preference (laterality) in non-human primates.
Author: Borel A., Pouydebat E., Reghem E.
Maintainer: Antony Borel <antony.borel@gmail.com>
Diff between Laterality versions 0.9.4 dated 2022-06-06 and 0.9.5 dated 2024-07-23
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/Laterality-package.Rd | 8 -------- 3 files changed, 6 insertions(+), 14 deletions(-)
Title: Yatchew (1997), De Chaisemartin & D'Haultfoeuille (2024)
Linearity Test
Description: Test of linearity originally proposed by Yatchew (1997) <doi:10.1016/S0165-1765(97)00218-8> and improved by de Chaisemartin & D'Haultfoeuille (2024) <doi:10.2139/ssrn.4284811> to be robust under heteroskedasticity.
Author: Diego Ciccia [aut, cre],
Felix Knau [aut],
Doulo Sow [aut],
Clement de Chaisemartin [aut],
Xavier D'Haultfoeuille [aut]
Maintainer: Diego Ciccia <diego.ciccia@kellogg.northwestern.edu>
Diff between YatchewTest versions 1.1.0 dated 2024-06-11 and 1.1.1 dated 2024-07-23
DESCRIPTION | 12 ++++++------ MD5 | 2 +- 2 files changed, 7 insertions(+), 7 deletions(-)
Title: Generalised Additive Point Process Models
Description: Methods for fitting point processes with parameters of generalised additive
model (GAM) form are provided. For an introduction to point processes see Cox, D.R &
Isham, V. (Point Processes, 1980, CRC Press), GAMs see Wood, S.N. (2017)
<doi:10.1201/9781315370279>, and the fitting approach see Wood, S.N., Pya, N. &
Safken, B. (2016) <doi:10.1080/01621459.2016.1180986>.
Author: Ben Youngman [aut, cre], Theo Economou [aut]
Maintainer: Ben Youngman <b.youngman@exeter.ac.uk>
Diff between ppgam versions 1.0.1 dated 2020-04-19 and 1.0.2 dated 2024-07-23
DESCRIPTION | 10 ++-- MD5 | 23 ++++++---- NAMESPACE | 8 +++ NEWS.md | 8 +++ R/data.R | 2 R/nohelp.R | 114 ++++++++++++++++++++++++++++++++++++++------------ R/ppgam.R | 25 +++++++--- R/s3.R |only man/coef.ppgam.Rd |only man/fitted.ppgam.Rd |only man/plot.ppgam.Rd |only man/ppgam.Rd | 13 ++++- man/predict.ppgam.Rd |only man/print.ppgam.Rd |only man/simulate.ppgam.Rd |only man/windstorm.Rd | 2 16 files changed, 152 insertions(+), 53 deletions(-)
Title: Difference-in-Differences in Heterogeneous Adoption Designs with
Quasi Stayers
Description: Estimation of Difference-in-Differences (DiD) estimators from de Chaisemartin and D'Haultfoeuille (2024) <doi:10.2139/ssrn.4284811> in Heterogeneous Adoption Designs with no stayers but with quasi stayers.
Author: Diego Ciccia [aut, cre],
Felix Knau [aut],
Doulo Sow [aut],
Clement de Chaisemartin [aut],
Xavier D'Haultfoeuille [aut]
Maintainer: Diego Ciccia <diego.ciccia@kellogg.northwestern.edu>
Diff between DIDHAD versions 1.0.0 dated 2024-06-18 and 1.0.1 dated 2024-07-23
DESCRIPTION | 12 +++--- MD5 | 10 ++--- R/did_had.R | 7 +++ R/did_had_est.R | 10 ++++- R/did_het_adoption_main.R | 86 +++++++++++++++++++++++++++++++++++++++++----- man/did_had.Rd | 6 +++ 6 files changed, 109 insertions(+), 22 deletions(-)
Title: Flexible Framework for Developing Spatial Interaction Models
Description: Develop spatial interaction models (SIMs). SIMs predict the
amount of interaction, for example number of trips per day, between
geographic entities representing trip origins and destinations.
Contains functions for creating origin-destination datasets
from geographic input datasets and calculating movement between
origin-destination pairs with constrained, production-constrained,
and attraction-constrained models (Wilson 1979) <doi:10.1068/a030001>.
Author: Robin Lovelace [aut, cre] ,
Jakub Nowosad [aut]
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between simodels versions 0.0.5 dated 2022-08-31 and 0.1.0 dated 2024-07-23
simodels-0.0.5/simodels/data/od_aus.rda |only simodels-0.0.5/simodels/data/zones_aus.rda |only simodels-0.0.5/simodels/man/od_aus.Rd |only simodels-0.0.5/simodels/man/zones_aus.Rd |only simodels-0.1.0/simodels/DESCRIPTION | 6 simodels-0.1.0/simodels/MD5 | 32 simodels-0.1.0/simodels/NEWS.md | 6 simodels-0.1.0/simodels/R/si_model.R | 22 simodels-0.1.0/simodels/README.md | 33 simodels-0.1.0/simodels/build/partial.rdb |binary simodels-0.1.0/simodels/build/vignette.rds |binary simodels-0.1.0/simodels/inst/doc/simodels.R | 215 simodels-0.1.0/simodels/inst/doc/simodels.Rmd | 5 simodels-0.1.0/simodels/inst/doc/simodels.html | 5293 ------------ simodels-0.1.0/simodels/inst/doc/sims-first-principles.R | 4 simodels-0.1.0/simodels/inst/doc/sims-first-principles.Rmd | 2 simodels-0.1.0/simodels/inst/doc/sims-first-principles.html | 5195 ----------- simodels-0.1.0/simodels/vignettes/simodels.Rmd | 5 simodels-0.1.0/simodels/vignettes/sims-first-principles.Rmd | 2 19 files changed, 481 insertions(+), 10339 deletions(-)
Title: Model Wrappers for Tree-Based Models
Description: Bindings for additional tree-based model engines for use with
the 'parsnip' package. Models include gradient boosted decision trees
with 'LightGBM' (Ke et al, 2017.),
conditional inference trees and conditional random forests with
'partykit' (Hothorn and Zeileis, 2015. and
Hothorn et al, 2006. <doi:10.1198/106186006X133933>), and accelerated
oblique random forests with 'aorsf' (Jaeger et al, 2022
<doi:10.5281/zenodo.7116854>).
Author: Daniel Falbel [aut],
Athos Damiani [aut],
Roel M. Hogervorst [aut] ,
Max Kuhn [aut] ,
Simon Couch [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Simon Couch <simon.couch@posit.co>
Diff between bonsai versions 0.3.0 dated 2024-06-23 and 0.3.1 dated 2024-07-23
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/aorsf_data.R | 5 +++++ build/partial.rdb |binary build/vignette.rds |binary 6 files changed, 17 insertions(+), 8 deletions(-)
Title: Binscatter Estimation and Inference
Description: Provides tools for statistical analysis using the binscatter methods developed by Cattaneo, Crump, Farrell and Feng (2024a) <doi:10.48550/arXiv.1902.09608>, Cattaneo, Crump, Farrell and Feng (2024b) <https://nppackages.github.io/references/Cattaneo-Crump-Farrell-Feng_2024_NonlinearBinscatter.pdf> and Cattaneo, Crump, Farrell and Feng (2024c) <doi:10.48550/arXiv.1902.09615>. Binscatter provides a flexible way of describing the relationship between two variables based on partitioning/binning of the independent variable of interest. binsreg(), binsqreg() and binsglm() implement binscatter least squares regression, quantile regression and generalized linear regression respectively, with particular focus on constructing binned scatter plots. They also implement robust (pointwise and uniform) inference of regression functions and derivatives thereof. binstest() implements hypothesis testing procedures for parametric functional forms of and nonparametric shape restrictions o [...truncated...]
Author: Matias D. Cattaneo, Richard K. Crump, Max H. Farrell, Yingjie Feng
Maintainer: Yingjie Feng <fengyingjiepku@gmail.com>
Diff between binsreg versions 1.0 dated 2023-07-11 and 1.1 dated 2024-07-23
DESCRIPTION | 12 MD5 | 32 R/binsglm.R | 3627 ++++++++++++++++++++++++------------------------- R/binspwc.R | 2324 ++++++++++++++++--------------- R/binsqreg.R | 3355 ++++++++++++++++++++++----------------------- R/binsreg-package.R | 103 - R/binsreg.R | 3353 ++++++++++++++++++++++----------------------- R/binsreg_functions.R | 18 R/binsregselect.R | 1544 ++++++++++---------- R/binstest.R | 2475 ++++++++++++++++----------------- man/binsglm.Rd | 14 man/binspwc.Rd | 57 man/binsqreg.Rd | 20 man/binsreg-package.Rd | 16 man/binsreg.Rd | 12 man/binsregselect.Rd | 10 man/binstest.Rd | 23 17 files changed, 8616 insertions(+), 8379 deletions(-)
Title: Estimation Methods for Causal Inference Based on Inverse
Probability Weighting
Description: Various estimators of causal effects based on inverse probability weighting, doubly robust estimation, and double machine learning. Specifically, the package includes methods for estimating average treatment effects, direct and indirect effects in causal mediation analysis, and dynamic treatment effects. The models refer to studies of Froelich (2007) <doi:10.1016/j.jeconom.2006.06.004>, Huber (2012) <doi:10.3102/1076998611411917>, Huber (2014) <doi:10.1080/07474938.2013.806197>, Huber (2014) <doi:10.1002/jae.2341>, Froelich and Huber (2017) <doi:10.1111/rssb.12232>, Hsu, Huber, Lee, and Lettry (2020) <doi:10.1002/jae.2765>, and others.
Author: Hugo Bodory [aut, cre] ,
Martin Huber [aut] ,
Jannis Kueck [aut]
Maintainer: Hugo Bodory <hugo.bodory@unisg.ch>
Diff between causalweight versions 1.1.0 dated 2024-01-24 and 1.1.1 dated 2024-07-23
DESCRIPTION | 10 +- MD5 | 24 ++++-- NAMESPACE | 107 ++++++++++++++++-------------- R/didDML.R |only R/didcontDML.R |only R/didcontDMLpanel.R |only R/didweight.R | 2 R/functions.R | 87 ++++++++++++++++++++++++ R/paneltestDML.R |only R/testmedident.R |only man/didDML.Rd |only man/didcontDML.Rd |only man/didcontDMLpanel.Rd |only man/didweight.Rd | 2 man/india.Rd | 88 ++++++++++++------------- man/paneltestDML.Rd |only man/rkd.Rd | 172 ++++++++++++++++++++++++------------------------- man/testmedident.Rd |only 18 files changed, 298 insertions(+), 194 deletions(-)
Title: Read, Write and Edit xlsx Files
Description: Simplifies the creation of Excel .xlsx files by providing a
high level interface to writing, styling and editing worksheets.
Through the use of 'Rcpp', read/write times are comparable to the
'xlsx' and 'XLConnect' packages with the added benefit of removing the
dependency on Java.
Author: Philipp Schauberger [aut],
Alexander Walker [aut],
Luca Braglia [ctb],
Joshua Sturm [ctb],
Jan Marvin Garbuszus [ctb, cre],
Jordan Mark Barbone [ctb] ,
David Zimmermann [ctb]
Maintainer: Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>
Diff between openxlsx versions 4.2.5.2 dated 2023-02-06 and 4.2.6 dated 2024-07-23
DESCRIPTION | 32 LICENSE | 4 MD5 | 379 NAMESPACE | 222 NEWS.md | 996 +- R/CommentClass.R | 468 - R/HyperlinkClass.R | 218 R/RcppExports.R | 288 R/StyleClass.R | 586 - R/WorkbookClass.R | 8750 +++++++++---------- R/asserts.R | 192 R/baseXML.R | 970 +- R/borderFunctions.R | 1192 +- R/build_workbook.R | 306 R/chartsheet_class.R | 110 R/class_definitions.R | 322 R/conditional_formatting.R | 1360 +-- R/data-fontSizeLookupTables.R | 23 R/helperFunctions.R | 1970 ++-- R/loadWorkbook.R | 2094 ++-- R/onUnload.R | 6 R/openXL.R | 210 R/openxlsx-package.R | 6 R/openxlsx.R | 336 R/openxlsxCoerce.R | 474 - R/readWorkbook.R | 1213 +- R/sheet_data_class.R | 204 R/sysdata.rda |binary R/utils.R | 112 R/workbook_column_widths.R | 394 R/workbook_read_workbook.R | 722 - R/workbook_write_data.R | 616 - R/worksheet_class.R | 552 - R/wrappers.R | 9432 ++++++++++----------- R/writeData.R | 1119 +- R/writeDataTable.R | 657 - R/writexlsx.R | 135 R/zzz.R | 14 README.md | 84 build/vignette.rds |binary data |only inst/WORDLIST | 276 inst/doc/Formatting.R | 27 inst/doc/Formatting.Rmd | 648 - inst/doc/Formatting.html | 657 - inst/doc/Introduction.R | 56 inst/doc/Introduction.Rmd | 1024 +- inst/doc/Introduction.html | 865 - inst/extdata/build_font_size_lookup.R | 128 inst/extdata/conditional_formatting_testing.R | 160 inst/extdata/load_xlsx_testing.R | 350 inst/extdata/stack_style_testing.R | 252 man/NamedRegion.Rd | 152 man/activeSheet.Rd | 76 man/addCreator.Rd | 48 man/addFilter.Rd | 96 man/addStyle.Rd | 122 man/addWorksheet.Rd | 254 man/all.equal.Rd | 38 man/as.character.formula.Rd |only man/buildWorkbook.Rd | 202 man/cloneWorksheet.Rd | 74 man/col2int.Rd | 34 man/conditionalFormat.Rd | 94 man/conditionalFormatting.Rd | 651 - man/convertFromExcelRef.Rd | 42 man/convertToDate.Rd | 58 man/convertToDateTime.Rd | 56 man/copyWorkbook.Rd | 58 man/createComment.Rd | 102 man/createStyle.Rd | 344 man/createWorkbook.Rd | 108 man/dataValidation.Rd | 196 man/deleteData.Rd | 82 man/deleteDataColumn.Rd |only man/freezePane.Rd | 110 man/getBaseFont.Rd | 58 man/getCellRefs.Rd | 52 man/getCreators.Rd | 52 man/getDateOrigin.Rd | 78 man/getNamedRegions.Rd | 106 man/getSheetNames.Rd | 46 man/getStyles.Rd | 44 man/getTables.Rd | 56 man/groupColumns.Rd | 62 man/groupRows.Rd | 52 man/if_null_then.Rd | 50 man/insertImage.Rd | 132 man/insertPlot.Rd | 160 man/int2col.Rd | 34 man/loadWorkbook.Rd | 84 man/makeHyperlinkString.Rd | 194 man/mergeCells.Rd | 116 man/modifyBaseFont.Rd | 80 man/names.Rd | 64 man/openXL.Rd | 86 man/openxlsx.Rd | 125 man/openxlsxFontSizeLookupTable.Rd | 42 man/openxlsx_options.Rd | 90 man/pageBreak.Rd | 72 man/pageSetup.Rd | 330 man/protectWorkbook.Rd | 94 man/protectWorksheet.Rd | 180 man/read.xlsx.Rd | 228 man/readWorkbook.Rd | 168 man/removeCellMerge.Rd | 54 man/removeColWidths.Rd | 68 man/removeComment.Rd | 56 man/removeFilter.Rd | 76 man/removeRowHeights.Rd | 68 man/removeTable.Rd | 96 man/removeWorksheet.Rd | 66 man/renameWorksheet.Rd | 96 man/replaceStyle.Rd | 88 man/saveWorkbook.Rd | 90 man/setColWidths.Rd | 142 man/setFooter.Rd | 80 man/setHeader.Rd | 80 man/setHeaderFooter.Rd | 202 man/setLastModifiedBy.Rd | 48 man/setRowHeights.Rd | 88 man/sheetVisibility.Rd | 74 man/sheetVisible.Rd | 76 man/sheets.Rd | 88 man/showGridLines.Rd | 60 man/temp_xlsx.Rd | 28 man/ungroupColumns.Rd | 54 man/ungroupRows.Rd | 54 man/worksheetOrder.Rd | 98 man/write.xlsx.Rd | 264 man/writeComment.Rd | 94 man/writeData.Rd | 426 man/writeDataTable.Rd | 390 man/writeFormula.Rd | 230 src/read_workbook.cpp | 18 src/write_data.cpp | 2 tests/testthat.R | 8 tests/testthat/test-CommentClass.R | 36 tests/testthat/test-Workbook_properties.R | 100 tests/testthat/test-Worksheet_naming.R | 92 tests/testthat/test-activeSheet.R | 66 tests/testthat/test-border_parsing.R | 642 - tests/testthat/test-build_workbook.R | 84 tests/testthat/test-cloneWorksheet.R | 64 tests/testthat/test-conditionalFormatting.R | 145 tests/testthat/test-date_time_conversion.R | 70 tests/testthat/test-deleting_tables.R | 444 tests/testthat/test-encoding.R | 182 tests/testthat/test-fill_merged_cells.R | 88 tests/testthat/test-fontSizeLookupTables.R | 8 tests/testthat/test-freeze_pane.R | 222 tests/testthat/test-getBaseFont.R | 44 tests/testthat/test-getCellRefs.R | 48 tests/testthat/test-load_read_file_read_equality.R | 86 tests/testthat/test-loading_workbook.R | 2088 ++-- tests/testthat/test-loading_workbook_tables.R | 76 tests/testthat/test-loading_workbook_unzipped.R | 64 tests/testthat/test-named_regions.R | 828 - tests/testthat/test-options.R | 102 tests/testthat/test-outlines.R | 282 tests/testthat/test-page_setup.R | 80 tests/testthat/test-protect-workbook.R | 66 tests/testthat/test-protect-worksheet.R | 40 tests/testthat/test-read_from_created_wb.R | 722 - tests/testthat/test-read_from_loaded_workbook.R | 646 - tests/testthat/test-read_sources.R | 133 tests/testthat/test-read_write_logicals.R | 94 tests/testthat/test-read_xlsx_correct_sheet.R | 64 tests/testthat/test-read_xlsx_random_seed.R | 22 tests/testthat/test-remove_worksheets.R | 124 tests/testthat/test-saveWorkbook.R | 126 tests/testthat/test-skip_empty_cols.R | 494 - tests/testthat/test-skip_empty_rows.R | 642 - tests/testthat/test-styles.R | 100 tests/testthat/test-table_overlaps.R | 206 tests/testthat/test-trying_to_break_openxlsx.R | 424 tests/testthat/test-v3_0_0_bugs.R | 28 tests/testthat/test-validate_table_name.R | 98 tests/testthat/test-worksheet_ordering.R | 568 - tests/testthat/test-worksheet_renaming.R | 116 tests/testthat/test-wrappers.R | 156 tests/testthat/test-write-permissions.R | 38 tests/testthat/test-writeData.R | 109 tests/testthat/test-writeDataTable.R |only tests/testthat/test-write_data_to_sheetData.R | 622 - tests/testthat/test-write_data_to_sheetData_NAs.R | 278 tests/testthat/test-write_read_equality.R | 588 - tests/testthat/test-write_xlsx_vector_args.R | 236 tests/testthat/test-writing_posixct.R | 198 tests/testthat/test-writing_sheet_data.R | 446 vignettes/Formatting.Rmd | 648 - vignettes/Introduction.Rmd | 1024 +- 192 files changed, 33008 insertions(+), 32494 deletions(-)
Title: Mediterranean Forest Simulation
Description: Simulate Mediterranean forest functioning and dynamics using cohort-based description of vegetation [De Caceres et al. (2015) <doi:10.1016/j.agrformet.2015.06.012>; De Caceres et al. (2021) <doi:10.1016/j.agrformet.2020.108233>].
Author: Miquel De Caceres [aut, cre, cph]
,
Nicolas Martin-StPaul [aut] ,
Victor Granda [aut] ,
Antoine Cabon [aut] ,
Jordi Martinez-Vilalta [ctb] ,
Maurizio Mencuccini [ctb] ,
Julien Ruffault [ctb],
Francois Pimont [ctb] ,
Herve Cochard [ctb] ,
Aitor Amezte [...truncated...]
Maintainer: Miquel De Caceres <miquelcaceres@gmail.com>
Diff between medfate versions 4.3.1 dated 2024-05-25 and 4.4.0 dated 2024-07-23
medfate-4.3.1/medfate/R/forest.R |only medfate-4.3.1/medfate/man/exampleforest.Rd |only medfate-4.4.0/medfate/DESCRIPTION | 10 medfate-4.4.0/medfate/MD5 | 211 - medfate-4.4.0/medfate/R/RcppExports.R | 345 +- medfate-4.4.0/medfate/R/VerticalProfiles.R | 6 medfate-4.4.0/medfate/R/dataset_documentation.R | 68 medfate-4.4.0/medfate/R/defaultControl.R | 20 medfate-4.4.0/medfate/R/emptyforest.R |only medfate-4.4.0/medfate/R/evaluation.R | 2 medfate-4.4.0/medfate/R/hydraulics_supplyFunctionPlot.R | 1 medfate-4.4.0/medfate/R/hydraulics_vulnerabilityCurvePlot.R | 1 medfate-4.4.0/medfate/R/moisture_pressureVolumeCurvePlot.R | 1 medfate-4.4.0/medfate/R/plot.forest.R | 2 medfate-4.4.0/medfate/R/plot.spwb.R | 3 medfate-4.4.0/medfate/R/plot_internals.R | 16 medfate-4.4.0/medfate/R/regeneration.R | 5 medfate-4.4.0/medfate/R/stand_metrics.R | 8 medfate-4.4.0/medfate/R/summary.forest.R |only medfate-4.4.0/medfate/R/summary.spwb.R | 3 medfate-4.4.0/medfate/R/transp_maximumTranspirationModel.R | 1 medfate-4.4.0/medfate/R/transp_stomatalRegulationPlot.R | 1 medfate-4.4.0/medfate/R/tree2forest.R | 3 medfate-4.4.0/medfate/build/partial.rdb |binary medfate-4.4.0/medfate/data/SpParamsDefinition.rda |binary medfate-4.4.0/medfate/inst/include/medfate_RcppExports.h | 23 medfate-4.4.0/medfate/man/SpParams.Rd | 4 medfate-4.4.0/medfate/man/aspwb.Rd | 1 medfate-4.4.0/medfate/man/biophysics.Rd | 3 medfate-4.4.0/medfate/man/carbon.Rd | 1 medfate-4.4.0/medfate/man/defaultControl.Rd | 11 medfate-4.4.0/medfate/man/emptyforest.Rd |only medfate-4.4.0/medfate/man/evaluation.Rd | 2 medfate-4.4.0/medfate/man/fire_behaviour.Rd | 24 medfate-4.4.0/medfate/man/fire_severity.Rd | 1 medfate-4.4.0/medfate/man/forest.Rd | 64 medfate-4.4.0/medfate/man/forest2aboveground.Rd | 3 medfate-4.4.0/medfate/man/fuel_properties.Rd | 32 medfate-4.4.0/medfate/man/fuel_windAdjustmentFactor.Rd |only medfate-4.4.0/medfate/man/growth.Rd | 2 medfate-4.4.0/medfate/man/herb_values.Rd | 1 medfate-4.4.0/medfate/man/hydraulics_conductancefunctions.Rd | 1 medfate-4.4.0/medfate/man/hydraulics_defoliation.Rd | 1 medfate-4.4.0/medfate/man/hydraulics_scalingconductance.Rd | 1 medfate-4.4.0/medfate/man/hydraulics_supplyfunctions.Rd | 1 medfate-4.4.0/medfate/man/hydrology_infiltration.Rd | 1 medfate-4.4.0/medfate/man/hydrology_interception.Rd | 1 medfate-4.4.0/medfate/man/hydrology_soilEvaporation.Rd | 1 medfate-4.4.0/medfate/man/hydrology_soilWaterBalance.Rd | 26 medfate-4.4.0/medfate/man/hydrology_verticalInputs.Rd | 1 medfate-4.4.0/medfate/man/light_advanced.Rd | 1 medfate-4.4.0/medfate/man/light_basic.Rd | 1 medfate-4.4.0/medfate/man/modelInput.Rd | 47 medfate-4.4.0/medfate/man/moisture.Rd | 1 medfate-4.4.0/medfate/man/mortality_dailyProbability.Rd | 1 medfate-4.4.0/medfate/man/pheno_updateLeaves.Rd | 1 medfate-4.4.0/medfate/man/photo.Rd | 1 medfate-4.4.0/medfate/man/plant_values.Rd | 1 medfate-4.4.0/medfate/man/plot.forest.Rd | 2 medfate-4.4.0/medfate/man/plot.spwb.Rd | 3 medfate-4.4.0/medfate/man/regeneration.Rd | 1 medfate-4.4.0/medfate/man/root.Rd | 1 medfate-4.4.0/medfate/man/soil_texture.Rd | 1 medfate-4.4.0/medfate/man/soil_thermodynamics.Rd | 1 medfate-4.4.0/medfate/man/species_values.Rd | 1 medfate-4.4.0/medfate/man/spwb.Rd | 2 medfate-4.4.0/medfate/man/stand_values.Rd | 2 medfate-4.4.0/medfate/man/summary.forest.Rd |only medfate-4.4.0/medfate/man/summary.spwb.Rd | 3 medfate-4.4.0/medfate/man/sureau_ecos.Rd | 1 medfate-4.4.0/medfate/man/transp_maximumTranspirationModel.Rd | 1 medfate-4.4.0/medfate/man/transp_modes.Rd | 1 medfate-4.4.0/medfate/man/transp_stomatalregulation.Rd | 1 medfate-4.4.0/medfate/man/tree2forest.Rd | 3 medfate-4.4.0/medfate/man/vprofile_leafAreaDensity.Rd | 1 medfate-4.4.0/medfate/man/wind.Rd | 1 medfate-4.4.0/medfate/man/woodformation.Rd | 1 medfate-4.4.0/medfate/src/RcppExports.cpp | 46 medfate-4.4.0/medfate/src/aspwb.cpp | 3 medfate-4.4.0/medfate/src/biophysicsutils.cpp | 9 medfate-4.4.0/medfate/src/carbon.cpp | 10 medfate-4.4.0/medfate/src/firebehaviour.cpp | 24 medfate-4.4.0/medfate/src/fireseverity.cpp | 6 medfate-4.4.0/medfate/src/forestutils.cpp | 34 medfate-4.4.0/medfate/src/fuelstructure.cpp | 21 medfate-4.4.0/medfate/src/fuelstructure.h | 1 medfate-4.4.0/medfate/src/growth.cpp | 3 medfate-4.4.0/medfate/src/hydraulics.cpp | 33 medfate-4.4.0/medfate/src/hydrology.cpp | 1538 +++++----- medfate-4.4.0/medfate/src/hydrology.h | 2 medfate-4.4.0/medfate/src/inner_sperry.cpp | 1 medfate-4.4.0/medfate/src/inner_sureau.cpp | 22 medfate-4.4.0/medfate/src/lightextinction_advanced.cpp | 10 medfate-4.4.0/medfate/src/lightextinction_basic.cpp | 4 medfate-4.4.0/medfate/src/modelInput.cpp | 62 medfate-4.4.0/medfate/src/paramutils.cpp | 27 medfate-4.4.0/medfate/src/phenology.cpp | 5 medfate-4.4.0/medfate/src/photosynthesis.cpp | 8 medfate-4.4.0/medfate/src/root.cpp | 15 medfate-4.4.0/medfate/src/soil.cpp | 30 medfate-4.4.0/medfate/src/soil.h | 2 medfate-4.4.0/medfate/src/soil_thermodynamics.cpp | 4 medfate-4.4.0/medfate/src/spwb.cpp | 59 medfate-4.4.0/medfate/src/tissuemoisture.cpp | 9 medfate-4.4.0/medfate/src/transpiration_advanced.cpp | 26 medfate-4.4.0/medfate/src/transpiration_basic.cpp | 8 medfate-4.4.0/medfate/src/windKatul.cpp | 2 medfate-4.4.0/medfate/src/windextinction.cpp | 27 medfate-4.4.0/medfate/src/woodformation.cpp | 4 medfate-4.4.0/medfate/tests/testthat/Rplots.pdf |binary 110 files changed, 1863 insertions(+), 1186 deletions(-)
Title: Presentation-Ready Data Summary and Analytic Result Tables
Description: Creates presentation-ready tables summarizing data sets,
regression models, and more. The code to create the tables is concise
and highly customizable. Data frames can be summarized with any
function, e.g. mean(), median(), even user-written functions.
Regression models are summarized and include the reference rows for
categorical variables. Common regression models, such as logistic
regression and Cox proportional hazards regression, are automatically
identified and the tables are pre-filled with appropriate column
headers.
Author: Daniel D. Sjoberg [aut, cre] ,
Joseph Larmarange [aut] ,
Michael Curry [aut] ,
Jessica Lavery [aut] ,
Karissa Whiting [aut] ,
Emily C. Zabor [aut] ,
Xing Bai [ctb],
Esther Drill [ctb] ,
Jessica Flynn [ctb] ,
Margie Hannum [ctb] ,
Stephanie Lobaugh [c [...truncated...]
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between gtsummary versions 1.7.2 dated 2023-07-15 and 2.0.0 dated 2024-07-23
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154 - gtsummary-2.0.0/gtsummary/man/tbl_summary.Rd | 297 -- gtsummary-2.0.0/gtsummary/man/tbl_survfit.Rd | 155 - gtsummary-2.0.0/gtsummary/man/tbl_svysummary.Rd | 183 - gtsummary-2.0.0/gtsummary/man/tbl_uvregression.Rd | 244 - gtsummary-2.0.0/gtsummary/man/tbl_wide_summary.Rd |only gtsummary-2.0.0/gtsummary/man/tests.Rd | 29 gtsummary-2.0.0/gtsummary/man/theme_gtsummary.Rd | 58 gtsummary-2.0.0/gtsummary/man/vec_to_df.Rd |only gtsummary-2.0.0/gtsummary/tests/testthat.R | 9 gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/add_ci.tbl_summary.md |only gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/add_ci.tbl_svysummary.md |only gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/add_difference.tbl_summary.md |only gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/add_difference.tbl_svysummary.md |only gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/add_glance.md | 83 gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/add_global_p.tbl_regression.md |only 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gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/add_significance_stars.md | 22 gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/add_stat.md |only gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/add_stat_label.md | 555 --- gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/add_stat_label.tbl_svysummary.md |only gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/add_vif.md | 66 gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/as_hux_table.md | 192 - gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/as_kable.md | 108 gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/as_kable_extra.md | 739 ----- gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/as_tibble.md | 67 gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/bold_p.md | 32 gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/combine_terms.md | 153 - gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/custom_tidiers.md | 146 - gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/inline_text.md |only gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/modify_column_hide.md | 6 gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/modify_column_merge.md | 16 gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/modify_footnote.md | 61 gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/modify_header.md | 161 - gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/modify_spanning_header.md | 31 gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/modify_table_body.md | 26 gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/modify_table_styling.md | 76 gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/remove_row_type.md | 44 gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/separate_p_footnotes.md | 50 gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/show_header_names.md |only gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/sort_filter_p.md |only gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/style_pvalue.md |only gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/tbl_ard_continuous.md |only gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/tbl_ard_summary.md |only gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/tbl_ard_wide_summary.md |only gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/tbl_continuous.md | 131 gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/tbl_cross.md | 380 -- gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/tbl_custom_summary.md | 153 - gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/tbl_merge.md | 108 gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/tbl_regression.md | 227 - gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/tbl_regression_methods.md |only gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/tbl_stack.md | 201 - gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/tbl_summary.md | 931 ++---- gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/tbl_svysummary.md | 703 ++-- gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/tbl_uvregression.md | 281 + gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/tbl_wide_summary.md |only gtsummary-2.0.0/gtsummary/tests/testthat/_snaps/theme_gtsummary.md |only gtsummary-2.0.0/gtsummary/tests/testthat/test-add_ci.tbl_summary.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-add_ci.tbl_svysummary.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-add_difference.tbl_summary.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-add_difference.tbl_svysummary.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-add_glance.R | 194 - gtsummary-2.0.0/gtsummary/tests/testthat/test-add_global_p.R | 134 gtsummary-2.0.0/gtsummary/tests/testthat/test-add_global_p.tbl_regression.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-add_global_p.tbl_uvregression.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-add_n.tbl_regression.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-add_n.tbl_summary.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-add_n.tbl_survfit.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-add_n.tbl_svysummary.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-add_n.tbl_uvregression.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-add_nevent.tbl_regression.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-add_nevent.tbl_survfit.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-add_nevent.tbl_uvregression.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-add_overall.tbl_continuous.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-add_overall.tbl_summary.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-add_overall.tbl_svysummary.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-add_p.tbl_continuous.R | 146 - gtsummary-2.0.0/gtsummary/tests/testthat/test-add_p.tbl_cross.R | 104 gtsummary-2.0.0/gtsummary/tests/testthat/test-add_p.tbl_summary.R | 460 +-- gtsummary-2.0.0/gtsummary/tests/testthat/test-add_p.tbl_survfit.R | 152 - gtsummary-2.0.0/gtsummary/tests/testthat/test-add_p.tbl_svysummary.R | 447 +-- gtsummary-2.0.0/gtsummary/tests/testthat/test-add_q.R | 89 gtsummary-2.0.0/gtsummary/tests/testthat/test-add_significance_stars.R | 82 gtsummary-2.0.0/gtsummary/tests/testthat/test-add_stat.R | 229 + gtsummary-2.0.0/gtsummary/tests/testthat/test-add_stat_label.R | 138 gtsummary-2.0.0/gtsummary/tests/testthat/test-add_stat_label.tbl_svysummary.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-add_vif.R | 62 gtsummary-2.0.0/gtsummary/tests/testthat/test-as_flex_table.R | 475 ++- gtsummary-2.0.0/gtsummary/tests/testthat/test-as_gt.R | 516 +++ gtsummary-2.0.0/gtsummary/tests/testthat/test-as_hux_table.R | 298 +- gtsummary-2.0.0/gtsummary/tests/testthat/test-as_kable.R | 320 +- gtsummary-2.0.0/gtsummary/tests/testthat/test-as_kable_extra.R | 367 +- gtsummary-2.0.0/gtsummary/tests/testthat/test-as_tibble.R | 274 + gtsummary-2.0.0/gtsummary/tests/testthat/test-bold_italicize_labels_levels.R | 231 + gtsummary-2.0.0/gtsummary/tests/testthat/test-bold_p.R | 97 gtsummary-2.0.0/gtsummary/tests/testthat/test-combine_terms.R | 297 -- gtsummary-2.0.0/gtsummary/tests/testthat/test-custom_tidiers.R | 109 gtsummary-2.0.0/gtsummary/tests/testthat/test-inline_text.R | 393 +- gtsummary-2.0.0/gtsummary/tests/testthat/test-label_style.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-modify_caption.R | 112 gtsummary-2.0.0/gtsummary/tests/testthat/test-modify_column_alignment.R | 23 gtsummary-2.0.0/gtsummary/tests/testthat/test-modify_column_hide.R | 12 gtsummary-2.0.0/gtsummary/tests/testthat/test-modify_column_indent.R | 76 gtsummary-2.0.0/gtsummary/tests/testthat/test-modify_column_merge.R | 21 gtsummary-2.0.0/gtsummary/tests/testthat/test-modify_fmt_fun.R | 57 gtsummary-2.0.0/gtsummary/tests/testthat/test-modify_footnote.R | 256 + gtsummary-2.0.0/gtsummary/tests/testthat/test-modify_header.R | 274 + gtsummary-2.0.0/gtsummary/tests/testthat/test-modify_spanning_header.R | 217 + gtsummary-2.0.0/gtsummary/tests/testthat/test-modify_table_body.R | 45 gtsummary-2.0.0/gtsummary/tests/testthat/test-modify_table_styling.R | 416 ++ gtsummary-2.0.0/gtsummary/tests/testthat/test-plot.tbl_regression.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-plot.tbl_uvregression.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-remove_row_type.R | 97 gtsummary-2.0.0/gtsummary/tests/testthat/test-scoping_gtsummary.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-select_helpers.R | 159 - gtsummary-2.0.0/gtsummary/tests/testthat/test-separate_p_footnotes.R | 62 gtsummary-2.0.0/gtsummary/tests/testthat/test-show_header_names.R | 10 gtsummary-2.0.0/gtsummary/tests/testthat/test-sort_filter_p.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-style_percent.R | 25 gtsummary-2.0.0/gtsummary/tests/testthat/test-style_pvalue.R | 54 gtsummary-2.0.0/gtsummary/tests/testthat/test-style_ratio.R | 8 gtsummary-2.0.0/gtsummary/tests/testthat/test-style_sigfig.R | 8 gtsummary-2.0.0/gtsummary/tests/testthat/test-tbl_ard_continuous.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-tbl_ard_summary.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-tbl_ard_wide_summary.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-tbl_butcher.R | 21 gtsummary-2.0.0/gtsummary/tests/testthat/test-tbl_continuous.R | 218 + gtsummary-2.0.0/gtsummary/tests/testthat/test-tbl_cross.R | 256 - gtsummary-2.0.0/gtsummary/tests/testthat/test-tbl_custom_summary.R | 180 - gtsummary-2.0.0/gtsummary/tests/testthat/test-tbl_merge.R | 234 - gtsummary-2.0.0/gtsummary/tests/testthat/test-tbl_regression.R | 362 -- gtsummary-2.0.0/gtsummary/tests/testthat/test-tbl_regression_methods.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-tbl_split.R | 19 gtsummary-2.0.0/gtsummary/tests/testthat/test-tbl_stack.R | 334 +- gtsummary-2.0.0/gtsummary/tests/testthat/test-tbl_strata.R | 353 +- gtsummary-2.0.0/gtsummary/tests/testthat/test-tbl_summary.R | 1091 +++---- gtsummary-2.0.0/gtsummary/tests/testthat/test-tbl_survfit.R | 338 +- gtsummary-2.0.0/gtsummary/tests/testthat/test-tbl_svysummary.R | 983 +++--- gtsummary-2.0.0/gtsummary/tests/testthat/test-tbl_uvregression.R | 700 ++-- gtsummary-2.0.0/gtsummary/tests/testthat/test-tbl_wide_summary.R |only gtsummary-2.0.0/gtsummary/tests/testthat/test-theme_gtsummary.R |only gtsummary-2.0.0/gtsummary/vignettes/gtsummary_definition.Rmd | 54 gtsummary-2.0.0/gtsummary/vignettes/inline_text.Rmd | 2 gtsummary-2.0.0/gtsummary/vignettes/themes.Rmd | 59 477 files changed, 21832 insertions(+), 27455 deletions(-)
Title: Interface for the 'Finnish Biodiversity Information Facility'
API
Description: A programmatic interface to the 'Finnish Biodiversity Information
Facility' ('FinBIF') API (<https://api.laji.fi>). 'FinBIF' aggregates
Finnish biodiversity data from multiple sources in a single open access
portal for researchers, citizen scientists, industry and government.
'FinBIF' allows users of biodiversity information to find, access, combine
and visualise data on Finnish plants, animals and microorganisms. The
'finbif' package makes the publicly available data in 'FinBIF' easily
accessible to programmers. Biodiversity information is available on taxonomy
and taxon occurrence. Occurrence data can be filtered by taxon, time,
location and other variables. The data accessed are conveniently
preformatted for subsequent analyses.
Author: Finnish Museum of Natural History - Luomus [cph],
William K. Morris [aut, cre]
Maintainer: William K. Morris <willi@mmorris.email>
Diff between finbif versions 0.9.6 dated 2024-04-25 and 0.9.7 dated 2024-07-23
finbif-0.9.6/finbif/tests/testthat/helper-finbif.R |only finbif-0.9.6/finbif/tests/testthat/test-finbif_api_get.R |only finbif-0.9.6/finbif/tests/testthat/test-finbif_coords.R |only finbif-0.9.6/finbif/tests/testthat/test-finbif_dates.R |only finbif-0.9.6/finbif/tests/testthat/test-finbif_last_mod.R |only finbif-0.9.6/finbif/tests/testthat/test-finbif_occurrence-db.R |only finbif-0.9.6/finbif/tests/testthat/test-metadata.R |only finbif-0.9.6/finbif/tests/testthat/test-onload.R |only finbif-0.9.6/finbif/tests/testthat/test-sysdata.R |only finbif-0.9.6/finbif/tests/testthat/test-utils.R |only finbif-0.9.6/finbif/tests/write-files |only finbif-0.9.7/finbif/DESCRIPTION | 13 finbif-0.9.7/finbif/MD5 | 106 finbif-0.9.7/finbif/NEWS.md | 132 finbif-0.9.7/finbif/R/api_get.R | 8 finbif-0.9.7/finbif/R/dates.R | 10 finbif-0.9.7/finbif/R/finbif_collections.R | 2 finbif-0.9.7/finbif/R/finbif_occurrence.R | 78 finbif-0.9.7/finbif/R/finbif_records.R | 283 - finbif-0.9.7/finbif/R/finbif_request_token.R | 4 finbif-0.9.7/finbif/R/finbif_taxa.R | 4 finbif-0.9.7/finbif/R/methods.R | 6 finbif-0.9.7/finbif/R/sysdata.R | 2 finbif-0.9.7/finbif/R/sysdata.rda |binary finbif-0.9.7/finbif/R/utils.R | 39 finbif-0.9.7/finbif/README.md | 14 finbif-0.9.7/finbif/build/vignette.rds |binary finbif-0.9.7/finbif/inst/CITATION | 12 finbif-0.9.7/finbif/inst/NEWS.Rd | 27 finbif-0.9.7/finbif/inst/doc/finbif.html | 2 finbif-0.9.7/finbif/inst/doc/v02_occurrence_data.html | 2 finbif-0.9.7/finbif/inst/doc/v03_selecting_variables.html | 2 finbif-0.9.7/finbif/inst/doc/v04_metadata.html | 2 finbif-0.9.7/finbif/inst/doc/v05_filtering.html | 2 finbif-0.9.7/finbif/man/finbif_taxa.Rd | 4 finbif-0.9.7/finbif/tests/fixtures |only finbif-0.9.7/finbif/tests/testthat/HBF.6960.zip |only finbif-0.9.7/finbif/tests/testthat/_snaps/caching.md |only finbif-0.9.7/finbif/tests/testthat/_snaps/finbif_collections.md |only finbif-0.9.7/finbif/tests/testthat/_snaps/finbif_metadata.md |only finbif-0.9.7/finbif/tests/testthat/_snaps/finbif_occurrence.md |only finbif-0.9.7/finbif/tests/testthat/_snaps/finbif_occurrence_load.md | 2409 ++++++---- finbif-0.9.7/finbif/tests/testthat/helper.R |only finbif-0.9.7/finbif/tests/testthat/laji-data-pap.tsv | 8 finbif-0.9.7/finbif/tests/testthat/test-caching.R |only finbif-0.9.7/finbif/tests/testthat/test-finbif_check_taxa.R | 49 finbif-0.9.7/finbif/tests/testthat/test-finbif_clear_cache.R | 33 finbif-0.9.7/finbif/tests/testthat/test-finbif_collections.R | 54 finbif-0.9.7/finbif/tests/testthat/test-finbif_informal_groups.R |only finbif-0.9.7/finbif/tests/testthat/test-finbif_metadata.R |only finbif-0.9.7/finbif/tests/testthat/test-finbif_occurrence.R | 772 +-- finbif-0.9.7/finbif/tests/testthat/test-finbif_occurrence_load.R | 400 - finbif-0.9.7/finbif/tests/testthat/test-finbif_request_token.R | 97 finbif-0.9.7/finbif/tests/testthat/test-finbif_taxa.R | 50 finbif-0.9.7/finbif/tests/testthat/test-finbif_update_cache.R |only finbif-0.9.7/finbif/tests/testthat/test-to_dwc.R |only finbif-0.9.7/finbif/tests/testthat/test-zzz.R |only 57 files changed, 2389 insertions(+), 2237 deletions(-)
Title: Generate Citation File Format ('cff') Metadata for R Packages
Description: The Citation File Format version 1.2.0
<doi:10.5281/zenodo.5171937> is a human and machine readable file
format which provides citation metadata for software. This package
provides core utilities to generate and validate this metadata.
Author: Diego Hernangomez [aut, cre, cph]
,
Joao Martins [rev] ,
Scott Chamberlain [rev]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between cffr versions 1.0.1 dated 2024-04-09 and 1.1.0 dated 2024-07-23
DESCRIPTION | 8 MD5 | 60 - NEWS.md | 14 R/cff.R | 4 R/cff_read.R | 4 R/deprecated.R | 18 R/utils-cff_read.R | 20 R/utils-create.R | 25 R/utils-schema.R | 4 README.md | 132 +++ build/partial.rdb |binary build/vignette.rds |binary data/cran_to_spdx.rda |binary inst/WORDLIST | 1 inst/doc/cffr.html | 18 inst/doc/crosswalk.R | 14 inst/doc/crosswalk.Rmd | 46 - inst/doc/crosswalk.html | 1364 +++++++++++++++++++--------------- inst/extdata/cran_licenses.csv | 326 +++----- inst/schemaorg.json | 4 man/cff.Rd | 4 man/cff_class.Rd | 16 man/cran_to_spdx.Rd | 2 tests/testthat/_snaps/cff.md | 20 tests/testthat/_snaps/cff_create.md | 42 - tests/testthat/_snaps/cff_read.md | 1 tests/testthat/_snaps/mock-package.md | 14 tests/testthat/_snaps/utils-create.md | 22 tests/testthat/_snaps/utils-schema.md | 10 tests/testthat/test-cff_create.R | 4 vignettes/crosswalk.Rmd | 46 - 31 files changed, 1327 insertions(+), 916 deletions(-)
Title: A Simple XML Tree Parser and Generator
Description: Provides a simple XML tree parser/generator. It includes
functions to read XML files into R objects, get information out of
and into nodes, and write R objects back to XML code. It's not as
powerful as the 'XML' package and doesn't aim to be, but for simple
XML handling it could be useful. It was originally developed for
the R GUI and IDE 'RKWard' <https://rkward.kde.org>, to make plugin
development easier.
Author: Meik Michalke [aut, cre]
Maintainer: Meik Michalke <meik.michalke@hhu.de>
Diff between XiMpLe versions 0.11-2 dated 2023-08-22 and 0.11-3 dated 2024-07-23
ChangeLog | 129 +++++++++++++++++++++--------------------- DESCRIPTION | 27 +++++--- MD5 | 28 ++++----- R/XMLNode.R | 2 R/XiMpLe-package.R | 4 - R/zzz_is_get_utils.R | 8 +- README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 8 +- inst/NEWS.Rd | 32 +++++++--- inst/doc/XiMpLe_vignette.R | 10 +-- inst/doc/XiMpLe_vignette.html | 4 - man/XMLGetters-methods.Rd | 6 - man/XiMpLe-package.Rd | 4 - 15 files changed, 143 insertions(+), 121 deletions(-)
Title: R Bindings to the Calendaring Functionality of 'QuantLib'
Description: 'QuantLib' bindings are provided for R using 'Rcpp' via an evolved version
of the initial header-only 'Quantuccia' project offering an subset of 'QuantLib' (now
maintained separately just for the calendaring subset). See the included file 'AUTHORS'
for a full list of contributors to 'QuantLib' (and hence also 'Quantuccia').
Author: Dirk Eddelbuettel; the authors and contributors of QuantLib
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between qlcal versions 0.0.11 dated 2024-04-27 and 0.0.12 dated 2024-07-23
ChangeLog | 24 ++++++++++++++++++++++ DESCRIPTION | 8 +++---- MD5 | 26 +++++++++++------------ README.md | 9 +++++++- build/partial.rdb |binary inst/NEWS.Rd | 7 ++++++ src/ql/time/calendar.cpp | 4 +-- src/ql/time/calendars/brazil.cpp | 4 +-- src/ql/time/calendars/brazil.hpp | 4 +-- src/ql/time/calendars/chile.cpp | 36 ++++++++++++++++++++++++++++++++- src/ql/time/calendars/chile.hpp | 2 - src/ql/time/calendars/india.cpp | 10 ++++++--- src/ql/time/calendars/india.hpp | 4 +-- src/ql/time/calendars/unitedstates.cpp | 17 +++++++++++---- 14 files changed, 120 insertions(+), 35 deletions(-)
Title: Harmonised Index of Consumer Prices
Description: The Harmonised Index of Consumer Prices (HICP) is the key economic figure to measure inflation in the euro area.
The methodology underlying the HICP is documented in the HICP Methodological Manual (<https://ec.europa.eu/eurostat/web/products-manuals-and-guidelines/w/ks-gq-24-003>).
Based on the manual, this package provides functions to access and work with HICP data from Eurostat's public database (<https://ec.europa.eu/eurostat/data/database>).
Author: Sebastian Weinand [aut, cre]
Maintainer: Sebastian Weinand <sebastian.weinand@ec.europa.eu>
Diff between hicp versions 0.6.0 dated 2024-07-19 and 0.6.1 dated 2024-07-23
DESCRIPTION | 6 MD5 | 12 - NEWS.md | 4 inst/doc/hicp_intro.R | 15 -- inst/doc/hicp_intro.Rmd | 15 -- inst/doc/hicp_intro.html | 346 +++++++++++++++++++++++------------------------ vignettes/hicp_intro.Rmd | 15 -- 7 files changed, 202 insertions(+), 211 deletions(-)
Title: A Clustering Method for Time-Series Whole-Brain Activity Data of
'C. elegans'
Description: A toolkit to detect clusters from distance matrices.
The distance matrices are assumed to be calculated between the cells of
multiple animals ('Caenorhabditis elegans') from input time-series matrices.
Some functions for generating distance matrices, performing clustering,
evaluating the clustering, and visualizing the results of clustering and
evaluation are available. We're also providing the download function to
retrieve the calculated distance matrices from
'figshare' <https://figshare.com>.
Author: Kentaro Yamamoto [aut, cre],
Koki Tsuyuzaki [aut],
Itoshi Nikaido [aut]
Maintainer: Kentaro Yamamoto <yamaken37.the.answer@gmail.com>
Diff between WormTensor versions 0.1.0 dated 2022-09-08 and 0.1.1 dated 2024-07-23
DESCRIPTION | 6 +-- MD5 | 14 +++---- NEWS.md | 4 ++ R/as_worm_tensor.R | 2 - inst/doc/WormTensor.R | 2 - inst/doc/WormTensor.html | 64 +++++++++++++++++++----------------- tests/testthat/test-worm_distance.R | 8 +--- tests/testthat/test-worm_download.R | 10 ++--- 8 files changed, 58 insertions(+), 52 deletions(-)
Title: Time Series Clustering Along with Optimizations for the Dynamic
Time Warping Distance
Description: Time series clustering along with optimized techniques related
to the Dynamic Time Warping distance and its corresponding lower bounds.
Implementations of partitional, hierarchical, fuzzy, k-Shape and TADPole
clustering are available. Functionality can be easily extended with
custom distance measures and centroid definitions. Implementations of
DTW barycenter averaging, a distance based on global alignment kernels,
and the soft-DTW distance and centroid routines are also provided.
All included distance functions have custom loops optimized for the
calculation of cross-distance matrices, including parallelization support.
Several cluster validity indices are included.
Author: Alexis Sarda-Espinosa
Maintainer: Alexis Sarda <alexis.sarda@gmail.com>
Diff between dtwclust versions 5.5.12 dated 2023-02-28 and 6.0.0 dated 2024-07-23
dtwclust-5.5.12/dtwclust/tests/testthat/acceptance |only dtwclust-5.5.12/dtwclust/tests/testthat/integration |only dtwclust-5.5.12/dtwclust/tests/testthat/regression |only dtwclust-5.5.12/dtwclust/tests/testthat/system |only dtwclust-5.5.12/dtwclust/tests/testthat/test-01-unit.R |only dtwclust-5.5.12/dtwclust/tests/testthat/test-02-integration.R |only dtwclust-5.5.12/dtwclust/tests/testthat/test-03-acceptance.R |only dtwclust-5.5.12/dtwclust/tests/testthat/test-04-system.R |only dtwclust-5.5.12/dtwclust/tests/testthat/test-05-regression.R |only dtwclust-5.5.12/dtwclust/tests/testthat/unit |only dtwclust-6.0.0/dtwclust/DESCRIPTION | 20 dtwclust-6.0.0/dtwclust/MD5 | 212 +++---- dtwclust-6.0.0/dtwclust/NAMESPACE | 17 dtwclust-6.0.0/dtwclust/R/CENTROIDS-dba.R | 8 dtwclust-6.0.0/dtwclust/R/CENTROIDS-pam.R | 27 - dtwclust-6.0.0/dtwclust/R/CENTROIDS-sdtw-cent.R | 6 dtwclust-6.0.0/dtwclust/R/CENTROIDS-shape-extraction.R | 10 dtwclust-6.0.0/dtwclust/R/CLUSTERING-all-cent2.R | 15 dtwclust-6.0.0/dtwclust/R/CLUSTERING-compare-clusterings.R | 20 dtwclust-6.0.0/dtwclust/R/CLUSTERING-cvi-evaluators.R | 4 dtwclust-6.0.0/dtwclust/R/CLUSTERING-ddist2.R | 28 - dtwclust-6.0.0/dtwclust/R/CLUSTERING-repeat-clustering.R | 267 +++++----- dtwclust-6.0.0/dtwclust/R/CLUSTERING-tadpole.R | 6 dtwclust-6.0.0/dtwclust/R/CLUSTERING-tsclust.R | 80 +- dtwclust-6.0.0/dtwclust/R/DISTANCES-dtw-basic.R | 18 dtwclust-6.0.0/dtwclust/R/DISTANCES-dtw-lb.R | 6 dtwclust-6.0.0/dtwclust/R/DISTANCES-dtw2.R | 116 ++-- dtwclust-6.0.0/dtwclust/R/DISTANCES-gak.R | 32 + dtwclust-6.0.0/dtwclust/R/DISTANCES-lb-improved.R | 11 dtwclust-6.0.0/dtwclust/R/DISTANCES-lb-keogh.R | 7 dtwclust-6.0.0/dtwclust/R/DISTANCES-sbd.R | 17 dtwclust-6.0.0/dtwclust/R/DISTANCES-sdtw.R | 67 ++ dtwclust-6.0.0/dtwclust/R/RD-helpers.R |only dtwclust-6.0.0/dtwclust/R/S4-Distmat.R | 3 dtwclust-6.0.0/dtwclust/R/S4-DistmatLowerTriangular.R |only dtwclust-6.0.0/dtwclust/R/S4-SparseDistmat.R | 4 dtwclust-6.0.0/dtwclust/R/S4-TSClusters-methods.R | 84 +-- dtwclust-6.0.0/dtwclust/R/S4-tsclustFamily.R | 34 - dtwclust-6.0.0/dtwclust/R/SHINY-utils.R | 11 dtwclust-6.0.0/dtwclust/R/UTILS-compute-envelope.R | 6 dtwclust-6.0.0/dtwclust/R/UTILS-expressions.R | 29 - dtwclust-6.0.0/dtwclust/R/UTILS-nccc.R | 2 dtwclust-6.0.0/dtwclust/R/UTILS-utils.R | 90 ++- dtwclust-6.0.0/dtwclust/R/UTILS-zscore.R | 2 dtwclust-6.0.0/dtwclust/build/partial.rdb |binary dtwclust-6.0.0/dtwclust/build/vignette.rds |binary dtwclust-6.0.0/dtwclust/inst/COPYRIGHTS | 2 dtwclust-6.0.0/dtwclust/inst/NEWS.Rd | 6 dtwclust-6.0.0/dtwclust/inst/doc/dtwclust.pdf |binary dtwclust-6.0.0/dtwclust/inst/doc/parallelization-considerations.html | 22 dtwclust-6.0.0/dtwclust/inst/doc/timing-experiments.html | 43 - dtwclust-6.0.0/dtwclust/inst/interactive-clustering/main.R | 2 dtwclust-6.0.0/dtwclust/inst/ssdtwclust/main.R | 2 dtwclust-6.0.0/dtwclust/man/DBA.Rd | 35 - dtwclust-6.0.0/dtwclust/man/DistmatLowerTriangular-class.Rd |only dtwclust-6.0.0/dtwclust/man/DistmatLowerTriangular-generics.Rd |only dtwclust-6.0.0/dtwclust/man/GAK.Rd | 34 - dtwclust-6.0.0/dtwclust/man/SBD.Rd | 36 - dtwclust-6.0.0/dtwclust/man/TADPole.Rd | 33 - dtwclust-6.0.0/dtwclust/man/compute_envelope.Rd | 9 dtwclust-6.0.0/dtwclust/man/dtw2.Rd | 9 dtwclust-6.0.0/dtwclust/man/dtw_basic.Rd | 45 - dtwclust-6.0.0/dtwclust/man/dtw_lb.Rd | 33 - dtwclust-6.0.0/dtwclust/man/lb_improved.Rd | 28 - dtwclust-6.0.0/dtwclust/man/lb_keogh.Rd | 28 - dtwclust-6.0.0/dtwclust/man/sdtw.Rd | 40 - dtwclust-6.0.0/dtwclust/man/sdtw_cent.Rd | 26 dtwclust-6.0.0/dtwclust/man/tsclust.Rd | 6 dtwclust-6.0.0/dtwclust/man/tsclustFamily-class.Rd | 1 dtwclust-6.0.0/dtwclust/man/tsclusters-methods.Rd | 5 dtwclust-6.0.0/dtwclust/src/Makevars | 1 dtwclust-6.0.0/dtwclust/src/Makevars.win | 2 dtwclust-6.0.0/dtwclust/src/centroids/R-gateways.h | 1 dtwclust-6.0.0/dtwclust/src/centroids/dba.cpp | 3 dtwclust-6.0.0/dtwclust/src/centroids/sdtw-cent.cpp | 3 dtwclust-6.0.0/dtwclust/src/distances/R-gateways.h | 1 dtwclust-6.0.0/dtwclust/src/distances/calculators.cpp | 23 dtwclust-6.0.0/dtwclust/src/distances/calculators.h | 4 dtwclust-6.0.0/dtwclust/src/distmat/R-gateways.h | 1 dtwclust-6.0.0/dtwclust/src/distmat/distmat-loop.cpp | 12 dtwclust-6.0.0/dtwclust/src/distmat/distmat.h | 1 dtwclust-6.0.0/dtwclust/src/distmat/fillers.cpp | 186 ++++++ dtwclust-6.0.0/dtwclust/src/distmat/fillers.h | 42 + dtwclust-6.0.0/dtwclust/src/tadpole/R-gateways.h | 1 dtwclust-6.0.0/dtwclust/src/utils/R-gateways.h | 1 dtwclust-6.0.0/dtwclust/tests/testthat/Rplots.pdf |binary dtwclust-6.0.0/dtwclust/tests/testthat/helper-all.R | 24 dtwclust-6.0.0/dtwclust/tests/testthat/test-01-unit-01-methods.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-01-unit-02-misc.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-01-unit-03-distances.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-01-unit-04-centroids.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-01-unit-05-cvis.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-01-unit-06-configs.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-02-integration-01-proxy.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-02-integration-02-families.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-02-integration-03-custom-dist.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-03-acceptance-01-dtwb.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-03-acceptance-02-gak.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-03-acceptance-03-lbs.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-03-acceptance-04-symmetric-proxy.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-04-system-01-invalid-inputs.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-04-system-02-data-formats.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-04-system-03-preproc.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-04-system-04-fuzzy.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-04-system-05-hierarchical.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-04-system-06-partitional.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-04-system-07-comparisons.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-04-system-99-rng.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-05-regression-01-proxy.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-05-regression-02-dtwb.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-05-regression-03-family-distmat.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-05-regression-04-family-centroids.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-05-regression-05-custom-dist.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-05-regression-06-cvis.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-05-regression-07-clusterings.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-05-regression-08-comparisons.R |only dtwclust-6.0.0/dtwclust/tests/testthat/test-06-parallel.R | 1 117 files changed, 1218 insertions(+), 793 deletions(-)
Title: Polygon Clipping
Description: R port of Angus Johnson's open source library 'Clipper'. Performs polygon clipping operations (intersection, union, set minus, set difference) for polygonal regions of arbitrary complexity, including holes. Computes offset polygons (spatial buffer zones, morphological dilations, Minkowski dilations) for polygonal regions and polygonal lines. Computes Minkowski Sum of general polygons. There is a function for removing self-intersections from polygon data.
Author: Angus Johnson [aut] ,
Adrian Baddeley [aut, trl, cre],
Kurt Hornik [ctb],
Brian D. Ripley [ctb],
Elliott Sales de Andrade [ctb],
Paul Murrell [ctb],
Ege Rubak [ctb],
Mark Padgham [ctb]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between polyclip versions 1.10-6 dated 2023-09-27 and 1.10-7 dated 2024-07-23
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- NEWS | 20 ++++++++++++++++++++ src/clipper.cpp | 2 +- src/interface.cpp | 16 +++++++++------- 5 files changed, 40 insertions(+), 18 deletions(-)
Title: Stubbing and Setting Expectations on 'HTTP' Requests
Description: Stubbing and setting expectations on 'HTTP' requests.
Includes tools for stubbing 'HTTP' requests, including expected
request conditions and response conditions. Match on
'HTTP' method, query parameters, request body, headers and
more. Can be used for unit tests or outside of a testing
context.
Author: Scott Chamberlain [aut, cre] ,
Aaron Wolen [ctb] ,
rOpenSci [fnd]
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between webmockr versions 0.9.0 dated 2023-02-28 and 1.0.0 dated 2024-07-23
webmockr-0.9.0/webmockr/R/webmockr.R |only webmockr-1.0.0/webmockr/DESCRIPTION | 16 - webmockr-1.0.0/webmockr/MD5 | 121 +++++----- webmockr-1.0.0/webmockr/NAMESPACE | 4 webmockr-1.0.0/webmockr/NEWS.md | 10 webmockr-1.0.0/webmockr/R/HttpLibAdapterRegistry.R | 2 webmockr-1.0.0/webmockr/R/RequestPattern.R | 27 -- webmockr-1.0.0/webmockr/R/Response.R | 8 webmockr-1.0.0/webmockr/R/adapter-httr.R | 5 webmockr-1.0.0/webmockr/R/adapter-httr2.R |only webmockr-1.0.0/webmockr/R/adapter.R | 59 +++- webmockr-1.0.0/webmockr/R/flipswitch.R | 20 - webmockr-1.0.0/webmockr/R/mocking-disk-writing.R | 67 ++++- webmockr-1.0.0/webmockr/R/onload.R | 3 webmockr-1.0.0/webmockr/R/pluck_body.R | 2 webmockr-1.0.0/webmockr/R/to_raise.R | 4 webmockr-1.0.0/webmockr/R/webmockr-opts.R | 1 webmockr-1.0.0/webmockr/R/webmockr-package.R |only webmockr-1.0.0/webmockr/R/wi_th.R | 4 webmockr-1.0.0/webmockr/man/Adapter.Rd | 52 ++++ webmockr-1.0.0/webmockr/man/StubRegistry.Rd | 4 webmockr-1.0.0/webmockr/man/build_httr2_request.Rd |only webmockr-1.0.0/webmockr/man/build_httr2_response.Rd |only webmockr-1.0.0/webmockr/man/enable.Rd | 10 webmockr-1.0.0/webmockr/man/httr2_mock.Rd |only webmockr-1.0.0/webmockr/man/httr_mock.Rd | 6 webmockr-1.0.0/webmockr/man/mocking-disk-writing.Rd | 49 +++- webmockr-1.0.0/webmockr/man/pluck_body.Rd | 2 webmockr-1.0.0/webmockr/man/remove_request_stub.Rd | 4 webmockr-1.0.0/webmockr/man/to_raise.Rd | 4 webmockr-1.0.0/webmockr/man/to_return.Rd | 4 webmockr-1.0.0/webmockr/man/webmockr-package.Rd | 35 ++ webmockr-1.0.0/webmockr/man/wi_th.Rd | 4 webmockr-1.0.0/webmockr/tests/testthat/helper-webmockr.R | 3 webmockr-1.0.0/webmockr/tests/testthat/httr2_obj.rda |only webmockr-1.0.0/webmockr/tests/testthat/httr2_obj_auth.rda |only webmockr-1.0.0/webmockr/tests/testthat/httr_obj.rda |binary webmockr-1.0.0/webmockr/tests/testthat/httr_obj_auth.rda |binary webmockr-1.0.0/webmockr/tests/testthat/test-CrulAdapter.R | 6 webmockr-1.0.0/webmockr/tests/testthat/test-HashCounter.R | 2 webmockr-1.0.0/webmockr/tests/testthat/test-HttpLibAdapaterRegistry.R | 14 + webmockr-1.0.0/webmockr/tests/testthat/test-Httr2Adapter.R |only webmockr-1.0.0/webmockr/tests/testthat/test-HttrAdapter.R | 69 ++--- webmockr-1.0.0/webmockr/tests/testthat/test-RequestPattern.R | 16 - webmockr-1.0.0/webmockr/tests/testthat/test-RequestSignature.R | 8 webmockr-1.0.0/webmockr/tests/testthat/test-Response.R | 19 - webmockr-1.0.0/webmockr/tests/testthat/test-StubRegistry.R | 2 webmockr-1.0.0/webmockr/tests/testthat/test-StubbedRequest.R | 32 +- webmockr-1.0.0/webmockr/tests/testthat/test-b-no-cassette-in-use.R | 2 webmockr-1.0.0/webmockr/tests/testthat/test-flipswitch.R | 12 webmockr-1.0.0/webmockr/tests/testthat/test-onload.R | 8 webmockr-1.0.0/webmockr/tests/testthat/test-remove_request_stub.R | 4 webmockr-1.0.0/webmockr/tests/testthat/test-request_registry.R | 4 webmockr-1.0.0/webmockr/tests/testthat/test-stub_registry.R | 6 webmockr-1.0.0/webmockr/tests/testthat/test-stub_request.R | 6 webmockr-1.0.0/webmockr/tests/testthat/test-stub_requests_crul.R | 16 - webmockr-1.0.0/webmockr/tests/testthat/test-to_raise.R | 6 webmockr-1.0.0/webmockr/tests/testthat/test-to_return.R | 95 ++++++- webmockr-1.0.0/webmockr/tests/testthat/test-to_return_then.R | 10 webmockr-1.0.0/webmockr/tests/testthat/test-to_timeout.R | 4 webmockr-1.0.0/webmockr/tests/testthat/test-uri_regex.R | 56 ++++ webmockr-1.0.0/webmockr/tests/testthat/test-wi_th.R | 47 ++- webmockr-1.0.0/webmockr/tests/testthat/test-within_test_that_blocks.R | 12 webmockr-1.0.0/webmockr/tests/testthat/test-writing-to-disk-write_disk_path.R | 12 webmockr-1.0.0/webmockr/tests/testthat/test-writing-to-disk.R | 73 +++++- webmockr-1.0.0/webmockr/tests/testthat/test-zutils.R | 2 66 files changed, 730 insertions(+), 343 deletions(-)