Title: Latin Hypercube Designs (LHDs)
Description: Contains different algorithms and construction methods for optimal Latin hypercube designs (LHDs) with flexible sizes. Our package is comprehensive since it is capable of generating maximin distance LHDs, maximum projection LHDs, and orthogonal and nearly orthogonal LHDs. Detailed comparisons and summary of all the algorithms and construction methods in this package can be found at Hongzhi Wang, Qian Xiao and Abhyuday Mandal (2021) <doi:10.48550/arXiv.2010.09154>. This package is particularly useful in the area of Design and Analysis of Experiments (DAE). More specifically, design of computer experiments.
Author: Hongzhi Wang [aut, cre],
Qian Xiao [aut],
Abhyuday Mandal [aut]
Maintainer: Hongzhi Wang <wanghongzhi.ut@gmail.com>
Diff between LHD versions 1.3.3 dated 2021-07-31 and 1.4.0 dated 2024-09-10
DESCRIPTION | 14 MD5 | 24 NEWS.md | 30 R/FastMmLHD.R | 4 R/dij.R | 4 R/exchange.R | 2 build/vignette.rds |binary inst/doc/Vignette_for_LHD.R | 2 inst/doc/Vignette_for_LHD.html | 2130 +++++++++++++++------------------ man/dij.Rd | 4 man/exchange.Rd | 2 tests/testthat/testmyfunctions_part1.R | 137 ++ tests/testthat/testmyfunctions_part2.R | 18 13 files changed, 1191 insertions(+), 1180 deletions(-)
Title: Statistical Analysis in Epidemiology
Description: Functions for demographic and epidemiological analysis in
the Lexis diagram, i.e. register and cohort follow-up data. In
particular representation, manipulation, rate estimation and
simulation for multistate data - the Lexis suite of functions, which
includes interfaces to 'mstate', 'etm' and 'cmprsk' packages.
Contains functions for Age-Period-Cohort and Lee-Carter modeling and
a function for interval censored data and some useful functions for
tabulation and plotting, as well as a number of epidemiological data
sets.
Author: Bendix Carstensen [aut, cre],
Martyn Plummer [aut],
Esa Laara [ctb],
Michael Hills [ctb]
Maintainer: Bendix Carstensen <b@bxc.dk>
Diff between Epi versions 2.53 dated 2024-07-18 and 2.55 dated 2024-09-10
Epi-2.53/Epi/vignettes/addLexis.tex |only Epi-2.53/Epi/vignettes/crisk.tex |only Epi-2.53/Epi/vignettes/flup.tex |only Epi-2.53/Epi/vignettes/simLexis.tex |only Epi-2.53/Epi/vignettes/yll.tex |only Epi-2.55/Epi/CHANGES | 18 Epi-2.55/Epi/DESCRIPTION | 8 Epi-2.55/Epi/MD5 | 44 Epi-2.55/Epi/R/ci.eta.R | 22 Epi-2.55/Epi/R/plotEst.R | 37 Epi-2.55/Epi/build |only Epi-2.55/Epi/inst/doc/addLexis.pdf |binary Epi-2.55/Epi/inst/doc/addLexis.rnw |only Epi-2.55/Epi/inst/doc/crisk.R | 14 Epi-2.55/Epi/inst/doc/crisk.pdf |binary Epi-2.55/Epi/inst/doc/crisk.rnw |only Epi-2.55/Epi/inst/doc/flup.R | 16 Epi-2.55/Epi/inst/doc/flup.pdf | 4537 +++++++++++++++++------------------- Epi-2.55/Epi/inst/doc/flup.rnw |only Epi-2.55/Epi/inst/doc/index.html |only Epi-2.55/Epi/inst/doc/simLexis.R | 6 Epi-2.55/Epi/inst/doc/simLexis.pdf |binary Epi-2.55/Epi/inst/doc/simLexis.rnw |only Epi-2.55/Epi/inst/doc/yll.R | 5 Epi-2.55/Epi/inst/doc/yll.pdf |binary Epi-2.55/Epi/inst/doc/yll.rnw |only Epi-2.55/Epi/man/ci.lin.Rd | 4 Epi-2.55/Epi/man/nice.Rd | 11 Epi-2.55/Epi/src/clogit.c | 28 29 files changed, 2397 insertions(+), 2353 deletions(-)
Title: CFO-Type Designs in Phase I/II Clinical Trials
Description: In phase I clinical trials, the primary objective is to ascertain the maximum tolerated dose (MTD) corresponding to a specified target toxicity rate. The subsequent phase II trials are designed to examine the potential efficacy of the drug based on the MTD obtained from the phase I trials, with the aim of identifying the optimal biological dose (OBD). The 'CFO' package facilitates the implementation of dose-finding trials by utilizing calibration-free odds type (CFO-type) designs. Specifically, it encompasses the calibration-free odds (CFO) (Jin and Yin (2022) <doi:10.1177/09622802221079353>), two-dimensional CFO (2dCFO) (Wang et al. (2023) <doi:10.3389/fonc.2023.1294258>), time-to-event CFO (TITE-CFO) (Jin and Yin (2023) <doi:10.1002/pst.2304>), fractional CFO (fCFO), accumulative CFO (aCFO), TITE-aCFO, and f-aCFO designs (Fang and Yin (2024) <doi: 10.1002/sim.10127>). It supports phase I/II trials for the CFO design and only phase I trials for the other CFO-ty [...truncated...]
Author: Jialu Fang [aut, cre],
Wenliang Wang [aut],
Ninghao Zhang [aut],
Guosheng Yin [aut]
Maintainer: Jialu Fang <u3008682@connect.hku.hk>
Diff between CFO versions 1.3.1 dated 2024-06-26 and 2.0.0 dated 2024-09-10
DESCRIPTION | 14 + MD5 | 66 ++++---- NAMESPACE | 3 R/CFO.next.R | 6 R/CFO.oc.R | 10 - R/CFO.selectmtd.R | 6 R/CFO.simu.R | 25 ++- R/CFO2d.next.R | 6 R/CFO2d.oc.R | 10 - R/CFO2d.selectmtd.R | 6 R/CFO2d.simu.R | 26 ++- R/CFOeff.next.R |only R/CFOeff.oc.R |only R/CFOeff.simu.R |only R/aCFO.next.R | 6 R/lateonset.next.R | 21 -- R/lateonset.simu.R | 27 ++- R/plot.cfo.R | 388 ++++++++++++++++++++++++++++++++----------------- R/print.cfo.R | 23 ++ R/summury.cfo.R | 232 +++++++++++++++++++++-------- man/CFO.next.Rd | 6 man/CFO.oc.Rd | 8 - man/CFO.selectmtd.Rd | 6 man/CFO.simu.Rd | 10 - man/CFO2d.next.Rd | 6 man/CFO2d.oc.Rd | 6 man/CFO2d.selectmtd.Rd | 6 man/CFO2d.simu.Rd | 11 - man/CFOeff.next.Rd |only man/CFOeff.oc.Rd |only man/CFOeff.simu.Rd |only man/aCFO.next.Rd | 6 man/lateonset.next.Rd | 10 - man/lateonset.simu.Rd | 13 - man/plot.cfo.Rd | 24 ++- man/print.cfo.Rd | 23 ++ man/summary.cfo.Rd | 23 ++ 37 files changed, 694 insertions(+), 339 deletions(-)
Title: An Interface to the 'AutoDesk' 'API' Platform
Description: An interface to the 'AutoDesk' 'API' Platform including the Authentication
'API' for obtaining authentication to the 'AutoDesk' Forge Platform, Data Management
'API' for managing data across the platform's cloud services, Design Automation 'API'
for performing automated tasks on design files in the cloud, Model
Derivative 'API' for translating design files into different formats, sending
them to the viewer app, and extracting design data, and Viewer for rendering
2D and 3D models.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between AutoDeskR versions 0.1.3 dated 2017-07-09 and 0.1.5 dated 2024-09-10
AutoDeskR-0.1.3/AutoDeskR/inst/doc/AutoDeskR.Rmd |only AutoDeskR-0.1.3/AutoDeskR/inst/doc/AutoDeskR.html |only AutoDeskR-0.1.3/AutoDeskR/vignettes/AutoDeskR.Rmd |only AutoDeskR-0.1.5/AutoDeskR/DESCRIPTION | 28 - AutoDeskR-0.1.5/AutoDeskR/MD5 | 72 ++-- AutoDeskR-0.1.5/AutoDeskR/NEWS.md | 4 AutoDeskR-0.1.5/AutoDeskR/R/authentication.R | 1 AutoDeskR-0.1.5/AutoDeskR/R/dataManagement.R | 3 AutoDeskR-0.1.5/AutoDeskR/R/designAutomation.R | 4 AutoDeskR-0.1.5/AutoDeskR/R/modelDerivative.R | 16 AutoDeskR-0.1.5/AutoDeskR/R/viewer.R | 4 AutoDeskR-0.1.5/AutoDeskR/README.md | 225 -------------- AutoDeskR-0.1.5/AutoDeskR/build/vignette.rds |binary AutoDeskR-0.1.5/AutoDeskR/inst/CITATION |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Authentication.Rmd |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Authentication.html |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Data-Management.Rmd |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Data-Management.html |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Design-Automation.Rmd |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Design-Automation.html |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Model-Derivative.Rmd |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Model-Derivative.html |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Troubleshooting.Rmd |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Troubleshooting.html |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Viewer.Rmd |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Viewer.html |only AutoDeskR-0.1.5/AutoDeskR/man/checkBucket.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/checkFile.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/checkPdf.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/downloadFile.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/getData.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/getMetadata.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/getObjectTree.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/getOutputUrn.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/getToken.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/makeBucket.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/makePdf.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/translateObj.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/translateSvf.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/uploadFile.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/viewer3D.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/viewerUI.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/vignettes/Authentication.Rmd |only AutoDeskR-0.1.5/AutoDeskR/vignettes/Data-Management.Rmd |only AutoDeskR-0.1.5/AutoDeskR/vignettes/Design-Automation.Rmd |only AutoDeskR-0.1.5/AutoDeskR/vignettes/Model-Derivative.Rmd |only AutoDeskR-0.1.5/AutoDeskR/vignettes/Troubleshooting.Rmd |only AutoDeskR-0.1.5/AutoDeskR/vignettes/Viewer.Rmd |only 48 files changed, 79 insertions(+), 326 deletions(-)
Title: UK Flood Estimation
Description: Functions to implement the methods of the Flood Estimation Handbook (FEH), associated updates and the revitalised flood hydrograph model (ReFH). Currently the package uses NRFA peak flow dataset version 13. Aside from FEH functionality, further hydrological functions are available. Most of the methods implemented in this package are described in one or more of the following: "Flood Estimation Handbook", Centre for Ecology & Hydrology (1999, ISBN:0 948540 94 X). "Flood Estimation Handbook Supplementary Report No. 1", Kjeldsen (2007, ISBN:0 903741 15 7). "Regional Frequency Analysis - an approach based on L-moments", Hosking & Wallis (1997, ISBN: 978 0 521 01940 8). "Proposal of the extreme rank plot for extreme value analysis: with an emphasis on flood frequency studies", Hammond (2019, <doi:10.2166/nh.2019.157>). "Making better use of local data in flood frequency estimation", Environment Agency (2017, ISBN: 978 1 84911 387 8). "Sampling uncertainty of UK design flood est [...truncated...]
Author: Anthony Hammond [aut, cre]
Maintainer: Anthony Hammond <agqhammond@gmail.com>
Diff between UKFE versions 0.3.5 dated 2024-05-16 and 0.3.6 dated 2024-09-10
UKFE-0.3.5/UKFE/man/RainEA.Rd |only UKFE-0.3.5/UKFE/man/RainSEPA.Rd |only UKFE-0.3.6/UKFE/DESCRIPTION | 16 - UKFE-0.3.6/UKFE/MD5 | 73 ++--- UKFE-0.3.6/UKFE/R/AMSP.R | 4 UKFE-0.3.6/UKFE/R/All.R | 460 +++++++++++++++++++++++++++------- UKFE-0.3.6/UKFE/R/NRFAData.R | 4 UKFE-0.3.6/UKFE/R/QMEDData.R | 6 UKFE-0.3.6/UKFE/R/RainAPI.R | 155 ++++++++++- UKFE-0.3.6/UKFE/data/AMSP.rda |binary UKFE-0.3.6/UKFE/data/NRFAData.rda |binary UKFE-0.3.6/UKFE/data/QMEDData.rda |binary UKFE-0.3.6/UKFE/man/AMSP.Rd | 4 UKFE-0.3.6/UKFE/man/AggDayHour.Rd | 6 UKFE-0.3.6/UKFE/man/DiagPlots.Rd | 8 UKFE-0.3.6/UKFE/man/ERPlot.Rd |only UKFE-0.3.6/UKFE/man/EVPool.Rd | 20 - UKFE-0.3.6/UKFE/man/GetMetOffice.Rd |only UKFE-0.3.6/UKFE/man/GetNRFA.Rd |only UKFE-0.3.6/UKFE/man/GetRainEA.Rd |only UKFE-0.3.6/UKFE/man/GetRainSEPA.Rd |only UKFE-0.3.6/UKFE/man/GoFCompare.Rd |only UKFE-0.3.6/UKFE/man/GoFComparePool.Rd |only UKFE-0.3.6/UKFE/man/LKurt.Rd | 4 UKFE-0.3.6/UKFE/man/LSkew.Rd | 4 UKFE-0.3.6/UKFE/man/Lcv.Rd | 4 UKFE-0.3.6/UKFE/man/Lmoms.Rd | 4 UKFE-0.3.6/UKFE/man/NRFAData.Rd | 4 UKFE-0.3.6/UKFE/man/OptimPars.Rd | 2 UKFE-0.3.6/UKFE/man/QMED.Rd | 8 UKFE-0.3.6/UKFE/man/QMEDData.Rd | 6 UKFE-0.3.6/UKFE/man/QMEDDonEq.Rd | 14 - UKFE-0.3.6/UKFE/man/TrendTest.Rd | 21 - UKFE-0.3.6/UKFE/man/WGaugLSkew.Rd | 6 UKFE-0.3.6/UKFE/man/WGaugLcv.Rd | 6 UKFE-0.3.6/UKFE/man/WeightsGLSkew.Rd | 6 UKFE-0.3.6/UKFE/man/WeightsGLcv.Rd | 6 UKFE-0.3.6/UKFE/man/WeightsUnLSkew.Rd | 6 UKFE-0.3.6/UKFE/man/WeightsUnLcv.Rd | 6 UKFE-0.3.6/UKFE/man/WungLSkew.Rd | 6 UKFE-0.3.6/UKFE/man/WungLcv.Rd | 6 UKFE-0.3.6/UKFE/man/Zdists.Rd | 2 42 files changed, 658 insertions(+), 219 deletions(-)
Title: A Framework for Enterprise Shiny Applications
Description: A framework that supports creating and extending enterprise Shiny applications using best practices.
Author: Kamil Zyla [aut, cre],
Jakub Nowicki [aut],
Leszek Sieminski [aut],
Marek Rogala [aut],
Recle Vibal [aut],
Tymoteusz Makowski [aut],
Rodrigo Basa [aut],
Eduardo Almeida [ctb],
Appsilon Sp. z o.o. [cph]
Maintainer: Kamil Zyla <opensource+kamil@appsilon.com>
Diff between rhino versions 1.9.0 dated 2024-07-10 and 1.10.0 dated 2024-09-10
DESCRIPTION | 14 +++++----- MD5 | 23 +++++++++-------- NAMESPACE | 1 NEWS.md | 14 ++++++++-- R/dependencies.R | 3 ++ R/linters.R | 5 +++ R/tools.R | 52 ++++++++++++++++++++++++++++++++++++--- inst/WORDLIST | 2 + inst/templates/renv/dot.Rprofile | 7 +++++ man/format_r.Rd | 24 ++++++++++++++++-- man/lint_r.Rd | 4 +++ tests/e2e/test-box-lsp.R |only tests/e2e/test-lint-r.R | 2 + 13 files changed, 125 insertions(+), 26 deletions(-)
Title: High-Level Functions for Tabulating, Charting and Reporting
Survey Data
Description: Craft polished tables and plots in Markdown reports.
Simply choose whether to treat your data as counts or metrics,
and the package will automatically generate well-designed default tables and plots for you.
Boiled down to the basics, with labeling features and simple interactive reports.
All functions are 'tidyverse' compatible.
Author: Jakob Juenger [aut, cre, cph] ,
Henrieke Kotthoff [aut, ctb],
Chantal Gaertner [ctb]
Maintainer: Jakob Juenger <jakob.juenger@uni-muenster.de>
Diff between volker versions 2.0.1 dated 2024-05-11 and 2.1.0 dated 2024-09-10
volker-2.0.1/volker/man/VLKR_NA_NUMERIC.Rd |only volker-2.0.1/volker/man/get_cohensd.Rd |only volker-2.0.1/volker/man/knit_plot.Rd |only volker-2.0.1/volker/man/knit_prepare.Rd |only volker-2.0.1/volker/man/knit_table.Rd |only volker-2.1.0/volker/DESCRIPTION | 20 volker-2.1.0/volker/MD5 | 241 + volker-2.1.0/volker/NAMESPACE | 18 volker-2.1.0/volker/NEWS.md | 6 volker-2.1.0/volker/R/checks.R | 31 volker-2.1.0/volker/R/clean.R | 296 +- volker-2.1.0/volker/R/config.R | 91 volker-2.1.0/volker/R/data.R | 2 volker-2.1.0/volker/R/effects.R | 823 ++++-- volker-2.1.0/volker/R/idx.R | 36 volker-2.1.0/volker/R/labels.R | 369 ++ volker-2.1.0/volker/R/plots.R | 1296 +++++++--- volker-2.1.0/volker/R/report.R | 90 volker-2.1.0/volker/R/skim.R | 2 volker-2.1.0/volker/R/tables.R | 905 +++++- volker-2.1.0/volker/R/utils.R | 24 volker-2.1.0/volker/README.md | 340 +- volker-2.1.0/volker/data/chatgpt.rda |binary volker-2.1.0/volker/inst/doc/introduction.R | 71 volker-2.1.0/volker/inst/doc/introduction.Rmd | 136 - volker-2.1.0/volker/inst/doc/introduction.html | 279 +- volker-2.1.0/volker/inst/extdata/header.tex |only volker-2.1.0/volker/inst/rmarkdown/templates/volker-report/skeleton/skeleton.Rmd | 100 volker-2.1.0/volker/man/VLKR_FIG_SETTINGS.Rd |only volker-2.1.0/volker/man/VLKR_FILLDISCRETE.Rd | 2 volker-2.1.0/volker/man/VLKR_FILLGRADIENT.Rd | 2 volker-2.1.0/volker/man/VLKR_FILLPOLARIZED.Rd |only volker-2.1.0/volker/man/VLKR_NA_LEVELS.Rd | 2 volker-2.1.0/volker/man/VLKR_NA_NUMBERS.Rd |only volker-2.1.0/volker/man/VLKR_NORMAL_DIGITS.Rd |only volker-2.1.0/volker/man/VLKR_PLOT_LABELWRAP.Rd |only volker-2.1.0/volker/man/VLKR_POINT_ALPHA.Rd |only volker-2.1.0/volker/man/VLKR_POINT_MEAN_SHAPE.Rd |only volker-2.1.0/volker/man/VLKR_POINT_SIZE.Rd |only volker-2.1.0/volker/man/VLKR_WRAP_SEPARATOR.Rd |only volker-2.1.0/volker/man/cfg_get_na_numbers.Rd |only volker-2.1.0/volker/man/chatgpt.Rd | 2 volker-2.1.0/volker/man/check_is_param.Rd |only volker-2.1.0/volker/man/codebook.Rd | 2 volker-2.1.0/volker/man/data_clean.Rd | 8 volker-2.1.0/volker/man/data_clean_sosci.Rd | 20 volker-2.1.0/volker/man/data_prepare.Rd |only volker-2.1.0/volker/man/data_rm_na_levels.Rd |only volker-2.1.0/volker/man/data_rm_na_numbers.Rd |only volker-2.1.0/volker/man/dot-effect_correlations.Rd | 3 volker-2.1.0/volker/man/dot-effect_npmi.Rd |only volker-2.1.0/volker/man/dot-factor_with_attr.Rd |only volker-2.1.0/volker/man/dot-get_fig_settings.Rd |only volker-2.1.0/volker/man/dot-knit_plot.Rd |only volker-2.1.0/volker/man/dot-knit_prepare.Rd |only volker-2.1.0/volker/man/dot-knit_table.Rd |only volker-2.1.0/volker/man/dot-plot_cor.Rd |only volker-2.1.0/volker/man/dot-plot_lines.Rd | 16 volker-2.1.0/volker/man/dot-plot_summary.Rd |only volker-2.1.0/volker/man/dot-tab_split.Rd |only volker-2.1.0/volker/man/dot-to_vlkr_plot.Rd | 12 volker-2.1.0/volker/man/effect_counts.Rd | 20 volker-2.1.0/volker/man/effect_counts_items.Rd | 12 volker-2.1.0/volker/man/effect_counts_items_cor.Rd | 6 volker-2.1.0/volker/man/effect_counts_items_cor_items.Rd |only volker-2.1.0/volker/man/effect_counts_items_grouped.Rd | 2 volker-2.1.0/volker/man/effect_counts_items_grouped_items.Rd |only volker-2.1.0/volker/man/effect_counts_one.Rd | 19 volker-2.1.0/volker/man/effect_counts_one_cor.Rd | 4 volker-2.1.0/volker/man/effect_metrics.Rd | 20 volker-2.1.0/volker/man/effect_metrics_items.Rd | 20 volker-2.1.0/volker/man/effect_metrics_items_cor.Rd | 14 volker-2.1.0/volker/man/effect_metrics_items_cor_items.Rd |only volker-2.1.0/volker/man/effect_metrics_items_grouped.Rd | 25 volker-2.1.0/volker/man/effect_metrics_items_grouped_items.Rd |only volker-2.1.0/volker/man/effect_metrics_one.Rd | 15 volker-2.1.0/volker/man/effect_metrics_one_cor.Rd | 5 volker-2.1.0/volker/man/effect_metrics_one_grouped.Rd | 8 volker-2.1.0/volker/man/figures/plot_counts_one_grouped.png |binary volker-2.1.0/volker/man/figures/plot_metrics_items.png |binary volker-2.1.0/volker/man/figures/report_example.png |only volker-2.1.0/volker/man/get_angle.Rd |only volker-2.1.0/volker/man/get_baseline.Rd | 8 volker-2.1.0/volker/man/get_gini.Rd |only volker-2.1.0/volker/man/get_limits.Rd | 12 volker-2.1.0/volker/man/get_title.Rd | 4 volker-2.1.0/volker/man/idx_add.Rd | 8 volker-2.1.0/volker/man/knit_print.vlkr_plt.Rd |only volker-2.1.0/volker/man/labs_apply.Rd | 82 volker-2.1.0/volker/man/labs_impute.Rd |only volker-2.1.0/volker/man/labs_replace.Rd | 6 volker-2.1.0/volker/man/labs_restore.Rd | 5 volker-2.1.0/volker/man/labs_store.Rd | 6 volker-2.1.0/volker/man/pdf_report.Rd |only volker-2.1.0/volker/man/plot_counts.Rd | 39 volker-2.1.0/volker/man/plot_counts_items_cor.Rd | 41 volker-2.1.0/volker/man/plot_counts_items_cor_items.Rd |only volker-2.1.0/volker/man/plot_counts_items_grouped.Rd | 38 volker-2.1.0/volker/man/plot_counts_items_grouped_items.Rd |only volker-2.1.0/volker/man/plot_counts_one_cor.Rd | 38 volker-2.1.0/volker/man/plot_metrics.Rd | 36 volker-2.1.0/volker/man/plot_metrics_items.Rd | 3 volker-2.1.0/volker/man/plot_metrics_items_cor.Rd | 19 volker-2.1.0/volker/man/plot_metrics_items_cor_items.Rd |only volker-2.1.0/volker/man/plot_metrics_items_grouped.Rd | 3 volker-2.1.0/volker/man/plot_metrics_items_grouped_items.Rd |only volker-2.1.0/volker/man/plot_metrics_one.Rd | 3 volker-2.1.0/volker/man/plot_metrics_one_cor.Rd | 3 volker-2.1.0/volker/man/plot_metrics_one_grouped.Rd | 3 volker-2.1.0/volker/man/skim_metrics.Rd | 2 volker-2.1.0/volker/man/tab_counts.Rd | 30 volker-2.1.0/volker/man/tab_counts_items_cor.Rd | 52 volker-2.1.0/volker/man/tab_counts_items_cor_items.Rd |only volker-2.1.0/volker/man/tab_counts_items_grouped.Rd | 42 volker-2.1.0/volker/man/tab_counts_items_grouped_items.Rd |only volker-2.1.0/volker/man/tab_counts_one_cor.Rd | 35 volker-2.1.0/volker/man/tab_metrics.Rd | 28 volker-2.1.0/volker/man/tab_metrics_items.Rd | 3 volker-2.1.0/volker/man/tab_metrics_items_cor.Rd | 12 volker-2.1.0/volker/man/tab_metrics_items_cor_items.Rd |only volker-2.1.0/volker/man/tab_metrics_items_grouped.Rd | 3 volker-2.1.0/volker/man/tab_metrics_items_grouped_items.Rd |only volker-2.1.0/volker/man/tab_metrics_one.Rd | 3 volker-2.1.0/volker/man/tab_metrics_one_cor.Rd | 7 volker-2.1.0/volker/man/tab_metrics_one_grouped.Rd | 3 volker-2.1.0/volker/man/tidy_lm_levels.Rd | 2 volker-2.1.0/volker/man/trunc_labels.Rd |only volker-2.1.0/volker/man/vlkr_colors_polarized.Rd |only volker-2.1.0/volker/man/vlkr_colors_sequential.Rd | 4 volker-2.1.0/volker/man/volker-package.Rd | 1 volker-2.1.0/volker/tests/testthat/_markdown/plots.Rmd | 264 +- volker-2.1.0/volker/tests/testthat/_markdown/reports.Rmd | 8 volker-2.1.0/volker/tests/testthat/_markdown/tables.Rmd | 20 volker-2.1.0/volker/tests/testthat/_snaps/clean.md | 51 volker-2.1.0/volker/tests/testthat/_snaps/effects.md | 554 ++-- volker-2.1.0/volker/tests/testthat/_snaps/labels.md | 364 ++ volker-2.1.0/volker/tests/testthat/_snaps/skim.md |only volker-2.1.0/volker/tests/testthat/_snaps/tables.md | 240 + volker-2.1.0/volker/tests/testthat/_snaps/utils.md |only volker-2.1.0/volker/tests/testthat/test-checks.R |only volker-2.1.0/volker/tests/testthat/test-clean.R | 56 volker-2.1.0/volker/tests/testthat/test-effects.R | 54 volker-2.1.0/volker/tests/testthat/test-labels.R | 135 - volker-2.1.0/volker/tests/testthat/test-plots.R |only volker-2.1.0/volker/tests/testthat/test-tables.R | 101 volker-2.1.0/volker/tests/testthat/test-theme.R |only volker-2.1.0/volker/tests/testthat/test-utils.R | 25 volker-2.1.0/volker/tests/testthat/test_skim.R |only volker-2.1.0/volker/vignettes/introduction.Rmd | 136 - 149 files changed, 5654 insertions(+), 2353 deletions(-)
Title: R and C++ Interfaces to 'spdlog' C++ Header Library for Logging
Description: The mature and widely-used C++ logging library 'spdlog' by Gabi Melman provides
many desirable features. This package bundles these header files for easy use by R packages
from both their R and C or C++ code. Explicit use via 'LinkingTo:' is also supported. Also
see the 'spdl' package which enhanced this package with a consistent R and C++ interface.
Author: Dirk Eddelbuettel [aut, cre] ,
Gabi Melman [aut] ,
Victor Zverovic [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppSpdlog versions 0.0.17 dated 2024-04-26 and 0.0.18 dated 2024-09-10
ChangeLog | 16 DESCRIPTION | 18 MD5 | 42 - README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 19 inst/doc/introduction.html | 786 +++++++++++++------------- inst/include/RcppSpdlog | 1 inst/include/spdlog/common.h | 2 inst/include/spdlog/details/file_helper-inl.h | 2 inst/include/spdlog/details/os-inl.h | 9 inst/include/spdlog/details/registry-inl.h | 27 inst/include/spdlog/details/registry.h | 15 inst/include/spdlog/details/thread_pool.h | 4 inst/include/spdlog/fmt/fmt.h | 2 inst/include/spdlog/mdc.h | 54 + inst/include/spdlog/pattern_formatter-inl.h | 8 inst/include/spdlog/spdlog-inl.h | 10 inst/include/spdlog/spdlog.h | 8 inst/include/spdlog/version.h | 2 src/interface.cpp | 3 22 files changed, 519 insertions(+), 511 deletions(-)
Title: Bayesian Gower Agreement for Categorical Data
Description: Provides tools for applying the Bayesian Gower agreement methodology (presented in the package vignette) to nominal or ordinal data. The framework can accommodate any number of units, any number of coders, and missingness; and can handle both one-way and two-way random study designs. Influential units and/or coders can be identified easily using leave-one-out statistics.
Author: John Hughes [aut, cre]
Maintainer: John Hughes <drjphughesjr@gmail.com>
Diff between goweragreement versions 1.0 dated 2024-02-02 and 1.0-1 dated 2024-09-10
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- R/gower.R | 27 ++++++++++++--------------- 3 files changed, 19 insertions(+), 22 deletions(-)
More information about goweragreement at CRAN
Permanent link
Title: Generalized Dissimilarity Modeling
Description: A toolkit with functions to fit, plot, summarize, and apply Generalized Dissimilarity Models. Mokany K, Ware C, Woolley SNC, Ferrier S, Fitzpatrick MC (2022) <doi:10.1111/geb.13459> Ferrier S, Manion G, Elith J, Richardson K (2007) <doi:10.1111/j.1472-4642.2007.00341.x>.
Author: Matt Fitzpatrick [aut, cre] ,
Karel Mokany [aut] ,
Glenn Manion [aut],
Diego Nieto-Lugilde [aut] ,
Simon Ferrier [aut] ,
Roozbeh Valavi [ctb],
Matthew Lisk [ctb],
Chris Ware [ctb],
Skip Woolley [ctb],
Tom Harwood [ctb]
Maintainer: Matt Fitzpatrick <mfitzpatrick@umces.edu>
Diff between gdm versions 1.5.0-9.1 dated 2022-12-01 and 1.6.0-1 dated 2024-09-10
gdm-1.5.0-9.1/gdm/data/gdmDissim.RData |only gdm-1.6.0-1/gdm/DESCRIPTION | 17 gdm-1.6.0-1/gdm/MD5 | 67 ++- gdm-1.6.0-1/gdm/NAMESPACE | 8 gdm-1.6.0-1/gdm/NEWS.md | 7 gdm-1.6.0-1/gdm/R/data.R | 2 gdm-1.6.0-1/gdm/R/gdm.calculate.deviance.R | 2 gdm-1.6.0-1/gdm/R/gdm.checks.R |only gdm-1.6.0-1/gdm/R/gdm.createsitepair.R | 6 gdm-1.6.0-1/gdm/R/gdm.crossvalidation.R | 2 gdm-1.6.0-1/gdm/R/gdm.fit.R | 2 gdm-1.6.0-1/gdm/R/gdm.formatsitepair.R | 190 +++++----- gdm-1.6.0-1/gdm/R/gdm.predict.R | 174 +++++---- gdm-1.6.0-1/gdm/R/gdm.single.crossvalidation.R | 2 gdm-1.6.0-1/gdm/R/gdm.transform.R | 265 +++++--------- gdm-1.6.0-1/gdm/README.md | 206 ++++++---- gdm-1.6.0-1/gdm/data/gdmDissim2.RData |only gdm-1.6.0-1/gdm/inst/extdata/swBioclims.grd | 47 +- gdm-1.6.0-1/gdm/inst/extdata/swBioclims.gri |binary gdm-1.6.0-1/gdm/inst/extdata/test_data |only gdm-1.6.0-1/gdm/inst/tinytest |only gdm-1.6.0-1/gdm/man/figures/README-extractSplines-1.png |binary gdm-1.6.0-1/gdm/man/figures/README-plotGDM-1.png |binary gdm-1.6.0-1/gdm/man/figures/README-predictSpaceGDM-1.png |binary gdm-1.6.0-1/gdm/man/figures/README-predictTimeGDM-1.png |binary gdm-1.6.0-1/gdm/man/figures/README-transformGDM-1.png |binary gdm-1.6.0-1/gdm/man/figures/README-unnamed-chunk-10-1.png |binary gdm-1.6.0-1/gdm/man/figures/README-unnamed-chunk-9-1.png |only gdm-1.6.0-1/gdm/man/formatsitepair.Rd | 46 +- gdm-1.6.0-1/gdm/man/gdm.Rd | 2 gdm-1.6.0-1/gdm/man/gdm.transform.Rd | 47 +- gdm-1.6.0-1/gdm/man/gdmDissim.Rd | 2 gdm-1.6.0-1/gdm/man/predict.gdm.Rd | 12 gdm-1.6.0-1/gdm/src/Makevars | 2 gdm-1.6.0-1/gdm/src/Makevars.win | 2 gdm-1.6.0-1/gdm/tests |only 36 files changed, 600 insertions(+), 510 deletions(-)
Title: Analyze Paleontological Time-Series
Description: Facilitates analysis of paleontological sequences of trait values.
Functions are provided to fit, using maximum likelihood, simple
evolutionary models (including unbiased random walks, directional
evolution,stasis, Ornstein-Uhlenbeck, covariate-tracking) and
complex models (punctuation, mode shifts).
Author: Gene Hunt [aut, cre, cph] ,
John Fricks [ctb]
Maintainer: Gene Hunt <hunte@si.edu>
Diff between paleoTS versions 0.6.1 dated 2024-06-06 and 0.6.2 dated 2024-09-10
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 11 +++++++++++ R/basics.R | 2 +- R/complexModels.R | 10 +++++----- R/simpleModels.R | 3 +++ README.md | 6 +++--- build/vignette.rds |binary inst/doc/paleoTS_basics.html | 4 ++-- man/bootSimpleComplex.Rd | 6 +++--- man/figures/README-example-1.png |binary man/fitGpunc.Rd | 4 ++-- 12 files changed, 44 insertions(+), 30 deletions(-)
Title: Hyperparameter Optimization for 'mlr3'
Description: Hyperparameter optimization package of the 'mlr3' ecosystem.
It features highly configurable search spaces via the 'paradox'
package and finds optimal hyperparameter configurations for any 'mlr3'
learner. 'mlr3tuning' works with several optimization algorithms e.g.
Random Search, Iterated Racing, Bayesian Optimization (in 'mlr3mbo')
and Hyperband (in 'mlr3hyperband'). Moreover, it can automatically
optimize learners and estimate the performance of optimized models
with nested resampling.
Author: Marc Becker [cre, aut] ,
Michel Lang [aut] ,
Jakob Richter [aut] ,
Bernd Bischl [aut] ,
Daniel Schalk [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3tuning versions 1.0.0 dated 2024-06-29 and 1.0.1 dated 2024-09-10
mlr3tuning-1.0.0/mlr3tuning/tests/testthat/test_TuningInstanceMultiCrit.R |only mlr3tuning-1.0.0/mlr3tuning/tests/testthat/test_TuningInstanceSingleCrit.R |only mlr3tuning-1.0.1/mlr3tuning/DESCRIPTION | 12 - mlr3tuning-1.0.1/mlr3tuning/MD5 | 112 +++++----- mlr3tuning-1.0.1/mlr3tuning/NEWS.md | 5 mlr3tuning-1.0.1/mlr3tuning/R/ArchiveAsyncTuning.R | 13 - mlr3tuning-1.0.1/mlr3tuning/R/ArchiveBatchTuning.R | 13 - mlr3tuning-1.0.1/mlr3tuning/R/AutoTuner.R | 67 +---- mlr3tuning-1.0.1/mlr3tuning/R/CallbackAsyncTuning.R | 26 +- mlr3tuning-1.0.1/mlr3tuning/R/ContextAsyncTuning.R | 4 mlr3tuning-1.0.1/mlr3tuning/R/ObjectiveTuning.R | 9 mlr3tuning-1.0.1/mlr3tuning/R/ObjectiveTuningAsync.R | 8 mlr3tuning-1.0.1/mlr3tuning/R/ObjectiveTuningBatch.R | 17 + mlr3tuning-1.0.1/mlr3tuning/R/TunerAsyncFromOptimizerAsync.R | 14 + mlr3tuning-1.0.1/mlr3tuning/R/TunerBatch.R | 7 mlr3tuning-1.0.1/mlr3tuning/R/TunerBatchFromBatchOptimizer.R | 22 + mlr3tuning-1.0.1/mlr3tuning/R/TunerBatchInternal.R | 5 mlr3tuning-1.0.1/mlr3tuning/R/TunerBatchIrace.R | 7 mlr3tuning-1.0.1/mlr3tuning/R/TuningInstanceAsyncMulticrit.R | 58 +++-- mlr3tuning-1.0.1/mlr3tuning/R/TuningInstanceAsyncSingleCrit.R | 54 +++- mlr3tuning-1.0.1/mlr3tuning/R/TuningInstanceBatchMulticrit.R | 60 +++-- mlr3tuning-1.0.1/mlr3tuning/R/TuningInstanceBatchSingleCrit.R | 58 +++-- mlr3tuning-1.0.1/mlr3tuning/R/auto_tuner.R | 3 mlr3tuning-1.0.1/mlr3tuning/R/helper.R | 84 +++---- mlr3tuning-1.0.1/mlr3tuning/R/mlr_callbacks.R | 95 -------- mlr3tuning-1.0.1/mlr3tuning/inst/testthat/helper_misc.R | 6 mlr3tuning-1.0.1/mlr3tuning/man/AutoTuner.Rd | 18 - mlr3tuning-1.0.1/mlr3tuning/man/ContextAsyncTuning.Rd | 2 mlr3tuning-1.0.1/mlr3tuning/man/ObjectiveTuning.Rd | 10 mlr3tuning-1.0.1/mlr3tuning/man/ObjectiveTuningBatch.Rd | 7 mlr3tuning-1.0.1/mlr3tuning/man/TunerAsyncFromOptimizerAsync.Rd | 8 mlr3tuning-1.0.1/mlr3tuning/man/TunerBatchFromOptimizerBatch.Rd | 8 mlr3tuning-1.0.1/mlr3tuning/man/TuningInstanceAsyncMultiCrit.Rd | 21 + mlr3tuning-1.0.1/mlr3tuning/man/TuningInstanceAsyncSingleCrit.Rd | 21 + mlr3tuning-1.0.1/mlr3tuning/man/TuningInstanceBatchMultiCrit.Rd | 14 - mlr3tuning-1.0.1/mlr3tuning/man/TuningInstanceBatchSingleCrit.Rd | 21 + mlr3tuning-1.0.1/mlr3tuning/man/auto_tuner.Rd | 4 mlr3tuning-1.0.1/mlr3tuning/man/callback_async_tuning.Rd | 24 +- mlr3tuning-1.0.1/mlr3tuning/man/mlr_tuners_internal.Rd | 5 mlr3tuning-1.0.1/mlr3tuning/man/set_validate.AutoTuner.Rd | 10 mlr3tuning-1.0.1/mlr3tuning/tests/testthat/helper.R | 1 mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_ArchiveAsyncTuning.R | 43 +++ mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_ArchiveBatchTuning.R | 11 mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_AutoTuner.R | 73 ------ mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_Tuner.R | 1 mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_TunerAsyncDesignPoints.R | 4 mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_TunerAsyncGridSearch.R | 4 mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_TunerAsyncRandomSearch.R | 88 ------- mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_TunerBatch.R |only mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_TunerBatchFromOptimizerBatch.R |only mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_TunerBatchIrace.R | 10 mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_TunerBatchRandomSearch.R | 1 mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_TuningInstanceAsyncMultiCrit.R | 71 +++++- mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_TuningInstanceAsyncSingleCrit.R | 79 ++++++- mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_TuningInstanceBatchMultiCrit.R |only mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_TuningInstanceBatchSingleCrit.R |only mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_auto_tuner.R | 6 mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_error_handling.R | 8 mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_mlr_callbacks.R | 22 - mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_ti_async.R | 8 60 files changed, 752 insertions(+), 610 deletions(-)
Title: Maximum Likelihood Estimation of Various Univariate and
Multivariate Distributions
Description: Several functions for maximum likelihood estimation of various univariate and multivariate distributions. The list includes more than 100 univariate continuous and discrete distributions, distributions that lie on the real line, the positive line, interval restricted, circular distributions. Further, multivariate continuous and discrete distributions, distributions for compositional and directional data, etc. Some references include Johnson N. L., Kotz S. and Balakrishnan N. (1994). "Continuous Univariate Distributions, Volume 1" <ISBN:978-0-471-58495-7>, Johnson, Norman L. Kemp, Adrianne W. Kotz, Samuel (2005). "Univariate Discrete Distributions". <ISBN:978-0-471-71580-1> and Mardia, K. V. and Jupp, P. E. (2000). "Directional Statistics". <ISBN:978-0-471-95333-3>.
Author: Michail Tsagris [aut, cre],
Sofia Piperaki [aut],
Muhammad Imran [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between MLE versions 1.0 dated 2024-07-21 and 1.1 dated 2024-09-10
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/hspher.mle.R | 6 +++++- man/MLE-package.Rd | 4 ++-- man/hspher.mle.Rd | 14 +++++++++----- 5 files changed, 25 insertions(+), 17 deletions(-)
Title: Analyze Isotope Ratios in a 'Shiny'-App
Description: Analyzing Inductively Coupled Plasma - Mass Spectrometry (ICP-MS)
measurement data to evaluate isotope ratios (IRs) is a complex process.
The 'IsoCor' package facilitates this process and renders it reproducible
by providing a function to run a 'Shiny'-App locally in any web browser.
In this App the user can upload data files of various formats, select ion
traces, apply peak detection and perform calculation of IRs and delta
values. Results are provided as figures and tables and can be exported.
The App, therefore, facilitates data processing of ICP-MS experiments to
quickly obtain optimal processing parameters compared to traditional 'Excel'
worksheet based approaches. A more detailed description can be found in the
corresponding article <doi:10.1039/D2JA00208F>. The most recent version
of 'IsoCor' can be tested online at <https://apps.bam.de/shn00/IsoCor/>.
Author: Jan Lisec [aut, cre]
Maintainer: Jan Lisec <jan.lisec@bam.de>
Diff between IsoCor versions 0.1.40 dated 2022-09-07 and 0.2.8 dated 2024-09-10
IsoCor-0.1.40/IsoCor/R/find_peak_boundaries.R |only IsoCor-0.1.40/IsoCor/R/get_iso_amu.R |only IsoCor-0.1.40/IsoCor/R/help_the_user.R |only IsoCor-0.1.40/IsoCor/R/ic_specplot.R |only IsoCor-0.1.40/IsoCor/R/iso_ratio.R |only IsoCor-0.1.40/IsoCor/R/isotopes.R |only IsoCor-0.1.40/IsoCor/R/mass_bias.R |only IsoCor-0.1.40/IsoCor/R/read_clipboard.R |only IsoCor-0.1.40/IsoCor/R/read_raw_data.R |only IsoCor-0.1.40/IsoCor/R/testdata.R |only IsoCor-0.1.40/IsoCor/man/help_the_user.Rd |only IsoCor-0.1.40/IsoCor/tests/testthat/test-read_raw_data.R |only IsoCor-0.2.8/IsoCor/DESCRIPTION | 49 IsoCor-0.2.8/IsoCor/MD5 | 67 IsoCor-0.2.8/IsoCor/NAMESPACE | 114 IsoCor-0.2.8/IsoCor/R/app_config.R | 62 IsoCor-0.2.8/IsoCor/R/app_data.R |only IsoCor-0.2.8/IsoCor/R/app_functions.R |only IsoCor-0.2.8/IsoCor/R/app_plots.R |only IsoCor-0.2.8/IsoCor/R/app_tables.R |only IsoCor-0.2.8/IsoCor/R/app_utils.R |only IsoCor-0.2.8/IsoCor/R/ic_app.R | 2095 ++++------ IsoCor-0.2.8/IsoCor/README.md |only IsoCor-0.2.8/IsoCor/build |only IsoCor-0.2.8/IsoCor/data/testdata_IDMS.rda |only IsoCor-0.2.8/IsoCor/inst/CITATION |only IsoCor-0.2.8/IsoCor/inst/app/www/01_general.Rmd | 24 IsoCor-0.2.8/IsoCor/inst/app/www/03_import_params.Rmd | 32 IsoCor-0.2.8/IsoCor/inst/app/www/05_plot_options.Rmd | 37 IsoCor-0.2.8/IsoCor/inst/app/www/06_peak_table.Rmd | 93 IsoCor-0.2.8/IsoCor/inst/app/www/07_ratio_table.Rmd | 57 IsoCor-0.2.8/IsoCor/inst/app/www/08_delta_table.Rmd | 21 IsoCor-0.2.8/IsoCor/inst/app/www/09_IDMS_table.Rmd |only IsoCor-0.2.8/IsoCor/inst/app/www/10_processing_params_IDMS.Rmd |only IsoCor-0.2.8/IsoCor/inst/app/www/images/01_general_03.png |only IsoCor-0.2.8/IsoCor/inst/app/www/js/tracking-live.js |only IsoCor-0.2.8/IsoCor/inst/golem-config.yml | 3 IsoCor-0.2.8/IsoCor/man/find_peak_boundaries.Rd |only IsoCor-0.2.8/IsoCor/man/ic_app.Rd | 16 IsoCor-0.2.8/IsoCor/man/iso_ratio.Rd | 15 IsoCor-0.2.8/IsoCor/man/isotopes.Rd | 4 IsoCor-0.2.8/IsoCor/man/mass_bias.Rd | 12 IsoCor-0.2.8/IsoCor/man/read_raw_data.Rd | 9 IsoCor-0.2.8/IsoCor/man/testdata.Rd | 2 IsoCor-0.2.8/IsoCor/man/testdata_IDMS.Rd |only IsoCor-0.2.8/IsoCor/tests/testthat/_snaps |only IsoCor-0.2.8/IsoCor/tests/testthat/test-app_functions.R |only IsoCor-0.2.8/IsoCor/tests/testthat/test-ic_app.R |only IsoCor-0.2.8/IsoCor/tests/testthat/test_app_plots.R |only 49 files changed, 1194 insertions(+), 1518 deletions(-)
Title: Non-Longitudinal Bayesian Historical Borrowing Models
Description: Historical borrowing in clinical trials can improve
precision and operating characteristics. This package supports
a hierarchical model and a mixture model to borrow historical
control data from other studies to better characterize the
control response of the current study. It also quantifies
the amount of borrowing through benchmark models (independent
and pooled). Some of the methods are discussed by
Viele et al. (2013) <doi:10.1002/pst.1589>.
Author: William Michael Landau [aut, cre]
,
Albert Man [rev],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between historicalborrow versions 1.0.4 dated 2022-09-13 and 1.1.0 dated 2024-09-10
DESCRIPTION | 12 MD5 | 82 +- NAMESPACE | 3 R/hb_ess.R |only R/hb_mcmc_hierarchical.R | 71 +- R/hb_metrics.R | 17 R/hb_package.R | 5 R/hb_plot_borrow.R | 24 R/hb_plot_group.R | 24 R/hb_s_tau.R | 7 R/hb_sim_hierarchical.R | 46 + R/hb_summary.R | 28 R/utils_jags.R | 9 README.md | 24 build/vignette.rds |binary inst/WORDLIST | 4 inst/doc/methods.R | 2 inst/doc/methods.Rmd | 91 +- inst/doc/methods.html | 651 +++++++++++++------ inst/doc/usage.R | 25 inst/doc/usage.Rmd | 41 - inst/doc/usage.html | 984 ++++++++++++++++------------- inst/jags/hierarchical_beta.jags | 2 inst/jags/hierarchical_nobeta.jags | 2 man/hb_convergence.Rd | 2 man/hb_data.Rd | 4 man/hb_ess.Rd |only man/hb_mcmc_hierarchical.Rd | 54 + man/hb_mcmc_independent.Rd | 2 man/hb_mcmc_pool.Rd | 4 man/hb_metrics.Rd | 16 man/hb_plot_borrow.Rd | 3 man/hb_plot_group.Rd | 3 man/hb_s_tau.Rd | 11 man/hb_sim_hierarchical.Rd | 28 man/hb_summary.Rd | 18 man/historicalborrow-package.Rd | 1 tests/testthat/test-hb_ess.R |only tests/testthat/test-hb_mcmc_hierarchical.R | 130 ++- tests/testthat/test-hb_sim_hierarchical.R | 103 +-- tests/testthat/test-hb_summary.R | 28 vignettes/bibliography.bib |only vignettes/methods.Rmd | 91 +- vignettes/usage.Rmd | 41 - 44 files changed, 1650 insertions(+), 1043 deletions(-)
More information about historicalborrow at CRAN
Permanent link
Title: The 'epilogi' Variable Selection Algorithm for Continuous Data
Description: The 'epilogi' variable selection algorithm is implemented for the case of continuous response and predictor variables. The relevant paper is: Lakiotaki K., Papadovasilakis Z., Lagani V., Fafalios S., Charonyktakis P., Tsagris M. and Tsamardinos I. (2023). "Automated machine learning for Genome Wide Association Studies". Bioinformatics. <doi:10.1093/bioinformatics/btad545>.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between epilogi versions 1.0 dated 2023-10-01 and 1.1 dated 2024-09-10
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- man/epilogi-package.Rd | 4 ++-- 3 files changed, 9 insertions(+), 9 deletions(-)
More information about ContourFunctions at CRAN
Permanent link
Title: Linters for 'box' Modules
Description: Static code analysis of 'box' modules.
The package enhances code quality by providing linters that check for common issues,
enforce best practices, and ensure consistent coding standards.
Author: Ricardo Rodrigo Basa [aut, cre],
Jakub Nowicki [aut],
Mateusz Kolomanski [ctb],
Appsilon Sp. z o.o. [cph]
Maintainer: Ricardo Rodrigo Basa <opensource+rodrigo@appsilon.com>
Diff between box.linters versions 0.10.4 dated 2024-09-03 and 0.10.5 dated 2024-09-10
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ tests/testthat/test-style_box_use.R | 4 ++-- 4 files changed, 13 insertions(+), 9 deletions(-)
Title: Standardize Plant Names According to World Flora Online
Taxonomic Backbone
Description: World Flora Online is an online flora of all known plants, available from <https://www.worldfloraonline.org/>. Methods are provided of matching a list of plant names (scientific names, taxonomic names, botanical names) against a static copy of the World Flora Online Taxonomic Backbone data that can be downloaded from the World Flora Online website. The World Flora Online Taxonomic Backbone is an updated version of The Plant List (<http://www.theplantlist.org/>), a working list of plant names that has become static since 2013.
Author: Roeland Kindt [cre, aut]
Maintainer: Roeland Kindt <RoelandCEKindt@gmail.com>
Diff between WorldFlora versions 1.14-4 dated 2024-08-21 and 1.14-5 dated 2024-09-10
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/WFO.one.R | 21 ++++++++------------- inst/ChangeLog | 6 ++++++ 4 files changed, 21 insertions(+), 20 deletions(-)
Title: Simulating Multistate Movements in River/Heterogeneous
Landscapes
Description: Provides functions to generate and analyze spatially-explicit individual-based multistate movements in rivers,
heterogeneous and homogeneous spaces. This is done by incorporating landscape bias on local behaviour, based on
resistance rasters. Although originally conceived and designed to simulate trajectories of species constrained to
linear habitats/dendritic ecological networks (e.g. river networks), the simulation algorithm is built to be
highly flexible and can be applied to any (aquatic, semi-aquatic or terrestrial) organism, independently on the
landscape in which it moves. Thus, the user will be able to use the package to simulate movements either in
homogeneous landscapes, heterogeneous landscapes (e.g. semi-aquatic animal moving mainly along rivers but also using
the matrix), or even in highly contrasted landscapes (e.g. fish in a river network). The algorithm and its input
parameters are the same for all cases, so that results are comparable. Simulated trajectories can then b [...truncated...]
Author: Lorenzo Quaglietta [aut],
Miguel Porto [aut, cre],
Erida Gjini [ctb]
Maintainer: Miguel Porto <mpbertolo@gmail.com>
Diff between SiMRiv versions 1.0.6 dated 2023-09-15 and 1.0.7 dated 2024-09-10
SiMRiv-1.0.6/SiMRiv/data |only SiMRiv-1.0.6/SiMRiv/man/river.Rd |only SiMRiv-1.0.7/SiMRiv/DESCRIPTION | 13 ++++----- SiMRiv-1.0.7/SiMRiv/MD5 | 35 ++++++++++++------------- SiMRiv-1.0.7/SiMRiv/NAMESPACE | 3 -- SiMRiv-1.0.7/SiMRiv/R/SiMRiv.r | 18 ++++++------ SiMRiv-1.0.7/SiMRiv/R/internal.r | 4 ++ SiMRiv-1.0.7/SiMRiv/build/partial.rdb |binary SiMRiv-1.0.7/SiMRiv/build/vignette.rds |binary SiMRiv-1.0.7/SiMRiv/inst/doc/SiMRiv.R | 17 +++++------- SiMRiv-1.0.7/SiMRiv/inst/doc/SiMRiv.Rnw | 17 +++++------- SiMRiv-1.0.7/SiMRiv/inst/doc/SiMRiv.pdf |binary SiMRiv-1.0.7/SiMRiv/inst/doc/river.tif |only SiMRiv-1.0.7/SiMRiv/man/adjustModel.Rd | 8 ++--- SiMRiv-1.0.7/SiMRiv/man/resistanceFromShape.Rd | 6 ++-- SiMRiv-1.0.7/SiMRiv/man/simulate.Rd | 2 - SiMRiv-1.0.7/SiMRiv/src/SiMRiv.h | 4 +- SiMRiv-1.0.7/SiMRiv/src/raster-fn.c | 30 +++++++++++++-------- SiMRiv-1.0.7/SiMRiv/src/simulate.c | 13 +++++---- SiMRiv-1.0.7/SiMRiv/vignettes/SiMRiv.Rnw | 17 +++++------- 20 files changed, 97 insertions(+), 90 deletions(-)
Title: Psychometric Mixture Models
Description: Psychometric mixture models based on 'flexmix' infrastructure. At the moment Rasch mixture models
with different parameterizations of the score distribution (saturated vs. mean/variance specification),
Bradley-Terry mixture models, and MPT mixture models are implemented. These mixture models can be estimated
with or without concomitant variables. See Frick et al. (2012) <doi:10.18637/jss.v048.i07> and
Frick et al. (2015) <doi:10.1177/0013164414536183> for details on the Rasch mixture models.
Author: Hannah Frick [aut] ,
Friedrich Leisch [aut] ,
Carolin Strobl [aut] ,
Florian Wickelmaier [aut],
Achim Zeileis [aut, cre]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between psychomix versions 1.1-8 dated 2020-01-30 and 1.1-9 dated 2024-09-10
psychomix-1.1-8/psychomix/NEWS |only psychomix-1.1-9/psychomix/DESCRIPTION | 32 ++--- psychomix-1.1-9/psychomix/MD5 | 30 ++--- psychomix-1.1-9/psychomix/NEWS.md |only psychomix-1.1-9/psychomix/build/partial.rdb |binary psychomix-1.1-9/psychomix/build/vignette.rds |binary psychomix-1.1-9/psychomix/inst/CITATION | 59 +++------- psychomix-1.1-9/psychomix/inst/doc/raschmix.pdf |binary psychomix-1.1-9/psychomix/inst/doc/scores.pdf |binary psychomix-1.1-9/psychomix/man/btmix.Rd | 6 - psychomix-1.1-9/psychomix/man/effectsplot.Rd | 4 psychomix-1.1-9/psychomix/man/mptmix.Rd | 2 psychomix-1.1-9/psychomix/man/raschmix.Rd | 6 - psychomix-1.1-9/psychomix/man/raschmixPlotMethod.Rd | 4 psychomix-1.1-9/psychomix/man/simRaschmix.Rd | 2 psychomix-1.1-9/psychomix/tests/Examples/psychomix-Ex.Rout.save | 9 - psychomix-1.1-9/psychomix/vignettes/psychomix.bib | 10 - 17 files changed, 73 insertions(+), 91 deletions(-)
Title: Provides 'box' Compatibility for 'languageserver'
Description: A 'box' compatible custom language parser for the 'languageserver' package to provide
completion and signature hints in code editors.
Author: Ricardo Rodrigo Basa [aut, cre],
Pavel Demin [aut],
Jakub Nowicki [aut],
Appsilon Sp. z o.o. [cph]
Maintainer: Ricardo Rodrigo Basa <opensource+rodrigo@appsilon.com>
Diff between box.lsp versions 0.1.0 dated 2024-09-02 and 0.1.1 dated 2024-09-10
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ README.md | 11 +++++++++-- tests/testthat/test-lsp_completion_package_attach_list.R | 1 + 5 files changed, 21 insertions(+), 9 deletions(-)
Title: Tools for Analyzing Cross-National Military Deployment and
Basing Data
Description: These functions generate data frames on troop deployments and military basing using U.S. Department of Defense data on overseas military deployments. This package provides functions for pulling country-year troop deployment and basing data. Subsequent versions will hopefully include cross-national data on deploying countries.
Author: Michael Flynn [aut, cre]
Maintainer: Michael Flynn <meflynn@ksu.edu>
Diff between troopdata versions 1.0.1 dated 2024-08-20 and 1.0.2 dated 2024-09-10
troopdata-1.0.1/troopdata/tests/spelling.Rout.save |only troopdata-1.0.2/troopdata/DESCRIPTION | 6 +++--- troopdata-1.0.2/troopdata/MD5 | 7 +++---- troopdata-1.0.2/troopdata/NEWS.md | 4 ++++ troopdata-1.0.2/troopdata/README.md | 2 +- 5 files changed, 11 insertions(+), 8 deletions(-)
Title: A 'shiny' App for Test Analysis and Visualization
Description: This application provides exploratory and confirmatory factor analysis, classical test theory, unidimensional and multidimensional item response theory, and continuous item response model analysis, through the 'shiny' interactive interface. In addition, it offers rich functionalities for visualizing and downloading results. Users can download figures, tables, and analysis reports via the interactive interface.
Author: Youxiang Jiang [cre, aut, ths] ,
Qing Zeng [aut, ths],
Hongbo Wen [aut, ths]
Maintainer: Youxiang Jiang <jiangyouxiang34@163.com>
Diff between TestAnaAPP versions 1.0.1 dated 2024-05-18 and 1.1.1 dated 2024-09-10
DESCRIPTION | 26 MD5 | 31 NAMESPACE | 8 R/CFA_module.R |only R/CRM_module.R |only R/CTT_module.R |only R/DIF_module.R |only R/EFA_module.R |only R/IRT_info.R |only R/MIRT_module.R |only R/UIRT_module.R |only R/run_app.R | 1 R/server.R | 2305 +++++--------------------------------- R/ui.R | 536 +++++--- README.md | 20 inst/app/www/Functionality.png |only inst/app/www/HomePage.png |only inst/rmd/IRT_Analysis_Report.Rmd | 60 inst/rmd/MIRT_Analysis_Report.Rmd | 56 tests |only 20 files changed, 815 insertions(+), 2228 deletions(-)
Title: Diagnostics for OMOP Common Data Model Drug Records
Description: Ingredient specific diagnostics for drug exposure records in the Observational Medical Outcomes Partnership (OMOP) common data model.
Author: Ger Inberg [aut, cre] ,
Edward Burn [aut] ,
Theresa Burkard [aut] ,
Yuchen Guo [ctb] ,
Marti Catala [ctb] ,
Mike Du [ctb] ,
Xintong Li [ctb] ,
Ross Williams [ctb] ,
Erasmus MC [cph]
Maintainer: Ger Inberg <g.inberg@erasmusmc.nl>
Diff between DrugExposureDiagnostics versions 1.0.7 dated 2024-07-30 and 1.0.8 dated 2024-09-10
DESCRIPTION | 10 ++--- MD5 | 36 ++++++++++---------- NEWS.md | 3 + R/executeChecks.R | 28 +++++++++------ R/ingredientDescendantsInDb.R | 1 R/mockDrugExposure.R | 11 ++---- inst/doc/DaysSupply.html | 8 ++-- inst/doc/DiagnosticsSummary.html | 4 +- inst/doc/DrugDose.html | 4 +- inst/doc/DrugDuration.html | 8 ++-- inst/doc/DrugSig.html | 8 ++-- inst/doc/DrugSourceConcepts.html | 4 +- inst/doc/DrugTypes.html | 8 ++-- inst/doc/IntroductionToDrugExposureDiagnostics.html | 8 ++-- inst/doc/Missingness.html | 8 ++-- inst/doc/Quantity.html | 8 ++-- inst/doc/Routes.html | 8 ++-- inst/doc/VerbatimEndDate.html | 8 ++-- tests/testthat/test-executeChecks.R | 11 ++++++ 19 files changed, 101 insertions(+), 83 deletions(-)
More information about DrugExposureDiagnostics at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-01-15 0.1.2
2022-11-19 0.1.1
2022-11-11 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-06-10 0.2.12
2023-04-11 0.2.11
2023-02-27 0.2.8
2023-02-12 0.2.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-02-19 0.2.3