Title: Plot a Model's Residuals, Response, and Partial Dependence Plots
Description: Plot model surfaces for a wide variety of models
using partial dependence plots and other techniques.
Also plot model residuals and other information on the model.
Author: Stephen Milborrow [aut, cre]
Maintainer: Stephen Milborrow <milbo@sonic.net>
Diff between plotmo versions 3.6.3 dated 2024-02-26 and 3.6.4 dated 2024-08-30
plotmo-3.6.3/plotmo/inst/slowtests/x1 |only plotmo-3.6.4/plotmo/DESCRIPTION | 12 plotmo-3.6.4/plotmo/MD5 | 87 ++--- plotmo-3.6.4/plotmo/NEWS.md | 7 plotmo-3.6.4/plotmo/R/gbm.R | 19 - plotmo-3.6.4/plotmo/inst/doc/modguide.pdf |binary plotmo-3.6.4/plotmo/inst/doc/plotmo-notes.pdf |binary plotmo-3.6.4/plotmo/inst/doc/plotres-notes.pdf |binary plotmo-3.6.4/plotmo/inst/slowtests/make.README.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.c50.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.caret.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.center.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.degree.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.dots.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.fac.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.gbm.R | 127 +++++++ plotmo-3.6.4/plotmo/inst/slowtests/test.gbm.Rout.save | 195 +++++++++++- plotmo-3.6.4/plotmo/inst/slowtests/test.gbm.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.glmnet.Rout.save | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.glmnet.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.glmnetUtils.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.linmod.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.mlr.Rout.save | 16 plotmo-3.6.4/plotmo/inst/slowtests/test.mlr.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.modguide.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.non.earth.Rout.save | 4 plotmo-3.6.4/plotmo/inst/slowtests/test.non.earth.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.parsnip.Rout.save | 26 + plotmo-3.6.4/plotmo/inst/slowtests/test.parsnip.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.partdep.R | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.partdep.Rout.save | 4 plotmo-3.6.4/plotmo/inst/slowtests/test.partdep.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.partykit.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.plotmo.Rout.save | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.plotmo.args.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.plotmo.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.plotmo.dots.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.plotmo.x.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.plotmo3.Rout.save | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.plotmo3.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.plotres.Rout.save | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.plotres.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.pre.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.printcall.bat | 2 plotmo-3.6.4/plotmo/inst/slowtests/test.unusual.vars.bat | 2 45 files changed, 444 insertions(+), 115 deletions(-)
Title: Genome Interval Arithmetic
Description: Read and manipulate genome intervals and signals. Provides
functionality similar to command-line tool suites within R, enabling
interactive analysis and visualization of genome-scale data. Riemondy
et al. (2017) <doi:10.12688/f1000research.11997.1>.
Author: Jay Hesselberth [aut] ,
Kent Riemondy [aut, cre] ,
RNA Bioscience Initiative [fnd, cph]
Maintainer: Kent Riemondy <kent.riemondy@gmail.com>
Diff between valr versions 0.8.1 dated 2024-04-22 and 0.8.2 dated 2024-08-30
DESCRIPTION | 14 +++++++------- MD5 | 18 +++++++++--------- NEWS.md | 6 ++++++ R/bed_map.r | 2 +- R/bed_partition.r | 2 +- README.md | 18 ++++++++++++------ build/vignette.rds |binary inst/doc/valr.html | 14 +++++++------- man/bed_map.Rd | 2 +- man/bed_partition.Rd | 2 +- 10 files changed, 45 insertions(+), 33 deletions(-)
Title: A Pseudo-Random Number Generator
Description: Provides functions for generating pseudo-random numbers that follow a uniform distribution [0,1]. Randomness tests were conducted using the National Institute of Standards and Technology test suite<https://csrc.nist.gov/pubs/sp/800/22/r1/upd1/final>, along with additional tests. The sequence generated depends on the initial values and parameters. The package includes a linear congruence map as the decision map and three chaotic maps to generate the pseudo-random sequence, which follow a uniform distribution. Other distributions can be generated from the uniform distribution using the Inversion Principle Method and BOX-Muller transformation. Small perturbations in seed values result in entirely different sequences of numbers due to the sensitive nature of the maps being used. The chaotic nature of the maps helps achieve randomness in the generator. Additionally, the generator is capable of producing random bits.
Author: Sajad Ahmad Mir [aut, cre] ,
Dr. Puneet Sharma [aut]
Maintainer: Sajad Ahmad Mir <maths.acad24@gmail.com>
Diff between PRNG versions 0.0.2.1 dated 2024-08-17 and 0.0.2.1.1 dated 2024-08-30
PRNG-0.0.2.1.1/PRNG/DESCRIPTION | 10 +-- PRNG-0.0.2.1.1/PRNG/MD5 | 21 +++--- PRNG-0.0.2.1.1/PRNG/NAMESPACE | 12 +-- PRNG-0.0.2.1.1/PRNG/R/PRNG.R | 86 +++++++++++++------------- PRNG-0.0.2.1.1/PRNG/README.md |only PRNG-0.0.2.1.1/PRNG/man/prbits.Rd |only PRNG-0.0.2.1.1/PRNG/man/prcauchy.Rd |only PRNG-0.0.2.1.1/PRNG/man/prexp.Rd |only PRNG-0.0.2.1.1/PRNG/man/prnorm.Rd |only PRNG-0.0.2.1.1/PRNG/man/prunf.Rd |only PRNG-0.0.2.1.1/PRNG/man/stime.Rd |only PRNG-0.0.2.1.1/PRNG/tests/testthat/test-all.R | 36 +++++----- PRNG-0.0.2.1/PRNG/man/rbits.Rd |only PRNG-0.0.2.1/PRNG/man/rcauchy.Rd |only PRNG-0.0.2.1/PRNG/man/rexp.Rd |only PRNG-0.0.2.1/PRNG/man/rnorm.Rd |only PRNG-0.0.2.1/PRNG/man/runf.Rd |only PRNG-0.0.2.1/PRNG/man/time.Rd |only 18 files changed, 83 insertions(+), 82 deletions(-)
Title: Generating Various Numerical Representation Schemes for Protein
Sequences
Description: Comprehensive toolkit for generating various numerical
features of protein sequences described in Xiao et al. (2015)
<DOI:10.1093/bioinformatics/btv042>. For full functionality,
the software 'ncbi-blast+' is needed, see
<https://blast.ncbi.nlm.nih.gov/doc/blast-help/downloadblastdata.html>
for more information.
Author: Nan Xiao [aut, cre] ,
Qing-Song Xu [aut],
Dong-Sheng Cao [aut],
Sebastian Mueller [ctb]
Maintainer: Nan Xiao <me@nanx.me>
Diff between protr versions 1.7-2 dated 2024-07-21 and 1.7-3 dated 2024-08-30
DESCRIPTION | 6 +- MD5 | 17 +++--- NAMESPACE | 1 NEWS.md | 11 +++ R/par-01-parSeqSim.R | 12 ++-- R/utils.R |only inst/doc/protr.Rmd | 4 - inst/doc/protr.html | 144 +++++++++++++++++++++++++-------------------------- man/twoSeqSim.Rd | 2 vignettes/protr.Rmd | 4 - 10 files changed, 110 insertions(+), 91 deletions(-)
Title: Generalized Latent Markov Models
Description: Latent Markov models for longitudinal continuous and categorical data. See Bartolucci, Pandolfi, Pennoni (2017)<doi:10.18637/jss.v081.i04>.
Author: Francesco Bartolucci [aut, cre],
Silvia Pandolfi [aut],
Fulvia Pennoni [aut],
Alessio Farcomeni [ctb],
Alessio Serafini [ctb]
Maintainer: Francesco Bartolucci <francesco.bartolucci@unipg.it>
Diff between LMest versions 3.1.2 dated 2023-08-27 and 3.2.0 dated 2024-08-30
LMest-3.1.2/LMest/man/drawLMbasic.Rd |only LMest-3.1.2/LMest/man/drawLMbasiccont.Rd |only LMest-3.1.2/LMest/man/drawLMlatent.Rd |only LMest-3.1.2/LMest/man/drawLMlatentcont.Rd |only LMest-3.1.2/LMest/man/drawLMmixed.Rd |only LMest-3.2.0/LMest/DESCRIPTION | 8 LMest-3.2.0/LMest/MD5 | 139 ++--- LMest-3.2.0/LMest/NAMESPACE | 10 LMest-3.2.0/LMest/R/bootstrap.R | 97 ++-- LMest-3.2.0/LMest/R/complk_cont.R | 45 + LMest-3.2.0/LMest/R/complk_cont_miss.R | 17 LMest-3.2.0/LMest/R/complk_covmanifest.cont.R | 23 LMest-3.2.0/LMest/R/draw.R | 547 ++++++++++------------- LMest-3.2.0/LMest/R/draw_lm_basic_cont.R | 3 LMest-3.2.0/LMest/R/est_multilogit.R | 6 LMest-3.2.0/LMest/R/est_old.R | 2 LMest-3.2.0/LMest/R/functions.R | 25 - LMest-3.2.0/LMest/R/lk_comp_latent.R | 3 LMest-3.2.0/LMest/R/lk_comp_latent_cont.R | 19 LMest-3.2.0/LMest/R/lk_obs_cont.R | 189 ++++--- LMest-3.2.0/LMest/R/lk_obs_cont_miss.R | 62 +- LMest-3.2.0/LMest/R/lk_obs_covmanifest.cont.R | 59 +- LMest-3.2.0/LMest/R/lk_obs_latent_cont.R | 39 - LMest-3.2.0/LMest/R/lmbasic.R | 19 LMest-3.2.0/LMest/R/lmbasic.cont.R | 107 ++-- LMest-3.2.0/LMest/R/lmcovlatent.R | 169 +++---- LMest-3.2.0/LMest/R/lmcovlatent.cont.R | 214 ++++---- LMest-3.2.0/LMest/R/lmcovmanifest.R | 3 LMest-3.2.0/LMest/R/lmcovmanifest.cont.R | 89 +-- LMest-3.2.0/LMest/R/lmest.R | 8 LMest-3.2.0/LMest/R/lmestCont.R | 29 - LMest-3.2.0/LMest/R/lmestDecoding.R | 32 + LMest-3.2.0/LMest/R/lmestMc.R | 11 LMest-3.2.0/LMest/R/lmestSearch.R | 190 +++---- LMest-3.2.0/LMest/R/lmmixed.R | 2 LMest-3.2.0/LMest/R/marg_param.R | 2 LMest-3.2.0/LMest/R/mcbasic.R | 19 LMest-3.2.0/LMest/R/mccov.R | 8 LMest-3.2.0/LMest/R/plot.LMbasic.R | 8 LMest-3.2.0/LMest/R/plot.LMlatent.R | 14 LMest-3.2.0/LMest/R/print.R | 98 ++-- LMest-3.2.0/LMest/R/prob_multilogit.R | 23 LMest-3.2.0/LMest/R/prob_post_cov.R | 6 LMest-3.2.0/LMest/R/prob_post_cov_cont.R | 88 +-- LMest-3.2.0/LMest/R/se.R | 363 ++++++++------- LMest-3.2.0/LMest/R/sq.R | 2 LMest-3.2.0/LMest/R/stationary.R | 2 LMest-3.2.0/LMest/R/summary.LMlatent.R | 20 LMest-3.2.0/LMest/R/summary.LMlatentcont.R | 16 LMest-3.2.0/LMest/R/summary.LMmanifest.R | 3 LMest-3.2.0/LMest/R/summary.LMmanifestcont.R | 3 LMest-3.2.0/LMest/R/summary.MCcov.R | 6 LMest-3.2.0/LMest/R/summary.MClatent.R | 8 LMest-3.2.0/LMest/build/vignette.rds |binary LMest-3.2.0/LMest/data/data_employment_sim.rda |only LMest-3.2.0/LMest/data/data_heart_sim.rda |only LMest-3.2.0/LMest/data/data_market_sim.rda |only LMest-3.2.0/LMest/inst/doc/vignetteLMest.R | 20 LMest-3.2.0/LMest/inst/doc/vignetteLMest.Rmd | 211 ++++++-- LMest-3.2.0/LMest/inst/doc/vignetteLMest.html | 268 ++++++++--- LMest-3.2.0/LMest/man/LMbasic-class.Rd | 8 LMest-3.2.0/LMest/man/LMest-package.Rd | 2 LMest-3.2.0/LMest/man/bootstrap.Rd | 5 LMest-3.2.0/LMest/man/data_employment_sim.Rd |only LMest-3.2.0/LMest/man/data_heart_sim.Rd |only LMest-3.2.0/LMest/man/data_market_sim.Rd |only LMest-3.2.0/LMest/man/draw.Rd |only LMest-3.2.0/LMest/man/draw_lm_basic.Rd | 2 LMest-3.2.0/LMest/man/draw_lm_basic_cont.Rd | 2 LMest-3.2.0/LMest/man/draw_lm_cov_latent.Rd | 2 LMest-3.2.0/LMest/man/draw_lm_cov_latent_cont.Rd | 2 LMest-3.2.0/LMest/man/draw_lm_mixed.Rd | 2 LMest-3.2.0/LMest/man/lmest.Rd | 32 + LMest-3.2.0/LMest/man/lmestCont.Rd | 6 LMest-3.2.0/LMest/src/LMest_init.c | 6 LMest-3.2.0/LMest/src/prodnormw.f |only LMest-3.2.0/LMest/vignettes/vignetteLMest.Rmd | 211 ++++++-- 77 files changed, 2052 insertions(+), 1582 deletions(-)
Title: A Method to Download Department of Education College Scorecard
Data
Description: A method to download Department of Education College
Scorecard data using the public API
<https://collegescorecard.ed.gov/data/data-documentation/>. It is based on
the 'dplyr' model of piped commands to select and filter data in a
single chained function call. An API key from the U.S. Department of
Education is required.
Author: Benjamin Skinner [aut, cre]
Maintainer: Benjamin Skinner <bskinner@neh.gov>
Diff between rscorecard versions 0.28.1 dated 2024-05-28 and 0.29.0 dated 2024-08-30
DESCRIPTION | 12 ++++----- MD5 | 12 ++++----- NEWS.md | 72 ++++++++++++++++++++++++++++-------------------------- R/select_year.R | 2 - R/sysdata.rda |binary man/rscorecard.Rd | 2 - man/sc_year.Rd | 2 - 7 files changed, 53 insertions(+), 49 deletions(-)
Title: Create Simple Packages Which Do not Upset R Package Checks
Description: Provides a function kitten() which creates cute little
packages which pass R package checks. This sets it apart from
package.skeleton() which it calls, and which leaves imperfect files
behind. As this is not exactly helpful for beginners, kitten() offers
an alternative. Unit test support can be added via the 'tinytest'
package (if present), and documentation-creation support can be
added via 'roxygen2' (if present).
Author: Dirk Eddelbuettel [aut, cre]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between pkgKitten versions 0.2.3 dated 2023-03-11 and 0.2.4 dated 2024-08-30
ChangeLog | 47 +++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 14 ++++++------ MD5 | 17 +++++++------- R/pkgKitten.R | 31 ++++++++++++++++++++------- README.md | 2 - inst/NEWS.Rd | 11 +++++++++ inst/replacements/hello.R | 2 - inst/replacements/test_hello.R |only inst/skel/R.gitignore | 37 ++++++++++++++++++++++++++++++++ inst/skel/dot.Rbuildignore | 1 10 files changed, 139 insertions(+), 23 deletions(-)
Title: Local Principal Curve Methods
Description: Fitting multivariate data patterns with local principal curves, including tools for data compression (projection) and measuring goodness-of-fit; with some additional functions for mean shift clustering. See Einbeck, Tutz and Evers (2005) <doi:10.1007/s11222-005-4073-8> and Ameijeiras-Alonso and Einbeck (2023) <doi:10.1007/s11634-023-00575-1>.
Author: Jochen Einbeck [aut, cre],
Ludger Evers [aut]
Maintainer: Jochen Einbeck <jochen.einbeck@durham.ac.uk>
Diff between LPCM versions 0.47-4 dated 2024-03-06 and 0.47-6 dated 2024-08-30
DESCRIPTION | 17 ++++--- MD5 | 17 ++++--- NEWS.md | 8 +++ R/ms.rep.r | 117 ++++++++++++++++++++++++++++++++++++++-------------- build |only man/LPCM-package.Rd | 4 - man/followx.Rd | 2 man/ms.Rd | 4 - man/ms.rep.Rd | 20 ++++---- man/plot.lpc.Rd | 2 10 files changed, 132 insertions(+), 59 deletions(-)
Title: Nonparametrics with Clustered Binary and Multinomial Data
Description: Implements non-parametric analyses for clustered
binary and multinomial data. The elements of the cluster are assumed
exchangeable, and identical joint distribution (also known as marginal
compatibility, or reproducibility) is assumed for clusters of different
sizes. A trend test based on stochastic ordering is implemented.
Szabo A, George EO. (2010) <doi:10.1093/biomet/asp077>;
George EO, Cheon K, Yuan Y, Szabo A (2016) <doi:10.1093/biomet/asw009>.
Author: Aniko Szabo [aut, cre, cph]
Maintainer: Aniko Szabo <aszabo@mcw.edu>
Diff between CorrBin versions 1.6.1 dated 2023-09-29 and 1.6.2 dated 2024-08-30
DESCRIPTION | 16 ++++++++-------- MD5 | 26 +++++++++++++------------- NAMESPACE | 7 +++---- R/CBData.R | 18 +++++++++++------- R/CMData.R | 8 ++++---- R/ExchMultinomial.R | 6 +++--- R/aaa-generics1.R | 4 ++-- inst/doc/CorrBinVignette.pdf |binary man/GEE.trend.test.Rd | 8 +++++--- man/jointprobs.Rd | 4 ++-- man/mc.est.Rd | 4 ++-- man/multinom.gen.Rd | 2 +- man/read.CMData.Rd | 2 +- src/ReprodCalcs.c | 24 ++++++++++++------------ 14 files changed, 67 insertions(+), 62 deletions(-)
Title: Scrape and Analyze 'Goodreads' Book Data
Description: A comprehensive toolkit for scraping and analyzing book data from <https://www.goodreads.com/>. This package provides functions to search for books, scrape book details and reviews, perform sentiment analysis on reviews, and conduct topic modeling. It's designed for researchers, data analysts, and book enthusiasts who want to gain insights from 'Goodreads' data.
Author: Chao Liu [aut, cre, cph]
Maintainer: Chao Liu <chaoliu@cedarville.edu>
Diff between Goodreader versions 0.1.0 dated 2024-08-27 and 0.1.1 dated 2024-08-30
DESCRIPTION | 12 ++++++------ MD5 | 4 ++-- inst/doc/Intro_to_Goodreader.html | 6 +++--- 3 files changed, 11 insertions(+), 11 deletions(-)
Title: Graphs for Correspondence Analysis
Description: Readable, complete and pretty graphs for correspondence analysis made
with 'FactoMineR'. They can be rendered as interactive 'HTML' plots, showing useful
informations at mouse hover. The interest is not mainly visual but statistical:
it helps the reader to keep in mind the data contained in the cross-table or Burt
table while reading the correspondence analysis, thus preventing over-interpretation.
Most graphs are made with 'ggplot2', which means that you can use the + syntax to
manually add as many graphical pieces you want, or change theme elements. 3D
graphs are made with 'plotly'.
Author: Brice Nocenti [aut, cre]
Maintainer: Brice Nocenti <brice.nocenti@gmail.com>
Diff between ggfacto versions 0.3.0 dated 2024-03-08 and 0.3.1 dated 2024-08-30
DESCRIPTION | 8 ++--- MD5 | 14 ++++---- NEWS.md | 67 ++++++++++++++++++++++-------------------- R/geometrical_data_analysis.R | 62 +++++++++++++++++++++----------------- man/ggca.Rd | 8 ++--- man/ggmca.Rd | 8 ++--- man/ggmca_initial_dims.Rd | 4 +- man/ggmca_with_base_ref.Rd | 4 +- 8 files changed, 94 insertions(+), 81 deletions(-)
Title: Simulation of Plot Errors and Phenotypes in Plant Breeding Field
Trials
Description: Simulates plot data in multi-environment field trials with one or more traits.
Its core function generates plot errors that capture spatial trend, random error (noise),
and extraneous variation, which are combined at a user-defined ratio.
Phenotypes can be generated by combining the plot errors with simulated genetic values that capture
genotype-by-environment (GxE) interaction using wrapper functions for the R package `AlphaSimR`.
Author: Christian Werner [aut, cre] ,
Daniel Tolhurst [aut] ,
Jon Bancic [ctb]
Maintainer: Christian Werner <werner.christian@proton.me>
Diff between FieldSimR versions 1.3.0 dated 2024-04-03 and 1.4.0 dated 2024-08-30
DESCRIPTION | 24 +- MD5 | 60 +++-- NAMESPACE | 6 NEWS.md | 20 + R/compound_symmetry_gxe.R | 14 - R/data.R | 2 R/field_trial_error.R | 6 R/make_phenotypes.R | 204 +++++++++++++++--- R/multiplicative_gxe.R | 107 ++++++--- R/plot_effects.R | 144 +++++++++--- R/random_correlation_matrix.R | 349 ++++++++++++++++++++++++++++--- R/random_diagonal_matrix.R |only R/sample_met.R |only R/unstructured_gxe.R | 15 - data/gv_df_unstr.rda |binary inst/doc/compound_symmetry_GxE_demo.html | 16 - inst/doc/spatial_variation_demo.html | 26 +- inst/doc/unstructured_GxE_demo.html | 28 +- man/compsym_asr_output.Rd | 4 man/group_cor_mat.Rd |only man/gv_df_unstr.Rd | 2 man/make_phenotypes.Rd | 29 +- man/multi_asr_input.Rd | 6 man/multi_asr_output.Rd | 14 - man/plot_hist.Rd |only man/plot_matrix.Rd | 7 man/qq_plot.Rd | 5 man/rand_cor_mat.Rd | 25 +- man/rand_diag_mat.Rd |only man/sample_met.Rd |only man/sample_variogram.Rd | 2 man/skew_diag_mat.Rd |only man/struc_cor_mat.Rd |only man/theoretical_variogram.Rd | 2 man/unstr_asr_output.Rd | 8 35 files changed, 873 insertions(+), 252 deletions(-)
Title: Statistical Methods for Graphs
Description: Contains statistical methods to analyze graphs, such as graph parameter estimation,
model selection based on the Graph Information Criterion, statistical tests to discriminate two or more populations of graphs,
correlation between graphs, and clustering of graphs.
References: Takahashi et al. (2012) <doi:10.1371/journal.pone.0049949>, Fujita et al. (2017) <doi:10.3389/fnins.2017.00066>,
Fujita et al. (2017) <doi:10.1016/j.csda.2016.11.016>, Fujita et al. (2019) <doi:10.1093/comnet/cnz028>.
Author: Grover E. Castro Guzman [aut],
Diogo R. da Costa [aut],
Taiane C. Ramos [aut],
Suzana S. Santos [aut],
Eduardo S. Lira [aut],
Andre Fujita [aut, cre]
Maintainer: Andre Fujita <andrefujita@usp.br>
Diff between statGraph versions 1.0.4 dated 2024-08-23 and 1.0.5 dated 2024-08-30
DESCRIPTION | 8 ++-- MD5 | 38 ++++++++++---------- R/GIC.R | 9 ++-- R/anogva.R | 3 + R/graph.acf.R | 3 + R/graph.cem.R | 14 ++++--- R/graph.cor.test.R | 4 +- R/graph.dist.R | 21 +++++++---- R/graph.entropy.R | 6 ++- R/graph.hclust.R | 5 +- R/graph.kmeans.R | 11 +++--- R/graph.model.selection.R | 9 +++- R/graph.models.R | 75 +++++++++++++++++++++++------------------ R/graph.mult.scaling.R | 3 + R/graph.param.estimator.R | 43 ++++++++++++----------- R/graph.spectral.density.R | 37 +++++++------------- R/graph.takahashi.test.R | 6 +-- R/sp.anogva.R | 13 +++---- R/summary.statGraph.R | 82 ++++++++++++++++++++++----------------------- R/utils.R | 18 ++++----- 20 files changed, 213 insertions(+), 195 deletions(-)
Title: Construct Process Maps Using Event Data
Description: Visualize event logs using directed graphs, i.e. process maps. Part of the 'bupaR' framework.
Author: Gert Janssenswillen [aut, cre],
Gerard van Hulzen [ctb],
Benoît Depaire [ctb],
Felix Mannhardt [ctb],
Thijs Beuving [ctb],
urvikalia [ctb],
Hasselt University [cph]
Maintainer: Gert Janssenswillen <gert.janssenswillen@uhasselt.be>
Diff between processmapR versions 0.5.4 dated 2024-07-15 and 0.5.5 dated 2024-08-30
processmapR-0.5.4/processmapR/inst/htmlwidgets/processanimateR.js |only processmapR-0.5.4/processmapR/inst/htmlwidgets/processanimateR.yaml |only processmapR-0.5.5/processmapR/DESCRIPTION | 6 +++--- processmapR-0.5.5/processmapR/MD5 | 10 +++++----- processmapR-0.5.5/processmapR/R/render_map.R | 4 ++-- processmapR-0.5.5/processmapR/inst/doc/processmapr.html | 4 ++-- processmapR-0.5.5/processmapR/inst/htmlwidgets/processmapR.js |only processmapR-0.5.5/processmapR/inst/htmlwidgets/processmapR.yaml |only 8 files changed, 12 insertions(+), 12 deletions(-)
Title: Multivariate Normal and t Distributions
Description: Computes multivariate normal and t probabilities, quantiles, random deviates,
and densities. Log-likelihoods for multivariate Gaussian models and Gaussian copulae
parameterised by Cholesky factors of covariance or precision matrices are implemented
for interval-censored and exact data, or a mix thereof. Score functions for these
log-likelihoods are available. A class representing multiple lower triangular matrices
and corresponding methods are part of this package.
Author: Alan Genz [aut],
Frank Bretz [aut],
Tetsuhisa Miwa [aut],
Xuefei Mi [aut],
Friedrich Leisch [ctb],
Fabian Scheipl [ctb],
Bjoern Bornkamp [ctb] ,
Martin Maechler [ctb] ,
Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mvtnorm versions 1.2-6 dated 2024-08-17 and 1.3-0 dated 2024-08-30
DESCRIPTION | 8 MD5 | 42 NAMESPACE | 19 R/interface.R |only R/lpmvnorm.R | 432 +++++ R/ltMatrices.R | 559 ++----- build/partial.rdb |binary build/vignette.rds |binary cleanup | 3 inst/NEWS.Rd | 31 inst/doc/MVT_Rnews.pdf |binary inst/doc/lmvnorm_src.R | 536 +++++- inst/doc/lmvnorm_src.Rnw | 3173 +++++++++++++++++++++++++++++----------- inst/doc/lmvnorm_src.pdf |binary inst/litdb.bib | 11 man/interface.Rd |only man/ltMatrices.Rd | 39 src/lpmvnorm.c | 5 src/ltMatrices.c | 31 tests/regtest-aperm.R |only tests/regtest_mvnorm.R |only vignettes/litdb.bib | 11 vignettes/lmvnorm_src.Rnw | 3173 +++++++++++++++++++++++++++++----------- vignettes/lmvnorm_src.Rout.save | 454 ++++- 24 files changed, 6271 insertions(+), 2256 deletions(-)
Title: Beautiful Colour Maps for Oceanography
Description: Perceptually uniform palettes for commonly used
variables in oceanography as functions taking an integer
and producing character vectors of colours.
See Thyng, K.M., Greene, C.A., Hetland, R.D., Zimmerle, H.M.
and S.F. DiMarco (2016) <doi:10.5670/oceanog.2016.66> for
the guidelines adhered to when creating the palettes.
Author: Kristen Thyng [aut] ,
Clark Richards [ctb] ,
Ilja Kocken [ctb] ,
Ivan Krylov [cre]
Maintainer: Ivan Krylov <ikrylov@disroot.org>
Diff between cmocean versions 0.3-1 dated 2020-11-18 and 0.3-2 dated 2024-08-30
DESCRIPTION | 29 ++++---- MD5 | 20 +++--- README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 9 +- inst/doc/cmocean.R | 2 inst/doc/cmocean.Rmd | 4 - inst/doc/cmocean.html | 164 ++++++++++++++++++++++++-------------------------- man/cmocean.Rd | 5 - vignettes/cmocean.Rmd | 4 - 11 files changed, 119 insertions(+), 120 deletions(-)
Title: Generic PK/PD Simulation Platform CAMPSIS
Description: A generic, easy-to-use and intuitive
pharmacokinetic/pharmacodynamic (PK/PD) simulation platform based on R
packages 'rxode2' and 'mrgsolve'. CAMPSIS provides an abstraction
layer over the underlying processes of writing a PK/PD model,
assembling a custom dataset and running a simulation. CAMPSIS has a
strong dependency to the R package 'campsismod', which allows to
read/write a model from/to files and adapt it further on the fly in
the R environment. Package 'campsis' allows the user to assemble a
dataset in an intuitive manner. Once the user’s dataset is ready, the
package is in charge of preparing the simulation, calling 'rxode2' or
'mrgsolve' (at the user's choice) and returning the results, for the
given model, dataset and desired simulation settings.
Author: Nicolas Luyckx [aut, cre]
Maintainer: Nicolas Luyckx <nicolas.luyckx@calvagone.com>
Diff between campsis versions 1.5.3 dated 2024-07-01 and 1.5.4 dated 2024-08-30
DESCRIPTION | 24 +++++++++---------- MD5 | 20 ++++++++-------- NEWS.md | 5 ++++ R/dataset.R | 10 ++++---- R/simulate.R | 11 +++++++- R/simulate_preprocess.R | 2 - README.md | 7 ++--- man/Dataset.Rd | 4 ++- man/simulate.Rd | 10 ++++---- tests/testthat/testSimulateBolus.R | 17 +++++++++++++ tests/testthat/testSimulateScenarios.R | 41 +++++++++++++++++++++++++++++++++ 11 files changed, 112 insertions(+), 39 deletions(-)
Title: Multiple Data Analysis Tools for Property Listing Tasks
Description: Application to estimate statistical values using properties provided by a group of individuals to describe
concepts using 'shiny'. It estimates the underlying distribution to generate new descriptive words
Canessa et al. (2023) <doi:10.3758/s13428-022-01811-w>, applies a new clustering model, and uses simulations to estimate
the probability that two persons describe the same words based on their descriptions
Canessa et al. (2022) <doi:10.3758/s13428-022-02030-z>.
Author: Sebastian Moreno [aut, cre],
Cristobal Heredia [aut],
Enrique Canessa [ths],
Sergio Chaigneau [ths]
Maintainer: Sebastian Moreno <sebastian.moreno.araya@gmail.com>
Diff between WordListsAnalytics versions 0.2.3 dated 2024-07-01 and 0.2.4 dated 2024-08-30
DESCRIPTION | 14 ++--- MD5 | 11 ++- R/PLT_server.R | 130 +++++++++++++++++++++++++++++++++++++++-------- R/PLT_ui.R | 4 + R/fun_tca_calculator.R |only R/fun_threshold_graph.R | 3 - R/tab_cosine_distance.R |only R/tab_t_c_a_calculator.R |only 8 files changed, 128 insertions(+), 34 deletions(-)
More information about WordListsAnalytics at CRAN
Permanent link
Title: Multivariate Ordinal Regression Models
Description: A flexible framework for fitting multivariate
ordinal regression models with composite likelihood methods. Methodological details are given in Hirk, Hornik, Vana (2020) <doi:10.18637/jss.v093.i04>.
Author: Rainer Hirk [aut],
Kurt Hornik [aut] ,
Laura Vana [aut, cre] ,
Alan Gentz [ctb]
Maintainer: Laura Vana <laura.vana@tuwien.ac.at>
Diff between mvord versions 1.2.4 dated 2024-07-07 and 1.2.5 dated 2024-08-30
DESCRIPTION | 29 ++- MD5 | 55 ++--- NEWS | 6 R/fit_fast.R | 1 R/predict.R | 346 +++++++++++++++++++++--------------- build/partial.rdb |binary build/vignette.rds |binary data/data_cr.rda |binary data/data_cr_panel.rda |binary data/data_mvord.rda |binary data/data_mvord2.rda |binary data/data_mvord_panel.rda |binary data/data_mvord_toy.rda |binary data/essay_data.rda |binary inst/doc/vignette_mvord.R | 44 ++-- inst/doc/vignette_mvord.Rnw | 11 - inst/doc/vignette_mvord.pdf |binary inst/doc/vignette_mvord2.R | 41 +++- inst/doc/vignette_mvord2.Rmd | 56 ++++- inst/doc/vignette_mvord2.html | 200 ++++++++++++-------- man/joint_probabilities.Rd | 21 +- man/marginal_predict.Rd | 17 - man/predict.mvord.Rd | 16 - tests/check_methods.R | 9 tests/check_toy_example.R | 13 - vignettes/jp.rda |binary vignettes/res_cor_logit_3raters.rda |only vignettes/vignette_mvord.Rnw | 11 - vignettes/vignette_mvord2.Rmd | 56 ++++- 29 files changed, 569 insertions(+), 363 deletions(-)
Title: A Collection of DIF Tests for Multistage Tests
Description: A collection of statistical tests for the detection of differential
item functioning (DIF) in multistage tests. Methods entail logistic regression,
an adaptation of the simultaneous item bias test (SIBTEST), and various score-based tests.
The presented tests provide itemwise test for DIF along categorical, ordinal or metric covariates. Methods for uniform and non-uniform
DIF effects are available depending on which method is used.
Author: Rudolf Debelak [aut, cre],
Dries Debeer [aut],
Sebastian Appelbaum [ctb],
Mark J. Gierl [ctb]
Maintainer: Rudolf Debelak <rudolf.debelak@gmail.com>
Diff between mstDIF versions 0.1.7 dated 2022-12-02 and 0.1.8 dated 2024-08-30
DESCRIPTION | 8 MD5 | 18 NEWS.md | 4 R/mstDIF-package.R | 7 build/vignette.rds |binary inst/doc/mstDIF.R | 2 inst/doc/mstDIF.html | 918 ++++++++++++++++++++++++------------------------- man/mstDIF-package.Rd | 16 tests/Rsctest.R | 18 tests/testthat/test1.R | 220 +++++------ 10 files changed, 621 insertions(+), 590 deletions(-)
Title: A Grammar of Graphics for Comparative Genomics
Description: An extension of 'ggplot2' for creating complex genomic
maps. It builds on the power of 'ggplot2' and 'tidyverse' adding new 'ggplot2'-style
geoms & positions and 'dplyr'-style verbs to manipulate the underlying data. It
implements a layout concept inspired by 'ggraph' and introduces tracks to bring
tidiness to the mess that is genomics data.
Author: Thomas Hackl [aut, cre],
Markus J. Ankenbrand [aut],
Bart van Adrichem [aut],
Kristina Haslinger [ctb, sad]
Maintainer: Thomas Hackl <t.hackl@rug.nl>
Diff between gggenomes versions 1.0.0 dated 2024-06-28 and 1.0.1 dated 2024-08-30
gggenomes-1.0.0/gggenomes/tests/find_missing.R |only gggenomes-1.0.1/gggenomes/DESCRIPTION | 6 gggenomes-1.0.1/gggenomes/MD5 | 21 +-- gggenomes-1.0.1/gggenomes/README.md | 2 gggenomes-1.0.1/gggenomes/build/partial.rdb |binary gggenomes-1.0.1/gggenomes/build/vignette.rds |binary gggenomes-1.0.1/gggenomes/inst/doc/emales.html | 139 +++++++++------------- gggenomes-1.0.1/gggenomes/inst/doc/flip.html | 106 ++++++++-------- gggenomes-1.0.1/gggenomes/inst/doc/gggenomes.R | 3 gggenomes-1.0.1/gggenomes/inst/doc/gggenomes.Rmd | 3 gggenomes-1.0.1/gggenomes/inst/doc/gggenomes.pdf |binary gggenomes-1.0.1/gggenomes/vignettes/gggenomes.Rmd | 3 12 files changed, 142 insertions(+), 141 deletions(-)
More information about imputeMissings at CRAN
Permanent link
Title: User-Friendly Tables with Color Helpers for Data Exploration
Description: Make it easy to deal with multiple cross-tables in data exploration, by
creating them, manipulating them, and adding color helpers to highlight
important informations (differences from totals, comparisons between lines or
columns, contributions to variance, confidence intervals, odds ratios, etc.).
All functions are pipe-friendly and render data frames which can be easily
manipulated. In the same time, time-taking operations are done with 'data.table'
to go faster with big dataframes. Tables can be exported with formats and colors
to 'Excel', plot and html.
Author: Brice Nocenti [aut, cre]
Maintainer: Brice Nocenti <brice.nocenti@gmail.com>
Diff between tabxplor versions 1.1.3 dated 2024-03-08 and 1.2.0 dated 2024-08-30
tabxplor-1.1.3/tabxplor/man/get_diff_type.data.frame.Rd |only tabxplor-1.1.3/tabxplor/man/get_diff_type.default.Rd |only tabxplor-1.1.3/tabxplor/man/get_diff_type.tabxplor_fmt.Rd |only tabxplor-1.2.0/tabxplor/DESCRIPTION | 29 tabxplor-1.2.0/tabxplor/MD5 | 83 tabxplor-1.2.0/tabxplor/NAMESPACE | 16 tabxplor-1.2.0/tabxplor/NEWS.md | 11 tabxplor-1.2.0/tabxplor/R/fmt_class.R | 516 tabxplor-1.2.0/tabxplor/R/jmvtab.b.R |only tabxplor-1.2.0/tabxplor/R/jmvtab.h.R |only tabxplor-1.2.0/tabxplor/R/tab.R | 955 + tabxplor-1.2.0/tabxplor/R/tab_classes.R | 856 + tabxplor-1.2.0/tabxplor/R/tab_xl.R | 7920 +++++++------- tabxplor-1.2.0/tabxplor/R/utils.R | 179 tabxplor-1.2.0/tabxplor/README.md | 112 tabxplor-1.2.0/tabxplor/build/vignette.rds |binary tabxplor-1.2.0/tabxplor/inst/doc/tabxplor.R | 6 tabxplor-1.2.0/tabxplor/inst/doc/tabxplor.Rmd | 731 - tabxplor-1.2.0/tabxplor/inst/doc/tabxplor.html | 2524 ++-- tabxplor-1.2.0/tabxplor/inst/i18n |only tabxplor-1.2.0/tabxplor/inst/tab.css |only tabxplor-1.2.0/tabxplor/man/fmt.Rd | 40 tabxplor-1.2.0/tabxplor/man/format.tabxplor_fmt.Rd | 5 tabxplor-1.2.0/tabxplor/man/get_ref_type.data.frame.Rd |only tabxplor-1.2.0/tabxplor/man/get_ref_type.default.Rd |only tabxplor-1.2.0/tabxplor/man/get_ref_type.tabxplor_fmt.Rd |only tabxplor-1.2.0/tabxplor/man/jmvtab.Rd |only tabxplor-1.2.0/tabxplor/man/mutate.tabxplor_fmt.Rd | 2 tabxplor-1.2.0/tabxplor/man/new_fmt.Rd | 82 tabxplor-1.2.0/tabxplor/man/print.tabxplor_grouped_tab.Rd | 6 tabxplor-1.2.0/tabxplor/man/print.tabxplor_tab.Rd | 6 tabxplor-1.2.0/tabxplor/man/set_display.data.frame.Rd |only tabxplor-1.2.0/tabxplor/man/set_display.default.Rd |only tabxplor-1.2.0/tabxplor/man/set_display.tabxplor_fmt.Rd |only tabxplor-1.2.0/tabxplor/man/tab.Rd | 538 tabxplor-1.2.0/tabxplor/man/tab_ci.Rd | 6 tabxplor-1.2.0/tabxplor/man/tab_get_wrapped_dimensions.Rd |only tabxplor-1.2.0/tabxplor/man/tab_kable.Rd | 17 tabxplor-1.2.0/tabxplor/man/tab_many.Rd | 210 tabxplor-1.2.0/tabxplor/man/tab_num.Rd | 300 tabxplor-1.2.0/tabxplor/man/tab_pct.Rd | 26 tabxplor-1.2.0/tabxplor/man/tab_plain.Rd | 295 tabxplor-1.2.0/tabxplor/man/tab_plot.Rd |only tabxplor-1.2.0/tabxplor/man/tab_prepare.Rd | 13 tabxplor-1.2.0/tabxplor/man/tab_spread.Rd | 2 tabxplor-1.2.0/tabxplor/man/tab_totaltab.Rd | 4 tabxplor-1.2.0/tabxplor/man/tab_wrap_text.Rd |only tabxplor-1.2.0/tabxplor/po |only tabxplor-1.2.0/tabxplor/tests/testthat/test-fmt_class.R | 2 tabxplor-1.2.0/tabxplor/tests/testthat/test-tab.R | 51 tabxplor-1.2.0/tabxplor/vignettes/tabxplor.Rmd | 731 - 51 files changed, 9264 insertions(+), 7010 deletions(-)
Title: Statistical Inference for Unsupervised Learning
Description: Test for association between the observed data and their estimated latent variables. The jackstraw package provides a resampling strategy and testing scheme to estimate statistical significance of association between the observed data and their latent variables. Depending on the data type and the analysis aim, the latent variables may be estimated by principal component analysis (PCA), factor analysis (FA), K-means clustering, and related unsupervised learning algorithms. The jackstraw methods learn over-fitting characteristics inherent in this circular analysis, where the observed data are used to estimate the latent variables and used again to test against that estimated latent variables. When latent variables are estimated by PCA, the jackstraw enables statistical testing for association between observed variables and latent variables, as estimated by low-dimensional principal components (PCs). This essentially leads to identifying variables that are significantly associated with PC [...truncated...]
Author: Neo Christopher Chung [aut, cre]
,
John D. Storey [aut] ,
Wei Hao [aut],
Alejandro Ochoa [aut]
Maintainer: Neo Christopher Chung <nchchung@gmail.com>
Diff between jackstraw versions 1.3.9 dated 2024-02-07 and 1.3.15 dated 2024-08-30
DESCRIPTION | 43 ++- MD5 | 75 +++-- NAMESPACE | 2 NEWS.md | 66 +++- R/Jurkat293T.R | 2 R/find_k.R | 6 R/generic.R | 4 R/jackstraw.R | 6 R/jackstraw_MiniBatchKmeans.R | 15 - R/jackstraw_alstructure.R |only R/jackstraw_cluster.R | 2 R/jackstraw_irlba.R | 4 R/jackstraw_kmeans.R | 2 R/jackstraw_kmeanspp.R | 2 R/jackstraw_lfa.R |only R/jackstraw_pam.R | 3 R/jackstraw_pca.R | 4 R/jackstraw_rpca.R | 4 R/jackstraw_subspace.R | 4 R/likelihood.R |only R/permute_alleles_from_geno.R |only R/pip.R | 5 README.md | 86 ++++-- build |only man/Jurkat293T.Rd | 2 man/efron_Rsq.Rd |only man/find_k.Rd | 2 man/jackstraw.Rd | 10 man/jackstraw_MiniBatchKmeans.Rd | 2 man/jackstraw_alstructure.Rd |only man/jackstraw_cluster.Rd | 2 man/jackstraw_irlba.Rd | 4 man/jackstraw_kmeans.Rd | 2 man/jackstraw_kmeanspp.Rd | 2 man/jackstraw_lfa.Rd |only man/jackstraw_pam.Rd | 2 man/jackstraw_pca.Rd | 4 man/jackstraw_rpca.Rd | 4 man/jackstraw_subspace.Rd | 4 man/permutationPA.Rd | 4 man/pip.Rd | 6 man/pseudo_Rsq.Rd |only tests/testthat/test-jackstraw.R | 538 ++++++++++++++++++++++++++++++++++----- 43 files changed, 739 insertions(+), 184 deletions(-)
Title: Tidy Finance Helper Functions
Description: Helper functions for empirical research in financial
economics, addressing a variety of topics covered in Scheuch, Voigt,
and Weiss (2023) <doi:10.1201/b23237>. The package is designed to
provide shortcuts for issues extensively discussed in the book,
facilitating easier application of its concepts. For more information
and resources related to the book, visit
<https://www.tidy-finance.org/r/index.html>.
Author: Christoph Scheuch [aut, cre] ,
Stefan Voigt [aut] ,
Patrick Weiss [aut] ,
Maximilian Muecke [ctb]
Maintainer: Christoph Scheuch <christoph.scheuch@gmail.com>
Diff between tidyfinance versions 0.3.0 dated 2024-07-23 and 0.4.0 dated 2024-08-30
tidyfinance-0.3.0/tidyfinance/R/check_if_package_installed.R |only tidyfinance-0.3.0/tidyfinance/R/download_data_stocks.R |only tidyfinance-0.3.0/tidyfinance/man/check_if_package_installed.Rd |only tidyfinance-0.3.0/tidyfinance/man/download_data_stocks.Rd |only tidyfinance-0.3.0/tidyfinance/man/download_data_stocks_yf.Rd |only tidyfinance-0.3.0/tidyfinance/man/list_supported_types_stocks.Rd |only tidyfinance-0.4.0/tidyfinance/DESCRIPTION | 22 - tidyfinance-0.4.0/tidyfinance/MD5 | 150 +++++----- tidyfinance-0.4.0/tidyfinance/NAMESPACE | 26 + tidyfinance-0.4.0/tidyfinance/NEWS.md | 31 ++ tidyfinance-0.4.0/tidyfinance/R/assign_portfolio.R | 109 +++---- tidyfinance-0.4.0/tidyfinance/R/breakpoint_options.R |only tidyfinance-0.4.0/tidyfinance/R/check_supported_type.R | 4 tidyfinance-0.4.0/tidyfinance/R/compute_breakpoints.R |only tidyfinance-0.4.0/tidyfinance/R/compute_long_short_returns.R |only tidyfinance-0.4.0/tidyfinance/R/compute_portfolio_returns.R |only tidyfinance-0.4.0/tidyfinance/R/create_summary_statistics.R | 18 - tidyfinance-0.4.0/tidyfinance/R/create_wrds_dummy_database.R | 11 tidyfinance-0.4.0/tidyfinance/R/data_options.R |only tidyfinance-0.4.0/tidyfinance/R/disconnect_connection.R | 4 tidyfinance-0.4.0/tidyfinance/R/download_data.R | 24 + tidyfinance-0.4.0/tidyfinance/R/download_data_constituents.R |only tidyfinance-0.4.0/tidyfinance/R/download_data_factors.R | 48 +-- tidyfinance-0.4.0/tidyfinance/R/download_data_fred.R |only tidyfinance-0.4.0/tidyfinance/R/download_data_macro_predictors.R | 45 +-- tidyfinance-0.4.0/tidyfinance/R/download_data_osap.R |only tidyfinance-0.4.0/tidyfinance/R/download_data_stock_prices.R |only tidyfinance-0.4.0/tidyfinance/R/download_data_wrds.R | 8 tidyfinance-0.4.0/tidyfinance/R/download_data_wrds_ccm_links.R | 4 tidyfinance-0.4.0/tidyfinance/R/download_data_wrds_clean_trace.R | 20 - tidyfinance-0.4.0/tidyfinance/R/download_data_wrds_compustat.R | 18 - tidyfinance-0.4.0/tidyfinance/R/download_data_wrds_crsp.R | 30 +- tidyfinance-0.4.0/tidyfinance/R/download_data_wrds_fisd.R | 4 tidyfinance-0.4.0/tidyfinance/R/estimate_betas.R |only tidyfinance-0.4.0/tidyfinance/R/estimate_fama_macbeth.R |only tidyfinance-0.4.0/tidyfinance/R/estimate_model.R | 54 +-- tidyfinance-0.4.0/tidyfinance/R/get_random_user_agent.R |only tidyfinance-0.4.0/tidyfinance/R/get_wrds_connection.R | 9 tidyfinance-0.4.0/tidyfinance/R/global_variables.R | 13 tidyfinance-0.4.0/tidyfinance/R/lag_column.R |only tidyfinance-0.4.0/tidyfinance/R/list_supported_indexes.R |only tidyfinance-0.4.0/tidyfinance/R/list_supported_types.R | 27 - tidyfinance-0.4.0/tidyfinance/R/list_tidy_finance_chapters.R | 2 tidyfinance-0.4.0/tidyfinance/R/open_tidy_finance_website.R | 2 tidyfinance-0.4.0/tidyfinance/R/set_wrds_credentials.R | 34 +- tidyfinance-0.4.0/tidyfinance/R/tidyfinance-package.R | 9 tidyfinance-0.4.0/tidyfinance/R/trim.R | 8 tidyfinance-0.4.0/tidyfinance/R/winsorize.R | 4 tidyfinance-0.4.0/tidyfinance/README.md | 5 tidyfinance-0.4.0/tidyfinance/build/vignette.rds |binary tidyfinance-0.4.0/tidyfinance/inst/doc/dates-in-tidyfinance.Rmd | 2 tidyfinance-0.4.0/tidyfinance/inst/doc/dates-in-tidyfinance.html | 20 - tidyfinance-0.4.0/tidyfinance/inst/doc/using-tidyfinance.R | 2 tidyfinance-0.4.0/tidyfinance/inst/doc/using-tidyfinance.Rmd | 2 tidyfinance-0.4.0/tidyfinance/inst/doc/using-tidyfinance.html | 68 ++-- tidyfinance-0.4.0/tidyfinance/man/assign_portfolio.Rd | 59 ++- tidyfinance-0.4.0/tidyfinance/man/breakpoint_options.Rd |only tidyfinance-0.4.0/tidyfinance/man/compute_breakpoints.Rd |only tidyfinance-0.4.0/tidyfinance/man/compute_long_short_returns.Rd |only tidyfinance-0.4.0/tidyfinance/man/compute_portfolio_returns.Rd |only tidyfinance-0.4.0/tidyfinance/man/data_options.Rd |only tidyfinance-0.4.0/tidyfinance/man/download_data.Rd | 8 tidyfinance-0.4.0/tidyfinance/man/download_data_constituents.Rd |only tidyfinance-0.4.0/tidyfinance/man/download_data_factors.Rd | 2 tidyfinance-0.4.0/tidyfinance/man/download_data_factors_ff.Rd | 2 tidyfinance-0.4.0/tidyfinance/man/download_data_factors_q.Rd | 6 tidyfinance-0.4.0/tidyfinance/man/download_data_fred.Rd |only tidyfinance-0.4.0/tidyfinance/man/download_data_macro_predictors.Rd | 11 tidyfinance-0.4.0/tidyfinance/man/download_data_osap.Rd |only tidyfinance-0.4.0/tidyfinance/man/download_data_stock_prices.Rd |only tidyfinance-0.4.0/tidyfinance/man/download_data_wrds.Rd | 2 tidyfinance-0.4.0/tidyfinance/man/download_data_wrds_clean_trace.Rd | 2 tidyfinance-0.4.0/tidyfinance/man/download_data_wrds_compustat.Rd | 4 tidyfinance-0.4.0/tidyfinance/man/download_data_wrds_crsp.Rd | 4 tidyfinance-0.4.0/tidyfinance/man/estimate_betas.Rd |only tidyfinance-0.4.0/tidyfinance/man/estimate_fama_macbeth.Rd |only tidyfinance-0.4.0/tidyfinance/man/estimate_model.Rd | 14 tidyfinance-0.4.0/tidyfinance/man/get_random_user_agent.Rd |only tidyfinance-0.4.0/tidyfinance/man/lag_column.Rd |only tidyfinance-0.4.0/tidyfinance/man/list_supported_indexes.Rd |only tidyfinance-0.4.0/tidyfinance/man/list_supported_types_other.Rd |only tidyfinance-0.4.0/tidyfinance/man/list_supported_types_q.Rd | 2 tidyfinance-0.4.0/tidyfinance/man/list_tidy_finance_chapters.Rd | 1 tidyfinance-0.4.0/tidyfinance/man/open_tidy_finance_website.Rd | 1 tidyfinance-0.4.0/tidyfinance/man/tidyfinance-package.Rd | 5 tidyfinance-0.4.0/tidyfinance/man/trim.Rd | 1 tidyfinance-0.4.0/tidyfinance/man/winsorize.Rd | 1 tidyfinance-0.4.0/tidyfinance/tests/testthat/test-assign_portfolio.R | 41 ++ tidyfinance-0.4.0/tidyfinance/tests/testthat/test-download_data_constituents.R |only tidyfinance-0.4.0/tidyfinance/tests/testthat/test-download_data_fred.R |only tidyfinance-0.4.0/tidyfinance/tests/testthat/test-estimate_betas.R |only tidyfinance-0.4.0/tidyfinance/tests/testthat/test-estimate_fama_macbeth.R |only tidyfinance-0.4.0/tidyfinance/tests/testthat/test-estimate_model.R | 33 ++ tidyfinance-0.4.0/tidyfinance/tests/testthat/test-lag_column.R |only tidyfinance-0.4.0/tidyfinance/vignettes/dates-in-tidyfinance.Rmd | 2 tidyfinance-0.4.0/tidyfinance/vignettes/using-tidyfinance.Rmd | 2 96 files changed, 635 insertions(+), 405 deletions(-)
Title: Read, Write and Edit xlsx Files
Description: Simplifies the creation of Excel .xlsx files by providing a
high level interface to writing, styling and editing worksheets.
Through the use of 'Rcpp', read/write times are comparable to the
'xlsx' and 'XLConnect' packages with the added benefit of removing the
dependency on Java.
Author: Philipp Schauberger [aut],
Alexander Walker [aut],
Luca Braglia [ctb],
Joshua Sturm [ctb],
Jan Marvin Garbuszus [ctb, cre],
Jordan Mark Barbone [ctb] ,
David Zimmermann [ctb],
Reinhold Kainhofer [ctb]
Maintainer: Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>
Diff between openxlsx versions 4.2.6 dated 2024-07-23 and 4.2.7 dated 2024-08-30
DESCRIPTION | 27 - MD5 | 106 +++-- NAMESPACE | 4 NEWS.md | 15 R/WorkbookClass.R | 204 ++++++---- R/baseXML.R | 2 R/borderFunctions.R | 2 R/helperFunctions.R | 233 ++++++++--- R/loadWorkbook.R | 75 +++ R/openxlsx.R | 4 R/openxlsxCoerce.R | 2 R/readWorkbook.R | 6 R/setWindowSize.R |only R/sheet_data_class.R | 4 R/utils.R | 7 R/workbook_column_widths.R | 10 R/workbook_read_workbook.R | 6 R/workbook_write_data.R | 4 R/wrappers.R | 363 +++++++++++++----- R/writeData.R | 8 inst/WORDLIST | 5 inst/doc/Formatting.R | 19 inst/doc/Formatting.Rmd | 19 inst/doc/Formatting.html | 371 +++++++++--------- inst/doc/Introduction.R | 26 - inst/doc/Introduction.Rmd | 26 - inst/doc/Introduction.html | 412 ++++++++++----------- inst/extdata/gh_issue_288.xlsx |only inst/extdata/na_convert.xlsx |only inst/extdata/nested_grouped_rowscols.xlsx |only man/NamedRegion.Rd | 2 man/as_POSIXct_utc.Rd |only man/auto_heights.Rd |only man/get_worksheet_entries.Rd |only man/groupColumns.Rd | 15 man/groupRows.Rd | 53 ++ man/loadWorkbook.Rd | 4 man/makeHyperlinkString.Rd | 22 - man/openxlsx.Rd | 1 man/setRowHeights.Rd | 49 +- man/setWindowSize.Rd |only src/load_workbook.cpp | 14 src/read_workbook.cpp | 39 - src/write_data.cpp | 270 ++++++------- src/write_file.cpp | 20 - src/write_file_2.cpp | 85 +--- tests/testthat/test-date_time_conversion.R | 24 + tests/testthat/test-encoding.R | 2 tests/testthat/test-grouped_rows.R |only tests/testthat/test-load_read_file_read_equality.R | 49 ++ tests/testthat/test-loading_workbook.R | 53 ++ tests/testthat/test-outlines.R | 77 +++ tests/testthat/test-setColWidths.R |only tests/testthat/test-setWindowSize.R |only tests/testthat/test-validate_data.R |only tests/testthat/test-writeData.R | 7 tests/testthat/test-write_data_to_sheetData.R | 2 tests/testthat/test-write_xlsx_vector_args.R | 2 vignettes/Formatting.Rmd | 19 vignettes/Introduction.Rmd | 26 - 60 files changed, 1719 insertions(+), 1076 deletions(-)
Title: Tidy Verbs for Fast Data Manipulation
Description: A toolkit of tidy data manipulation verbs with 'data.table' as the backend.
Combining the merits of syntax elegance from 'dplyr' and computing performance from 'data.table',
'tidyfst' intends to provide users with state-of-the-art data manipulation tools with least pain.
This package is an extension of 'data.table'. While enjoying a tidy syntax,
it also wraps combinations of efficient functions to facilitate frequently-used data operations.
Author: Tian-Yuan Huang [aut, cre]
Maintainer: Tian-Yuan Huang <huang.tian-yuan@qq.com>
Diff between tidyfst versions 1.7.9 dated 2024-06-14 and 1.8.0 dated 2024-08-30
DESCRIPTION | 12 ++++----- MD5 | 16 +++++++------ NAMESPACE | 1 R/print.R | 2 - R/round0.R |only build/vignette.rds |binary inst/doc/benchmark.html | 50 ++++++++++++++++++++--------------------- inst/doc/chinese_tutorial.html | 34 +++++++++++++-------------- man/print_options.Rd | 2 - man/round0.Rd |only 10 files changed, 60 insertions(+), 57 deletions(-)
Title: Headless Chrome Web Browser Interface
Description: An implementation of the 'Chrome DevTools Protocol', for
controlling a headless Chrome web browser.
Author: Winston Chang [aut, cre],
Barret Schloerke [aut] ,
Garrick Aden-Buie [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Winston Chang <winston@posit.co>
Diff between chromote versions 0.3.0 dated 2024-08-29 and 0.3.1 dated 2024-08-30
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/chrome.R | 3 ++- 4 files changed, 12 insertions(+), 7 deletions(-)
Title: Bayesian Generalized Linear Models with Time-Varying
Coefficients
Description: Efficient Bayesian generalized linear models with time-varying coefficients
as in Helske (2022, <doi:10.1016/j.softx.2022.101016>). Gaussian, Poisson, and binomial
observations are supported. The Markov chain Monte Carlo (MCMC) computations are done using
Hamiltonian Monte Carlo provided by Stan, using a state space representation
of the model in order to marginalise over the coefficients for efficient sampling.
For non-Gaussian models, the package uses the importance sampling type estimators based on
approximate marginal MCMC as in Vihola, Helske, Franks (2020, <doi:10.1111/sjos.12492>).
Author: Jouni Helske [aut, cre]
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between walker versions 1.0.8 dated 2023-09-11 and 1.0.10 dated 2024-08-30
DESCRIPTION | 20 MD5 | 87 NAMESPACE | 2 R/fitted.R | 16 R/lfo.R | 14 R/plot_coefs.R | 121 - R/plot_fit.R | 40 R/plot_predict.R | 214 - R/pp_check.R | 75 R/predict.R | 16 R/predict_counterfactual.R | 16 R/print_fit.R | 252 +- R/rw.R | 6 R/test_args.R | 28 R/walker.R | 1253 +++++------ R/walker_rw1.R | 314 +- R/zzz.R | 8 README.md | 10 build/partial.rdb |only inst/CITATION | 45 inst/doc/walker.R | 7 inst/doc/walker.Rmd | 437 +--- inst/doc/walker.html | 106 man/as.data.frame.walker_fit.Rd | 4 man/fitted.walker_fit.Rd | 2 man/lfo.Rd | 8 man/plot_coefs.Rd | 8 man/plot_fit.Rd | 6 man/plot_predict.Rd | 10 man/pp_check.walker_fit.Rd | 11 man/predict.walker_fit.Rd | 12 man/predict_counterfactual.Rd | 14 man/print.walker_fit.Rd | 6 man/rw1.Rd | 10 man/rw2.Rd | 16 man/summary.walker_fit.Rd | 2 man/walker.Rd | 60 man/walker_glm.Rd | 67 man/walker_rw1.Rd | 40 src/stanExports_rw1_model.h | 2134 +++++++++---------- src/stanExports_rw1_model_naive.h | 1214 +++++------ src/stanExports_walker_glm.h | 4145 ++++++++++++++++++-------------------- src/stanExports_walker_lm.h | 3295 ++++++++++++++---------------- vignettes/walker.Rmd | 437 +--- vignettes/walker.bib | 164 - 45 files changed, 7164 insertions(+), 7588 deletions(-)
Title: Bayesian Change-Point Detection and Time Series Decomposition
Description: Interpretation of time series data is affected by model choices. Different models can give different or even contradicting estimates of patterns, trends, and mechanisms for the same data--a limitation alleviated by the Bayesian estimator of abrupt change,seasonality, and trend (BEAST) of this package. BEAST seeks to improve time series decomposition by forgoing the "single-best-model" concept and embracing all competing models into the inference via a Bayesian model averaging scheme. It is a flexible tool to uncover abrupt changes (i.e., change-points, breakpoints, structural breaks, or join-points), cyclic variations (e.g., seasonality), and nonlinear trends in time-series observations. BEAST not just tells when changes occur but also quantifies how likely the detected changes are true. It detects not just piecewise linear trends but also arbitrary nonlinear trends. BEAST is applicable to real-valued time series data of all kinds, be it for remote sensing, economics, climate sciences, [...truncated...]
Author: Tongxi Hu [aut],
Yang Li [aut],
Xuesong Zhang [aut],
Kaiguang Zhao [aut, cre],
Jack Dongarra [ctb],
Cleve Moler [ctb]
Maintainer: Kaiguang Zhao <zhao.1423@osu.edu>
Diff between Rbeast versions 1.0.0 dated 2023-12-08 and 1.0.1 dated 2024-08-30
Rbeast-1.0.0/Rbeast/src/abc_ioFlush.c |only Rbeast-1.0.1/Rbeast/DESCRIPTION | 10 Rbeast-1.0.1/Rbeast/MD5 | 167 +-- Rbeast-1.0.1/Rbeast/NEWS.md | 5 Rbeast-1.0.1/Rbeast/R/beast.R | 191 ++-- Rbeast-1.0.1/Rbeast/R/beast.irreg.R | 183 ++-- Rbeast-1.0.1/Rbeast/R/beast123.R | 46 - Rbeast-1.0.1/Rbeast/R/plot.beast.R | 13 Rbeast-1.0.1/Rbeast/README.md |only Rbeast-1.0.1/Rbeast/data/datalist | 3 Rbeast-1.0.1/Rbeast/man/beast.Rd | 209 ++-- Rbeast-1.0.1/Rbeast/man/beast.irreg.Rd | 158 ++- Rbeast-1.0.1/Rbeast/man/beast123.Rd | 72 - Rbeast-1.0.1/Rbeast/src/_beastv2_gui_plot.c | 2 Rbeast-1.0.1/Rbeast/src/_beastv2_gui_winmain.c | 2 Rbeast-1.0.1/Rbeast/src/abc_000_macro.h | 110 +- Rbeast-1.0.1/Rbeast/src/abc_001_config.h | 18 Rbeast-1.0.1/Rbeast/src/abc_blas_lapack_myl.h | 4 Rbeast-1.0.1/Rbeast/src/abc_blas_lapack_myl_old.h | 8 Rbeast-1.0.1/Rbeast/src/abc_common.c | 113 +- Rbeast-1.0.1/Rbeast/src/abc_common.h | 6 Rbeast-1.0.1/Rbeast/src/abc_cpu.c | 169 ++- Rbeast-1.0.1/Rbeast/src/abc_cpu.h | 17 Rbeast-1.0.1/Rbeast/src/abc_datatype.h | 2 Rbeast-1.0.1/Rbeast/src/abc_date.c | 33 Rbeast-1.0.1/Rbeast/src/abc_date.h | 1 Rbeast-1.0.1/Rbeast/src/abc_dir.c | 2 Rbeast-1.0.1/Rbeast/src/abc_ide_util.h | 21 Rbeast-1.0.1/Rbeast/src/abc_ide_util_R.c | 7 Rbeast-1.0.1/Rbeast/src/abc_ide_util_common.c | 32 Rbeast-1.0.1/Rbeast/src/abc_ide_util_matlab.c | 18 Rbeast-1.0.1/Rbeast/src/abc_ide_util_python.c | 306 ++++++ Rbeast-1.0.1/Rbeast/src/abc_mat.c | 116 -- Rbeast-1.0.1/Rbeast/src/abc_mat.h | 6 Rbeast-1.0.1/Rbeast/src/abc_math_avx.c | 12 Rbeast-1.0.1/Rbeast/src/abc_math_avx.h | 2 Rbeast-1.0.1/Rbeast/src/abc_math_avx512.c | 10 Rbeast-1.0.1/Rbeast/src/abc_mcmc.h | 5 Rbeast-1.0.1/Rbeast/src/abc_mem.c | 8 Rbeast-1.0.1/Rbeast/src/abc_mem.h | 10 Rbeast-1.0.1/Rbeast/src/abc_pthread.c | 38 Rbeast-1.0.1/Rbeast/src/abc_pthread.h | 27 Rbeast-1.0.1/Rbeast/src/abc_rand_pcg_global.c | 4 Rbeast-1.0.1/Rbeast/src/abc_rand_pcg_local_avx2.c | 12 Rbeast-1.0.1/Rbeast/src/abc_rand_pcg_local_avx512.c | 8 Rbeast-1.0.1/Rbeast/src/abc_sort.c | 240 +---- Rbeast-1.0.1/Rbeast/src/abc_sort.h | 23 Rbeast-1.0.1/Rbeast/src/abc_sort_template.h |only Rbeast-1.0.1/Rbeast/src/abc_system.c | 2 Rbeast-1.0.1/Rbeast/src/abc_timer.c | 26 Rbeast-1.0.1/Rbeast/src/abc_timer.h | 8 Rbeast-1.0.1/Rbeast/src/abc_tranpose.c | 8 Rbeast-1.0.1/Rbeast/src/abc_ts_func.c | 5 Rbeast-1.0.1/Rbeast/src/abc_vec.h | 8 Rbeast-1.0.1/Rbeast/src/abc_vec_avx2.c | 18 Rbeast-1.0.1/Rbeast/src/abc_vec_avx512.c | 18 Rbeast-1.0.1/Rbeast/src/abc_vec_generic.c | 2 Rbeast-1.0.1/Rbeast/src/abc_win32_demo.c | 4 Rbeast-1.0.1/Rbeast/src/beastv2_COREV4.c | 649 +++++++------- Rbeast-1.0.1/Rbeast/src/beastv2_COREV4_bic.c | 663 +++++++-------- Rbeast-1.0.1/Rbeast/src/beastv2_COREV4_bic_mthrd.c | 605 ++++++------- Rbeast-1.0.1/Rbeast/src/beastv2_COREV4_gui.c | 627 ++++++-------- Rbeast-1.0.1/Rbeast/src/beastv2_COREV4_mthrd.c | 577 ++++++------- Rbeast-1.0.1/Rbeast/src/beastv2_basis_allocinitmem.c | 11 Rbeast-1.0.1/Rbeast/src/beastv2_basis_cvtKnotsToBinVec.c | 22 Rbeast-1.0.1/Rbeast/src/beastv2_basis_genrandbasis.c | 35 Rbeast-1.0.1/Rbeast/src/beastv2_basis_pickcmptId.c | 24 Rbeast-1.0.1/Rbeast/src/beastv2_basis_proposeNew_q.c | 401 ++------- Rbeast-1.0.1/Rbeast/src/beastv2_basis_updategoodvec.c | 16 Rbeast-1.0.1/Rbeast/src/beastv2_date.c | 2 Rbeast-1.0.1/Rbeast/src/beastv2_func.h | 13 Rbeast-1.0.1/Rbeast/src/beastv2_func_q.c | 255 +++-- Rbeast-1.0.1/Rbeast/src/beastv2_header.h | 50 - Rbeast-1.0.1/Rbeast/src/beastv2_header_solaris.h | 40 Rbeast-1.0.1/Rbeast/src/beastv2_io_in_args.c | 85 + Rbeast-1.0.1/Rbeast/src/beastv2_io_out_allocmem_q.c | 84 + Rbeast-1.0.1/Rbeast/src/beastv2_io_out_printargs.c | 93 +- Rbeast-1.0.1/Rbeast/src/beastv2_io_out_write_q.c | 6 Rbeast-1.0.1/Rbeast/src/beastv2_model_allocinit_q.c | 39 Rbeast-1.0.1/Rbeast/src/beastv2_prior_precfunc.c | 176 ++- Rbeast-1.0.1/Rbeast/src/beastv2_prior_precfunc.h | 12 Rbeast-1.0.1/Rbeast/src/beastv2_xxyy_allocmem_q.c | 6 Rbeast-1.0.1/Rbeast/src/globalvars.c | 8 Rbeast-1.0.1/Rbeast/src/globalvars.h | 12 Rbeast-1.0.1/Rbeast/src/glue_code.c | 228 +++-- Rbeast-1.0.1/Rbeast/src/tetris.c | 2 86 files changed, 3783 insertions(+), 3506 deletions(-)
Title: Processing and Analyzing of Diagnostics Trials
Description: Provides methods and functions to analyze the quantitative or
qualitative performance for diagnostic assays, and outliers detection,
reader precision and reference range are discussed. Most of the methods
and algorithms refer to CLSI (Clinical & Laboratory Standards Institute)
recommendations and NMPA (National Medical Products Administration)
guidelines. In additional, relevant plots are constructed by 'ggplot2'.
Author: Kai Gu [aut, cre, cph]
Maintainer: Kai Gu <gukai1212@163.com>
Diff between mcradds versions 1.1.0 dated 2023-12-04 and 1.1.1 dated 2024-08-30
DESCRIPTION | 8 - MD5 | 22 +-- NEWS.md | 4 R/autoplot.R | 3 R/correlation.R | 2 build/vignette.rds |binary inst/doc/mcradds.html | 70 +++++----- man/VCAinference.Rd | 7 - man/spearmanTest.Rd | 2 tests/testthat/_snaps/autoplot/autoplot-basummary-with-relative-diff.svg | 2 tests/testthat/_snaps/autoplot/autoplot-mcresult-with-default-arguments.svg | 4 tests/testthat/_snaps/autoplot/autoplot-mcresult-with-multiple-arguments.svg | 16 +- 12 files changed, 70 insertions(+), 70 deletions(-)
Title: Many Ways to Make, Modify, Map, Mark, and Measure Myriad
Networks
Description: Many tools for making, modifying, mapping, marking, measuring,
and motifs and memberships of many different types of networks.
All functions operate with matrices, edge lists, and 'igraph', 'network', and 'tidygraph' objects,
and on one-mode, two-mode (bipartite), and sometimes three-mode networks.
The package includes functions for importing and exporting, creating and generating networks,
modifying networks and node and tie attributes,
and describing and visualizing networks with sensible defaults.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between manynet versions 1.0.2 dated 2024-07-22 and 1.0.5 dated 2024-08-30
manynet-1.0.2/manynet/man/correlation.Rd |only manynet-1.0.2/manynet/man/create.Rd |only manynet-1.0.2/manynet/man/generate.Rd |only manynet-1.0.2/manynet/man/split.Rd |only manynet-1.0.5/manynet/DESCRIPTION | 8 manynet-1.0.5/manynet/MD5 | 115 - manynet-1.0.5/manynet/NAMESPACE | 16 manynet-1.0.5/manynet/NEWS.md | 76 manynet-1.0.5/manynet/R/class_members.R | 32 manynet-1.0.5/manynet/R/make_create.R | 319 ++- manynet-1.0.5/manynet/R/make_generate.R | 172 + manynet-1.0.5/manynet/R/manip_as.R | 4 manynet-1.0.5/manynet/R/manip_correlation.R | 63 manynet-1.0.5/manynet/R/manip_reformed.R | 2 manynet-1.0.5/manynet/R/manip_split.R | 12 manynet-1.0.5/manynet/R/manynet-tutorials.R | 85 manynet-1.0.5/manynet/R/map_autograph.R | 322 +-- manynet-1.0.5/manynet/R/mark_ties.R | 98 + manynet-1.0.5/manynet/R/measure_attributes.R | 7 manynet-1.0.5/manynet/R/measure_features.R | 4 manynet-1.0.5/manynet/R/measure_heterogeneity.R | 4 manynet-1.0.5/manynet/R/member_community.R | 13 manynet-1.0.5/manynet/inst/tutorials/tutorial3/centrality.html | 82 manynet-1.0.5/manynet/inst/tutorials/tutorial4/community.Rmd | 109 - manynet-1.0.5/manynet/inst/tutorials/tutorial4/community.html | 490 +++-- manynet-1.0.5/manynet/inst/tutorials/tutorial5/position.Rmd | 31 manynet-1.0.5/manynet/inst/tutorials/tutorial5/position.html | 283 +-- manynet-1.0.5/manynet/inst/tutorials/tutorial6/topology.Rmd | 73 manynet-1.0.5/manynet/inst/tutorials/tutorial6/topology.html | 369 ++-- manynet-1.0.5/manynet/inst/tutorials/tutorial7/diffusion.Rmd | 78 manynet-1.0.5/manynet/inst/tutorials/tutorial7/diffusion.html | 922 +++++----- manynet-1.0.5/manynet/man/add_nodes.Rd | 5 manynet-1.0.5/manynet/man/add_ties.Rd | 5 manynet-1.0.5/manynet/man/as.Rd | 5 manynet-1.0.5/manynet/man/data_overview.Rd | 10 manynet-1.0.5/manynet/man/from.Rd | 5 manynet-1.0.5/manynet/man/graphr.Rd | 8 manynet-1.0.5/manynet/man/grapht.Rd | 18 manynet-1.0.5/manynet/man/learning.Rd | 5 manynet-1.0.5/manynet/man/make_create.Rd |only manynet-1.0.5/manynet/man/make_explicit.Rd |only manynet-1.0.5/manynet/man/make_generate.Rd |only manynet-1.0.5/manynet/man/manip_correlation.Rd |only manynet-1.0.5/manynet/man/manip_permutation.Rd |only manynet-1.0.5/manynet/man/manip_split.Rd |only manynet-1.0.5/manynet/man/mark_diff.Rd | 3 manynet-1.0.5/manynet/man/mark_nodes.Rd | 3 manynet-1.0.5/manynet/man/mark_select.Rd | 3 manynet-1.0.5/manynet/man/mark_tie_select.Rd | 3 manynet-1.0.5/manynet/man/mark_ties.Rd | 3 manynet-1.0.5/manynet/man/mark_triangles.Rd |only manynet-1.0.5/manynet/man/measure_heterogeneity.Rd | 4 manynet-1.0.5/manynet/man/miss.Rd | 5 manynet-1.0.5/manynet/man/play.Rd | 5 manynet-1.0.5/manynet/man/read.Rd | 5 manynet-1.0.5/manynet/man/reformat.Rd | 5 manynet-1.0.5/manynet/man/to_levels.Rd | 5 manynet-1.0.5/manynet/man/to_paths.Rd | 5 manynet-1.0.5/manynet/man/to_project.Rd | 5 manynet-1.0.5/manynet/man/to_scope.Rd | 5 manynet-1.0.5/manynet/man/write.Rd | 5 manynet-1.0.5/manynet/tests/testthat/test-manip_transform.R | 4 manynet-1.0.5/manynet/tests/testthat/test-map_autographr.R | 12 manynet-1.0.5/manynet/tests/testthat/test-map_theme.R | 10 64 files changed, 2278 insertions(+), 1662 deletions(-)
Title: Create Tables from Different Types of Regression
Description: Create regression tables from generalized linear model(GLM), generalized estimating equation(GEE), generalized linear mixed-effects model(GLMM), Cox proportional hazards model, survey-weighted generalized linear model(svyglm) and survey-weighted Cox model results for publication.
Author: Jinseob Kim [aut, cre] ,
Zarathu [cph, fnd],
Yoonkyoung Jeon [aut],
Jaehun Shon [aut],
Hyojong Myung [aut]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jstable versions 1.3.0 dated 2024-07-06 and 1.3.3 dated 2024-08-30
DESCRIPTION | 14 ++-- MD5 | 20 +++--- NEWS.md | 15 ++++ R/CreateTableOneJS.R | 2 R/cox2.R | 159 +++++++++++++++++++++++++++++++----------------- R/forestcox.R | 54 +++++++++------- R/forestglm.R | 3 R/svyCreateTableOneJS.R | 8 +- README.md | 2 inst/doc/jstable.html | 40 ++++++------ man/cox2.display.Rd | 4 - 11 files changed, 201 insertions(+), 120 deletions(-)
Title: Object Oriented Implementation of Probability Models
Description: Implements S4 classes for probability models based on packages 'distr' and
'distrEx'.
Author: Matthias Kohl [aut, cph],
Peter Ruckdeschel [cre, cph],
R Core Team [ctb, cph]
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between distrMod versions 2.9.1 dated 2024-02-01 and 2.9.3 dated 2024-08-30
DESCRIPTION | 16 ++++++------- MD5 | 20 ++++++++-------- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS | 18 +++++++++++++++ inst/doc/distrMod.pdf |binary man/0distrMod-package.Rd | 6 ++--- man/distrModMASK.Rd | 2 + man/qqplot.Rd | 2 - man/returnlevelplot.Rd | 2 - tests/Examples/distrMod-Ex.Rout.save | 42 ++++++++++++++++++----------------- 11 files changed, 65 insertions(+), 43 deletions(-)