Title: Forecasting Models for Tidy Time Series
Description: Provides a collection of commonly used univariate and multivariate
time series forecasting models including automatically selected exponential
smoothing (ETS) and autoregressive integrated moving average (ARIMA) models.
These models work within the 'fable' framework provided by the 'fabletools'
package, which provides the tools to evaluate, visualise, and combine models
in a workflow consistent with the tidyverse.
Author: Mitchell O'Hara-Wild [aut, cre],
Rob Hyndman [aut],
Earo Wang [aut],
Gabriel Caceres [ctb] ,
Christoph Bergmeir [ctb] ,
Tim-Gunnar Hensel [ctb],
Timothy Hyndman [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between fable versions 0.3.4 dated 2024-03-15 and 0.4.0 dated 2024-09-24
fable-0.3.4/fable/tests/testthat/test-spelling.R |only fable-0.4.0/fable/DESCRIPTION | 12 +- fable-0.4.0/fable/MD5 | 48 ++++++----- fable-0.4.0/fable/NAMESPACE | 24 +++++ fable-0.4.0/fable/NEWS.md | 14 +++ fable-0.4.0/fable/R/VARIMA.R |only fable-0.4.0/fable/R/arima.R | 55 +++++++++++-- fable-0.4.0/fable/R/nnetar.R | 2 fable-0.4.0/fable/R/var.R | 96 ++++++++++++++++++++++- fable-0.4.0/fable/R/vecm.R |only fable-0.4.0/fable/README.md | 2 fable-0.4.0/fable/build/partial.rdb |binary fable-0.4.0/fable/build/vignette.rds |binary fable-0.4.0/fable/inst/WORDLIST | 8 - fable-0.4.0/fable/inst/doc/fable.html | 55 ++++++------- fable-0.4.0/fable/man/ARIMA.Rd | 26 +++++- fable-0.4.0/fable/man/IRF.ARIMA.Rd |only fable-0.4.0/fable/man/IRF.VAR.Rd |only fable-0.4.0/fable/man/IRF.VECM.Rd |only fable-0.4.0/fable/man/NNETAR.Rd | 2 fable-0.4.0/fable/man/VAR.Rd | 2 fable-0.4.0/fable/man/VARIMA.Rd |only fable-0.4.0/fable/man/VECM.Rd |only fable-0.4.0/fable/man/generate.VAR.Rd |only fable-0.4.0/fable/man/generate.VECM.Rd |only fable-0.4.0/fable/man/glance.VECM.Rd |only fable-0.4.0/fable/tests/spelling.R |only fable-0.4.0/fable/tests/testthat/test-ets.R | 1 fable-0.4.0/fable/tests/testthat/test-lm.R | 2 fable-0.4.0/fable/tests/testthat/test-nnetar.R | 1 fable-0.4.0/fable/tests/testthat/test-rw.R | 3 31 files changed, 278 insertions(+), 75 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management
system with support for the Structured Query Language (SQL). This
package includes all of DuckDB and an R Database Interface (DBI)
connector.
Author: Hannes Muehleisen [aut] ,
Mark Raasveldt [aut] ,
Kirill Mueller [cre] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrocher [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckdb versions 1.0.0-2 dated 2024-07-19 and 1.1.0 dated 2024-09-24
duckdb-1.0.0-2/duckdb/src/duckdb/src/common/http_state.cpp |only duckdb-1.0.0-2/duckdb/src/duckdb/src/core_functions/scalar/list/list_cosine_similarity.cpp |only duckdb-1.0.0-2/duckdb/src/duckdb/src/core_functions/scalar/list/list_inner_product.cpp |only duckdb-1.0.0-2/duckdb/src/duckdb/src/execution/index/art/node16.cpp |only duckdb-1.0.0-2/duckdb/src/duckdb/src/execution/index/art/node4.cpp |only duckdb-1.0.0-2/duckdb/src/duckdb/src/function/scalar/list/list_concat.cpp |only duckdb-1.0.0-2/duckdb/src/duckdb/src/include/duckdb/common/http_state.hpp |only duckdb-1.0.0-2/duckdb/src/duckdb/src/include/duckdb/common/platform.h |only duckdb-1.0.0-2/duckdb/src/duckdb/src/include/duckdb/common/serializer/deserialization_data.hpp |only duckdb-1.0.0-2/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node16.hpp |only duckdb-1.0.0-2/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node4.hpp |only duckdb-1.0.0-2/duckdb/src/duckdb/src/storage/statistics/numeric_stats_union.cpp |only duckdb-1.1.0/duckdb/DESCRIPTION | 9 duckdb-1.1.0/duckdb/MD5 | 2593 duckdb-1.1.0/duckdb/NAMESPACE | 2 duckdb-1.1.0/duckdb/NEWS.md | 9 duckdb-1.1.0/duckdb/R/backend-dbplyr__duckdb_connection.R | 93 duckdb-1.1.0/duckdb/R/cpp11.R | 4 duckdb-1.1.0/duckdb/R/relational.R | 18 duckdb-1.1.0/duckdb/inst/include/cpp11.hpp | 4 duckdb-1.1.0/duckdb/inst/include/cpp11/R.hpp | 73 duckdb-1.1.0/duckdb/inst/include/cpp11/altrep.hpp | 4 duckdb-1.1.0/duckdb/inst/include/cpp11/as.hpp | 4 duckdb-1.1.0/duckdb/inst/include/cpp11/attribute_proxy.hpp | 4 duckdb-1.1.0/duckdb/inst/include/cpp11/data_frame.hpp | 16 duckdb-1.1.0/duckdb/inst/include/cpp11/declarations.hpp | 4 duckdb-1.1.0/duckdb/inst/include/cpp11/doubles.hpp | 129 duckdb-1.1.0/duckdb/inst/include/cpp11/environment.hpp | 14 duckdb-1.1.0/duckdb/inst/include/cpp11/external_pointer.hpp | 12 duckdb-1.1.0/duckdb/inst/include/cpp11/function.hpp | 60 duckdb-1.1.0/duckdb/inst/include/cpp11/integers.hpp | 123 duckdb-1.1.0/duckdb/inst/include/cpp11/list.hpp | 140 duckdb-1.1.0/duckdb/inst/include/cpp11/list_of.hpp | 8 duckdb-1.1.0/duckdb/inst/include/cpp11/logicals.hpp | 123 duckdb-1.1.0/duckdb/inst/include/cpp11/matrix.hpp | 9 duckdb-1.1.0/duckdb/inst/include/cpp11/named_arg.hpp | 4 duckdb-1.1.0/duckdb/inst/include/cpp11/protect.hpp | 150 duckdb-1.1.0/duckdb/inst/include/cpp11/r_bool.hpp | 6 duckdb-1.1.0/duckdb/inst/include/cpp11/r_string.hpp | 4 duckdb-1.1.0/duckdb/inst/include/cpp11/r_vector.hpp | 1317 duckdb-1.1.0/duckdb/inst/include/cpp11/raws.hpp | 135 duckdb-1.1.0/duckdb/inst/include/cpp11/sexp.hpp | 40 duckdb-1.1.0/duckdb/inst/include/cpp11/strings.hpp | 133 duckdb-1.1.0/duckdb/man/backend-duckdb.Rd | 48 duckdb-1.1.0/duckdb/man/duckdb-package.Rd | 2 duckdb-1.1.0/duckdb/man/duckdb.Rd | 4 duckdb-1.1.0/duckdb/man/duckdb_read_csv.Rd | 4 duckdb-1.1.0/duckdb/src/Makevars | 2 duckdb-1.1.0/duckdb/src/Makevars.win | 2 duckdb-1.1.0/duckdb/src/cpp11.cpp | 8 duckdb-1.1.0/duckdb/src/database.cpp | 11 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/column_reader.cpp | 249 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/column_writer.cpp | 195 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/geo_parquet.cpp |only duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/include/boolean_column_reader.hpp | 21 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/include/column_reader.hpp | 49 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/include/column_writer.hpp | 21 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/include/expression_column_reader.hpp |only duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/include/geo_parquet.hpp |only duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/include/parquet_crypto.hpp | 21 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/include/parquet_decimal_utils.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/include/parquet_file_metadata_cache.hpp | 10 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/include/parquet_reader.hpp | 63 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/include/parquet_rle_bp_decoder.hpp | 6 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/include/parquet_rle_bp_encoder.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/include/parquet_timestamp.hpp | 8 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/include/parquet_writer.hpp | 28 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/include/resizable_buffer.hpp | 44 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/include/string_column_reader.hpp | 7 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/include/templated_column_reader.hpp | 62 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/parquet_crypto.cpp | 170 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/parquet_extension.cpp | 377 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/parquet_metadata.cpp | 8 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/parquet_reader.cpp | 191 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/parquet_statistics.cpp | 66 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/parquet_timestamp.cpp | 43 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/parquet_writer.cpp | 142 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/serialize_parquet.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/extension/parquet/zstd_file_system.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/catalog/catalog.cpp | 30 duckdb-1.1.0/duckdb/src/duckdb/src/catalog/catalog_entry.cpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/catalog/catalog_entry/duck_index_entry.cpp | 25 duckdb-1.1.0/duckdb/src/duckdb/src/catalog/catalog_entry/duck_schema_entry.cpp | 58 duckdb-1.1.0/duckdb/src/duckdb/src/catalog/catalog_entry/duck_table_entry.cpp | 170 duckdb-1.1.0/duckdb/src/duckdb/src/catalog/catalog_entry/index_catalog_entry.cpp | 12 duckdb-1.1.0/duckdb/src/duckdb/src/catalog/catalog_entry/macro_catalog_entry.cpp | 13 duckdb-1.1.0/duckdb/src/duckdb/src/catalog/catalog_entry/schema_catalog_entry.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/catalog/catalog_entry/table_catalog_entry.cpp | 14 duckdb-1.1.0/duckdb/src/duckdb/src/catalog/catalog_set.cpp | 33 duckdb-1.1.0/duckdb/src/duckdb/src/catalog/default/default_functions.cpp | 347 duckdb-1.1.0/duckdb/src/duckdb/src/catalog/default/default_generator.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/catalog/default/default_schemas.cpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/catalog/default/default_table_functions.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/catalog/default/default_views.cpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/catalog/duck_catalog.cpp | 8 duckdb-1.1.0/duckdb/src/duckdb/src/common/adbc/adbc.cpp | 178 duckdb-1.1.0/duckdb/src/duckdb/src/common/allocator.cpp | 77 duckdb-1.1.0/duckdb/src/duckdb/src/common/arrow/appender/bool_data.cpp | 15 duckdb-1.1.0/duckdb/src/duckdb/src/common/arrow/appender/fixed_size_list_data.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/common/arrow/appender/union_data.cpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/common/arrow/arrow_appender.cpp | 76 duckdb-1.1.0/duckdb/src/duckdb/src/common/arrow/arrow_converter.cpp | 95 duckdb-1.1.0/duckdb/src/duckdb/src/common/arrow/arrow_merge_event.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/common/arrow/arrow_query_result.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/common/arrow/physical_arrow_batch_collector.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/common/arrow/physical_arrow_collector.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/common/arrow/schema_metadata.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/common/cgroups.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/common/compressed_file_system.cpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/common/encryption_state.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/common/enum_util.cpp | 696 duckdb-1.1.0/duckdb/src/duckdb/src/common/enums/file_compression_type.cpp | 24 duckdb-1.1.0/duckdb/src/duckdb/src/common/enums/metric_type.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/common/enums/optimizer_type.cpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/common/enums/physical_operator_type.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/common/enums/relation_type.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/common/enums/statement_type.cpp | 15 duckdb-1.1.0/duckdb/src/duckdb/src/common/error_data.cpp | 42 duckdb-1.1.0/duckdb/src/duckdb/src/common/exception.cpp | 12 duckdb-1.1.0/duckdb/src/duckdb/src/common/exception/binder_exception.cpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/common/extra_type_info.cpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/common/file_buffer.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/common/file_system.cpp | 28 duckdb-1.1.0/duckdb/src/duckdb/src/common/filename_pattern.cpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/common/fsst.cpp | 29 duckdb-1.1.0/duckdb/src/duckdb/src/common/gzip_file_system.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/common/hive_partitioning.cpp | 146 duckdb-1.1.0/duckdb/src/duckdb/src/common/http_util.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/common/local_file_system.cpp | 74 duckdb-1.1.0/duckdb/src/duckdb/src/common/multi_file_list.cpp | 135 duckdb-1.1.0/duckdb/src/duckdb/src/common/multi_file_reader.cpp | 117 duckdb-1.1.0/duckdb/src/duckdb/src/common/operator/cast_operators.cpp | 167 duckdb-1.1.0/duckdb/src/duckdb/src/common/operator/string_cast.cpp | 53 duckdb-1.1.0/duckdb/src/duckdb/src/common/progress_bar/progress_bar.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/common/progress_bar/terminal_progress_bar_display.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/common/radix_partitioning.cpp | 52 duckdb-1.1.0/duckdb/src/duckdb/src/common/random_engine.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/common/re2_regex.cpp | 59 duckdb-1.1.0/duckdb/src/duckdb/src/common/render_tree.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/common/row_operations/row_aggregate.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/common/row_operations/row_gather.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/common/row_operations/row_matcher.cpp | 63 duckdb-1.1.0/duckdb/src/duckdb/src/common/row_operations/row_radix_scatter.cpp | 122 duckdb-1.1.0/duckdb/src/duckdb/src/common/serializer/binary_deserializer.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/common/serializer/buffered_file_reader.cpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/common/serializer/buffered_file_writer.cpp | 27 duckdb-1.1.0/duckdb/src/duckdb/src/common/serializer/memory_stream.cpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/common/sort/partition_state.cpp | 51 duckdb-1.1.0/duckdb/src/duckdb/src/common/sort/radix_sort.cpp | 37 duckdb-1.1.0/duckdb/src/duckdb/src/common/sort/sort_state.cpp | 35 duckdb-1.1.0/duckdb/src/duckdb/src/common/sort/sorted_block.cpp | 21 duckdb-1.1.0/duckdb/src/duckdb/src/common/string_util.cpp | 177 duckdb-1.1.0/duckdb/src/duckdb/src/common/tree_renderer |only duckdb-1.1.0/duckdb/src/duckdb/src/common/tree_renderer.cpp | 524 duckdb-1.1.0/duckdb/src/duckdb/src/common/types.cpp | 132 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/batched_data_collection.cpp | 87 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/bit.cpp | 46 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/blob.cpp | 26 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/column/column_data_allocator.cpp | 27 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/column/column_data_collection.cpp | 8 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/column/column_data_collection_segment.cpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/column/column_data_consumer.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/column/partitioned_column_data.cpp | 91 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/data_chunk.cpp | 11 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/date.cpp | 27 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/decimal.cpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/hugeint.cpp | 14 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/hyperloglog.cpp | 443 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/interval.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/list_segment.cpp | 132 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/row/partitioned_tuple_data.cpp | 105 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/row/row_data_collection.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/row/row_data_collection_scanner.cpp | 24 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/row/tuple_data_allocator.cpp | 33 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/row/tuple_data_collection.cpp | 43 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/row/tuple_data_scatter_gather.cpp | 254 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/row/tuple_data_segment.cpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/selection_vector.cpp | 18 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/time.cpp | 93 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/timestamp.cpp | 82 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/uuid.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/validity_mask.cpp | 45 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/value.cpp | 58 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/varint.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/common/types/vector.cpp | 217 duckdb-1.1.0/duckdb/src/duckdb/src/common/types/vector_buffer.cpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/common/vector_operations/vector_copy.cpp | 38 duckdb-1.1.0/duckdb/src/duckdb/src/common/vector_operations/vector_hash.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/common/virtual_file_system.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/aggregate/distributive/approx_count.cpp | 117 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/aggregate/distributive/arg_min_max.cpp | 325 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/aggregate/distributive/entropy.cpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/aggregate/distributive/minmax.cpp | 564 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/aggregate/distributive/sum.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/aggregate/holistic/approx_top_k.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/aggregate/holistic/approximate_quantile.cpp | 84 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/aggregate/holistic/mad.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/aggregate/holistic/mode.cpp | 233 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/aggregate/holistic/quantile.cpp | 1936 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/aggregate/nested/binned_histogram.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/aggregate/nested/histogram.cpp | 297 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/function_list.cpp | 43 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/lambda_functions.cpp | 12 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/array/array_functions.cpp | 384 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/blob/create_sort_key.cpp | 395 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/date/date_diff.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/date/date_part.cpp | 118 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/date/date_trunc.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/date/make_date.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/date/strftime.cpp | 204 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/date/to_interval.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/enum/enum_functions.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/generic/can_implicitly_cast.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/generic/error.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/generic/least.cpp | 221 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/generic/typeof.cpp | 13 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/list/array_slice.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/list/list_aggregates.cpp | 134 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/list/list_distance.cpp | 133 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/list/list_has_any_or_all.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/list/list_reduce.cpp | 39 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/list/list_sort.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/list/list_value.cpp | 114 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/map/map_contains.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/map/map_extract.cpp | 191 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/math/numeric.cpp | 100 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/operators/bitwise.cpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/random/setseed.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/string/bar.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/string/hex.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/string/md5.cpp | 47 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/string/printf.cpp | 20 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/string/repeat.cpp | 45 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/string/reverse.cpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/string/sha1.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/string/sha256.cpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/string/url_encode.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/struct/struct_pack.cpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/core_functions/scalar/union/union_extract.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/execution/adaptive_filter.cpp | 41 duckdb-1.1.0/duckdb/src/duckdb/src/execution/aggregate_hashtable.cpp | 31 duckdb-1.1.0/duckdb/src/duckdb/src/execution/expression_executor.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/execution/expression_executor/execute_conjunction.cpp | 13 duckdb-1.1.0/duckdb/src/duckdb/src/execution/index/art/art.cpp | 1367 duckdb-1.1.0/duckdb/src/duckdb/src/execution/index/art/art_key.cpp | 159 duckdb-1.1.0/duckdb/src/duckdb/src/execution/index/art/base_leaf.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/execution/index/art/base_node.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/execution/index/art/iterator.cpp | 225 duckdb-1.1.0/duckdb/src/duckdb/src/execution/index/art/leaf.cpp | 428 duckdb-1.1.0/duckdb/src/duckdb/src/execution/index/art/node.cpp | 744 duckdb-1.1.0/duckdb/src/duckdb/src/execution/index/art/node256.cpp | 122 duckdb-1.1.0/duckdb/src/duckdb/src/execution/index/art/node256_leaf.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/execution/index/art/node48.cpp | 218 duckdb-1.1.0/duckdb/src/duckdb/src/execution/index/art/prefix.cpp | 684 duckdb-1.1.0/duckdb/src/duckdb/src/execution/index/bound_index.cpp | 8 duckdb-1.1.0/duckdb/src/duckdb/src/execution/index/fixed_size_allocator.cpp | 40 duckdb-1.1.0/duckdb/src/duckdb/src/execution/index/fixed_size_buffer.cpp | 95 duckdb-1.1.0/duckdb/src/duckdb/src/execution/join_hashtable.cpp | 816 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/aggregate/aggregate_object.cpp | 8 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_hash_aggregate.cpp | 25 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_perfecthash_aggregate.cpp | 21 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_streaming_window.cpp | 659 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_ungrouped_aggregate.cpp | 285 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_window.cpp | 839 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/buffer_manager/csv_buffer.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/buffer_manager/csv_buffer_manager.cpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/buffer_manager/csv_file_handle.cpp | 11 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/scanner/base_scanner.cpp | 30 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/scanner/column_count_scanner.cpp | 76 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/scanner/csv_schema.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/scanner/scanner_boundary.cpp | 50 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/scanner/skip_scanner.cpp | 27 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/scanner/string_value_scanner.cpp | 387 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/csv_sniffer.cpp | 117 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/dialect_detection.cpp | 368 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/header_detection.cpp | 145 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/type_detection.cpp | 192 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/type_refinement.cpp | 43 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/type_replacement.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/state_machine/csv_state_machine_cache.cpp | 96 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/table_function/csv_file_scanner.cpp | 139 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/table_function/global_csv_state.cpp | 138 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/util/csv_error.cpp | 212 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/util/csv_reader_options.cpp | 76 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/filter/physical_filter.cpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/helper/physical_batch_collector.cpp | 21 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/helper/physical_buffered_batch_collector.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/helper/physical_buffered_collector.cpp | 18 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/helper/physical_explain_analyze.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/helper/physical_load.cpp | 16 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/helper/physical_materialized_collector.cpp | 16 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/helper/physical_reservoir_sample.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/helper/physical_reset.cpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/helper/physical_result_collector.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/helper/physical_set_variable.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/helper/physical_streaming_sample.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/helper/physical_transaction.cpp | 21 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/join/outer_join_marker.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/join/perfect_hash_join_executor.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/join/physical_asof_join.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/join/physical_blockwise_nl_join.cpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/join/physical_comparison_join.cpp | 82 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/join/physical_delim_join.cpp | 11 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/join/physical_hash_join.cpp | 509 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/join/physical_iejoin.cpp | 91 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/join/physical_join.cpp | 24 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/join/physical_left_delim_join.cpp | 14 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/join/physical_nested_loop_join.cpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/join/physical_piecewise_merge_join.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/join/physical_range_join.cpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/join/physical_right_delim_join.cpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/order/physical_order.cpp | 29 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/order/physical_top_n.cpp | 21 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_batch_copy_to_file.cpp | 52 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_batch_insert.cpp | 28 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_copy_database.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_copy_to_file.cpp | 203 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_insert.cpp | 12 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_update.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/projection/physical_pivot.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/projection/physical_projection.cpp | 19 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/projection/physical_tableinout_function.cpp | 25 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/projection/physical_unnest.cpp | 22 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/scan/physical_column_data_scan.cpp | 59 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/scan/physical_table_scan.cpp | 98 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/schema/physical_attach.cpp | 82 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/schema/physical_create_art_index.cpp | 85 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/set/physical_cte.cpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/set/physical_recursive_cte.cpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/execution/operator/set/physical_union.cpp | 22 duckdb-1.1.0/duckdb/src/duckdb/src/execution/perfect_aggregate_hashtable.cpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/execution/physical_operator.cpp | 49 duckdb-1.1.0/duckdb/src/duckdb/src/execution/physical_plan/plan_comparison_join.cpp | 25 duckdb-1.1.0/duckdb/src/duckdb/src/execution/physical_plan/plan_copy_to_file.cpp | 11 duckdb-1.1.0/duckdb/src/duckdb/src/execution/physical_plan/plan_delim_join.cpp | 19 duckdb-1.1.0/duckdb/src/duckdb/src/execution/physical_plan/plan_explain.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/execution/physical_plan/plan_get.cpp | 130 duckdb-1.1.0/duckdb/src/duckdb/src/execution/physical_plan/plan_limit.cpp | 21 duckdb-1.1.0/duckdb/src/duckdb/src/execution/physical_plan/plan_set.cpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/execution/physical_plan/plan_window.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/execution/physical_plan_generator.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/execution/radix_partitioned_hashtable.cpp | 98 duckdb-1.1.0/duckdb/src/duckdb/src/execution/reservoir_sample.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/execution/window_executor.cpp | 872 duckdb-1.1.0/duckdb/src/duckdb/src/execution/window_segment_tree.cpp | 1547 duckdb-1.1.0/duckdb/src/duckdb/src/function/aggregate/distributive/count.cpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/function/aggregate/distributive/first.cpp | 187 duckdb-1.1.0/duckdb/src/duckdb/src/function/aggregate/sorted_aggregate_function.cpp | 19 duckdb-1.1.0/duckdb/src/duckdb/src/function/aggregate_function.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/function/cast/cast_function_set.cpp | 11 duckdb-1.1.0/duckdb/src/duckdb/src/function/cast/decimal_cast.cpp | 11 duckdb-1.1.0/duckdb/src/duckdb/src/function/cast/default_casts.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/function/cast/numeric_casts.cpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/function/cast/string_cast.cpp | 13 duckdb-1.1.0/duckdb/src/duckdb/src/function/cast/time_casts.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/function/cast/union_casts.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/function/cast/varint_casts.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/function/cast/vector_cast_helpers.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/function/cast_rules.cpp | 119 duckdb-1.1.0/duckdb/src/duckdb/src/function/compression_config.cpp | 68 duckdb-1.1.0/duckdb/src/duckdb/src/function/copy_function.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/function/function_binder.cpp | 50 duckdb-1.1.0/duckdb/src/duckdb/src/function/macro_function.cpp | 107 duckdb-1.1.0/duckdb/src/duckdb/src/function/pragma/pragma_queries.cpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/function/scalar/compressed_materialization/compress_string.cpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/function/scalar/generic/binning.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/function/scalar/generic/getvariable.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/function/scalar/generic_functions.cpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/function/scalar/list/contains_or_position.cpp | 80 duckdb-1.1.0/duckdb/src/duckdb/src/function/scalar/list/list_extract.cpp | 213 duckdb-1.1.0/duckdb/src/duckdb/src/function/scalar/list/list_resize.cpp | 177 duckdb-1.1.0/duckdb/src/duckdb/src/function/scalar/list/list_zip.cpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/function/scalar/operators/arithmetic.cpp | 35 duckdb-1.1.0/duckdb/src/duckdb/src/function/scalar/sequence/nextval.cpp | 8 duckdb-1.1.0/duckdb/src/duckdb/src/function/scalar/strftime_format.cpp | 253 duckdb-1.1.0/duckdb/src/duckdb/src/function/scalar/string/caseconvert.cpp | 16 duckdb-1.1.0/duckdb/src/duckdb/src/function/scalar/string/concat.cpp | 366 duckdb-1.1.0/duckdb/src/duckdb/src/function/scalar/string/concat_ws.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/function/scalar/string/contains.cpp | 25 duckdb-1.1.0/duckdb/src/duckdb/src/function/scalar/string/like.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/function/scalar/string/substring.cpp | 17 duckdb-1.1.0/duckdb/src/duckdb/src/function/scalar/string_functions.cpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/function/scalar/struct/struct_extract.cpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/function/scalar/system/aggregate_export.cpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/function/scalar_function.cpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/function/scalar_macro_function.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/function/table/arrow.cpp | 246 duckdb-1.1.0/duckdb/src/duckdb/src/function/table/arrow/arrow_duck_schema.cpp | 59 duckdb-1.1.0/duckdb/src/duckdb/src/function/table/arrow/arrow_type_info.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/function/table/arrow_conversion.cpp | 281 duckdb-1.1.0/duckdb/src/duckdb/src/function/table/copy_csv.cpp | 57 duckdb-1.1.0/duckdb/src/duckdb/src/function/table/query_function.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/function/table/range.cpp | 368 duckdb-1.1.0/duckdb/src/duckdb/src/function/table/read_csv.cpp | 38 duckdb-1.1.0/duckdb/src/duckdb/src/function/table/sniff_csv.cpp | 90 duckdb-1.1.0/duckdb/src/duckdb/src/function/table/system/duckdb_constraints.cpp | 270 duckdb-1.1.0/duckdb/src/duckdb/src/function/table/system/duckdb_extensions.cpp | 39 duckdb-1.1.0/duckdb/src/duckdb/src/function/table/system/duckdb_functions.cpp | 34 duckdb-1.1.0/duckdb/src/duckdb/src/function/table/system/duckdb_indexes.cpp | 16 duckdb-1.1.0/duckdb/src/duckdb/src/function/table/system/duckdb_variables.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/function/table/system/test_all_types.cpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/function/table/system/test_vector_types.cpp | 36 duckdb-1.1.0/duckdb/src/duckdb/src/function/table/system_functions.cpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/function/table/table_scan.cpp | 67 duckdb-1.1.0/duckdb/src/duckdb/src/function/table/unnest.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/function/table/version/pragma_version.cpp | 8 duckdb-1.1.0/duckdb/src/duckdb/src/function/table_function.cpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/function/table_macro_function.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb.h | 2308 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog.hpp | 12 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/duck_index_entry.hpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/duck_schema_entry.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/index_catalog_entry.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/macro_catalog_entry.hpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/table_catalog_entry.hpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/catalog/default/builtin_types/types.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/catalog/default/default_functions.hpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/catalog/default/default_generator.hpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/catalog/default/default_schemas.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/catalog/default/default_table_functions.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/catalog/duck_catalog.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/catalog/similar_catalog_entry.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/allocator.hpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/array_ptr.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/appender/append_data.hpp | 48 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/appender/enum_data.hpp | 17 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/appender/list.hpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/appender/list_data.hpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/appender/list_view_data.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/appender/map_data.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/appender/scalar_data.hpp | 30 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/appender/varchar_data.hpp | 101 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/arrow_appender.hpp | 12 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/arrow_buffer.hpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/arrow_merge_event.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/arrow_query_result.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/physical_arrow_batch_collector.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/physical_arrow_collector.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/schema_metadata.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/bswap.hpp | 34 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/cgroups.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/compressed_file_system.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/dl.hpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/encryption_state.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/enum_util.hpp | 88 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/enums/checkpoint_type.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/enums/copy_overwrite_mode.hpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/enums/destroy_buffer_upon.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/enums/explain_format.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/enums/file_compression_type.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/enums/join_type.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/enums/metric_type.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/enums/optimizer_type.hpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/enums/pending_execution_result.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/enums/physical_operator_type.hpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/enums/profiler_format.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/enums/relation_type.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/enums/set_scope.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/enums/statement_type.hpp | 25 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/enums/stream_execution_result.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/enums/tableref_type.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/enums/wal_type.hpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/error_data.hpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/exception.hpp | 22 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/exception/binder_exception.hpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/extra_operator_info.hpp | 12 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/file_buffer.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/file_open_flags.hpp | 16 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/file_opener.hpp | 18 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/file_system.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/filename_pattern.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/fixed_size_map.hpp | 256 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/fsst.hpp | 11 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/helper.hpp | 30 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/hive_partitioning.hpp | 21 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/http_util.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/insertion_order_preserving_map.hpp | 25 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/limits.hpp | 11 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/multi_file_list.hpp | 44 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/multi_file_reader.hpp | 11 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/multi_file_reader_options.hpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/numeric_utils.hpp | 132 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/operator/abs.hpp | 11 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/operator/cast_operators.hpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/operator/decimal_cast_operators.hpp | 24 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/operator/double_cast_operator.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/operator/integer_cast_operator.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/operator/numeric_cast.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/operator/string_cast.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/optional_ptr.hpp | 15 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/optionally_owned_ptr.hpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/owning_string_map.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/perfect_map_set.hpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/platform.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/radix.hpp | 199 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/radix_partitioning.hpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/random_engine.hpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/re2_regex.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/render_tree.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/row_operations/row_matcher.hpp | 12 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/binary_serializer.hpp | 8 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/buffered_file_writer.hpp | 8 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/deserializer.hpp | 22 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/memory_stream.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/serialization_data.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/serializer.hpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/sort/duckdb_pdqsort.hpp | 21 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/sort/partition_state.hpp | 18 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/string_util.hpp | 44 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/tree_renderer |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/tree_renderer.hpp | 132 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/type_visitor.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/typedefs.hpp | 12 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types.hpp | 45 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/arrow_string_view_type.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/batched_data_collection.hpp | 37 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/bit.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/cast_helpers.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/column/column_data_allocator.hpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/column/partitioned_column_data.hpp | 52 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/data_chunk.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/date.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/date_lookup_cache.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/datetime.hpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/hyperloglog.hpp | 89 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/interval.hpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/list_segment.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/row/partitioned_tuple_data.hpp | 50 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/row/row_data_collection.hpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/row/row_data_collection_scanner.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/row/tuple_data_allocator.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/row/tuple_data_collection.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/row/tuple_data_states.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/selection_vector.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/string_type.hpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/time.hpp | 17 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/timestamp.hpp | 16 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/validity_mask.hpp | 115 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/value.hpp | 15 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/varint.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/vector.hpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/types/vector_buffer.hpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/union_by_name.hpp | 52 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/generic_executor.hpp | 29 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/unary_executor.hpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/vector_operations.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/common/winapi.hpp | 8 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/core_functions/aggregate/algebraic/covar.hpp | 12 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/core_functions/aggregate/algebraic/stddev.hpp | 12 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/core_functions/aggregate/distributive_functions.hpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/core_functions/aggregate/histogram_helpers.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/core_functions/aggregate/holistic_functions.hpp | 23 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/core_functions/aggregate/minmax_n_helpers.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/core_functions/aggregate/nested_functions.hpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/core_functions/aggregate/quantile_helpers.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/core_functions/aggregate/quantile_sort_tree.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/core_functions/aggregate/quantile_state.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/core_functions/aggregate/regression/regr_slope.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/core_functions/aggregate/sort_key_helpers.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/core_functions/array_kernels.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/core_functions/create_sort_key.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/core_functions/lambda_functions.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/core_functions/scalar/array_functions.hpp | 24 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/core_functions/scalar/date_functions.hpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/core_functions/scalar/generic_functions.hpp | 27 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/core_functions/scalar/list_functions.hpp | 88 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/core_functions/scalar/map_functions.hpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/core_functions/scalar/math_functions.hpp | 54 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/core_functions/scalar/string_functions.hpp | 51 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/adaptive_filter.hpp | 39 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/aggregate_hashtable.hpp | 50 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/executor.hpp | 27 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/ht_entry.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/art.hpp | 193 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/art_key.hpp | 68 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/base_leaf.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/base_node.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/iterator.hpp | 67 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/leaf.hpp | 99 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node.hpp | 205 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node256.hpp | 73 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node256_leaf.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node48.hpp | 87 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/prefix.hpp | 153 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/index/bound_index.hpp | 13 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/index/fixed_size_allocator.hpp | 58 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/index/fixed_size_buffer.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/index/index_pointer.hpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/join_hashtable.hpp | 150 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/merge_sort_tree.hpp | 225 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/aggregate_object.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_hash_aggregate.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_perfecthash_aggregate.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_streaming_window.hpp | 21 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_ungrouped_aggregate.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_window.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/ungrouped_aggregate_state.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/base_scanner.hpp | 104 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/column_count_scanner.hpp | 35 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_buffer_manager.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_error.hpp | 53 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_file_handle.hpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_file_scanner.hpp | 53 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_option.hpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_reader_options.hpp | 34 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_schema.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_sniffer.hpp | 118 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_state.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_state_machine.hpp | 19 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_state_machine_cache.hpp | 16 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/global_csv_state.hpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/header_value.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/scanner_boundary.hpp | 15 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/skip_scanner.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/state_machine_options.hpp | 8 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/string_value_scanner.hpp | 55 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/filter/physical_filter.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_batch_collector.hpp | 21 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_buffered_batch_collector.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_buffered_collector.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_explain_analyze.hpp | 8 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_materialized_collector.hpp | 18 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_reservoir_sample.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_result_collector.hpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_set.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_set_variable.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_streaming_sample.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/join_filter_pushdown.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_blockwise_nl_join.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_comparison_join.hpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_delim_join.hpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_hash_join.hpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_iejoin.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_join.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_left_delim_join.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_range_join.hpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_right_delim_join.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/order/physical_order.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/order/physical_top_n.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/batch_memory_manager.hpp | 42 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_batch_copy_to_file.hpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_copy_to_file.hpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/projection/physical_projection.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/projection/physical_tableinout_function.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_column_data_scan.hpp | 12 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_table_scan.hpp | 14 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_art_index.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/set/physical_cte.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/set/physical_recursive_cte.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/physical_operator.hpp | 27 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/physical_operator_states.hpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/physical_plan_generator.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/window_executor.hpp | 249 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/execution/window_segment_tree.hpp | 185 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/aggregate_function.hpp | 25 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/cast/default_casts.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/compression/compression.hpp | 20 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/compression_function.hpp | 44 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/copy_function.hpp | 35 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/function_binder.hpp | 8 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/function_serialization.hpp | 42 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/macro_function.hpp | 20 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/pragma/pragma_functions.hpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/replacement_scan.hpp | 24 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/generic_functions.hpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/list/contains_or_position.hpp | 184 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/nested_functions.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/strftime_format.hpp | 37 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/string_functions.hpp | 17 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/scalar_function.hpp | 42 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/scalar_macro_function.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/table/arrow.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/table/arrow/arrow_duck_schema.hpp | 68 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/table/arrow/arrow_type_info.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/table/arrow/enum |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/table/range.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/table/read_csv.hpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/table/system_functions.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/table/table_scan.hpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/table_function.hpp | 16 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/function/table_macro_function.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/appender.hpp | 18 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/attached_database.hpp | 32 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/buffered_data/batched_buffered_data.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/buffered_data/buffered_data.hpp | 30 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/buffered_data/simple_buffered_data.hpp | 23 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/capi/capi_internal.hpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/capi/cast/generic.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/capi/cast/utils.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/capi/extension_api.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/chunk_scan_state/batched_data_collection.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/client_config.hpp | 70 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/client_context.hpp | 52 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/client_context_state.hpp | 80 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/client_properties.hpp | 12 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/config.hpp | 62 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/connection.hpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/database.hpp | 21 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/database_manager.hpp | 17 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/db_instance_cache.hpp | 27 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/extension.hpp | 20 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/extension_entries.hpp | 25 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/extension_helper.hpp | 52 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/extension_install_info.hpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/extension_util.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/pending_query_result.hpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/prepared_statement.hpp | 11 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/prepared_statement_data.hpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/profiling_info.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/profiling_node.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/query_profiler.hpp | 106 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/query_result.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/relation.hpp | 11 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/relation/create_table_relation.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/relation/delim_get_relation.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/relation/explain_relation.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/relation/join_relation.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/relation/materialized_relation.hpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/relation/query_relation.hpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/relation/read_json_relation.hpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/relation/table_function_relation.hpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/relation/view_relation.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/secret/default_secrets.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/secret/secret.hpp | 108 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/secret/secret_manager.hpp | 18 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/settings.hpp | 230 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/main/stream_query_result.hpp | 8 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/optimizer/build_probe_side_optimizer.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/optimizer/compressed_materialization.hpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/optimizer/cte_filter_pusher.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/optimizer/filter_combiner.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/optimizer/filter_pushdown.hpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_filter_pushdown_optimizer.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/cardinality_estimator.hpp | 61 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/cost_model.hpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/join_order_optimizer.hpp | 22 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/query_graph.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/query_graph_manager.hpp | 28 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/relation_manager.hpp | 13 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/optimizer/limit_pushdown.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/optimizer/optimizer.hpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/join_dependent_filter.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parallel/executor_task.hpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parallel/interrupt.hpp | 56 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parallel/meta_pipeline.hpp | 35 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parallel/pipeline.hpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parallel/pipeline_prepare_finish_event.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parallel/task_executor.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parallel/task_scheduler.hpp | 11 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/function_expression.hpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/star_expression.hpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_table_info.hpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/attach_info.hpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_index_info.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_macro_info.hpp | 12 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/transaction_info.hpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_expression_iterator.hpp | 17 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parser/parser_extension.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parser/sql_statement.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/copy_statement.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/explain_statement.hpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/set_statement.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/transaction_statement.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/basetableref.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/column_data_ref.hpp | 16 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/delimgetref.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/joinref.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/pivotref.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/subqueryref.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/table_function_ref.hpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/parser/transformer.hpp | 26 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/binder.hpp | 38 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/collation_binding.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_aggregate_expression.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_between_expression.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_case_expression.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_cast_expression.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_columnref_expression.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_comparison_expression.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_conjunction_expression.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_constant_expression.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_default_expression.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_expanded_expression.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_function_expression.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_lambda_expression.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_lambdaref_expression.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_operator_expression.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_parameter_data.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_parameter_expression.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_reference_expression.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_subquery_expression.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_unnest_expression.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_window_expression.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder.hpp | 30 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/column_alias_binder.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/group_binder.hpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/order_binder.hpp | 11 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/where_binder.hpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/filter/conjunction_filter.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/filter/constant_filter.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/filter/null_filter.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/filter/struct_filter.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/logical_operator.hpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/logical_operator_visitor.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_aggregate.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_any_join.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_comparison_join.hpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_copy_to_file.hpp | 12 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_cteref.hpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_delim_get.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_distinct.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_execute.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_explain.hpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_get.hpp | 20 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_materialized_cte.hpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_order.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/subquery/flatten_dependent_join.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/table_filter.hpp | 26 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_delimgetref.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_joinref.hpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_subqueryref.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_table_function.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/list.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/arena_allocator.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/block.hpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/block_manager.hpp | 51 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer/block_handle.hpp | 28 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer/buffer_pool.hpp | 116 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer_manager.hpp | 19 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/row_group_writer.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/string_checkpoint_state.hpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/table_data_writer.hpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/write_overflow_strings_to_disk.hpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint_manager.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/alp/algorithm/alp.hpp | 8 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/alp/alp_analyze.hpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/alp/alp_compress.hpp | 36 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/alp/alp_constants.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/alp/alp_scan.hpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/alp/alp_utils.hpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/alprd/algorithm/alprd.hpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/alprd/alprd_analyze.hpp | 24 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/alprd/alprd_compress.hpp | 38 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/alprd/alprd_scan.hpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/chimp_scan.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/patas/patas_scan.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/data_pointer.hpp | 12 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/data_table.hpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/in_memory_block_manager.hpp | 15 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/index_storage_info.hpp | 24 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/metadata/metadata_manager.hpp | 14 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/partial_block_manager.hpp | 11 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/segment/uncompressed.hpp | 11 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/single_file_block_manager.hpp | 33 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/standard_buffer_manager.hpp | 29 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/base_statistics.hpp | 17 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/distinct_statistics.hpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/numeric_stats.hpp | 21 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/numeric_stats_union.hpp | 64 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/string_stats.hpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/storage_info.hpp | 48 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/storage_manager.hpp | 30 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/string_uncompressed.hpp | 45 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/table/append_state.hpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/table/array_column_data.hpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/table/chunk_info.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/table/column_checkpoint_state.hpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/table/column_data.hpp | 83 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/table/column_segment.hpp | 34 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/table/data_table_info.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/table/list_column_data.hpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/table/row_group.hpp | 22 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/table/row_group_collection.hpp | 8 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/table/row_version_manager.hpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/table/scan_state.hpp | 103 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/table/standard_column_data.hpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/table/struct_column_data.hpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/table/table_index_list.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/table/validity_column_data.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/temporary_memory_manager.hpp | 48 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/storage/write_ahead_log.hpp | 18 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/transaction/cleanup_state.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/transaction/commit_state.hpp | 20 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/transaction/duck_transaction.hpp | 31 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/transaction/duck_transaction_manager.hpp | 11 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/transaction/local_storage.hpp | 8 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/transaction/meta_transaction.hpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/transaction/transaction_context.hpp | 8 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/transaction/undo_buffer.hpp | 8 duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb/transaction/wal_write_state.hpp |only duckdb-1.1.0/duckdb/src/duckdb/src/include/duckdb_extension.h |only duckdb-1.1.0/duckdb/src/duckdb/src/main/appender.cpp | 60 duckdb-1.1.0/duckdb/src/duckdb/src/main/attached_database.cpp | 104 duckdb-1.1.0/duckdb/src/duckdb/src/main/buffered_data/batched_buffered_data.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/main/buffered_data/buffered_data.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/main/buffered_data/simple_buffered_data.cpp | 71 duckdb-1.1.0/duckdb/src/duckdb/src/main/capi/aggregate_function-c.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/main/capi/appender-c.cpp | 18 duckdb-1.1.0/duckdb/src/duckdb/src/main/capi/cast/utils-c.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/main/capi/cast_function-c.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/main/capi/config-c.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/main/capi/data_chunk-c.cpp | 25 duckdb-1.1.0/duckdb/src/duckdb/src/main/capi/duckdb_value-c.cpp | 247 duckdb-1.1.0/duckdb/src/duckdb/src/main/capi/helper-c.cpp | 62 duckdb-1.1.0/duckdb/src/duckdb/src/main/capi/logical_types-c.cpp | 151 duckdb-1.1.0/duckdb/src/duckdb/src/main/capi/pending-c.cpp | 13 duckdb-1.1.0/duckdb/src/duckdb/src/main/capi/prepared-c.cpp | 25 duckdb-1.1.0/duckdb/src/duckdb/src/main/capi/profiling_info-c.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/main/capi/result-c.cpp | 176 duckdb-1.1.0/duckdb/src/duckdb/src/main/capi/scalar_function-c.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/main/capi/table_description-c.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/main/capi/table_function-c.cpp | 256 duckdb-1.1.0/duckdb/src/duckdb/src/main/capi/value-c.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/main/chunk_scan_state/batched_data_collection.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/main/client_config.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/main/client_context.cpp | 119 duckdb-1.1.0/duckdb/src/duckdb/src/main/client_data.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/main/config.cpp | 182 duckdb-1.1.0/duckdb/src/duckdb/src/main/connection.cpp | 16 duckdb-1.1.0/duckdb/src/duckdb/src/main/database.cpp | 131 duckdb-1.1.0/duckdb/src/duckdb/src/main/database_manager.cpp | 50 duckdb-1.1.0/duckdb/src/duckdb/src/main/database_path_and_type.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/main/db_instance_cache.cpp | 73 duckdb-1.1.0/duckdb/src/duckdb/src/main/extension.cpp | 77 duckdb-1.1.0/duckdb/src/duckdb/src/main/extension/extension_helper.cpp | 89 duckdb-1.1.0/duckdb/src/duckdb/src/main/extension/extension_install.cpp | 248 duckdb-1.1.0/duckdb/src/duckdb/src/main/extension/extension_load.cpp | 206 duckdb-1.1.0/duckdb/src/duckdb/src/main/extension/extension_util.cpp | 8 duckdb-1.1.0/duckdb/src/duckdb/src/main/pending_query_result.cpp | 32 duckdb-1.1.0/duckdb/src/duckdb/src/main/prepared_statement.cpp | 12 duckdb-1.1.0/duckdb/src/duckdb/src/main/prepared_statement_data.cpp | 45 duckdb-1.1.0/duckdb/src/duckdb/src/main/profiling_info.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/main/query_profiler.cpp | 639 duckdb-1.1.0/duckdb/src/duckdb/src/main/query_result.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/main/relation.cpp | 20 duckdb-1.1.0/duckdb/src/duckdb/src/main/relation.cpp.orig |only duckdb-1.1.0/duckdb/src/duckdb/src/main/relation/create_table_relation.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/main/relation/create_view_relation.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/main/relation/delim_get_relation.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/main/relation/explain_relation.cpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/main/relation/join_relation.cpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/main/relation/limit_relation.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/main/relation/materialized_relation.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/main/relation/query_relation.cpp | 57 duckdb-1.1.0/duckdb/src/duckdb/src/main/relation/read_csv_relation.cpp | 21 duckdb-1.1.0/duckdb/src/duckdb/src/main/relation/read_json_relation.cpp | 20 duckdb-1.1.0/duckdb/src/duckdb/src/main/relation/setop_relation.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/main/relation/table_function_relation.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/main/relation/view_relation.cpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/main/secret/default_secrets.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/main/secret/secret.cpp | 147 duckdb-1.1.0/duckdb/src/duckdb/src/main/secret/secret_manager.cpp | 120 duckdb-1.1.0/duckdb/src/duckdb/src/main/secret/secret_storage.cpp | 46 duckdb-1.1.0/duckdb/src/duckdb/src/main/settings/settings.cpp | 514 duckdb-1.1.0/duckdb/src/duckdb/src/main/stream_query_result.cpp | 77 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/build_probe_side_optimizer.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/column_lifetime_analyzer.cpp | 34 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/compressed_materialization.cpp | 12 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/compressed_materialization/compress_comparison_join.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/cse_optimizer.cpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/cte_filter_pusher.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/filter_combiner.cpp | 39 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/filter_pullup.cpp | 56 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/filter_pushdown.cpp | 74 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/join_filter_pushdown_optimizer.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/join_order/cardinality_estimator.cpp | 359 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/join_order/join_order_optimizer.cpp | 62 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/join_order/join_relation_set.cpp | 8 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/join_order/plan_enumerator.cpp | 42 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/join_order/query_graph_manager.cpp | 230 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/join_order/relation_manager.cpp | 316 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/join_order/relation_statistics_helper.cpp | 38 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/limit_pushdown.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/optimizer.cpp | 59 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_aggregate.cpp | 34 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_cross_product.cpp | 26 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_get.cpp | 19 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_inner_join.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_mark_join.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_window.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/remove_unused_columns.cpp | 46 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/rule/comparison_simplification.cpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/rule/empty_needle_removal.cpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/rule/equal_or_null_simplification.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/rule/in_clause_simplification_rule.cpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/rule/join_dependent_filter.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/rule/like_optimizations.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/rule/regex_optimizations.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_filter.cpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_get.cpp | 13 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duckdb-1.1.0/duckdb/src/duckdb/src/parser/parsed_data/alter_table_info.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/parser/parsed_data/attach_info.cpp | 17 duckdb-1.1.0/duckdb/src/duckdb/src/parser/parsed_data/create_index_info.cpp | 65 duckdb-1.1.0/duckdb/src/duckdb/src/parser/parsed_data/create_macro_info.cpp | 46 duckdb-1.1.0/duckdb/src/duckdb/src/parser/parsed_data/transaction_info.cpp | 22 duckdb-1.1.0/duckdb/src/duckdb/src/parser/parsed_expression_iterator.cpp | 54 duckdb-1.1.0/duckdb/src/duckdb/src/parser/parser.cpp | 42 duckdb-1.1.0/duckdb/src/duckdb/src/parser/query_node/recursive_cte_node.cpp | 1 duckdb-1.1.0/duckdb/src/duckdb/src/parser/statement/explain_statement.cpp | 41 duckdb-1.1.0/duckdb/src/duckdb/src/parser/statement/relation_statement.cpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/parser/statement/set_statement.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/parser/statement/transaction_statement.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/parser/tableref/column_data_ref.cpp | 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duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/helpers/transform_cte.cpp | 46 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/helpers/transform_orderby.cpp | 59 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/statement/transform_alter_table.cpp | 52 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/statement/transform_copy.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/statement/transform_create_function.cpp | 95 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/statement/transform_create_table.cpp | 12 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/statement/transform_create_table_as.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/statement/transform_create_type.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/statement/transform_create_view.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/statement/transform_explain.cpp | 41 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/statement/transform_insert.cpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/statement/transform_pivot_stmt.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/statement/transform_prepare.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/statement/transform_select.cpp | 47 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/statement/transform_set.cpp | 16 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/statement/transform_show.cpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/statement/transform_show_select.cpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/statement/transform_transaction.cpp | 33 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/statement/transform_update.cpp | 17 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/statement/transform_upsert.cpp | 23 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/statement/transform_vacuum.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/tableref/transform_join.cpp | 26 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/tableref/transform_pivot.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transform/tableref/transform_subquery.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/parser/transformer.cpp | 18 duckdb-1.1.0/duckdb/src/duckdb/src/planner/bind_context.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/planner/binder.cpp | 187 duckdb-1.1.0/duckdb/src/duckdb/src/planner/binder/expression/bind_aggregate_expression.cpp | 29 duckdb-1.1.0/duckdb/src/duckdb/src/planner/binder/expression/bind_between_expression.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/planner/binder/expression/bind_collate_expression.cpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/planner/binder/expression/bind_columnref_expression.cpp | 15 duckdb-1.1.0/duckdb/src/duckdb/src/planner/binder/expression/bind_comparison_expression.cpp | 63 duckdb-1.1.0/duckdb/src/duckdb/src/planner/binder/expression/bind_function_expression.cpp | 8 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duckdb-1.1.0/duckdb/src/duckdb/src/planner/binder/query_node/plan_cte_node.cpp | 24 duckdb-1.1.0/duckdb/src/duckdb/src/planner/binder/query_node/plan_setop.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/planner/binder/query_node/plan_subquery.cpp | 53 duckdb-1.1.0/duckdb/src/duckdb/src/planner/binder/statement/bind_call.cpp | 33 duckdb-1.1.0/duckdb/src/duckdb/src/planner/binder/statement/bind_copy.cpp | 118 duckdb-1.1.0/duckdb/src/duckdb/src/planner/binder/statement/bind_copy_database.cpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/planner/binder/statement/bind_create.cpp | 128 duckdb-1.1.0/duckdb/src/duckdb/src/planner/binder/statement/bind_create_table.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/planner/binder/statement/bind_delete.cpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/planner/binder/statement/bind_drop.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/planner/binder/statement/bind_execute.cpp | 32 duckdb-1.1.0/duckdb/src/duckdb/src/planner/binder/statement/bind_explain.cpp | 4 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duckdb-1.1.0/duckdb/src/duckdb/src/planner/expression/bound_columnref_expression.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/planner/expression/bound_comparison_expression.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/planner/expression/bound_conjunction_expression.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/planner/expression/bound_constant_expression.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/planner/expression/bound_expanded_expression.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/planner/expression/bound_function_expression.cpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/planner/expression/bound_lambda_expression.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/planner/expression/bound_lambdaref_expression.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/planner/expression/bound_operator_expression.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/planner/expression/bound_parameter_expression.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/planner/expression/bound_reference_expression.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/planner/expression/bound_subquery_expression.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/planner/expression/bound_unnest_expression.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/planner/expression/bound_window_expression.cpp | 12 duckdb-1.1.0/duckdb/src/duckdb/src/planner/expression_binder.cpp | 142 duckdb-1.1.0/duckdb/src/duckdb/src/planner/expression_binder/aggregate_binder.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/planner/expression_binder/alter_binder.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/planner/expression_binder/base_select_binder.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/planner/expression_binder/column_alias_binder.cpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/planner/expression_binder/constant_binder.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/planner/expression_binder/group_binder.cpp | 48 duckdb-1.1.0/duckdb/src/duckdb/src/planner/expression_binder/having_binder.cpp | 8 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duckdb-1.1.0/duckdb/src/duckdb/src/planner/filter/constant_filter.cpp | 15 duckdb-1.1.0/duckdb/src/duckdb/src/planner/filter/null_filter.cpp | 22 duckdb-1.1.0/duckdb/src/duckdb/src/planner/filter/struct_filter.cpp | 16 duckdb-1.1.0/duckdb/src/duckdb/src/planner/logical_operator.cpp | 31 duckdb-1.1.0/duckdb/src/duckdb/src/planner/operator/logical_aggregate.cpp | 20 duckdb-1.1.0/duckdb/src/duckdb/src/planner/operator/logical_any_join.cpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/planner/operator/logical_comparison_join.cpp | 18 duckdb-1.1.0/duckdb/src/duckdb/src/planner/operator/logical_copy_to_file.cpp | 72 duckdb-1.1.0/duckdb/src/duckdb/src/planner/operator/logical_cteref.cpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/planner/operator/logical_distinct.cpp | 11 duckdb-1.1.0/duckdb/src/duckdb/src/planner/operator/logical_get.cpp | 78 duckdb-1.1.0/duckdb/src/duckdb/src/planner/operator/logical_materialized_cte.cpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/planner/operator/logical_order.cpp | 11 duckdb-1.1.0/duckdb/src/duckdb/src/planner/operator/logical_top_n.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/planner/operator/logical_vacuum.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/planner/planner.cpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/planner/subquery/flatten_dependent_join.cpp | 37 duckdb-1.1.0/duckdb/src/duckdb/src/planner/table_filter.cpp | 51 duckdb-1.1.0/duckdb/src/duckdb/src/storage/arena_allocator.cpp | 38 duckdb-1.1.0/duckdb/src/duckdb/src/storage/block.cpp | 5 duckdb-1.1.0/duckdb/src/duckdb/src/storage/buffer/block_handle.cpp | 43 duckdb-1.1.0/duckdb/src/duckdb/src/storage/buffer/block_manager.cpp | 11 duckdb-1.1.0/duckdb/src/duckdb/src/storage/buffer/buffer_pool.cpp | 389 duckdb-1.1.0/duckdb/src/duckdb/src/storage/buffer_manager.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/storage/checkpoint/row_group_writer.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/storage/checkpoint/table_data_writer.cpp | 29 duckdb-1.1.0/duckdb/src/duckdb/src/storage/checkpoint/write_overflow_strings_to_disk.cpp | 30 duckdb-1.1.0/duckdb/src/duckdb/src/storage/checkpoint_manager.cpp | 73 duckdb-1.1.0/duckdb/src/duckdb/src/storage/compression/alp/alp.cpp | 17 duckdb-1.1.0/duckdb/src/duckdb/src/storage/compression/alprd.cpp | 14 duckdb-1.1.0/duckdb/src/duckdb/src/storage/compression/bitpacking.cpp | 66 duckdb-1.1.0/duckdb/src/duckdb/src/storage/compression/chimp/chimp.cpp | 14 duckdb-1.1.0/duckdb/src/duckdb/src/storage/compression/dictionary_compression.cpp | 131 duckdb-1.1.0/duckdb/src/duckdb/src/storage/compression/fixed_size_uncompressed.cpp | 28 duckdb-1.1.0/duckdb/src/duckdb/src/storage/compression/fsst.cpp | 125 duckdb-1.1.0/duckdb/src/duckdb/src/storage/compression/numeric_constant.cpp | 9 duckdb-1.1.0/duckdb/src/duckdb/src/storage/compression/patas.cpp | 23 duckdb-1.1.0/duckdb/src/duckdb/src/storage/compression/rle.cpp | 38 duckdb-1.1.0/duckdb/src/duckdb/src/storage/compression/string_uncompressed.cpp | 123 duckdb-1.1.0/duckdb/src/duckdb/src/storage/compression/uncompressed.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/storage/compression/validity_uncompressed.cpp | 15 duckdb-1.1.0/duckdb/src/duckdb/src/storage/data_pointer.cpp | 22 duckdb-1.1.0/duckdb/src/duckdb/src/storage/data_table.cpp | 53 duckdb-1.1.0/duckdb/src/duckdb/src/storage/local_storage.cpp | 30 duckdb-1.1.0/duckdb/src/duckdb/src/storage/metadata/metadata_manager.cpp | 50 duckdb-1.1.0/duckdb/src/duckdb/src/storage/metadata/metadata_reader.cpp | 8 duckdb-1.1.0/duckdb/src/duckdb/src/storage/metadata/metadata_writer.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/storage/partial_block_manager.cpp | 27 duckdb-1.1.0/duckdb/src/duckdb/src/storage/serialization/serialize_create_info.cpp | 19 duckdb-1.1.0/duckdb/src/duckdb/src/storage/serialization/serialize_expression.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/storage/serialization/serialize_extension_install_info.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/storage/serialization/serialize_logical_operator.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/storage/serialization/serialize_nodes.cpp | 24 duckdb-1.1.0/duckdb/src/duckdb/src/storage/serialization/serialize_parse_info.cpp | 22 duckdb-1.1.0/duckdb/src/duckdb/src/storage/serialization/serialize_parsed_expression.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/src/storage/serialization/serialize_query_node.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/storage/serialization/serialize_storage.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/src/storage/serialization/serialize_tableref.cpp | 12 duckdb-1.1.0/duckdb/src/duckdb/src/storage/serialization/serialize_types.cpp | 8 duckdb-1.1.0/duckdb/src/duckdb/src/storage/single_file_block_manager.cpp | 204 duckdb-1.1.0/duckdb/src/duckdb/src/storage/standard_buffer_manager.cpp | 285 duckdb-1.1.0/duckdb/src/duckdb/src/storage/statistics/column_statistics.cpp | 7 duckdb-1.1.0/duckdb/src/duckdb/src/storage/statistics/distinct_statistics.cpp | 62 duckdb-1.1.0/duckdb/src/duckdb/src/storage/statistics/numeric_stats.cpp | 19 duckdb-1.1.0/duckdb/src/duckdb/src/storage/statistics/string_stats.cpp | 22 duckdb-1.1.0/duckdb/src/duckdb/src/storage/statistics/struct_stats.cpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/storage/storage_info.cpp | 43 duckdb-1.1.0/duckdb/src/duckdb/src/storage/storage_manager.cpp | 221 duckdb-1.1.0/duckdb/src/duckdb/src/storage/table/array_column_data.cpp | 54 duckdb-1.1.0/duckdb/src/duckdb/src/storage/table/chunk_info.cpp | 38 duckdb-1.1.0/duckdb/src/duckdb/src/storage/table/column_checkpoint_state.cpp | 16 duckdb-1.1.0/duckdb/src/duckdb/src/storage/table/column_data.cpp | 283 duckdb-1.1.0/duckdb/src/duckdb/src/storage/table/column_data_checkpointer.cpp | 14 duckdb-1.1.0/duckdb/src/duckdb/src/storage/table/column_segment.cpp | 99 duckdb-1.1.0/duckdb/src/duckdb/src/storage/table/list_column_data.cpp | 49 duckdb-1.1.0/duckdb/src/duckdb/src/storage/table/row_group.cpp | 350 duckdb-1.1.0/duckdb/src/duckdb/src/storage/table/row_group_collection.cpp | 242 duckdb-1.1.0/duckdb/src/duckdb/src/storage/table/row_version_manager.cpp | 28 duckdb-1.1.0/duckdb/src/duckdb/src/storage/table/scan_state.cpp | 119 duckdb-1.1.0/duckdb/src/duckdb/src/storage/table/standard_column_data.cpp | 54 duckdb-1.1.0/duckdb/src/duckdb/src/storage/table/struct_column_data.cpp | 83 duckdb-1.1.0/duckdb/src/duckdb/src/storage/table/table_statistics.cpp | 3 duckdb-1.1.0/duckdb/src/duckdb/src/storage/table/update_segment.cpp | 17 duckdb-1.1.0/duckdb/src/duckdb/src/storage/table/validity_column_data.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/src/storage/table_index_list.cpp | 15 duckdb-1.1.0/duckdb/src/duckdb/src/storage/temporary_file_manager.cpp | 20 duckdb-1.1.0/duckdb/src/duckdb/src/storage/temporary_memory_manager.cpp | 266 duckdb-1.1.0/duckdb/src/duckdb/src/storage/wal_replay.cpp | 96 duckdb-1.1.0/duckdb/src/duckdb/src/storage/write_ahead_log.cpp | 103 duckdb-1.1.0/duckdb/src/duckdb/src/transaction/cleanup_state.cpp | 10 duckdb-1.1.0/duckdb/src/duckdb/src/transaction/commit_state.cpp | 177 duckdb-1.1.0/duckdb/src/duckdb/src/transaction/duck_transaction.cpp | 106 duckdb-1.1.0/duckdb/src/duckdb/src/transaction/duck_transaction_manager.cpp | 75 duckdb-1.1.0/duckdb/src/duckdb/src/transaction/meta_transaction.cpp | 21 duckdb-1.1.0/duckdb/src/duckdb/src/transaction/transaction_context.cpp | 38 duckdb-1.1.0/duckdb/src/duckdb/src/transaction/undo_buffer.cpp | 34 duckdb-1.1.0/duckdb/src/duckdb/src/transaction/wal_write_state.cpp |only duckdb-1.1.0/duckdb/src/duckdb/src/verification/prepared_statement_verifier.cpp | 1 duckdb-1.1.0/duckdb/src/duckdb/third_party/brotli |only duckdb-1.1.0/duckdb/src/duckdb/third_party/fast_float/fast_float/fast_float.h | 24 duckdb-1.1.0/duckdb/src/duckdb/third_party/fmt/include/fmt/format.h | 64 duckdb-1.1.0/duckdb/src/duckdb/third_party/fsst/fsst.h | 4 duckdb-1.1.0/duckdb/src/duckdb/third_party/fsst/libfsst.hpp | 4 duckdb-1.1.0/duckdb/src/duckdb/third_party/httplib/httplib.hpp |12575 +- duckdb-1.1.0/duckdb/src/duckdb/third_party/hyperloglog/hyperloglog.cpp | 43 duckdb-1.1.0/duckdb/src/duckdb/third_party/hyperloglog/hyperloglog.hpp | 10 duckdb-1.1.0/duckdb/src/duckdb/third_party/libpg_query/include/nodes/nodes.hpp | 1 duckdb-1.1.0/duckdb/src/duckdb/third_party/libpg_query/include/nodes/parsenodes.hpp | 31 duckdb-1.1.0/duckdb/src/duckdb/third_party/libpg_query/include/parser/gram.hpp | 1595 duckdb-1.1.0/duckdb/src/duckdb/third_party/libpg_query/include/parser/kwlist.hpp | 1 duckdb-1.1.0/duckdb/src/duckdb/third_party/libpg_query/postgres_parser.cpp | 3 duckdb-1.1.0/duckdb/src/duckdb/third_party/libpg_query/src_backend_parser_gram.cpp |42279 ++++------ duckdb-1.1.0/duckdb/src/duckdb/third_party/libpg_query/src_backend_parser_scan.cpp | 843 duckdb-1.1.0/duckdb/src/duckdb/third_party/mbedtls/include/mbedtls/mbedtls_config.h | 1 duckdb-1.1.0/duckdb/src/duckdb/third_party/mbedtls/include/mbedtls_wrapper.hpp | 48 duckdb-1.1.0/duckdb/src/duckdb/third_party/mbedtls/library/md.cpp | 12 duckdb-1.1.0/duckdb/src/duckdb/third_party/mbedtls/library/sha1.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/third_party/mbedtls/library/sha256.cpp | 3 duckdb-1.1.0/duckdb/src/duckdb/third_party/mbedtls/mbedtls_wrapper.cpp | 146 duckdb-1.1.0/duckdb/src/duckdb/third_party/pcg/pcg_extras.hpp | 2 duckdb-1.1.0/duckdb/src/duckdb/third_party/re2/re2/prog.cc | 4 duckdb-1.1.0/duckdb/src/duckdb/third_party/snappy/snappy-internal.h | 398 duckdb-1.1.0/duckdb/src/duckdb/third_party/snappy/snappy-sinksource.cc | 120 duckdb-1.1.0/duckdb/src/duckdb/third_party/snappy/snappy-sinksource.h | 158 duckdb-1.1.0/duckdb/src/duckdb/third_party/snappy/snappy-stubs-internal.h | 526 duckdb-1.1.0/duckdb/src/duckdb/third_party/snappy/snappy-stubs-public.h | 35 duckdb-1.1.0/duckdb/src/duckdb/third_party/snappy/snappy.cc | 2626 duckdb-1.1.0/duckdb/src/duckdb/third_party/snappy/snappy.h | 223 duckdb-1.1.0/duckdb/src/duckdb/third_party/snappy/snappy_version.hpp |only duckdb-1.1.0/duckdb/src/duckdb/third_party/utf8proc/include/utf8proc.hpp | 170 duckdb-1.1.0/duckdb/src/duckdb/third_party/utf8proc/include/utf8proc_wrapper.hpp | 53 duckdb-1.1.0/duckdb/src/duckdb/third_party/utf8proc/utf8proc.cpp | 1299 duckdb-1.1.0/duckdb/src/duckdb/third_party/utf8proc/utf8proc_data.cpp |27664 +++--- duckdb-1.1.0/duckdb/src/duckdb/third_party/utf8proc/utf8proc_wrapper.cpp | 218 duckdb-1.1.0/duckdb/src/duckdb/ub_src_catalog_default.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/ub_src_common.cpp | 8 duckdb-1.1.0/duckdb/src/duckdb/ub_src_common_arrow.cpp | 10 duckdb-1.1.0/duckdb/src/duckdb/ub_src_common_enums.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/ub_src_common_tree_renderer.cpp |only duckdb-1.1.0/duckdb/src/duckdb/ub_src_common_types.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/ub_src_core_functions_aggregate_holistic.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/ub_src_core_functions_aggregate_nested.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/ub_src_core_functions_scalar_generic.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/ub_src_core_functions_scalar_list.cpp | 6 duckdb-1.1.0/duckdb/src/duckdb/ub_src_core_functions_scalar_map.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/ub_src_core_functions_scalar_string.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/ub_src_execution_index_art.cpp | 8 duckdb-1.1.0/duckdb/src/duckdb/ub_src_execution_operator_csv_scanner_scanner.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/ub_src_execution_operator_helper.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/ub_src_function.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/ub_src_function_cast.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/ub_src_function_scalar_generic.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/ub_src_function_scalar_list.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/ub_src_function_scalar_string.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/ub_src_function_table.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/ub_src_function_table_arrow.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/ub_src_function_table_system.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/ub_src_main.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/ub_src_main_buffered_data.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/ub_src_main_capi.cpp | 10 duckdb-1.1.0/duckdb/src/duckdb/ub_src_main_chunk_scan_state.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/ub_src_main_relation.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/ub_src_main_secret.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/ub_src_optimizer.cpp | 8 duckdb-1.1.0/duckdb/src/duckdb/ub_src_optimizer_compressed_materialization.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/ub_src_optimizer_pushdown.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/ub_src_optimizer_rule.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/ub_src_parallel.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/ub_src_parser_tableref.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/ub_src_planner.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/ub_src_planner_binder_expression.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/ub_src_planner_binder_tableref.cpp | 4 duckdb-1.1.0/duckdb/src/duckdb/ub_src_storage_statistics.cpp | 2 duckdb-1.1.0/duckdb/src/duckdb/ub_src_transaction.cpp | 2 duckdb-1.1.0/duckdb/src/include/sources.mk | 2 duckdb-1.1.0/duckdb/src/include/typesr.hpp | 1 duckdb-1.1.0/duckdb/src/install.libs.R | 11 duckdb-1.1.0/duckdb/src/relational.cpp | 14 duckdb-1.1.0/duckdb/src/rfuns.cpp | 60 duckdb-1.1.0/duckdb/src/scan.cpp | 1 duckdb-1.1.0/duckdb/src/statement.cpp | 18 duckdb-1.1.0/duckdb/src/utils.cpp | 5 duckdb-1.1.0/duckdb/tests/testthat/_snaps/explain.md | 37 duckdb-1.1.0/duckdb/tests/testthat/_snaps/types.md | 2 duckdb-1.1.0/duckdb/tests/testthat/test-backend-dbplyr__duckdb_connection.R | 20 duckdb-1.1.0/duckdb/tests/testthat/test-tbl__duckdb_connection.R | 20 duckdb-1.1.0/duckdb/tests/testthat/test-types.R | 2 1328 files changed, 90148 insertions(+), 63479 deletions(-)
Title: Cancer Registry Data Analysis and Visualisation
Description: Tools for basic and advance cancer statistics and graphics.
Groups individual data, merges registry data and population data, calculates age-specific rate, age-standardized rate, cumulative risk, estimated annual percentage rate with standards error. Creates graphics across variable and
time, such as age-specific trends, bar chart and period-cohort trends.
Author: Mathieu Laversanne [aut, cre],
Jerome Vignat [aut],
Cancer Surveillance Unit [cph]
Maintainer: Mathieu Laversanne <laversannem@iarc.who.int>
Diff between Rcan versions 1.3.90 dated 2024-09-18 and 1.3.91 dated 2024-09-24
DESCRIPTION | 6 +++--- MD5 | 6 +++--- build/partial.rdb |binary man/csu_eapc.Rd | 5 +++-- 4 files changed, 9 insertions(+), 8 deletions(-)
Title: Superefficient Estimation of Future Conditional Hazards Based on
Marker Information
Description: Provides a nonparametric smoothed kernel density estimator for the future conditional hazard when time-dependent covariates are present. It also provides pointwise and uniform confidence bands and a bandwidth selection.
Author: Dimitrios Bagkavos [aut, cre],
Alex Isakson [ctb],
Enno Mammen [ctb],
Jens Nielsen [ctb],
Cecile Proust-Lima [ctb]
Maintainer: Dimitrios Bagkavos <dimitrios.bagkavos@gmail.com>
Diff between HQM versions 0.1.0 dated 2022-09-12 and 0.1.1 dated 2024-09-24
DESCRIPTION | 26 +++++++++++++------------- MD5 | 32 +++++++++++++++++++++++--------- NAMESPACE | 2 +- R/Epan.R |only R/Kernels.R | 13 +++++++++++-- R/dij.R |only R/get_alpha.R | 10 ++++------ R/get_h_x.R | 21 ++++++++------------- R/get_h_xll.R |only R/h_xt.R | 19 +++++-------------- R/h_xtll.R |only R/llK_b.R |only R/llweights.R |only R/local_linear.R |only build |only man/Epan.Rd |only man/Kernels.Rd | 20 +++++++++++--------- man/dij.Rd |only man/get_h_x.Rd | 44 ++++++++++++++++++++++++++++++-------------- man/get_h_xll.Rd |only man/h_xt.Rd | 15 +++++++++------ man/h_xtll.Rd |only man/llK_b.Rd |only man/llweights.Rd |only 24 files changed, 115 insertions(+), 87 deletions(-)
Title: Fast Spatial and Spatio-Temporal Regression using Moran
Eigenvectors
Description: Functions for estimating spatio-temporally varying coefficient models, mixed models, and other spatial regression models for Gaussian and non-Gaussian data. Moran eigenvectors are used to approximate spatial and spatio-temporal processes in residuals and regression coefficients.
Author: Daisuke Murakami [aut, cre]
Maintainer: Daisuke Murakami <dmuraka@ism.ac.jp>
Diff between spmoran versions 0.2.3 dated 2024-01-23 and 0.3.0 dated 2024-09-24
spmoran-0.2.3/spmoran/R/predict0_vc.R |only spmoran-0.2.3/spmoran/man/predict0_vc.Rd |only spmoran-0.3.0/spmoran/DESCRIPTION | 20 spmoran-0.3.0/spmoran/MD5 | 65 spmoran-0.3.0/spmoran/NAMESPACE | 106 spmoran-0.3.0/spmoran/R/addlearn_local.R | 3144 ++++------ spmoran-0.3.0/spmoran/R/besf.R | 178 spmoran-0.3.0/spmoran/R/besf_vc.R | 49 spmoran-0.3.0/spmoran/R/coef_marginal.R | 4 spmoran-0.3.0/spmoran/R/coef_marginal_vc.R | 136 spmoran-0.3.0/spmoran/R/esf.R | 417 - spmoran-0.3.0/spmoran/R/meigen.R | 303 spmoran-0.3.0/spmoran/R/meigen0.R | 144 spmoran-0.3.0/spmoran/R/meigen_f.R | 189 spmoran-0.3.0/spmoran/R/nongauss_y.R | 6 spmoran-0.3.0/spmoran/R/plot_s.R | 265 spmoran-0.3.0/spmoran/R/predict0.R | 579 + spmoran-0.3.0/spmoran/R/resf.R | 30 spmoran-0.3.0/spmoran/R/resf_qr.R | 26 spmoran-0.3.0/spmoran/R/resf_vc.R | 2757 +++++--- spmoran-0.3.0/spmoran/build/vignette.rds |binary spmoran-0.3.0/spmoran/inst/doc/sample_code_spatiotemporal.pdf |only spmoran-0.3.0/spmoran/inst/doc/sample_code_spatiotemporal.pdf.asis |only spmoran-0.3.0/spmoran/inst/doc/vignette_spmoran_nongaussian.pdf |binary spmoran-0.3.0/spmoran/man/addlearn_local.Rd | 12 spmoran-0.3.0/spmoran/man/besf.Rd | 2 spmoran-0.3.0/spmoran/man/besf_vc.Rd | 251 spmoran-0.3.0/spmoran/man/meigen.Rd | 33 spmoran-0.3.0/spmoran/man/meigen0.Rd | 60 spmoran-0.3.0/spmoran/man/meigen_f.Rd | 25 spmoran-0.3.0/spmoran/man/plot_s.Rd | 21 spmoran-0.3.0/spmoran/man/predict0.Rd | 152 spmoran-0.3.0/spmoran/man/resf.Rd | 314 spmoran-0.3.0/spmoran/man/resf_qr.Rd | 124 spmoran-0.3.0/spmoran/man/resf_vc.Rd | 167 spmoran-0.3.0/spmoran/vignettes/sample_code_spatiotemporal.pdf.asis |only 36 files changed, 5523 insertions(+), 4056 deletions(-)
Title: Fast and Robust Multi-Scale Graph Clustering
Description: A graph community detection algorithm that aims to be performant
on large graphs and robust, returning consistent results across runs.
SpeakEasy 2 (SE2), the underlying algorithm, is described in Chris Gaiteri,
David R. Connell & Faraz A. Sultan et al. (2023)
<doi:10.1186/s13059-023-03062-0>. The core algorithm is written in 'C',
providing speed and keeping the memory requirements low. This implementation
can take advantage of multiple computing cores without increasing memory
usage. SE2 can detect community structure across scales, making it a good
choice for biological data, which often has hierarchical structure. Graphs
can be passed to the algorithm as adjacency matrices using base 'R'
matrices, the 'Matrix' library, 'igraph' graphs, or any data that can be
coerced into a matrix.
Author: David Connell [aut, cre, cph] ,
Chris Gaiteri [cph] ,
Gabor Csardi [cph, ctb] ,
Tamas Nepusz [cph, ctb] ,
Szabolcs Horvat [cph, ctb] ,
Vincent Traag [cph, ctb] ,
Fabio Zanini [cph, ctb] ,
Daniel Noom [cph, ctb] ,
The igraph development team [cph] ,
F [...truncated...]
Maintainer: David Connell <david32@dcon.addy.io>
Diff between speakeasyR versions 0.1.3 dated 2024-08-20 and 0.1.4 dated 2024-09-24
speakeasyR-0.1.3/speakeasyR/src/se2/src/speakeasy2/se2_interface.c |only speakeasyR-0.1.4/speakeasyR/DESCRIPTION | 14 speakeasyR-0.1.4/speakeasyR/MD5 | 89 +- speakeasyR-0.1.4/speakeasyR/NAMESPACE | 1 speakeasyR-0.1.4/speakeasyR/NEWS.md | 14 speakeasyR-0.1.4/speakeasyR/R/cluster_genes.R |only speakeasyR-0.1.4/speakeasyR/configure | 37 - speakeasyR-0.1.4/speakeasyR/configure.ac | 21 speakeasyR-0.1.4/speakeasyR/configure.win | 19 speakeasyR-0.1.4/speakeasyR/inst/doc/speakeasyR.html | 101 ++- speakeasyR-0.1.4/speakeasyR/man/cluster_genes.Rd |only speakeasyR-0.1.4/speakeasyR/src/arpack/dgetv0.f | 2 speakeasyR-0.1.4/speakeasyR/src/arpack/dnaitr.f | 2 speakeasyR-0.1.4/speakeasyR/src/arpack/dnaupd.f | 4 speakeasyR-0.1.4/speakeasyR/src/arpack/dneupd.f | 2 speakeasyR-0.1.4/speakeasyR/src/arpack/dngets.f | 4 speakeasyR-0.1.4/speakeasyR/src/arpack/dsaitr.f | 2 speakeasyR-0.1.4/speakeasyR/src/arpack/dsaupd.f | 4 speakeasyR-0.1.4/speakeasyR/src/arpack/dsesrt.f | 4 speakeasyR-0.1.4/speakeasyR/src/arpack/dseupd.f | 2 speakeasyR-0.1.4/speakeasyR/src/arpack/dsgets.f | 4 speakeasyR-0.1.4/speakeasyR/src/arpack/dsortc.f | 4 speakeasyR-0.1.4/speakeasyR/src/arpack/dsortr.f | 4 speakeasyR-0.1.4/speakeasyR/src/se2/CMakeLists.txt | 31 - speakeasyR-0.1.4/speakeasyR/src/se2/include/speak_easy_2.h | 38 - speakeasyR-0.1.4/speakeasyR/src/se2/src/speakeasy2/CMakeLists.txt | 13 speakeasyR-0.1.4/speakeasyR/src/se2/src/speakeasy2/se2_core.c | 277 ++++----- speakeasyR-0.1.4/speakeasyR/src/se2/src/speakeasy2/se2_error_handling.h | 105 +-- speakeasyR-0.1.4/speakeasyR/src/se2/src/speakeasy2/se2_interface.h | 15 speakeasyR-0.1.4/speakeasyR/src/se2/src/speakeasy2/se2_knn_graph.c | 78 +- speakeasyR-0.1.4/speakeasyR/src/se2/src/speakeasy2/se2_label.c | 220 +++---- speakeasyR-0.1.4/speakeasyR/src/se2/src/speakeasy2/se2_label.h | 37 - speakeasyR-0.1.4/speakeasyR/src/se2/src/speakeasy2/se2_modes.c | 73 +- speakeasyR-0.1.4/speakeasyR/src/se2/src/speakeasy2/se2_modes.h | 24 speakeasyR-0.1.4/speakeasyR/src/se2/src/speakeasy2/se2_neighborlist.c | 91 +- speakeasyR-0.1.4/speakeasyR/src/se2/src/speakeasy2/se2_neighborlist.h | 13 speakeasyR-0.1.4/speakeasyR/src/se2/src/speakeasy2/se2_order_nodes.c | 75 +- speakeasyR-0.1.4/speakeasyR/src/se2/src/speakeasy2/se2_partitions.c | 307 ++++------ speakeasyR-0.1.4/speakeasyR/src/se2/src/speakeasy2/se2_partitions.h | 78 +- speakeasyR-0.1.4/speakeasyR/src/se2/src/speakeasy2/se2_random.c | 14 speakeasyR-0.1.4/speakeasyR/src/se2/src/speakeasy2/se2_random.h | 6 speakeasyR-0.1.4/speakeasyR/src/se2/src/speakeasy2/se2_reweigh_graph.c | 138 ++-- speakeasyR-0.1.4/speakeasyR/src/se2/src/speakeasy2/se2_reweigh_graph.h | 2 speakeasyR-0.1.4/speakeasyR/src/se2/src/speakeasy2/se2_seeding.c | 24 speakeasyR-0.1.4/speakeasyR/src/se2/src/speakeasy2/se2_seeding.h | 7 speakeasyR-0.1.4/speakeasyR/src/se2/vendor/CMakeLists.txt | 87 +- speakeasyR-0.1.4/speakeasyR/src/speakeasyR.c | 18 47 files changed, 1063 insertions(+), 1042 deletions(-)
Title: Pattern Causality Algorithm
Description: The model proposes a robust methodology for detecting and reconstructing the hidden structure of dynamic complex systems through short-term forecasts and information embedded in reconstructed state spaces. The approach not only identifies critical components and causal interactions within these systems but also provides a practical tool for optimizing system performance and stability.
Author: Stavros Stavroglou [aut] ,
Athanasios Pantelous [aut] ,
Hui Wang [aut, cre]
Maintainer: Hui Wang <huiw1128@gmail.com>
Diff between patterncausality versions 0.1.2 dated 2024-08-22 and 0.1.3 dated 2024-09-24
patterncausality-0.1.2/patterncausality/data/climate.rda |only patterncausality-0.1.2/patterncausality/data/stock.rda |only patterncausality-0.1.2/patterncausality/man/climate.Rd |only patterncausality-0.1.2/patterncausality/man/stock.Rd |only patterncausality-0.1.3/patterncausality/DESCRIPTION | 8 patterncausality-0.1.3/patterncausality/LICENSE | 2 patterncausality-0.1.3/patterncausality/MD5 | 82 ++++++---- patterncausality-0.1.3/patterncausality/NAMESPACE | 17 ++ patterncausality-0.1.3/patterncausality/R/PC.Mk.II.Full.Details.R | 6 patterncausality-0.1.3/patterncausality/R/PC.Mk.II.Lightweight.R | 6 patterncausality-0.1.3/patterncausality/R/data.R | 12 - patterncausality-0.1.3/patterncausality/R/optimalParametersSearch.R | 10 - patterncausality-0.1.3/patterncausality/R/pastNNsInfo.R | 2 patterncausality-0.1.3/patterncausality/R/pcAccuracy.R | 4 patterncausality-0.1.3/patterncausality/R/pcCV.R |only patterncausality-0.1.3/patterncausality/R/pcEffect.R |only patterncausality-0.1.3/patterncausality/R/pcMatrix.R |only patterncausality-0.1.3/patterncausality/R/plotEffect.R |only patterncausality-0.1.3/patterncausality/R/plotMatrix.R |only patterncausality-0.1.3/patterncausality/R/plotState.R |only patterncausality-0.1.3/patterncausality/R/predictionY.R | 4 patterncausality-0.1.3/patterncausality/R/projectedNNsInfo.R | 4 patterncausality-0.1.3/patterncausality/R/signatureSpace.R | 4 patterncausality-0.1.3/patterncausality/README.md | 17 +- patterncausality-0.1.3/patterncausality/build/vignette.rds |binary patterncausality-0.1.3/patterncausality/data/DJS.rda |only patterncausality-0.1.3/patterncausality/data/climate_indices.rda |only patterncausality-0.1.3/patterncausality/inst/doc/matrix.R |only patterncausality-0.1.3/patterncausality/inst/doc/matrix.Rmd |only patterncausality-0.1.3/patterncausality/inst/doc/matrix.html |only patterncausality-0.1.3/patterncausality/inst/doc/patterncausality.R | 26 +-- patterncausality-0.1.3/patterncausality/inst/doc/patterncausality.Rmd | 26 +-- patterncausality-0.1.3/patterncausality/inst/doc/patterncausality.html | 69 +++++--- patterncausality-0.1.3/patterncausality/inst/doc/series.R |only patterncausality-0.1.3/patterncausality/inst/doc/series.Rmd |only patterncausality-0.1.3/patterncausality/inst/doc/series.html |only patterncausality-0.1.3/patterncausality/man/DJS.Rd |only patterncausality-0.1.3/patterncausality/man/climate_indices.Rd |only patterncausality-0.1.3/patterncausality/man/optimalParametersSearch.Rd | 4 patterncausality-0.1.3/patterncausality/man/pastNNsInfo.Rd | 2 patterncausality-0.1.3/patterncausality/man/pcAccuracy.Rd | 4 patterncausality-0.1.3/patterncausality/man/pcCrossValidation.Rd |only patterncausality-0.1.3/patterncausality/man/pcEffect.Rd |only patterncausality-0.1.3/patterncausality/man/pcFullDetails.Rd | 6 patterncausality-0.1.3/patterncausality/man/pcLightweight.Rd | 6 patterncausality-0.1.3/patterncausality/man/pcMatrix.Rd |only patterncausality-0.1.3/patterncausality/man/plotCV.Rd |only patterncausality-0.1.3/patterncausality/man/plotEffect.Rd |only patterncausality-0.1.3/patterncausality/man/plotMatrix.Rd |only patterncausality-0.1.3/patterncausality/man/plotState.Rd |only patterncausality-0.1.3/patterncausality/man/predictionY.Rd | 4 patterncausality-0.1.3/patterncausality/man/projectedNNsInfo.Rd | 4 patterncausality-0.1.3/patterncausality/man/signatureSpace.Rd | 4 patterncausality-0.1.3/patterncausality/vignettes/djsmatrix.rds |only patterncausality-0.1.3/patterncausality/vignettes/matrix.Rmd |only patterncausality-0.1.3/patterncausality/vignettes/patterncausality.Rmd | 26 +-- patterncausality-0.1.3/patterncausality/vignettes/series.Rmd |only 57 files changed, 210 insertions(+), 149 deletions(-)
More information about patterncausality at CRAN
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Title: Analysis of Data from a Crossover Design with GEE
Description: Analyze data from a crossover design using generalized estimation equations (GEE), including carryover effects and various correlation structures based on the Kronecker product. It contains functions for semiparametric estimates of carry-over effects in repeated measures and allows estimation of complex carry-over effects. Related work includes: a) Cruz N.A., Melo O.O., Martinez C.A. (2023). "CrossCarry: An R package for the analysis of data from a crossover design with GEE". <doi:10.48550/arXiv.2304.02440>. b) Cruz N.A., Melo O.O., Martinez C.A. (2023). "A correlation structure for the analysis of Gaussian and non-Gaussian responses in crossover experimental designs with repeated measures". <doi:10.1007/s00362-022-01391-z> and c) Cruz N.A., Melo O.O., Martinez C.A. (2023). "Semiparametric generalized estimating equations for repeated measurements in cross-over designs". <doi:10.1177/09622802231158736>.
Author: Nelson Alirio Cruz Gutierrez [aut, cre, cph],
Oscar Orlando Melo [aut],
Carlos Alberto Martinez [aut]
Maintainer: Nelson Alirio Cruz Gutierrez <nelson-alirio.cruz@uib.es>
Diff between CrossCarry versions 0.3.0 dated 2024-08-29 and 0.4.0 dated 2024-09-24
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- R/CrossGEE.R | 3 +++ R/CrossGEEKron.R | 7 ++++++- R/CrossGEESP.R | 5 +++++ man/CrossGEE.Rd | 3 +++ man/CrossGEEKron.Rd | 6 ++++++ man/CrossGEESP.Rd | 5 +++++ 8 files changed, 40 insertions(+), 13 deletions(-)
Title: Flexible Bayesian Optimization
Description: A modern and flexible approach to Bayesian Optimization / Model
Based Optimization building on the 'bbotk' package. 'mlr3mbo' is a toolbox
providing both ready-to-use optimization algorithms as well as their fundamental
building blocks allowing for straightforward implementation of custom
algorithms. Single- and multi-objective optimization is supported as well as
mixed continuous, categorical and conditional search spaces. Moreover, using
'mlr3mbo' for hyperparameter optimization of machine learning models within the
'mlr3' ecosystem is straightforward via 'mlr3tuning'. Examples of ready-to-use
optimization algorithms include Efficient Global Optimization by Jones et al.
(1998) <doi:10.1023/A:1008306431147>, ParEGO by Knowles (2006)
<doi:10.1109/TEVC.2005.851274> and SMS-EGO by Ponweiser et al. (2008)
<doi:10.1007/978-3-540-87700-4_78>.
Author: Lennart Schneider [cre, aut] ,
Jakob Richter [aut] ,
Marc Becker [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
Florian Pfisterer [aut] ,
Martin Binder [aut],
Sebastian Fischer [aut] ,
Michael H. Buselli [cph],
Wessel Dankers [cph],
Carlos Fonseca [...truncated...]
Maintainer: Lennart Schneider <lennart.sch@web.de>
Diff between mlr3mbo versions 0.2.4 dated 2024-07-06 and 0.2.5 dated 2024-09-24
mlr3mbo-0.2.4/mlr3mbo/build/vignette.rds |only mlr3mbo-0.2.4/mlr3mbo/inst |only mlr3mbo-0.2.4/mlr3mbo/vignettes |only mlr3mbo-0.2.5/mlr3mbo/DESCRIPTION | 21 - mlr3mbo-0.2.5/mlr3mbo/MD5 | 106 ++++----- mlr3mbo-0.2.5/mlr3mbo/NAMESPACE | 2 mlr3mbo-0.2.5/mlr3mbo/NEWS.md | 7 mlr3mbo-0.2.5/mlr3mbo/R/AcqFunctionAEI.R | 2 mlr3mbo-0.2.5/mlr3mbo/R/AcqFunctionCB.R | 4 mlr3mbo-0.2.5/mlr3mbo/R/AcqFunctionEHVI.R | 2 mlr3mbo-0.2.5/mlr3mbo/R/AcqFunctionEHVIGH.R | 2 mlr3mbo-0.2.5/mlr3mbo/R/AcqFunctionEI.R | 25 +- mlr3mbo-0.2.5/mlr3mbo/R/AcqFunctionEIPS.R | 2 mlr3mbo-0.2.5/mlr3mbo/R/AcqFunctionMulti.R |only mlr3mbo-0.2.5/mlr3mbo/R/AcqFunctionPI.R | 2 mlr3mbo-0.2.5/mlr3mbo/R/AcqFunctionSmsEgo.R | 2 mlr3mbo-0.2.5/mlr3mbo/R/AcqOptimizer.R | 65 +++-- mlr3mbo-0.2.5/mlr3mbo/R/ResultAssigner.R | 2 mlr3mbo-0.2.5/mlr3mbo/R/Surrogate.R | 2 mlr3mbo-0.2.5/mlr3mbo/R/SurrogateLearnerCollection.R | 12 - mlr3mbo-0.2.5/mlr3mbo/R/helper.R | 61 +++-- mlr3mbo-0.2.5/mlr3mbo/R/mbo_defaults.R | 9 mlr3mbo-0.2.5/mlr3mbo/R/mlr_acqfunctions.R | 25 +- mlr3mbo-0.2.5/mlr3mbo/R/sugar.R | 33 ++ mlr3mbo-0.2.5/mlr3mbo/README.md | 116 +++++----- mlr3mbo-0.2.5/mlr3mbo/build/partial.rdb |binary mlr3mbo-0.2.5/mlr3mbo/man/AcqFunction.Rd | 1 mlr3mbo-0.2.5/mlr3mbo/man/AcqOptimizer.Rd | 30 +- mlr3mbo-0.2.5/mlr3mbo/man/ResultAssigner.Rd | 3 mlr3mbo-0.2.5/mlr3mbo/man/Surrogate.Rd | 3 mlr3mbo-0.2.5/mlr3mbo/man/acqfs.Rd |only mlr3mbo-0.2.5/mlr3mbo/man/acqo.Rd | 5 mlr3mbo-0.2.5/mlr3mbo/man/mlr_acqfunctions.Rd | 5 mlr3mbo-0.2.5/mlr3mbo/man/mlr_acqfunctions_aei.Rd | 3 mlr3mbo-0.2.5/mlr3mbo/man/mlr_acqfunctions_cb.Rd | 1 mlr3mbo-0.2.5/mlr3mbo/man/mlr_acqfunctions_ehvi.Rd | 3 mlr3mbo-0.2.5/mlr3mbo/man/mlr_acqfunctions_ehvigh.Rd | 3 mlr3mbo-0.2.5/mlr3mbo/man/mlr_acqfunctions_ei.Rd | 18 + mlr3mbo-0.2.5/mlr3mbo/man/mlr_acqfunctions_eips.Rd | 3 mlr3mbo-0.2.5/mlr3mbo/man/mlr_acqfunctions_mean.Rd | 1 mlr3mbo-0.2.5/mlr3mbo/man/mlr_acqfunctions_multi.Rd |only mlr3mbo-0.2.5/mlr3mbo/man/mlr_acqfunctions_pi.Rd | 3 mlr3mbo-0.2.5/mlr3mbo/man/mlr_acqfunctions_sd.Rd | 1 mlr3mbo-0.2.5/mlr3mbo/man/mlr_acqfunctions_smsego.Rd | 3 mlr3mbo-0.2.5/mlr3mbo/tests/testthat/helper.R | 18 + mlr3mbo-0.2.5/mlr3mbo/tests/testthat/test_AcqFunction.R | 2 mlr3mbo-0.2.5/mlr3mbo/tests/testthat/test_AcqFunctionCB.R | 3 mlr3mbo-0.2.5/mlr3mbo/tests/testthat/test_AcqFunctionEHVIGH.R | 3 mlr3mbo-0.2.5/mlr3mbo/tests/testthat/test_AcqFunctionEI.R | 3 mlr3mbo-0.2.5/mlr3mbo/tests/testthat/test_AcqFunctionMulti.R |only mlr3mbo-0.2.5/mlr3mbo/tests/testthat/test_AcqFunctionSmsEgo.R | 3 mlr3mbo-0.2.5/mlr3mbo/tests/testthat/test_AcqOptimizer.R | 30 ++ mlr3mbo-0.2.5/mlr3mbo/tests/testthat/test_bayesopt_ego.R | 2 mlr3mbo-0.2.5/mlr3mbo/tests/testthat/test_mbo_defaults.R | 37 +-- mlr3mbo-0.2.5/mlr3mbo/tests/testthat/test_mlr_acqfunctions.R | 10 mlr3mbo-0.2.5/mlr3mbo/tests/testthat/test_sugar.R | 6 56 files changed, 454 insertions(+), 251 deletions(-)
Title: Fit Regularization Path for Generalized Additive Models
Description: Using overlap grouped-lasso penalties, 'gamsel' selects whether a term in a 'gam' is nonzero, linear, or a non-linear spline (up to a specified max df per variable). It fits the entire regularization path on a grid of values for the overall penalty lambda, both for gaussian and binomial families. See <doi:10.48550/arXiv.1506.03850> for more details.
Author: Alexandra Chouldechova [aut],
Trevor Hastie [aut, cre],
Balasubramanian Narasimhan [ctb],
Vitalie Spinu [ctb],
Matt Wand [ctb]
Maintainer: Trevor Hastie <hastie@stanford.edu>
Diff between gamsel versions 1.8-4 dated 2024-07-18 and 1.8-5 dated 2024-09-24
DESCRIPTION | 10 ++-- MD5 | 8 +-- R/gamsel-package.R | 3 - inst/doc/gamsel.html | 4 - src/gamsel.c | 110 +++++++++++++++++++++++++-------------------------- 5 files changed, 67 insertions(+), 68 deletions(-)
Title: Directed Weighted Clustering Coefficient
Description: Allows the computation of clustering coefficients for directed and weighted networks by using different approaches.
It allows to compute clustering coefficients that are not present in 'igraph' package.
A description of clustering coefficients can be found in "Directed clustering in weighted networks: a new perspective", Clemente, G.P., Grassi, R. (2017),
<doi:10.1016/j.chaos.2017.12.007>.
Author: Gian Paolo Clemente [cre, aut]
,
Rosanna Grassi [ctb]
Maintainer: Gian Paolo Clemente <gianpaolo.clemente@unicatt.it>
Diff between DirectedClustering versions 0.1.1 dated 2018-01-11 and 1.0.0 dated 2024-09-24
DESCRIPTION | 24 ++++--- MD5 | 13 ++-- NAMESPACE | 6 + NEWS.md |only R/ClustBCG.R | 91 +++++++++++++++++++++++++--- R/ClustF.R | 69 +++++++++++++++++++++ man/ClustBCG.Rd | 180 ++++++++++++++++++++++++++------------------------------ man/ClustF.Rd | 173 +++++++++++++++++++++++++---------------------------- 8 files changed, 343 insertions(+), 213 deletions(-)
More information about DirectedClustering at CRAN
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Title: Identify Relevant Clinical Codes and Evaluate Their Use
Description: Generate a candidate code list for the Observational Medical Outcomes Partnership (OMOP) common data model based on string matching. For a given search strategy, a candidate code list will be returned.
Author: Edward Burn [aut, cre] ,
Marti Catala [ctb] ,
Xihang Chen [aut] ,
Nuria Mercade-Besora [aut] ,
Mike Du [ctb] ,
Danielle Newby [ctb]
Maintainer: Edward Burn <edward.burn@ndorms.ox.ac.uk>
Diff between CodelistGenerator versions 3.1.0 dated 2024-07-12 and 3.2.0 dated 2024-09-24
DESCRIPTION | 15 MD5 | 95 NAMESPACE | 3 NEWS.md | 98 R/getDoseUnit.R | 102 R/helperFunctions.R |only R/runSearch.R | 1000 +-- R/stratifyByConcept.R | 174 R/stratifyByDoseUnit.R | 280 R/stratifyByRoute.R | 268 R/subsetOnDoseUnit.R | 200 R/summariseAchillesCodeUse.R | 385 - R/summariseOrphanCodes.R | 344 - R/tableAchillesCodeUse.R | 288 - R/tableCodeUse.R | 330 - R/vocabUtilities.R | 1300 ++-- build/vignette.rds |binary inst/doc/a01_Introduction_to_CodelistGenerator.html | 2 inst/doc/a02_Candidate_codes_OA.html | 2 inst/doc/a03_Options_for_CodelistGenerator.Rmd | 434 - inst/doc/a03_Options_for_CodelistGenerator.html | 2 inst/doc/a04_Vocab_based_codelists.html | 108 inst/not_all_concept_sets/cohort_def.json | 5706 ++++++++++---------- man/CodelistGenerator-package.Rd | 7 man/availableATC.Rd |only man/availableICD10.Rd |only man/availableIngredients.Rd |only man/getConceptClassId.Rd | 60 man/getDoseUnit.Rd | 38 man/stratifyByConcept.Rd | 44 man/stratifyByDoseUnit.Rd | 44 man/subsetOnDoseUnit.Rd | 46 man/tableAchillesCodeUse.Rd | 58 man/tableCodeUse.Rd | 59 man/tableCohortCodeUse.Rd | 58 man/tableOrphanCodes.Rd | 56 tests/testthat/test-compareCodelists.R | 254 tests/testthat/test-dbms.R | 840 +- tests/testthat/test-findUnmappedCodes.R | 86 tests/testthat/test-getCandidateCodes.R | 668 +- tests/testthat/test-getDoseUnit.R | 22 tests/testthat/test-getMappings.R | 148 tests/testthat/test-helperFunctions.R |only tests/testthat/test-mockVocabRef.R | 26 tests/testthat/test-stratifyByConcept.R | 74 tests/testthat/test-stratifyByDoseUnit.R | 44 tests/testthat/test-stratifyByRouteCategory.R | 76 tests/testthat/test-subsetOnDoseUnit.R | 36 tests/testthat/test-tableAchillesCodeUse.R | 166 tests/testthat/test-tableCodeUse.R | 378 - vignettes/a03_Options_for_CodelistGenerator.Rmd | 434 - 51 files changed, 7325 insertions(+), 7533 deletions(-)
More information about CodelistGenerator at CRAN
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Title: A Data Interface Between 'GAMS' and R
Description: Read, analyze, modify, and write 'GAMS' (General Algebraic
Modeling System) data. The main focus of 'gamstransfer' is the
highly efficient transfer of data with 'GAMS' <https://www.gams.com/>,
while keeping these operations as simple as possible for the user. The
transfer of data usually takes place via an intermediate GDX (GAMS Data
Exchange) file. Additionally, 'gamstransfer' provides utility
functions to get an overview of 'GAMS' data and to check its validity.
Author: Atharv Bhosekar [aut, cre],
GAMS Development Corp. [cph, fnd],
GAMS Software GmbH [cph, fnd]
Maintainer: Atharv Bhosekar <abhosekar@gams.com>
Diff between gamstransfer versions 3.0.3 dated 2024-06-13 and 3.0.4 dated 2024-09-24
DESCRIPTION | 8 MD5 | 147 NEWS.md | 6 R/Alias.R | 240 - R/BaseAlias.R | 91 R/Container.R | 1750 +++++------ R/DomainViolation.R | 46 R/Equation.R | 523 +-- R/Parameter.R | 267 - R/Set.R | 146 R/SpecialValues.R | 36 R/Super.R | 193 - R/Symbol.R | 2679 +++++++++--------- R/UniverseAlias.R | 111 R/Variable.R | 546 +-- R/symbolTypes.R | 46 R/utility.R | 5 README.md | 2 man/Alias.Rd | 10 man/Container.Rd | 24 man/DomainViolation.Rd | 18 man/Equation.Rd | 10 man/Parameter.Rd | 12 man/Set.Rd | 8 man/SpecialValues.Rd | 8 man/UniverseAlias.Rd | 2 man/Variable.Rd | 8 man/dot-Symbol.Rd | 6 man/readGDX.Rd | 4 man/writeGDX.Rd | 4 src/Read.cpp | 12 src/gdx/src/gdlib/charmaps.cpp | 72 src/gdx/src/gdlib/charmaps.h | 20 src/gdx/src/gdlib/cmdpar.cpp | 2 src/gdx/src/gdlib/datastorage.h | 18 src/gdx/src/gdlib/dblutil.cpp | 85 src/gdx/src/gdlib/dblutil.h | 3 src/gdx/src/gdlib/gfileopen.cpp | 2 src/gdx/src/gdlib/glookup.h | 2 src/gdx/src/gdlib/gmsdata.h | 9 src/gdx/src/gdlib/gmsgen.h | 10 src/gdx/src/gdlib/gmsglob.cpp | 4 src/gdx/src/gdlib/gmsglob.h | 2 src/gdx/src/gdlib/gmsheapnew.h | 23 src/gdx/src/gdlib/gmsheaprep.cpp |only src/gdx/src/gdlib/gmsheaprep.h |only src/gdx/src/gdlib/gmsstrm.cpp | 35 src/gdx/src/gdlib/obfuscatestr.cpp | 2 src/gdx/src/gdlib/statlib.cpp | 51 src/gdx/src/gdlib/statlib.h | 20 src/gdx/src/gdlib/statlibobj.cpp | 13 src/gdx/src/gdlib/statlibobj.h | 2 src/gdx/src/gdlib/strhash.h | 4 src/gdx/src/gdlib/strindexbuf.h |only src/gdx/src/gdlib/strutilx.cpp | 18 src/gdx/src/gdlib/utils.cpp | 2 src/gdx/src/gdlib/utils.h | 37 src/gdx/src/gdx.h | 2 src/gdx/src/global/delphitypes.h | 165 - src/gdx/src/global/gmsspecs.cpp | 2 src/gdx/src/global/modhead.cpp | 5 src/gdx/src/global/modhead.h | 2 src/gdx/src/gxfile.cpp | 110 src/gdx/src/gxfile.h | 4 src/gdx/src/rtl/idglobal_p3.cpp | 4 src/gdx/src/rtl/idglobal_p3.h | 5 src/gdx/src/rtl/p3io.cpp | 106 src/gdx/src/rtl/p3process.cpp | 2 src/gdx/src/rtl/p3process.h | 2 src/gdx/src/rtl/p3utils.cpp | 30 src/gdx/src/rtl/p3utils.h | 2 src/gdx/src/rtl/stdthread.cpp | 9 src/gdx/src/rtl/stdthread.h | 6 src/gdx/src/rtl/sysutils_p3.cpp | 280 + src/gdx/src/rtl/sysutils_p3.h | 35 tests/testthat/test-read.R | 5504 ++++++++++++++++++------------------- 76 files changed, 7080 insertions(+), 6599 deletions(-)
Title: Bayesian QTL Mapping Toolkit
Description: QTL mapping toolkit for inbred crosses and recombinant
inbred lines. Includes maximum likelihood and Bayesian tools.
Author: Charles C. Berry [aut, cre]
Maintainer: Charles C. Berry <cberry@ucsd.edu>
Diff between bqtl versions 1.0-36 dated 2024-01-29 and 1.0-38 dated 2024-09-24
CHANGES | 7 ++++++- DESCRIPTION | 14 +++++++++----- MD5 | 6 +++--- src/lapadj.h | 24 ++++++++++++------------ 4 files changed, 30 insertions(+), 21 deletions(-)
Title: Easily Install and Load the 'openMSE' Packages
Description: The 'openMSE' package is designed for building operating models,
doing simulation modelling and management strategy evaluation for fisheries.
'openMSE' is an umbrella package for the 'MSEtool' (Management Strategy Evaluation
toolkit), 'DLMtool' (Data-Limited Methods toolkit), and
SAMtool (Stock Assessment Methods toolkit) packages. By loading and installing
'openMSE', users have access to the full functionality contained within
these packages. Learn more about 'openMSE' at <https://openmse.com/>.
Author: Adrian Hordyk [aut, cre] ,
Quang Huynh [aut],
Tom Carruthers [aut]
Maintainer: Adrian Hordyk <adrian@bluematterscience.com>
Diff between openMSE versions 1.0.0 dated 2021-02-08 and 1.0.1 dated 2024-09-24
DESCRIPTION | 15 ++--- MD5 | 37 ++++++++++-- NAMESPACE | 117 +++++++++++++++++++++++++++++++++++++++ NEWS.md | 3 + R/aa_importFrom.R |only R/data_objects.R |only R/get_data_frames.R |only R/plot_at_Age.R |only R/plot_timeseries.R |only R/scaling_functions.R |only R/themes.R |only R/utils.R | 21 +++++++ README.md | 129 +++++++++++++++++++++++++++++++++++++++++++- data |only man/At_Age_TS_Variables.Rd |only man/TS_Variables.Rd |only man/figures |only man/get_Assess_Estimates.Rd |only man/get_LifeHistory.Rd |only man/get_Metadata.Rd |only man/get_Years.Rd |only man/get_at_Age.Rd |only man/get_at_Length.Rd |only man/get_at_age_ts.Rd |only man/get_ts.Rd |only man/plot_TS.Rd |only man/plot_at_Age.Rd |only man/scale.Rd |only man/theme_default.Rd |only 29 files changed, 308 insertions(+), 14 deletions(-)
Title: Draw Histograms and Restricted Cubic Splines (RCS)
Description: You can use this function to easily draw a combined histogram and restricted cubic spline.
The function draws the graph through 'ggplot2'. RCS fitting requires the use of the rcs() function of the 'rms' package.
Can fit cox regression, logistic regression. This method was described by Per Kragh (2003) <doi:10.1002/sim.1497>.
Author: Qiang LIU [aut, cre]
Maintainer: Qiang LIU <dege857@163.com>
Diff between ggrcs versions 0.4.1 dated 2024-08-28 and 0.4.2 dated 2024-09-24
DESCRIPTION | 6 +++--- MD5 | 12 +++++++----- NAMESPACE | 2 ++ R/ggrcs.R | 4 +++- R/ggrcs2.R |only R/singlercs.R | 4 +++- inst/doc/ggrcs_vignette.html | 30 +++++++++++++++--------------- man/ggrcs2.Rd |only 8 files changed, 33 insertions(+), 25 deletions(-)
Title: Dataframe Difference Tool
Description: Functions for comparing two data.frames against
each other. The core functionality is to provide a detailed breakdown of any differences
between two data.frames as well as providing utility functions to help narrow down the
source of problems and differences.
Author: Craig Gower-Page [cre, aut],
Kieran Martin [aut]
Maintainer: Craig Gower-Page <craig.gower-page@roche.com>
Diff between diffdf versions 1.0.4 dated 2020-03-17 and 1.1.1 dated 2024-09-24
diffdf-1.0.4/diffdf/man/as_cropped_char.Rd |only diffdf-1.1.1/diffdf/DESCRIPTION | 18 diffdf-1.1.1/diffdf/MD5 | 155 - diffdf-1.1.1/diffdf/NAMESPACE | 9 diffdf-1.1.1/diffdf/NEWS.md | 24 diffdf-1.1.1/diffdf/R/ascii_tables.R | 325 ++- diffdf-1.1.1/diffdf/R/cast_variables.R | 156 - diffdf-1.1.1/diffdf/R/diffdf.R | 500 +++-- diffdf-1.1.1/diffdf/R/generate_keyname.R | 45 diffdf-1.1.1/diffdf/R/identify.R | 289 +-- diffdf-1.1.1/diffdf/R/is_different.R | 155 + diffdf-1.1.1/diffdf/R/issuerows.R | 139 - diffdf-1.1.1/diffdf/R/issues.R | 53 diffdf-1.1.1/diffdf/R/misc_functions.R | 78 diffdf-1.1.1/diffdf/R/print.R | 51 diffdf-1.1.1/diffdf/README.md | 53 diffdf-1.1.1/diffdf/build/vignette.rds |binary diffdf-1.1.1/diffdf/inst/WORDLIST |only diffdf-1.1.1/diffdf/inst/doc/diffdf-basic.R | 99 - diffdf-1.1.1/diffdf/inst/doc/diffdf-basic.Rmd | 103 - diffdf-1.1.1/diffdf/inst/doc/diffdf-basic.html | 857 +++++----- diffdf-1.1.1/diffdf/man/as_ascii_table.Rd | 7 diffdf-1.1.1/diffdf/man/as_character.Rd |only diffdf-1.1.1/diffdf/man/as_fmt_char.Rd |only diffdf-1.1.1/diffdf/man/assert_valid_keys.Rd |only diffdf-1.1.1/diffdf/man/cast_variables.Rd | 1 diffdf-1.1.1/diffdf/man/class_merge.Rd | 1 diffdf-1.1.1/diffdf/man/compare_vectors.Rd | 1 diffdf-1.1.1/diffdf/man/compare_vectors.default.Rd | 1 diffdf-1.1.1/diffdf/man/compare_vectors.factor.Rd | 1 diffdf-1.1.1/diffdf/man/compare_vectors.integer64.Rd |only diffdf-1.1.1/diffdf/man/compare_vectors.numeric.Rd | 6 diffdf-1.1.1/diffdf/man/construct_issue.Rd | 1 diffdf-1.1.1/diffdf/man/convert_to_issue.Rd | 1 diffdf-1.1.1/diffdf/man/describe_dataframe.Rd |only diffdf-1.1.1/diffdf/man/diffdf.Rd | 87 - diffdf-1.1.1/diffdf/man/diffdf_has_issues.Rd | 6 diffdf-1.1.1/diffdf/man/diffdf_issuerows.Rd | 28 diffdf-1.1.1/diffdf/man/factor_to_character.Rd | 3 diffdf-1.1.1/diffdf/man/find_difference.Rd | 3 diffdf-1.1.1/diffdf/man/generate_keyname.Rd | 3 diffdf-1.1.1/diffdf/man/get_casted_dataset.Rd | 3 diffdf-1.1.1/diffdf/man/get_casted_vector.Rd | 1 diffdf-1.1.1/diffdf/man/get_issue_dataset.Rd | 5 diffdf-1.1.1/diffdf/man/get_issue_message.Rd | 1 diffdf-1.1.1/diffdf/man/get_print_message.Rd | 1 diffdf-1.1.1/diffdf/man/get_print_message.default.Rd | 5 diffdf-1.1.1/diffdf/man/get_print_message.issue.Rd | 7 diffdf-1.1.1/diffdf/man/get_table.Rd | 3 diffdf-1.1.1/diffdf/man/has_unique_rows.Rd | 1 diffdf-1.1.1/diffdf/man/identify_att_differences.Rd | 3 diffdf-1.1.1/diffdf/man/identify_class_differences.Rd | 1 diffdf-1.1.1/diffdf/man/identify_column_order_differences.Rd |only diffdf-1.1.1/diffdf/man/identify_differences.Rd | 3 diffdf-1.1.1/diffdf/man/identify_extra_cols.Rd | 1 diffdf-1.1.1/diffdf/man/identify_extra_rows.Rd | 1 diffdf-1.1.1/diffdf/man/identify_matching_cols.Rd | 1 diffdf-1.1.1/diffdf/man/identify_mode_differences.Rd | 1 diffdf-1.1.1/diffdf/man/identify_properties.Rd | 1 diffdf-1.1.1/diffdf/man/identify_unsupported_cols.Rd | 1 diffdf-1.1.1/diffdf/man/invert.Rd | 3 diffdf-1.1.1/diffdf/man/is_variable_different.Rd | 3 diffdf-1.1.1/diffdf/man/print.diffdf.Rd | 16 diffdf-1.1.1/diffdf/man/recursive_reduce.Rd | 19 diffdf-1.1.1/diffdf/man/sort_then_join.Rd | 1 diffdf-1.1.1/diffdf/man/string_pad.Rd | 10 diffdf-1.1.1/diffdf/tests/testthat.R | 2 diffdf-1.1.1/diffdf/tests/testthat/_snaps |only diffdf-1.1.1/diffdf/tests/testthat/helper-create_test_data.R | 177 -- diffdf-1.1.1/diffdf/tests/testthat/test-cast_variables.R | 44 diffdf-1.1.1/diffdf/tests/testthat/test-class_compare.R |only diffdf-1.1.1/diffdf/tests/testthat/test-core.R | 363 +--- diffdf-1.1.1/diffdf/tests/testthat/test-dfdiff_has_issues.R | 72 diffdf-1.1.1/diffdf/tests/testthat/test-find_difference.R | 84 diffdf-1.1.1/diffdf/tests/testthat/test-generate-keyname.R | 54 diffdf-1.1.1/diffdf/tests/testthat/test-identify_att_differences.R | 70 diffdf-1.1.1/diffdf/tests/testthat/test-identify_column_order.R |only diffdf-1.1.1/diffdf/tests/testthat/test-identify_mode_differences.R | 314 +-- diffdf-1.1.1/diffdf/tests/testthat/test-invalid-keys.R |only diffdf-1.1.1/diffdf/tests/testthat/test-issuerows.R | 192 +- diffdf-1.1.1/diffdf/tests/testthat/test-miscellaneous.R | 261 ++- diffdf-1.1.1/diffdf/tests/testthat/test-print_output.R | 190 +- diffdf-1.1.1/diffdf/vignettes/diffdf-basic.Rmd | 103 - 83 files changed, 2937 insertions(+), 2340 deletions(-)
Title: Preprocessing Operators and Pipelines for 'mlr3'
Description: Dataflow programming toolkit that enriches 'mlr3' with a diverse
set of pipelining operators ('PipeOps') that can be composed into graphs.
Operations exist for data preprocessing, model fitting, and ensemble
learning. Graphs can themselves be treated as 'mlr3' 'Learners' and can
therefore be resampled, benchmarked, and tuned.
Author: Martin Binder [aut, cre],
Florian Pfisterer [aut] ,
Lennart Schneider [aut] ,
Bernd Bischl [aut] ,
Michel Lang [aut] ,
Sebastian Fischer [aut] ,
Susanne Dandl [aut],
Keno Mersmann [ctb],
Maximilian Muecke [ctb]
Maintainer: Martin Binder <mlr.developer@mb706.com>
Diff between mlr3pipelines versions 0.6.0 dated 2024-07-01 and 0.7.0 dated 2024-09-24
mlr3pipelines-0.6.0/mlr3pipelines/inst/doc/comparison_mlr3pipelines_mlr_sklearn.html |only mlr3pipelines-0.6.0/mlr3pipelines/inst/doc/introduction.html |only mlr3pipelines-0.7.0/mlr3pipelines/DESCRIPTION | 70 - mlr3pipelines-0.7.0/mlr3pipelines/MD5 | 272 ++-- mlr3pipelines-0.7.0/mlr3pipelines/NAMESPACE | 59 mlr3pipelines-0.7.0/mlr3pipelines/NEWS.md | 23 mlr3pipelines-0.7.0/mlr3pipelines/R/CnfAtom.R |only mlr3pipelines-0.7.0/mlr3pipelines/R/CnfClause.R |only mlr3pipelines-0.7.0/mlr3pipelines/R/CnfFormula.R |only mlr3pipelines-0.7.0/mlr3pipelines/R/CnfFormula_simplify.R |only mlr3pipelines-0.7.0/mlr3pipelines/R/CnfSymbol.R |only mlr3pipelines-0.7.0/mlr3pipelines/R/CnfUniverse.R |only mlr3pipelines-0.7.0/mlr3pipelines/R/Graph.R | 72 - mlr3pipelines-0.7.0/mlr3pipelines/R/GraphLearner.R | 405 +++++- mlr3pipelines-0.7.0/mlr3pipelines/R/LearnerAvg.R | 6 mlr3pipelines-0.7.0/mlr3pipelines/R/PipeOp.R | 11 mlr3pipelines-0.7.0/mlr3pipelines/R/PipeOpADAS.R |only mlr3pipelines-0.7.0/mlr3pipelines/R/PipeOpBLSmote.R |only mlr3pipelines-0.7.0/mlr3pipelines/R/PipeOpClassWeights.R | 21 mlr3pipelines-0.7.0/mlr3pipelines/R/PipeOpColRoles.R | 25 mlr3pipelines-0.7.0/mlr3pipelines/R/PipeOpImpute.R | 17 mlr3pipelines-0.7.0/mlr3pipelines/R/PipeOpImputeHist.R | 11 mlr3pipelines-0.7.0/mlr3pipelines/R/PipeOpImputeLearner.R | 12 mlr3pipelines-0.7.0/mlr3pipelines/R/PipeOpImputeOOR.R | 19 mlr3pipelines-0.7.0/mlr3pipelines/R/PipeOpMutate.R | 4 mlr3pipelines-0.7.0/mlr3pipelines/R/PipeOpNMF.R | 1 mlr3pipelines-0.7.0/mlr3pipelines/R/PipeOpProxy.R | 37 mlr3pipelines-0.7.0/mlr3pipelines/R/PipeOpRenameColumns.R | 9 mlr3pipelines-0.7.0/mlr3pipelines/R/PipeOpRowApply.R |only mlr3pipelines-0.7.0/mlr3pipelines/R/PipeOpSmote.R | 31 mlr3pipelines-0.7.0/mlr3pipelines/R/PipeOpSmoteNC.R |only mlr3pipelines-0.7.0/mlr3pipelines/R/PipeOpThreshold.R | 31 mlr3pipelines-0.7.0/mlr3pipelines/R/PipeOpTrafo.R | 8 mlr3pipelines-0.7.0/mlr3pipelines/R/PipeOpTuneThreshold.R | 48 mlr3pipelines-0.7.0/mlr3pipelines/R/PipeOpVtreat.R | 53 mlr3pipelines-0.7.0/mlr3pipelines/R/Selector.R | 2 mlr3pipelines-0.7.0/mlr3pipelines/R/bibentries.R | 22 mlr3pipelines-0.7.0/mlr3pipelines/R/mlr_pipeops.R | 38 mlr3pipelines-0.7.0/mlr3pipelines/R/po.R | 3 mlr3pipelines-0.7.0/mlr3pipelines/R/utils.R | 9 mlr3pipelines-0.7.0/mlr3pipelines/build/partial.rdb |binary mlr3pipelines-0.7.0/mlr3pipelines/build/vignette.rds |binary mlr3pipelines-0.7.0/mlr3pipelines/inst/doc/extending.html | 2 mlr3pipelines-0.7.0/mlr3pipelines/inst/testthat/helper_functions.R | 3 mlr3pipelines-0.7.0/mlr3pipelines/man/CnfAtom.Rd |only mlr3pipelines-0.7.0/mlr3pipelines/man/CnfClause.Rd |only mlr3pipelines-0.7.0/mlr3pipelines/man/CnfFormula.Rd |only mlr3pipelines-0.7.0/mlr3pipelines/man/CnfSymbol.Rd |only mlr3pipelines-0.7.0/mlr3pipelines/man/CnfUniverse.Rd |only mlr3pipelines-0.7.0/mlr3pipelines/man/PipeOp.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/PipeOpEnsemble.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/PipeOpImpute.Rd | 7 mlr3pipelines-0.7.0/mlr3pipelines/man/PipeOpTargetTrafo.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/PipeOpTaskPreproc.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/PipeOpTaskPreprocSimple.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr3pipelines-package.Rd | 6 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_learners_graph.Rd | 65 + mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_adas.Rd |only mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_blsmote.Rd |only mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_boxcox.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_branch.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_chunk.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_classbalancing.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_classifavg.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_classweights.Rd | 19 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mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_imputehist.Rd | 15 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_imputelearner.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_imputemean.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_imputemedian.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_imputemode.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_imputeoor.Rd | 23 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_imputesample.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_kernelpca.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_learner.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_missind.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_modelmatrix.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_multiplicityexply.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_multiplicityimply.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_mutate.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_nmf.Rd | 5 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_nop.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_ovrsplit.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_ovrunite.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_pca.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_proxy.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_quantilebin.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_randomprojection.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_randomresponse.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_regravg.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_removeconstants.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_renamecolumns.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_replicate.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_rowapply.Rd |only mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_scale.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_scalemaxabs.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_scalerange.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_select.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_smote.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_smotenc.Rd |only mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_spatialsign.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_subsample.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_targetinvert.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_targetmutate.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_targettrafoscalerange.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_textvectorizer.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_threshold.Rd | 12 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_tunethreshold.Rd | 15 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_unbranch.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_updatetarget.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_vtreat.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/mlr_pipeops_yeojohnson.Rd | 4 mlr3pipelines-0.7.0/mlr3pipelines/man/po.Rd | 2 mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/setup.R | 1 mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_CnfAtom.R |only mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_CnfClause.R |only mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_CnfFormula.R |only mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_CnfFormula_simplify.R |only mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_CnfSymbol.R |only mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_CnfUniverse.R |only mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_Graph.R | 160 ++ mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_GraphLearner.R | 593 +++++++++- mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_dictionary.R | 28 mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_pipeop_adas.R |only mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_pipeop_blsmote.R |only mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_pipeop_classweights.R | 3 mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_pipeop_colroles.R | 11 mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_pipeop_encodelmer.R | 2 mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_pipeop_impute.R | 22 mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_pipeop_imputelearner.R | 3 mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_pipeop_learner.R | 5 mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_pipeop_renamecolumns.R | 5 mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_pipeop_rowapply.R |only mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_pipeop_smote.R | 27 mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_pipeop_smotenc.R |only mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_pipeop_threshold.R | 50 mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_pipeop_tunethreshold.R | 209 +++ mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/test_pipeop_vtreat.R | 4 mlr3pipelines-0.7.0/mlr3pipelines/tests/testthat/testdata |only 153 files changed, 2488 insertions(+), 384 deletions(-)
Title: Comparison of Binary Diagnostic Tests in a Paired Study Design
Description: Comparison of the accuracy of two binary diagnostic tests in a "paired" study design, i.e. when each test is applied to each subject in the study.
Author: Christian Stock [aut, cre] ,
Thomas Hielscher [aut],
Andrea Discacciati [aut]
Maintainer: Christian Stock <christian.stock@boehringer-ingelheim.com>
Diff between DTComPair versions 1.2.4 dated 2024-04-10 and 1.2.6 dated 2024-09-24
DESCRIPTION | 8 - MD5 | 31 +++--- NAMESPACE | 56 ++++++++--- NEWS.md | 40 ++++++-- R/DLR.R | 3 R/DTComPair-package.R |only R/DTComPair.R | 246 +++++++++++++++++++++++++++++++++++++------------- R/dlr.regtest.R | 1 R/pv.prev.R | 1 R/sesp.diff.ci.R | 5 - R/sesp.rel.R | 1 R/tpffpf.rel.R | 1 README.md | 42 ++++++-- inst/CITATION | 4 inst/WORDLIST | 6 + man/acc.1test.Rd | 53 +++++++++- man/acc.paired.Rd | 16 ++- 17 files changed, 386 insertions(+), 128 deletions(-)
Title: Efficient Estimation Under Staggered Treatment Timing
Description: Efficiently estimates treatment effects in settings with randomized staggered rollouts, using tools
proposed by Roth and Sant'Anna (2021) <doi:10.48550/arXiv.2102.01291>.
Author: Jonathan Roth [aut],
Pedro H.C. Sant'Anna [aut, cre]
Maintainer: Pedro H.C. Sant'Anna <pedrohcgs@gmail.com>
Diff between staggered versions 1.1 dated 2021-09-15 and 1.2.1 dated 2024-09-24
DESCRIPTION | 13 MD5 | 39 NAMESPACE | 19 R/RcppExports.R | 30 R/balance_checks.R |only R/compute_balance_test.R |only R/compute_efficient_estimator_and_se.R | 1444 +++++++++++++++---------------- R/create_A0_lists.R | 350 +++---- R/globals.R |only README.md | 531 +++++------ build/partial.rdb |binary man/balance_checks.Rd |only man/compute_Betastar.Rd | 68 - man/compute_Xhat.Rd | 40 man/compute_balance_test.Rd |only man/compute_g_level_summaries.Rd | 54 - man/create_A0_list.Rd | 40 man/figures/README-unnamed-chunk-7-1.png |binary man/pj_officer_level_balanced.Rd | 88 - man/staggered.Rd | 222 ++-- man/staggered_cs.Rd | 177 +-- man/staggered_sa.Rd | 176 +-- src/code.cpp | 1 23 files changed, 1591 insertions(+), 1701 deletions(-)
Title: Read and Write '.gltf' and '.glb' Files
Description: The 'glTF' file format is used to describe 3D models. This package
provides read and write functions to work with it.
Author: Duncan Murdoch [aut, cre],
Morten S. Mikkelsen [cph]
Maintainer: Duncan Murdoch <murdoch.duncan@gmail.com>
Diff between rgl2gltf versions 1.0.3 dated 2022-08-19 and 1.0.5 dated 2024-09-24
DESCRIPTION | 8 MD5 | 42 NAMESPACE | 7 NEWS.md | 5 R/PBR.R | 10 R/gltfObj.R | 10 R/gltfWidget.R | 10 README.md | 24 build/vignette.rds |binary inst/doc/shininess.R | 2 inst/doc/shininess.html | 8879 +++++++++++++++++++++++++++++++++++++++++---- inst/shaders/pbr-frag.glsl | 8 man/Gltf.Rd | 2 man/as.gltf.Rd | 2 man/as.rglscene.Rd | 4 man/gltfWidget.Rd | 4 man/modifyShaders.Rd | 2 man/playgltf.Rd | 4 man/setPBRshaders.Rd | 2 man/showTags.Rd | 2 src/calc_tangents.cpp | 2 src/mikktspace.c | 12 22 files changed, 8304 insertions(+), 737 deletions(-)
Title: Score Redistricting Plans with 'PlanScore'
Description: Provides access to the 'PlanScore' Application Programming Interface
(<https://github.com/PlanScore/PlanScore/blob/main/API.md>) for scoring redistricting
plans. Allows for upload of plans from block assignment files and shape files.
For shapes in memory, such as from 'sf' or 'redist', it processes them to save
and upload. Includes tools for tidying responses and saving output from the
website.
Author: Christopher T. Kenny [aut, trl, cre] ,
Michal Migurski [aut] ,
Cory McCartan [art]
Maintainer: Christopher T. Kenny <christopherkenny@fas.harvard.edu>
Diff between planscorer versions 0.0.1 dated 2024-02-23 and 0.0.2 dated 2024-09-24
DESCRIPTION | 14 +++++--- MD5 | 15 +++++---- NAMESPACE | 1 R/capture.R | 72 +++++++++++++++++++++------------------------ R/save.R | 5 ++- man/ps_capture.Rd |only man/ps_save.Rd | 5 ++- man/upload.Rd | 2 - tests/testthat/test-save.R | 7 +++- 9 files changed, 67 insertions(+), 54 deletions(-)
Title: Parallel Factor Analysis Modelling of Longitudinal Microbiome
Data
Description: Creation and selection of PARAllel FACtor Analysis (PARAFAC)
models of longitudinal microbiome data. You can import your own data with
our import functions or use one of the example datasets to create your own
PARAFAC models. Selection of the optimal number of components can be done
using assessModelQuality() and assessModelStability(). The selected model can
then be plotted using plotPARAFACmodel(). The Parallel Factor
Analysis method was originally described by Caroll and Chang (1970)
<doi:10.1007/BF02310791> and Harshman (1970)
<https://www.psychology.uwo.ca/faculty/harshman/wpppfac0.pdf>.
Author: Geert Roelof van der Ploeg [aut, cre]
,
Johan Westerhuis [ctb] ,
Anna Heintz-Buschart [ctb] ,
Age Smilde [ctb] ,
University of Amsterdam [cph, fnd]
Maintainer: Geert Roelof van der Ploeg <g.r.ploeg@uva.nl>
Diff between parafac4microbiome versions 1.0.2 dated 2024-09-17 and 1.0.3 dated 2024-09-24
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++++++ inst/doc/Fujita2023_analysis.html | 6 +++--- tests/testthat/test-parafac_gradient.R | 2 +- 5 files changed, 17 insertions(+), 11 deletions(-)
More information about parafac4microbiome at CRAN
Permanent link
Title: Fast Principal Component Analysis for Outlier Detection
Description: Methods to detect genetic markers involved in biological
adaptation. 'pcadapt' provides statistical tools for outlier detection based on
Principal Component Analysis. Implements the method described in (Luu, 2016)
<DOI:10.1111/1755-0998.12592> and later revised in (Privé, 2020)
<DOI:10.1093/molbev/msaa053>.
Author: Keurcien Luu [aut],
Michael Blum [aut],
Florian Prive [aut, cre],
Eric Bazin [ctb],
Nicolas Duforet-Frebourg [ctb]
Maintainer: Florian Prive <florian.prive.21@gmail.com>
Diff between pcadapt versions 4.3.5 dated 2023-08-29 and 4.4.0 dated 2024-09-24
DESCRIPTION | 8 ++++---- MD5 | 19 ++++++++++--------- NEWS.md | 4 ++++ R/RcppExports.R | 4 ++++ R/iram.R | 8 +++----- R/pcadapt.R | 4 ++-- R/plotUtils.R | 2 +- README.md | 10 +++++----- src/Makevars | 1 - src/RcppExports.cpp | 15 +++++++++++++++ src/total-var.cpp |only 11 files changed, 48 insertions(+), 27 deletions(-)
Title: Easily Create Structured Lists or Data Frames with Input
Validation
Description: Easily define templates for lists and data frames that validate
each element. Specify the expected type (i.e., character, numeric, etc),
expected length, minimum and maximum values, allowable values, and more for
each element in your data. Decide whether violations of these expectations
should throw an error or a warning. This package is useful for validating
data within R processes which pull from dynamic data sources such as
databases and web APIs to provide an extra layer of validation around input
and output data.
Author: Chris Walker [aut, cre, cph]
Maintainer: Chris Walker <walkerjameschris@gmail.com>
Diff between dataclass versions 0.3.0 dated 2023-08-07 and 1.0.0 dated 2024-09-24
DESCRIPTION | 10 +++++----- MD5 | 32 ++++++++++++++++++++------------ NAMESPACE | 5 +++++ R/dataclass-package.R |only R/typing.R |only README.md | 7 +++++++ man/any_obj.Rd | 7 ++++--- man/atm_vec.Rd | 9 +++++---- man/chr_vec.Rd | 11 ++++++----- man/data_validator.Rd | 13 +++++++------ man/dataclass-package.Rd |only man/dataclass.Rd | 11 ++++++----- man/df_like.Rd | 9 +++++---- man/dte_vec.Rd | 9 +++++---- man/enforce_types.Rd |only man/figures |only man/lgl_vec.Rd | 9 +++++---- man/num_vec.Rd | 13 +++++++------ 18 files changed, 87 insertions(+), 58 deletions(-)
Title: 'Rcpp' Bindings to 'FastAD' Auto-Differentiation
Description: The header-only 'C++' template library 'FastAD' for automatic
differentiation <https://github.com/JamesYang007/FastAD> is provided by
this package, along with a few illustrative examples that can all be called
from R.
Author: Dirk Eddelbuettel [aut, cre] ,
James Yang [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppFastAD versions 0.0.3 dated 2024-09-15 and 0.0.4 dated 2024-09-24
ChangeLog | 16 ++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- README.md | 6 ------ build/partial.rdb |binary inst/NEWS.Rd | 7 +++++++ inst/include/fastad_bits/forward/core/forward.hpp | 17 ++++++++++++----- src/Makevars | 2 +- src/Makevars.win | 2 +- 9 files changed, 49 insertions(+), 25 deletions(-)
Title: Functions for Clustering and Testing of Presence-Absence,
Abundance and Multilocus Genetic Data
Description: Distance-based parametric bootstrap tests for clustering with
spatial neighborhood information. Some distance measures,
Clustering of presence-absence, abundance and multilocus genetic data
for species delimitation, nearest neighbor
based noise detection. Genetic distances between communities.
Tests whether various distance-based regressions
are equal. Try package?prabclus for on overview.
Author: Christian Hennig [aut, cre],
Bernhard Hausdorf [aut]
Maintainer: Christian Hennig <christian.hennig@unibo.it>
Diff between prabclus versions 2.3-3 dated 2023-10-23 and 2.3-4 dated 2024-09-24
DESCRIPTION | 18 +++++++++++------- MD5 | 12 ++++++------ man/prabclust.Rd | 2 +- man/stressvals.Rd | 8 ++++---- tests/Examples/prabclus-Ex.Rout.save | 8 ++++---- tests/prabclustests.R | 2 +- tests/prabclustests.Rout.save | 16 +++++----------- 7 files changed, 32 insertions(+), 34 deletions(-)
Title: Facilitate Analysis of Proteomic Data from Olink
Description: A collection of functions to facilitate analysis of proteomic
data from Olink, primarily NPX data that has been exported from Olink
Software. The functions also work on QUANT data from
Olink by log- transforming the QUANT data. The functions are focused
on reading data, facilitating data wrangling and quality control
analysis, performing statistical analysis and generating figures to
visualize the results of the statistical analysis. The goal of this
package is to help users extract biological insights from proteomic
data run on the Olink platform.
Author: Kathleen Nevola [aut, cre] ,
Marianne Sandin [aut] ,
Jamey Guess [aut] ,
Simon Forsberg [aut] ,
Christoffer Cambronero [aut] ,
Pascal Pucholt [aut] ,
Boxi Zhang [aut] ,
Masoumeh Sheikhi [aut] ,
Klev Diamanti [aut] ,
Amrita Kar [aut] ,
Lei Conze [aut] [...truncated...]
Maintainer: Kathleen Nevola <biostattools@olink.com>
Diff between OlinkAnalyze versions 3.8.2 dated 2024-06-27 and 4.0.1 dated 2024-09-24
OlinkAnalyze-3.8.2/OlinkAnalyze/R/Olink_normalization.R |only OlinkAnalyze-3.8.2/OlinkAnalyze/tests/testthat/test-Olink_normalization.R |only OlinkAnalyze-4.0.1/OlinkAnalyze/DESCRIPTION | 62 OlinkAnalyze-4.0.1/OlinkAnalyze/MD5 | 204 + OlinkAnalyze-4.0.1/OlinkAnalyze/NAMESPACE | 4 OlinkAnalyze-4.0.1/OlinkAnalyze/NEWS.md | 40 OlinkAnalyze-4.0.1/OlinkAnalyze/R/Olink_anova.R | 182 + OlinkAnalyze-4.0.1/OlinkAnalyze/R/Olink_boxplot.R | 157 - OlinkAnalyze-4.0.1/OlinkAnalyze/R/Olink_color.R | 19 OlinkAnalyze-4.0.1/OlinkAnalyze/R/Read_NPX_data.R | 49 OlinkAnalyze-4.0.1/OlinkAnalyze/R/data.R | 24 OlinkAnalyze-4.0.1/OlinkAnalyze/R/linear_mixed_model.R | 103 OlinkAnalyze-4.0.1/OlinkAnalyze/R/olink_lod.R | 172 - OlinkAnalyze-4.0.1/OlinkAnalyze/R/olink_normalization.R |only OlinkAnalyze-4.0.1/OlinkAnalyze/R/olink_normalization_n.R | 3 OlinkAnalyze-4.0.1/OlinkAnalyze/R/olink_normalization_product.R |only OlinkAnalyze-4.0.1/OlinkAnalyze/R/olink_normalization_utils.R |only OlinkAnalyze-4.0.1/OlinkAnalyze/R/olink_outlier_detection_utils.R |only OlinkAnalyze-4.0.1/OlinkAnalyze/R/pca_plot.R | 4 OlinkAnalyze-4.0.1/OlinkAnalyze/R/read_npx_csv.R | 35 OlinkAnalyze-4.0.1/OlinkAnalyze/R/read_npx_parquet.R | 3 OlinkAnalyze-4.0.1/OlinkAnalyze/R/read_npx_zip.R | 8 OlinkAnalyze-4.0.1/OlinkAnalyze/R/sysdata.rda |only OlinkAnalyze-4.0.1/OlinkAnalyze/R/umap_plot.R | 4 OlinkAnalyze-4.0.1/OlinkAnalyze/build/vignette.rds |binary OlinkAnalyze-4.0.1/OlinkAnalyze/inst/doc/LOD.R | 32 OlinkAnalyze-4.0.1/OlinkAnalyze/inst/doc/LOD.Rmd | 232 + OlinkAnalyze-4.0.1/OlinkAnalyze/inst/doc/LOD.html | 364 ++- OlinkAnalyze-4.0.1/OlinkAnalyze/inst/doc/OutlierExclusion.R | 209 + OlinkAnalyze-4.0.1/OlinkAnalyze/inst/doc/OutlierExclusion.Rmd | 105 OlinkAnalyze-4.0.1/OlinkAnalyze/inst/doc/OutlierExclusion.html | 204 - OlinkAnalyze-4.0.1/OlinkAnalyze/inst/doc/Vignett.R | 266 -- OlinkAnalyze-4.0.1/OlinkAnalyze/inst/doc/Vignett.Rmd | 598 +---- OlinkAnalyze-4.0.1/OlinkAnalyze/inst/doc/Vignett.html | 1192 ++-------- OlinkAnalyze-4.0.1/OlinkAnalyze/inst/doc/bridging_E3072toEHT.R |only OlinkAnalyze-4.0.1/OlinkAnalyze/inst/doc/bridging_E3072toEHT.Rmd |only OlinkAnalyze-4.0.1/OlinkAnalyze/inst/doc/bridging_E3072toEHT.html |only OlinkAnalyze-4.0.1/OlinkAnalyze/inst/doc/bridging_introduction.R | 8 OlinkAnalyze-4.0.1/OlinkAnalyze/inst/doc/bridging_introduction.Rmd | 14 OlinkAnalyze-4.0.1/OlinkAnalyze/inst/doc/bridging_introduction.html | 113 OlinkAnalyze-4.0.1/OlinkAnalyze/inst/doc/plate_randomizer.html | 4 OlinkAnalyze-4.0.1/OlinkAnalyze/inst/extdata/Example_NPX_Data.csv | 4 OlinkAnalyze-4.0.1/OlinkAnalyze/inst/extdata/OlinkIDMapping.rds |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/figures/Bridging_schematic.png |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/figures/Outlier_PCA.png |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/figures/PCA_Outlier_Fig1.png |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/figures/PCA_Panel.png |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/figures/PCA_Treatment.png |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/figures/PCA_btw_product_before.png |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/figures/SCs_post_bridging.png |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/figures/SCs_pre_bridging.png |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/figures/assay_bridgeability.jpg |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/figures/bridges_post_bridging.png |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/figures/bridges_pre_bridging.png |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/figures/bridging_results.rds |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/figures/dist_boxplot.png |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/figures/label_samples_pca.png |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/figures/outlier_line_pca.png |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/figures/overlapping_samples_table.rds |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/figures/qc_label_plot.png |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/figures/qc_plot.png |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/figures/qc_site_plot.png |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/figures/sample_med_boxplot.png |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/figures/site_boxplot.png |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/manifest.Rd | 10 OlinkAnalyze-4.0.1/OlinkAnalyze/man/norm_internal_adjust.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/norm_internal_adjust_not_ref.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/norm_internal_adjust_ref.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/norm_internal_assay_median.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/norm_internal_bridge.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/norm_internal_cross_product.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/norm_internal_reference_median.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/norm_internal_rename_cols.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/norm_internal_subset.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/npx_data1.Rd | 16 OlinkAnalyze-4.0.1/OlinkAnalyze/man/npx_data2.Rd | 12 OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_anova.Rd | 28 OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_anova_posthoc.Rd | 34 OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_boxplot.Rd | 10 OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_bridgeselector.Rd | 10 OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_iqr.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_lmer.Rd | 89 OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_lmer_plot.Rd | 6 OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_lmer_posthoc.Rd | 24 OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_lod.Rd | 15 OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_median.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_median_iqr_outlier.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_norm_input_assay_overlap.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_norm_input_check.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_norm_input_check_df_cols.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_norm_input_check_samples.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_norm_input_class.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_norm_input_clean_assays.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_norm_input_cross_product.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_norm_input_norm_method.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_norm_input_ref_medians.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_norm_input_validate.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_normalization.Rd | 307 +- OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_normalization_bridgeable.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_normalization_n.Rd | 77 OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_normalization_qs.Rd |only OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_one_non_parametric.Rd | 22 OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_one_non_parametric_posthoc.Rd | 18 OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_ordinalRegression.Rd | 18 OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_ordinalRegression_posthoc.Rd | 18 OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_pathway_enrichment.Rd | 72 OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_pca_plot.Rd | 6 OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_plate_randomizer.Rd | 8 OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_ttest.Rd | 32 OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_umap_plot.Rd | 6 OlinkAnalyze-4.0.1/OlinkAnalyze/man/olink_wilcox.Rd | 26 OlinkAnalyze-4.0.1/OlinkAnalyze/man/pipe.Rd | 2 OlinkAnalyze-4.0.1/OlinkAnalyze/man/read_NPX.Rd | 22 OlinkAnalyze-4.0.1/OlinkAnalyze/man/read_npx_csv.Rd | 22 OlinkAnalyze-4.0.1/OlinkAnalyze/man/read_npx_parquet.Rd | 16 OlinkAnalyze-4.0.1/OlinkAnalyze/man/read_npx_zip.Rd | 22 OlinkAnalyze-4.0.1/OlinkAnalyze/tests/data/example_3k_data.R |only OlinkAnalyze-4.0.1/OlinkAnalyze/tests/data/example_HT_data.R |only OlinkAnalyze-4.0.1/OlinkAnalyze/tests/data/ref_results_norm.R |only OlinkAnalyze-4.0.1/OlinkAnalyze/tests/testthat/_snaps/olink_Pathway_Heatmap |only OlinkAnalyze-4.0.1/OlinkAnalyze/tests/testthat/_snaps/olink_Pathway_Visualization |only OlinkAnalyze-4.0.1/OlinkAnalyze/tests/testthat/helper-get_example_olink_data.R |only OlinkAnalyze-4.0.1/OlinkAnalyze/tests/testthat/test-Olink_anova.R | 88 OlinkAnalyze-4.0.1/OlinkAnalyze/tests/testthat/test-Read_NPX_data.R | 15 OlinkAnalyze-4.0.1/OlinkAnalyze/tests/testthat/test-linear_mixed_model.R | 3 OlinkAnalyze-4.0.1/OlinkAnalyze/tests/testthat/test-olink_normalization.R |only OlinkAnalyze-4.0.1/OlinkAnalyze/tests/testthat/test-olink_normalization_n.R | 490 ++-- OlinkAnalyze-4.0.1/OlinkAnalyze/tests/testthat/test-olink_normalization_product.R |only OlinkAnalyze-4.0.1/OlinkAnalyze/tests/testthat/test-olink_normalization_utils.R |only OlinkAnalyze-4.0.1/OlinkAnalyze/vignettes/LOD.Rmd | 232 + OlinkAnalyze-4.0.1/OlinkAnalyze/vignettes/OutlierExclusion.Rmd | 105 OlinkAnalyze-4.0.1/OlinkAnalyze/vignettes/Vignett.Rmd | 598 +---- OlinkAnalyze-4.0.1/OlinkAnalyze/vignettes/bridging_E3072toEHT.Rmd |only OlinkAnalyze-4.0.1/OlinkAnalyze/vignettes/bridging_introduction.Rmd | 14 134 files changed, 3478 insertions(+), 3433 deletions(-)
Title: Estimation and Testing for the Multivariate t-Distribution
Description: Routines to perform estimation and inference under the multivariate
t-distribution <doi:10.1007/s10182-022-00468-2>. Currently, the following methodologies
are implemented: multivariate mean and covariance estimation, hypothesis testing
about equicorrelation and homogeneity of variances, the Wilson-Hilferty transformation,
QQ-plots with envelopes and random variate generation.
Author: Felipe Osorio [aut, cre]
Maintainer: Felipe Osorio <felipe.osorios@usm.cl>
Diff between MVT versions 0.3-8 dated 2023-01-27 and 0.3-81 dated 2024-09-24
MVT-0.3-8/MVT/R/random.R |only MVT-0.3-8/MVT/build |only MVT-0.3-8/MVT/man/rmt.Rd |only MVT-0.3-8/MVT/src/random.c |only MVT-0.3-81/MVT/ChangeLog | 13 +++++++---- MVT-0.3-81/MVT/DESCRIPTION | 12 ++++++---- MVT-0.3-81/MVT/MD5 | 39 +++++++++++++++++----------------- MVT-0.3-81/MVT/NAMESPACE | 2 - MVT-0.3-81/MVT/R/RNG.R |only MVT-0.3-81/MVT/R/distn.R |only MVT-0.3-81/MVT/inst/CITATION | 12 +++++----- MVT-0.3-81/MVT/man/envelope.Rd | 4 +-- MVT-0.3-81/MVT/man/kurtosis.Rd | 2 - MVT-0.3-81/MVT/man/mStudent.Rd |only MVT-0.3-81/MVT/man/studentFit.Rd | 5 ++-- MVT-0.3-81/MVT/man/wilson.hilferty.Rd | 4 +-- MVT-0.3-81/MVT/src/RNG.c |only MVT-0.3-81/MVT/src/R_init_MVT.c | 14 ++++++++---- MVT-0.3-81/MVT/src/base.c | 6 ++--- MVT-0.3-81/MVT/src/dispatcher.c | 6 ++--- MVT-0.3-81/MVT/src/distn.c |only MVT-0.3-81/MVT/src/family.c | 10 ++++---- MVT-0.3-81/MVT/src/fitter_DIAG.c | 8 +++--- MVT-0.3-81/MVT/src/interface.c | 32 ++++++++++++++++++++------- MVT-0.3-81/MVT/src/shared.c | 12 +++++----- 25 files changed, 105 insertions(+), 76 deletions(-)
Title: Bootstrap Hyperparameter Selection for PLS Models and Extensions
Description: Several implementations of non-parametric stable bootstrap-based techniques to determine the numbers of components for Partial Least Squares linear or generalized linear regression models as well as and sparse Partial Least Squares linear or generalized linear regression models. The package collects techniques that were published in a book chapter (Magnanensi et al. 2016, 'The Multiple Facets of Partial Least Squares and Related Methods', <doi:10.1007/978-3-319-40643-5_18>) and two articles (Magnanensi et al. 2017, 'Statistics and Computing', <doi:10.1007/s11222-016-9651-4>) and (Magnanensi et al. 2021, 'Frontiers in Applied Mathematics and Statistics', <doi:10.3389/fams.2021.693126>).
Author: Frederic Bertrand [cre, aut] ,
Jeremy Magnanensi [aut],
Myriam Maumy-Bertrand [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@utt.fr>
Diff between bootPLS versions 0.9.9 dated 2021-07-15 and 1.0.1 dated 2024-09-24
DESCRIPTION | 12 MD5 | 74 ++-- NEWS.md | 8 R/YTplsR.R | 6 R/YTplsRglm.R | 4 R/YXadaptplsR.R | 4 R/bootPLS-package.R | 25 - R/bootstrap_functions.R | 28 - R/internal-bootPLS.R | 4 R/plots.R | 2 R/sgpls_bootYT.R | 26 - R/simul_data_UniYX_gamma.R | 4 R/spls.R | 10 README.md | 649 +++++++++++++++----------------------- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 31 - inst/doc/UseNbcomp.R | 97 ----- inst/doc/UseNbcomp.Rmd | 8 inst/doc/UseNbcomp.html | 713 +++++++++++------------------------------- man/bootPLS-package.Rd | 37 +- man/coefs.plsR.CSim.Rd | 4 man/coefs.plsR.adapt.ncomp.Rd | 4 man/coefs.plsRglm.CSim.Rd | 14 man/coefs.sgpls.CSim.Rd | 14 man/internal-bootPLS.Rd | 4 man/nbcomp.bootplsR.Rd | 4 man/nbcomp.bootplsRglm.Rd | 4 man/nbcomp.bootsgpls.Rd | 4 man/nbcomp.bootsgpls.para.Rd | 4 man/nbcomp.bootspls.Rd | 4 man/nbcomp.bootspls.para.Rd | 4 man/permcoefs.plsR.CSim.Rd | 4 man/permcoefs.plsRglm.CSim.Rd | 14 man/permcoefs.sgpls.CSim.Rd | 8 man/signpred2.Rd | 2 man/simul_data_UniYX_gamma.Rd | 4 vignettes/UseNbcomp.Rmd | 8 38 files changed, 639 insertions(+), 1207 deletions(-)
Title: Radiocarbon Equations
Description: Provides functions for the calibration of radiocarbon dates, as well as options to calculate different radiocarbon realms (C14 age, F14C, pMC, D14C) and estimating the effects of contamination or local reservoir offsets (Reimer and Reimer 2001 <doi:10.1017/S0033822200038339>). The methods follow long-established recommendations such as Stuiver and Polach (1977) <doi:10.1017/S0033822200003672> and Reimer et al. (2004) <doi:10.1017/S0033822200033154>. This package accompanies the data package 'rintcal'.
Author: Maarten Blaauw [aut, cre]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between rice versions 0.1.1 dated 2024-09-02 and 0.2.0 dated 2024-09-24
DESCRIPTION | 19 ++- MD5 | 46 +++++--- NAMESPACE | 34 +++--- NEWS.md | 13 ++ R/calibrate.R | 21 +-- R/marine.R |only R/plots.R | 68 ++++++++++-- R/rice-package.R | 18 +-- R/rice.R | 22 +--- R/shells.R |only build/partial.rdb |binary build/vignette.rds |binary data |only inst/CITATION | 17 ++- inst/doc/rice.R | 27 ++++- inst/doc/rice.Rmd | 80 ++++++++++++-- inst/doc/rice.html | 268 ++++++++++++++++++++++++++++++++------------------ man/caldist.Rd | 2 man/draw.ccurve.Rd | 3 man/draw.dates.Rd | 2 man/find.shells.Rd |only man/map.shells.Rd |only man/rice-package.Rd | 4 man/rice.Rd | 6 - man/shells.Rd |only man/shells.mean.Rd |only man/weighted_means.Rd |only vignettes/rice.Rmd | 80 ++++++++++++-- 28 files changed, 507 insertions(+), 223 deletions(-)
Title: Calculating Bilateral and Multilateral Price Indexes
Description: Preparing a scanner data set for price dynamics calculations (data selecting, data classification, data matching, data filtering). Computing bilateral and multilateral indexes. For details on these methods see: Diewert and Fox (2020)
<doi:10.1080/07350015.2020.1816176>, Białek (2019) <doi:10.2478/jos-2019-0014> or Białek (2020) <doi:10.2478/jos-2020-0037>.
Author: Jacek Bialek [aut, cre]
Maintainer: Jacek Bialek <jacek.bialek@uni.lodz.pl>
Diff between PriceIndices versions 0.2.0 dated 2024-08-16 and 0.2.1 dated 2024-09-24
DESCRIPTION | 6 +- MD5 | 8 +-- NEWS.md | 8 +++ R/f_data_processing.R | 12 ++-- R/f_extensions_multilateral_indices.R | 84 ++++++++++++++++++++++++++++++++++ 5 files changed, 106 insertions(+), 12 deletions(-)
Title: Tabular Data Suppression using Gaussian Elimination
Description: A statistical disclosure control tool to protect tables by suppression
using the Gaussian elimination secondary suppression algorithm
(Langsrud, 2024) <doi:10.1007/978-3-031-69651-0_6>. A suggestion is
to start by working with functions SuppressSmallCounts() and
SuppressDominantCells(). These functions use primary suppression functions for
the minimum frequency rule and the dominance rule, respectively. Novel
functionality for suppression of disclosive cells is also included. General
primary suppression functions can be supplied as input to the general working
horse function, GaussSuppressionFromData(). Suppressed frequencies can be
replaced by synthetic decimal numbers as described in
Langsrud (2019) <doi:10.1007/s11222-018-9848-9>.
Author: Oeyvind Langsrud [aut, cre] ,
Daniel Lupp [aut] ,
Hege Boevelstad [ctb] ,
Vidar Norstein Klungre [rev] ,
Statistics Norway [cph]
Maintainer: Oeyvind Langsrud <oyl@ssb.no>
Diff between GaussSuppression versions 0.8.8 dated 2024-06-28 and 0.9.0 dated 2024-09-24
DESCRIPTION | 25 ++++--- MD5 | 16 ++-- NAMESPACE | 1 NEWS.md | 21 ++++++ R/GaussSuppressionFromData.R | 84 +++++++++++++++++++------ R/Singleton.R | 6 + man/GaussSuppressionFromData.Rd | 25 ++++++- man/SingletonUniqueContributor.Rd | 3 tests/testthat/test-GaussSuppressionFromData.R | 65 ++++++++++++++++++- 9 files changed, 202 insertions(+), 44 deletions(-)
More information about GaussSuppression at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-18 0.1.1
2020-07-27 0.1.0
Title: Setting Download Method to 'wget'
Description: Provides function, wget_set(), to change the method (default to 'wget -c') using in download.file().
Using 'wget -c' allowing continued downloading, which is especially useful for slow internet connection and for downloading large files.
User can run wget_unset() to restore previous setting.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between wget versions 0.0.2 dated 2024-09-03 and 0.0.3 dated 2024-09-24
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/wget.R | 3 +++ 3 files changed, 8 insertions(+), 5 deletions(-)
Title: Model Based Clustering of Binary Dissimilarity Measurements
Description: Functions for fitting a Bayesian model for grouping binary
dissimilarity matrices in homogeneous clusters. Currently, it includes
methods only for binary data (<doi:10.18637/jss.v100.i16>).
Author: Sergio Venturini [aut, cre],
Raffaella Piccarreta [ctb]
Maintainer: Sergio Venturini <sergio.venturini@unicatt.it>
Diff between dmbc versions 1.0.2 dated 2024-01-16 and 1.0.3 dated 2024-09-24
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ R/dmbc-package.R | 21 ++++++++++++--------- R/dmbc.R | 7 ++++--- R/dmbc_classes.R | 10 ++++------ R/dmbc_control.R | 2 +- inst/include/dmbc.h | 3 +++ man/dmbc-package.Rd | 25 +++++++++++++------------ man/dmbc.Rd | 7 ++++--- man/dmbc_control.Rd | 2 +- man/plot-dmbc_fit-ANY-method.Rd | 5 ++--- man/plot-dmbc_fit_list-ANY-method.Rd | 5 ++--- src/distrib.cpp | 8 ++++---- 13 files changed, 67 insertions(+), 62 deletions(-)
Title: A Family of Beta Mixture Models for Clustering Beta-Valued DNA
Methylation Data
Description: A family of novel beta mixture models (BMMs) has been developed by Majumdar et al. (2022) <doi:10.48550/arXiv.2211.01938> to appositely model the beta-valued cytosine-guanine dinucleotide (CpG) sites, to objectively identify methylation state thresholds and to identify the differentially methylated CpG (DMC) sites using a model-based clustering approach. The family of beta mixture models employs different parameter constraints applicable to different study settings. The EM algorithm is used for parameter estimation, with a novel approximation during the M-step providing tractability and ensuring computational feasibility.
Author: Koyel Majumdar [aut, cre] ,
Romina Silva [aut],
Antoinette Sabrina Perry [aut],
Ronald William Watson [aut],
Andrea Rau [aut] ,
Florence Jaffrezic [aut],
Thomas Brendan Murphy [aut] ,
Isobel Claire Gormley [aut]
Maintainer: Koyel Majumdar <koyel.majumdar@ucdconnect.ie>
Diff between betaclust versions 1.0.3 dated 2023-09-29 and 1.0.4 dated 2024-09-24
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/em_icl.R | 2 +- build/partial.rdb |binary build/vignette.rds |binary 6 files changed, 15 insertions(+), 11 deletions(-)
Title: Enrichment Analysis using Multiple Ontologies and False
Discovery Rate
Description: Background - Traditional gene set enrichment analyses are
typically limited to a few ontologies and do not account for the
interdependence of gene sets or terms, resulting in overcorrected p-values.
To address these challenges, we introduce mulea, an R package offering
comprehensive overrepresentation and functional enrichment analysis.
Results - mulea employs a progressive empirical false discovery rate
(eFDR) method, specifically designed for interconnected biological data,
to accurately identify significant terms within diverse ontologies. mulea
expands beyond traditional tools by incorporating a wide range of
ontologies, encompassing Gene Ontology, pathways, regulatory elements,
genomic locations, and protein domains. This flexibility enables
researchers to tailor enrichment analysis to their specific questions,
such as identifying enriched transcriptional regulators in gene expression
data or overrepresented protein domains in protein sets. To facilitate
seamless analysis, mulea p [...truncated...]
Author: Cezary Turek [aut] ,
Marton Olbei [aut] ,
Tamas Stirling [aut, cre] ,
Gergely Fekete [aut] ,
Ervin Tasnadi [aut] ,
Leila Gul [aut],
Balazs Bohar [aut] ,
Balazs Papp [aut] ,
Wiktor Jurkowski [aut] ,
Eszter Ari [aut, cph]
Maintainer: Tamas Stirling <stirling.tamas@gmail.com>
Diff between mulea versions 1.0.1 dated 2024-06-19 and 1.1.0 dated 2024-09-24
DESCRIPTION | 59 +- MD5 | 29 - NEWS.md | 9 R/HypergeometricTest.R | 9 R/ORA.R | 38 + R/Plotting.R | 14 R/SetBasedEnrichmentTest.R | 13 R/set-based-enrichment-test.r | 17 inst/doc/mulea.R | 78 +++ inst/doc/mulea.Rmd | 102 ++++ inst/doc/mulea.html | 796 +++++++++++++++++++++++------------- man/SetBasedEnrichmentTest-class.Rd | 2 man/ora-class.Rd | 3 tests/testthat/testPermTest.R | 133 ++++++ vignettes/Venn.png |only vignettes/mulea.Rmd | 102 ++++ 16 files changed, 1028 insertions(+), 376 deletions(-)
Title: Additional Layout Algorithms for Network Visualizations
Description: Several new layout algorithms to visualize networks are provided which are not part of 'igraph'.
Most are based on the concept of stress majorization by Gansner et al. (2004) <doi:10.1007/978-3-540-31843-9_25>.
Some more specific algorithms allow the user to emphasize hidden group structures in networks or focus on specific nodes.
Author: David Schoch [aut, cre] ,
Mark Ortmann [ctb] ,
Felix Schoenenberger [ctb]
Maintainer: David Schoch <david@schochastics.net>
Diff between graphlayouts versions 1.1.1 dated 2024-03-09 and 1.2.0 dated 2024-09-24
graphlayouts-1.1.1/graphlayouts/build |only graphlayouts-1.1.1/graphlayouts/inst/doc |only graphlayouts-1.1.1/graphlayouts/vignettes |only graphlayouts-1.2.0/graphlayouts/DESCRIPTION | 27 + graphlayouts-1.2.0/graphlayouts/MD5 | 65 ++-- graphlayouts-1.2.0/graphlayouts/NAMESPACE | 1 graphlayouts-1.2.0/graphlayouts/NEWS.md | 7 graphlayouts-1.2.0/graphlayouts/R/annotate_functions.R | 151 ++++------ graphlayouts-1.2.0/graphlayouts/R/graph_manipulate.R | 31 -- graphlayouts-1.2.0/graphlayouts/R/graphlayouts.R | 2 graphlayouts-1.2.0/graphlayouts/R/layout_backbone.R | 18 - graphlayouts-1.2.0/graphlayouts/R/layout_large_graphs.R | 2 graphlayouts-1.2.0/graphlayouts/R/layout_multilevel.R | 8 graphlayouts-1.2.0/graphlayouts/R/layout_stress.R | 4 graphlayouts-1.2.0/graphlayouts/R/metro_multicriteria.R | 4 graphlayouts-1.2.0/graphlayouts/R/oaqc.R |only graphlayouts-1.2.0/graphlayouts/README.md | 50 +-- graphlayouts-1.2.0/graphlayouts/man/annotate_circle.Rd | 14 graphlayouts-1.2.0/graphlayouts/man/annotate_result.Rd |only graphlayouts-1.2.0/graphlayouts/man/as.edge_list.Rd |only graphlayouts-1.2.0/graphlayouts/man/draw_circle.Rd | 16 - graphlayouts-1.2.0/graphlayouts/man/figures/README-example_un-1.png |binary graphlayouts-1.2.0/graphlayouts/man/figures/README-flex_cent-1.png |binary graphlayouts-1.2.0/graphlayouts/man/graph_manipulate.Rd | 1 graphlayouts-1.2.0/graphlayouts/man/graphlayouts-package.Rd | 8 graphlayouts-1.2.0/graphlayouts/man/layout_as_metromap.Rd | 4 graphlayouts-1.2.0/graphlayouts/man/layout_centrality.Rd | 2 graphlayouts-1.2.0/graphlayouts/man/layout_stress.Rd | 2 graphlayouts-1.2.0/graphlayouts/man/oaqc.Rd |only graphlayouts-1.2.0/graphlayouts/src/Graph.cpp |only graphlayouts-1.2.0/graphlayouts/src/Graph.h |only graphlayouts-1.2.0/graphlayouts/src/QuadCensus.cpp |only graphlayouts-1.2.0/graphlayouts/src/QuadCensus.h |only graphlayouts-1.2.0/graphlayouts/src/RcppExports.cpp | 3 graphlayouts-1.2.0/graphlayouts/src/init.cpp |only graphlayouts-1.2.0/graphlayouts/tests/testthat/test-layout_backbone.R | 8 graphlayouts-1.2.0/graphlayouts/tests/testthat/test-layout_large_graphs.R | 6 graphlayouts-1.2.0/graphlayouts/tests/testthat/test-layout_multilevel.R | 72 ++-- 38 files changed, 266 insertions(+), 240 deletions(-)
Title: IRT Item-Person Map with 'ConQuest' Integration
Description: A powerful yet simple graphical tool available in the field of psychometrics is the Wright Map (also known as item maps or item-person maps), which presents the location of both respondents and items on the same scale. Wright Maps are commonly used to present the results of dichotomous or polytomous item response models. The 'WrightMap' package provides functions to create these plots from item parameters and person estimates stored as R objects. Although the package can be used in conjunction with any software used to estimate the IRT model (e.g. 'TAM', 'mirt', 'eRm' or 'IRToys' in 'R', or 'Stata', 'Mplus', etc.), 'WrightMap' features special integration with 'ConQuest' to facilitate reading and plotting its output directly.The 'wrightMap' function creates Wright Maps based on person estimates and item parameters produced by an item response analysis. The 'CQmodel' function reads output files created using 'ConQuest' software and creates a set of data frames for easy data manipulatio [...truncated...]
Author: David Torres Irribarra [aut, cre],
Rebecca Freund [aut]
Maintainer: David Torres Irribarra <david@torresirribarra.me>
Diff between WrightMap versions 1.3 dated 2022-06-18 and 1.4 dated 2024-09-24
DESCRIPTION | 18 +- MD5 | 38 ++--- NAMESPACE | 5 NEWS | 11 + R/CQmodel.R | 19 ++ R/itemClassic.R | 225 ++++++++++++++++++------------ R/itemHist.R | 118 +++++++++------- R/itemModern.R | 297 ++++++++++++++++++++-------------------- R/make.deltas.CQmodel.R | 7 R/make.thresholds.default.R | 2 R/make.thresholds.matrix.R | 4 R/personHist.R | 9 + R/sim.PCM.R |only README.md | 4 inst/CITATION | 15 +- man/ICCfit.Rd | 115 +++------------ man/WrightMap-package.Rd | 4 man/item.side.Rd | 322 ++++++++++++++++---------------------------- man/person.side.Rd | 132 +++++++++--------- man/sim.PCM.Rd |only man/wrightMap.Rd | 2 21 files changed, 657 insertions(+), 690 deletions(-)
Title: Machine Learning in R - Next Generation
Description: Efficient, object-oriented programming on the
building blocks of machine learning. Provides 'R6' objects for tasks,
learners, resamplings, and measures. The package is geared towards
scalability and larger datasets by supporting parallelization and
out-of-memory data-backends like databases. While 'mlr3' focuses on
the core computational operations, add-on packages provide additional
functionality.
Author: Michel Lang [aut] ,
Bernd Bischl [aut] ,
Jakob Richter [aut] ,
Patrick Schratz [aut] ,
Giuseppe Casalicchio [ctb] ,
Stefan Coors [ctb] ,
Quay Au [ctb] ,
Martin Binder [aut],
Florian Pfisterer [aut] ,
Raphael Sonabend [aut] ,
Lennart Schneider [ctb] , [...truncated...]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3 versions 0.20.2 dated 2024-07-29 and 0.21.0 dated 2024-09-24
DESCRIPTION | 24 MD5 | 358 +++--- NAMESPACE | 19 NEWS.md | 34 R/BenchmarkResult.R | 51 R/DataBackend.R | 14 R/DataBackendCbind.R | 15 R/DataBackendDataTable.R | 6 R/DataBackendMatrix.R | 55 R/DataBackendRbind.R | 15 R/DataBackendRename.R | 7 R/Learner.R | 134 +- R/LearnerClassif.R | 2 R/LearnerClassifDebug.R | 35 R/LearnerRegr.R | 48 R/LearnerRegrDebug.R | 41 R/LearnerRegrFeatureless.R | 25 R/Measure.R | 96 + R/MeasureAIC.R | 3 R/MeasureBIC.R | 3 R/MeasureElapsedTime.R | 11 R/MeasureInternalValidScore.R | 32 R/MeasureOOBError.R | 3 R/MeasureRegrRSQ.R |only R/MeasureSelectedFeatures.R | 3 R/MeasureSimple.R | 30 R/Prediction.R | 15 R/PredictionClassif.R | 2 R/PredictionData.R | 10 R/PredictionDataClassif.R | 23 R/PredictionDataRegr.R | 61 + R/PredictionRegr.R | 30 R/ResampleResult.R | 65 - R/Resampling.R | 1 R/ResamplingCustom.R | 4 R/ResamplingHoldout.R | 11 R/ResamplingInsample.R | 10 R/Task.R | 245 +++- R/TaskRegr.R | 2 R/as_prediction.R | 19 R/assertions.R | 24 R/benchmark.R | 3 R/default_fallback.R |only R/helper.R | 16 R/helper_exec.R | 14 R/helper_hashes.R | 5 R/marshal.R | 7 R/mlr_measures.R | 10 R/mlr_reflections.R | 17 R/mlr_sugar.R | 20 R/mlr_test_helpers.R | 3 R/partition.R | 91 - R/task_converters.R | 14 R/warn_deprecated.R |only R/worker.R | 54 R/zzz.R | 2 README.md | 16 inst/testthat/helper_autotest.R | 223 ++- inst/testthat/helper_expectations.R | 53 man/BenchmarkResult.Rd | 46 man/DataBackend.Rd | 12 man/DataBackendDataTable.Rd | 13 man/DataBackendMatrix.Rd | 19 man/Learner.Rd | 84 + man/LearnerClassif.Rd | 6 man/LearnerRegr.Rd | 20 man/Measure.Rd | 58 man/MeasureClassif.Rd | 5 man/MeasureRegr.Rd | 5 man/MeasureSimilarity.Rd | 5 man/Prediction.Rd | 26 man/PredictionClassif.Rd | 3 man/PredictionData.Rd | 7 man/PredictionRegr.Rd | 10 man/ResampleResult.Rd | 53 man/Task.Rd | 62 - man/TaskClassif.Rd | 3 man/TaskRegr.Rd | 3 man/TaskSupervised.Rd | 3 man/benchmark.Rd | 5 man/default_fallback.Rd |only man/deprecated_binding.Rd |only man/figures/mlr3verse.svg | 1177 ++++++++++---------- man/marshaling.Rd | 7 man/mlr_assertions.Rd | 2 man/mlr_learners_classif.debug.Rd | 29 man/mlr_learners_classif.featureless.Rd | 1 man/mlr_learners_classif.rpart.Rd | 1 man/mlr_learners_regr.debug.Rd | 31 man/mlr_learners_regr.featureless.Rd | 3 man/mlr_learners_regr.rpart.Rd | 1 man/mlr_measures.Rd | 1 man/mlr_measures_aic.Rd | 1 man/mlr_measures_bic.Rd | 1 man/mlr_measures_classif.acc.Rd | 12 man/mlr_measures_classif.auc.Rd | 1 man/mlr_measures_classif.bacc.Rd | 11 man/mlr_measures_classif.bbrier.Rd | 11 man/mlr_measures_classif.ce.Rd | 7 man/mlr_measures_classif.costs.Rd | 3 man/mlr_measures_classif.dor.Rd | 1 man/mlr_measures_classif.fbeta.Rd | 1 man/mlr_measures_classif.fdr.Rd | 1 man/mlr_measures_classif.fn.Rd | 3 man/mlr_measures_classif.fnr.Rd | 1 man/mlr_measures_classif.fomr.Rd | 1 man/mlr_measures_classif.fp.Rd | 2 man/mlr_measures_classif.fpr.Rd | 1 man/mlr_measures_classif.logloss.Rd | 7 man/mlr_measures_classif.mauc_au1p.Rd | 8 man/mlr_measures_classif.mauc_au1u.Rd | 8 man/mlr_measures_classif.mauc_aunp.Rd | 8 man/mlr_measures_classif.mauc_aunu.Rd | 8 man/mlr_measures_classif.mauc_mu.Rd |only man/mlr_measures_classif.mbrier.Rd | 9 man/mlr_measures_classif.mcc.Rd | 7 man/mlr_measures_classif.npv.Rd | 1 man/mlr_measures_classif.ppv.Rd | 1 man/mlr_measures_classif.prauc.Rd | 3 man/mlr_measures_classif.precision.Rd | 1 man/mlr_measures_classif.recall.Rd | 3 man/mlr_measures_classif.sensitivity.Rd | 3 man/mlr_measures_classif.specificity.Rd | 3 man/mlr_measures_classif.tn.Rd | 3 man/mlr_measures_classif.tnr.Rd | 3 man/mlr_measures_classif.tp.Rd | 3 man/mlr_measures_classif.tpr.Rd | 3 man/mlr_measures_debug_classif.Rd | 1 man/mlr_measures_elapsed_time.Rd | 7 man/mlr_measures_internal_valid_score.Rd | 38 man/mlr_measures_oob_error.Rd | 1 man/mlr_measures_regr.bias.Rd | 7 man/mlr_measures_regr.ktau.Rd | 6 man/mlr_measures_regr.mae.Rd | 7 man/mlr_measures_regr.mape.Rd | 7 man/mlr_measures_regr.maxae.Rd | 2 man/mlr_measures_regr.medae.Rd | 4 man/mlr_measures_regr.medse.Rd | 4 man/mlr_measures_regr.mse.Rd | 7 man/mlr_measures_regr.msle.Rd | 8 man/mlr_measures_regr.pbias.Rd | 7 man/mlr_measures_regr.pinball.Rd |only man/mlr_measures_regr.rae.Rd | 11 man/mlr_measures_regr.rmse.Rd | 7 man/mlr_measures_regr.rmsle.Rd | 7 man/mlr_measures_regr.rrse.Rd | 8 man/mlr_measures_regr.rse.Rd | 8 man/mlr_measures_regr.rsq.Rd | 145 +- man/mlr_measures_regr.sae.Rd | 2 man/mlr_measures_regr.smape.Rd | 4 man/mlr_measures_regr.srho.Rd | 2 man/mlr_measures_regr.sse.Rd | 2 man/mlr_measures_selected_features.Rd | 3 man/mlr_reflections.Rd | 4 man/mlr_resamplings_holdout.Rd | 4 man/mlr_resamplings_insample.Rd | 4 man/mlr_test_helpers.Rd | 3 man/partition.Rd | 58 man/resample.Rd | 2 man/task_check_col_roles.Rd |only man/warn_deprecated.Rd |only tests/testthat/test_DataBackendCbind.R | 21 tests/testthat/test_DataBackendMatrix.R | 36 tests/testthat/test_DataBackendRbind.R | 19 tests/testthat/test_Learner.R | 110 + tests/testthat/test_Measure.R | 46 tests/testthat/test_MeasureInternalValidScore.R | 18 tests/testthat/test_MeasureRegrRSQ.R |only tests/testthat/test_PredictionDataClassif.R | 24 tests/testthat/test_PredictionDataRegr.R | 60 + tests/testthat/test_PredictionRegr.R | 8 tests/testthat/test_Task.R | 142 +- tests/testthat/test_TaskUnsupervised.R | 5 tests/testthat/test_autotest.R |only tests/testthat/test_benchmark.R | 95 - tests/testthat/test_convert_task.R | 2 tests/testthat/test_default_fallback.R |only tests/testthat/test_encapsulate.R | 26 tests/testthat/test_errorhandling.R | 17 tests/testthat/test_fallback.R | 24 tests/testthat/test_mlr_learners_classif_debug.R | 10 tests/testthat/test_mlr_learners_regr_debug.R |only tests/testthat/test_mlr_learners_regr_featureless.R | 24 tests/testthat/test_mlr_reflections.R | 26 tests/testthat/test_partition.R | 37 tests/testthat/test_resample.R | 135 +- tests/testthat/test_warn_deprecated.R |only 187 files changed, 3387 insertions(+), 1853 deletions(-)
Title: Create Common TLGs Used in Clinical Trials
Description: Table, Listings, and Graphs (TLG) library for common outputs
used in clinical trials.
Author: Joe Zhu [aut, cre],
Daniel Sabanes Bove [aut],
Jana Stoilova [aut],
Davide Garolini [aut],
Emily de la Rua [aut],
Abinaya Yogasekaram [aut],
Heng Wang [aut],
Francois Collin [aut],
Adrian Waddell [aut],
Pawel Rucki [aut],
Chendi Liao [aut],
Jennifer [...truncated...]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between tern versions 0.9.5 dated 2024-06-21 and 0.9.6 dated 2024-09-24
tern-0.9.5/tern/man/count_values_funs.Rd |only tern-0.9.5/tern/man/estimate_proportions.Rd |only tern-0.9.5/tern/tests/testthat/test-estimate_incidence_rate.R |only tern-0.9.6/tern/DESCRIPTION | 35 tern-0.9.6/tern/MD5 | 319 +++-- tern-0.9.6/tern/NAMESPACE | 3 tern-0.9.6/tern/NEWS.md | 30 tern-0.9.6/tern/R/abnormal.R | 33 tern-0.9.6/tern/R/abnormal_by_baseline.R | 41 tern-0.9.6/tern/R/abnormal_by_marked.R | 30 tern-0.9.6/tern/R/abnormal_by_worst_grade.R | 29 tern-0.9.6/tern/R/abnormal_by_worst_grade_worsen.R | 26 tern-0.9.6/tern/R/analyze_colvars_functions.R | 2 tern-0.9.6/tern/R/analyze_functions.R | 4 tern-0.9.6/tern/R/analyze_variables.R | 14 tern-0.9.6/tern/R/analyze_vars_in_cols.R | 27 tern-0.9.6/tern/R/argument_convention.R | 6 tern-0.9.6/tern/R/compare_variables.R | 17 tern-0.9.6/tern/R/count_cumulative.R | 14 tern-0.9.6/tern/R/count_missed_doses.R | 15 tern-0.9.6/tern/R/count_occurrences.R | 17 tern-0.9.6/tern/R/count_occurrences_by_grade.R | 18 tern-0.9.6/tern/R/count_patients_events_in_cols.R | 12 tern-0.9.6/tern/R/count_patients_with_event.R | 9 tern-0.9.6/tern/R/count_patients_with_flags.R | 9 tern-0.9.6/tern/R/count_values.R | 21 tern-0.9.6/tern/R/decorate_grob.R | 34 tern-0.9.6/tern/R/estimate_multinomial_rsp.R | 7 tern-0.9.6/tern/R/estimate_proportion.R | 22 tern-0.9.6/tern/R/g_forest.R | 10 tern-0.9.6/tern/R/g_km.R | 4 tern-0.9.6/tern/R/g_lineplot.R | 59 - tern-0.9.6/tern/R/h_biomarkers_subgroups.R | 3 tern-0.9.6/tern/R/h_incidence_rate.R |only tern-0.9.6/tern/R/h_km.R | 2 tern-0.9.6/tern/R/h_response_biomarkers_subgroups.R | 4 tern-0.9.6/tern/R/h_response_subgroups.R | 2 tern-0.9.6/tern/R/h_survival_biomarkers_subgroups.R | 2 tern-0.9.6/tern/R/h_survival_duration_subgroups.R | 2 tern-0.9.6/tern/R/incidence_rate.R | 352 ++---- tern-0.9.6/tern/R/odds_ratio.R | 24 tern-0.9.6/tern/R/prop_diff.R | 9 tern-0.9.6/tern/R/prop_diff_test.R | 5 tern-0.9.6/tern/R/prune_occurrences.R | 2 tern-0.9.6/tern/R/response_biomarkers_subgroups.R | 13 tern-0.9.6/tern/R/response_subgroups.R | 159 ++ tern-0.9.6/tern/R/riskdiff.R | 35 tern-0.9.6/tern/R/summarize_ancova.R | 18 tern-0.9.6/tern/R/summarize_change.R | 12 tern-0.9.6/tern/R/summarize_colvars.R | 14 tern-0.9.6/tern/R/summarize_functions.R | 1 tern-0.9.6/tern/R/summarize_glm_count.R | 553 +++++----- tern-0.9.6/tern/R/summarize_num_patients.R | 34 tern-0.9.6/tern/R/summarize_patients_exposure_in_cols.R | 19 tern-0.9.6/tern/R/survival_biomarkers_subgroups.R | 10 tern-0.9.6/tern/R/survival_coxph_pairwise.R | 25 tern-0.9.6/tern/R/survival_duration_subgroups.R | 136 +- tern-0.9.6/tern/R/survival_time.R | 12 tern-0.9.6/tern/R/survival_timepoint.R | 12 tern-0.9.6/tern/R/utils_default_stats_formats_labels.R | 40 tern-0.9.6/tern/R/utils_rtables.R | 2 tern-0.9.6/tern/README.md | 8 tern-0.9.6/tern/build/partial.rdb |binary tern-0.9.6/tern/inst/doc/missing_values.html | 5 tern-0.9.6/tern/inst/doc/tables.Rmd | 4 tern-0.9.6/tern/inst/doc/tables.html | 24 tern-0.9.6/tern/inst/doc/tern.Rmd | 6 tern-0.9.6/tern/inst/doc/tern.html | 16 tern-0.9.6/tern/inst/doc/tern_formats.html | 11 tern-0.9.6/tern/man/abnormal.Rd | 33 tern-0.9.6/tern/man/abnormal_by_baseline.Rd | 41 tern-0.9.6/tern/man/abnormal_by_marked.Rd | 30 tern-0.9.6/tern/man/abnormal_by_worst_grade.Rd | 29 tern-0.9.6/tern/man/abnormal_by_worst_grade_worsen.Rd | 28 tern-0.9.6/tern/man/add_riskdiff.Rd | 2 tern-0.9.6/tern/man/analyze_colvars_functions.Rd | 2 tern-0.9.6/tern/man/analyze_functions.Rd | 4 tern-0.9.6/tern/man/analyze_variables.Rd | 10 tern-0.9.6/tern/man/analyze_vars_in_cols.Rd | 28 tern-0.9.6/tern/man/argument_convention.Rd | 7 tern-0.9.6/tern/man/compare_variables.Rd | 17 tern-0.9.6/tern/man/control_lineplot_vars.Rd | 8 tern-0.9.6/tern/man/control_riskdiff.Rd |only tern-0.9.6/tern/man/count_cumulative.Rd | 12 tern-0.9.6/tern/man/count_missed_doses.Rd | 16 tern-0.9.6/tern/man/count_occurrences.Rd | 17 tern-0.9.6/tern/man/count_occurrences_by_grade.Rd | 18 tern-0.9.6/tern/man/count_patients_events_in_cols.Rd | 12 tern-0.9.6/tern/man/count_patients_with_event.Rd | 9 tern-0.9.6/tern/man/count_patients_with_flags.Rd | 9 tern-0.9.6/tern/man/count_values.Rd |only tern-0.9.6/tern/man/d_count_cumulative.Rd | 2 tern-0.9.6/tern/man/d_rsp_subgroups_colvars.Rd | 2 tern-0.9.6/tern/man/default_stats_formats_labels.Rd | 14 tern-0.9.6/tern/man/estimate_multinomial_rsp.Rd | 259 ++-- tern-0.9.6/tern/man/estimate_proportion.Rd |only tern-0.9.6/tern/man/extract_rsp_subgroups.Rd | 2 tern-0.9.6/tern/man/extract_survival_subgroups.Rd | 7 tern-0.9.6/tern/man/g_lineplot.Rd | 14 tern-0.9.6/tern/man/groups_list_to_df.Rd | 2 tern-0.9.6/tern/man/h_glm_count.Rd | 47 tern-0.9.6/tern/man/h_incidence_rate.Rd | 16 tern-0.9.6/tern/man/h_ppmeans.Rd |only tern-0.9.6/tern/man/h_proportions.Rd | 2 tern-0.9.6/tern/man/h_response_subgroups.Rd | 2 tern-0.9.6/tern/man/h_survival_duration_subgroups.Rd | 7 tern-0.9.6/tern/man/incidence_rate.Rd | 85 + tern-0.9.6/tern/man/odds_ratio.Rd | 26 tern-0.9.6/tern/man/prop_diff.Rd | 8 tern-0.9.6/tern/man/prop_diff_test.Rd | 5 tern-0.9.6/tern/man/prune_occurrences.Rd | 2 tern-0.9.6/tern/man/response_biomarkers_subgroups.Rd | 8 tern-0.9.6/tern/man/response_subgroups.Rd | 38 tern-0.9.6/tern/man/summarize_ancova.Rd | 18 tern-0.9.6/tern/man/summarize_change.Rd | 12 tern-0.9.6/tern/man/summarize_colvars.Rd | 14 tern-0.9.6/tern/man/summarize_functions.Rd | 1 tern-0.9.6/tern/man/summarize_glm_count.Rd | 62 - tern-0.9.6/tern/man/summarize_num_patients.Rd | 32 tern-0.9.6/tern/man/summarize_patients_exposure_in_cols.Rd | 19 tern-0.9.6/tern/man/survival_biomarkers_subgroups.Rd | 8 tern-0.9.6/tern/man/survival_coxph_pairwise.Rd | 39 tern-0.9.6/tern/man/survival_duration_subgroups.Rd | 18 tern-0.9.6/tern/man/survival_time.Rd | 6 tern-0.9.6/tern/man/survival_timepoint.Rd | 12 tern-0.9.6/tern/tests/testthat/Rplots.pdf |binary tern-0.9.6/tern/tests/testthat/_snaps/analyze_variables.md | 152 ++ tern-0.9.6/tern/tests/testthat/_snaps/bland-altman/g_bland_altman.new.svg |only tern-0.9.6/tern/tests/testthat/_snaps/compare_variables.md | 18 tern-0.9.6/tern/tests/testthat/_snaps/decorate_grob/deco_grob_text_wrap.svg | 411 +++---- tern-0.9.6/tern/tests/testthat/_snaps/estimate_incidence_rate.md | 17 tern-0.9.6/tern/tests/testthat/_snaps/g_forest/g_forest.new.svg | 8 tern-0.9.6/tern/tests/testthat/_snaps/g_forest/g_forest_or.new.svg | 8 tern-0.9.6/tern/tests/testthat/_snaps/g_forest/g_forest_table_only.new.svg | 8 tern-0.9.6/tern/tests/testthat/_snaps/g_km/g_km_at_risk_title.new.svg |only tern-0.9.6/tern/tests/testthat/_snaps/g_km/g_km_at_risk_title.svg | 22 tern-0.9.6/tern/tests/testthat/_snaps/g_km/g_km_ci_ribbon.new.svg |only tern-0.9.6/tern/tests/testthat/_snaps/g_km/g_km_ci_ribbon.svg | 28 tern-0.9.6/tern/tests/testthat/_snaps/g_km/g_km_crop_ylim.new.svg |only tern-0.9.6/tern/tests/testthat/_snaps/g_km/g_km_crop_ylim.svg | 22 tern-0.9.6/tern/tests/testthat/_snaps/g_km/g_km_crop_ylim_failure.new.svg |only tern-0.9.6/tern/tests/testthat/_snaps/g_km/g_km_crop_ylim_failure.svg | 22 tern-0.9.6/tern/tests/testthat/_snaps/g_km/g_km_custom.new.svg |only tern-0.9.6/tern/tests/testthat/_snaps/g_km/g_km_custom.svg | 20 tern-0.9.6/tern/tests/testthat/_snaps/g_km/g_km_custom_ylim.new.svg |only tern-0.9.6/tern/tests/testthat/_snaps/g_km/g_km_custom_ylim.svg | 22 tern-0.9.6/tern/tests/testthat/_snaps/g_km/g_km_default.new.svg |only tern-0.9.6/tern/tests/testthat/_snaps/g_km/g_km_default.svg | 22 tern-0.9.6/tern/tests/testthat/_snaps/g_km/g_km_eq_lbls.new.svg |only tern-0.9.6/tern/tests/testthat/_snaps/g_km/g_km_plot_only.new.svg |only tern-0.9.6/tern/tests/testthat/_snaps/g_km/g_km_plot_only.svg | 22 tern-0.9.6/tern/tests/testthat/_snaps/g_km/g_km_ref_group_coxph.new.svg |only tern-0.9.6/tern/tests/testthat/_snaps/g_km/g_km_ref_group_coxph.svg | 22 tern-0.9.6/tern/tests/testthat/_snaps/g_km/g_km_table_only.new.svg |only tern-0.9.6/tern/tests/testthat/_snaps/g_km/g_km_title_footer.new.svg |only tern-0.9.6/tern/tests/testthat/_snaps/g_km/g_km_title_footer.svg | 22 tern-0.9.6/tern/tests/testthat/_snaps/h_incidence_rate.md |only tern-0.9.6/tern/tests/testthat/_snaps/incidence_rate.md |only tern-0.9.6/tern/tests/testthat/_snaps/response_subgroups.md | 33 tern-0.9.6/tern/tests/testthat/_snaps/survival_duration_subgroups.md | 35 tern-0.9.6/tern/tests/testthat/_snaps/utils_default_stats_formats_labels.md | 8 tern-0.9.6/tern/tests/testthat/setup.R | 1 tern-0.9.6/tern/tests/testthat/test-decorate_grob.R | 78 + tern-0.9.6/tern/tests/testthat/test-g_lineplot.R | 92 + tern-0.9.6/tern/tests/testthat/test-h_incidence_rate.R |only tern-0.9.6/tern/tests/testthat/test-incidence_rate.R |only tern-0.9.6/tern/tests/testthat/test-individual_patient_plot.R | 3 tern-0.9.6/tern/tests/testthat/test-response_subgroups.R | 67 + tern-0.9.6/tern/tests/testthat/test-survival_duration_subgroups.R | 40 tern-0.9.6/tern/tests/testthat/test-survival_time.R | 24 tern-0.9.6/tern/tests/testthat/test-utils_default_stats_formats_labels.R | 14 tern-0.9.6/tern/vignettes/tables.Rmd | 4 tern-0.9.6/tern/vignettes/tern.Rmd | 6 173 files changed, 3051 insertions(+), 1764 deletions(-)
Title: Flexible Procedures for Clustering
Description: Various methods for clustering and cluster validation.
Fixed point clustering. Linear regression clustering. Clustering by
merging Gaussian mixture components. Symmetric
and asymmetric discriminant projections for visualisation of the
separation of groupings. Cluster validation statistics
for distance based clustering including corrected Rand index.
Standardisation of cluster validation statistics by random clusterings and
comparison between many clustering methods and numbers of clusters based on
this.
Cluster-wise cluster stability assessment. Methods for estimation of
the number of clusters: Calinski-Harabasz, Tibshirani and Walther's
prediction strength, Fang and Wang's bootstrap stability.
Gaussian/multinomial mixture fitting for mixed
continuous/categorical variables. Variable-wise statistics for cluster
interpretation. DBSCAN clustering. Interface functions for many
clustering methods implemented in R, including estimating the number of
clusters with kmeans, pam and clara. Modal [...truncated...]
Author: Christian Hennig [aut, cre]
Maintainer: Christian Hennig <christian.hennig@unibo.it>
Diff between fpc versions 2.2-12 dated 2024-04-30 and 2.2-13 dated 2024-09-24
DESCRIPTION | 16 ++++++++++------ MD5 | 30 +++++++++++++++--------------- man/ancoord.Rd | 2 +- man/awcoord.Rd | 2 +- man/clustatsum.Rd | 2 +- man/cluster.stats.Rd | 6 +++--- man/cqcluster.stats.Rd | 6 +++--- man/discrete.recode.Rd | 3 ++- man/fixmahal.Rd | 4 ++-- man/kmeansCBI.Rd | 4 ++-- man/mahalanofix.Rd | 4 ++-- man/mvdcoord.Rd | 2 +- man/ncoord.Rd | 2 +- man/valstat.object.Rd | 2 +- tests/Examples/fpc-Ex.Rout.save | 12 ++++++------ tests/fpctests_notallin.Rout.save | 8 ++++---- 16 files changed, 55 insertions(+), 50 deletions(-)
Title: Superlatively Fast Fuzzy Joins
Description: Empowers users to fuzzily-merge data frames with millions or tens of millions of rows in minutes with low memory usage. The package uses the locality sensitive hashing algorithms developed by Datar, Immorlica, Indyk and Mirrokni (2004) <doi:10.1145/997817.997857>, and Broder (1998) <doi:10.1109/SEQUEN.1997.666900> to avoid having to compare every pair of records in each dataset, resulting in fuzzy-merges that finish in linear time.
Author: Beniamino Green [aut, cre, cph],
Etienne Bacher [ctb] ,
The authors of the dependency Rust crates [ctb, cph]
Maintainer: Beniamino Green <beniamino.green@yale.edu>
Diff between zoomerjoin versions 0.1.5 dated 2024-07-02 and 0.2.0 dated 2024-09-24
DESCRIPTION | 9 ++++--- MD5 | 24 +++++++++---------- NEWS.md | 2 + README.md | 51 ++++++++++++++--------------------------- inst/doc/benchmarks.Rmd | 5 ---- inst/doc/benchmarks.html | 3 -- inst/doc/guided_tour.html | 16 ++++++------ inst/doc/matching_vectors.html | 2 - src/Makevars | 5 ++-- src/Makevars.win | 5 ++-- src/rust/Cargo.toml | 1 src/rust/vendor.tar.xz |binary vignettes/benchmarks.Rmd | 5 ---- 13 files changed, 53 insertions(+), 75 deletions(-)
Title: Interface to 'MLflow'
Description: R interface to 'MLflow', open source platform for
the complete machine learning life cycle, see <https://mlflow.org/>.
This package supports installing 'MLflow', tracking experiments,
creating and running projects, and saving and serving models.
Author: Matei Zaharia [aut, cre],
Javier Luraschi [aut],
Kevin Kuo [aut] ,
RStudio [cph]
Maintainer: Matei Zaharia <matei@databricks.com>
Diff between mlflow versions 2.14.1 dated 2024-06-28 and 2.16.2 dated 2024-09-24
DESCRIPTION | 6 +++--- MD5 | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-)
Title: A Multivariate Meta-Analysis Model for High-Dimensional
Metabolomics Data
Description: Performs multivariate meta-analysis for high-dimensional metabolomics data for integrating and collectively analysing individual-level data generated from multiple studies as well as for combining summary estimates. This approach accounts for correlation between outcomes, considers variability within and between studies, handles missing values and uses shrinkage estimation to allow for high dimensionality. A detailed vignette with example datasets and code to prepare data and analyses are available on <https://bookdown.org/a2delivera/MetaHD/>.
Author: Jayamini Liyanage [aut, cre],
Alysha De Livera [aut]
Maintainer: Jayamini Liyanage <j.liyanage@latrobe.edu.au>
Diff between MetaHD versions 0.1.2 dated 2024-07-21 and 0.1.3 dated 2024-09-24
DESCRIPTION | 15 ++--- MD5 | 8 +- NAMESPACE | 1 R/MetaHD.R | 169 +++++++++++++++++++++++++++++++++++++--------------------- man/MetaHD.Rd | 19 ++++-- 5 files changed, 135 insertions(+), 77 deletions(-)
Title: Create Tables from Different Types of Regression
Description: Create regression tables from generalized linear model(GLM), generalized estimating equation(GEE), generalized linear mixed-effects model(GLMM), Cox proportional hazards model, survey-weighted generalized linear model(svyglm) and survey-weighted Cox model results for publication.
Author: Jinseob Kim [aut, cre] ,
Zarathu [cph, fnd],
Yoonkyoung Jeon [aut],
Jaehun Shon [aut],
Hyojong Myung [aut]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jstable versions 1.3.3 dated 2024-08-30 and 1.3.4 dated 2024-09-24
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/cox2.R | 5 ++--- R/forestglm.R | 49 +++++++++++++++++++++++++++++-------------------- inst/doc/jstable.html | 28 ++++++++++++++-------------- 6 files changed, 58 insertions(+), 46 deletions(-)
Title: Frequently Used Functions for Easy R Programming
Description: Some utility functions for validation, data manipulation or color palettes. These functions can be helpful to reduce internal codes everywhere in package development.
Author: Yuchen Li [aut, cre]
Maintainer: Yuchen Li <ycli1995@outlook.com>
Diff between easy.utils versions 0.0.4 dated 2024-03-19 and 0.0.5 dated 2024-09-24
DESCRIPTION | 8 ++--- MD5 | 12 +++++--- NAMESPACE | 4 ++ NEWS.md | 10 ++++++ R/check.R | 53 +++++++++++++++++++----------------- R/identical.R |only R/validation-matrix_dimensions.R |only man/identicalNoAttr.Rd |only man/validation-matrix_dimensions.Rd |only 9 files changed, 53 insertions(+), 34 deletions(-)