Title: Quick Wraps 2
Description: A collection of (wrapper) functions the creator found useful
for quickly placing data summaries and formatted regression results into
'.Rnw' or '.Rmd' files. Functions for generating commonly used graphics,
such as receiver operating curves or Bland-Altman plots, are also provided
by 'qwraps2'. 'qwraps2' is a updated version of a package 'qwraps'. The
original version 'qwraps' was never submitted to CRAN but can be found at
<https://github.com/dewittpe/qwraps/>. The implementation and limited scope
of the functions within 'qwraps2' <https://github.com/dewittpe/qwraps2/> is
fundamentally different from 'qwraps'.
Author: Peter DeWitt [aut, cre] ,
Tell Bennett [ctb]
Maintainer: Peter DeWitt <dewittpe@gmail.com>
Diff between qwraps2 versions 0.6.0 dated 2023-11-09 and 0.6.1 dated 2024-10-15
DESCRIPTION | 8 MD5 | 37 - NEWS.md | 5 R/confusion_matrix.R | 23 - R/qroc.R | 6 build/vignette.rds |binary data/mtcars2.rda |binary data/pefr.rda |binary data/spambase.rda |binary inst/doc/qwraps2-data-sets.html | 28 - inst/doc/qwraps2-formatted-summary-statistics.html | 24 - inst/doc/qwraps2-graphics.html | 426 ++++++++++----------- inst/doc/qwraps2-summary-table.html | 40 - man/confusion_matrix.Rd | 23 - man/figures |only man/stat_stepribbon.Rd | 47 +- tests/test-confusion_matrix.R | 3 tests/test-file-check.R | 2 tests/test-qable.R | 8 19 files changed, 372 insertions(+), 308 deletions(-)
Title: Tidying Methods for Mixed Models
Description: Convert fitted objects from various R mixed-model packages
into tidy data frames along the lines of the 'broom' package.
The package provides three
S3 generics for each model: tidy(), which summarizes a model's statistical findings such as
coefficients of a regression; augment(), which adds columns to the original
data such as predictions, residuals and cluster assignments; and glance(), which
provides a one-row summary of model-level statistics.
Author: Ben Bolker [aut, cre] ,
David Robinson [aut],
Dieter Menne [ctb],
Jonah Gabry [ctb],
Paul Buerkner [ctb],
Christopher Hua [ctb],
William Petry [ctb] ,
Joshua Wiley [ctb] ,
Patrick Kennedy [ctb],
Eduard Szoecs [ctb] ,
Indrajeet Patil [ctb],
Vincent Are [...truncated...]
Maintainer: Ben Bolker <bolker@mcmaster.ca>
Diff between broom.mixed versions 0.2.9.5 dated 2024-04-01 and 0.2.9.6 dated 2024-10-15
DESCRIPTION | 12 +++---- MD5 | 35 ++++++++++++---------- NAMESPACE | 6 +++ R/brms_tidiers.R | 60 +++++++++++++++++++++++++++++---------- R/glmmTMB_tidiers.R | 7 +++- R/glmm_tidiers.R |only R/lme4_tidiers.R | 2 - R/ordinal_tidiers.R |only R/rstanarm_tidiers.R | 11 +++---- build/vignette.rds |binary inst/doc/broom_mixed_intro.R | 1 inst/doc/broom_mixed_intro.html | 46 ++++++++++++++--------------- inst/doc/broom_mixed_intro.rmd | 1 man/augment.clmm.Rd |only man/brms_tidiers.Rd | 23 +++++++++----- man/rstanarm_tidiers.Rd | 2 - tests/testthat/test-alltibbles.R | 6 +++ tests/testthat/test-brms.R | 3 + tests/testthat/test-rstanarm.R | 13 ++++---- vignettes/broom_mixed_intro.rmd | 1 20 files changed, 145 insertions(+), 84 deletions(-)
Title: Applies Display Metadata to Analysis Results Datasets
Description: Creates a framework to store and apply display metadata to Analysis
Results Datasets (ARDs). The use of 'tfrmt' allows users to define table
format and styling without the data, and later apply the format to the data.
Author: Becca Krouse [aut, cre],
Christina Fillmore [aut] ,
GlaxoSmithKline Research & Development Limited [cph, fnd],
Atorus Research LLC [cph, fnd],
Ellis Hughes [aut] ,
Karima Ahmad [aut] ,
Shannon Haughton [aut]
Maintainer: Becca Krouse <becca.z.krouse@gsk.com>
Diff between tfrmt versions 0.1.2 dated 2024-07-06 and 0.1.3 dated 2024-10-15
DESCRIPTION | 8 +-- MD5 | 26 +++++----- NAMESPACE | 2 NEWS.md | 9 +++ R/apply_tfrmt.R | 4 - R/frmt_utils.R | 18 ++++++- R/mock_tbl.R | 90 ++++++++++++++++++++++++----------- README.md | 8 ++- inst/create_json_example_tfrmts.R | 6 +- inst/json_examples/tfrmt_demog.json | 9 +++ tests/testthat/_snaps/JSON.md | 36 ++++++++++++++ tests/testthat/test-JSON.R | 26 ++++++++++ tests/testthat/test-big_ns.R | 3 - tests/testthat/test-make_mock_data.R | 56 +++++++++++++++++++++ 14 files changed, 249 insertions(+), 52 deletions(-)
Title: Single-Sample Mutation-Based Pathway Analysis
Description: A systematic bioinformatics tool to perform single-sample mutation-based pathway analysis by integrating somatic mutation data with the Protein-Protein Interaction (PPI) network. In this method, we use local and global weighted strategies to evaluate the effects of network genes from mutations according to the network topology and then calculate the mutation-based pathway enrichment score (ssMutPES) to reflect the accumulated effect of mutations of each pathway. Subsequently, the ssMutPES profiles are used for unsupervised spectral clustering to identify cancer subtypes.
Author: Junwei Han [aut, cre, cph],
Yalan He [aut],
Qian Wang [aut]
Maintainer: Junwei Han <hanjunwei1981@163.com>
Diff between ssMutPA versions 0.1.1 dated 2024-10-10 and 0.1.2 dated 2024-10-15
DESCRIPTION | 6 +++--- MD5 | 15 ++++++++------- R/plot.R | 15 ++++++++++----- inst/doc/ssMutPA.R | 7 ++++++- inst/doc/ssMutPA.Rmd | 7 ++++++- inst/doc/ssMutPA.html | 17 ++++++++++++++--- man/Oncoplot.Rd | 12 ++++++++++-- man/figure |only vignettes/ssMutPA.Rmd | 7 ++++++- 9 files changed, 63 insertions(+), 23 deletions(-)
Title: Robust and Flexible Model-Based Clustering for Data Sets with
Missing Values at Random
Description: Implementations of various robust and flexible model-based clustering methods for data sets with missing values at random.
Two main models are: Multivariate Contaminated Normal Mixture (MCNM, Tong and Tortora, 2022, <doi:10.1007/s11634-021-00476-1>) and
Multivariate Generalized Hyperbolic Mixture (MGHM, Wei et al., 2019, <doi:10.1016/j.csda.2018.08.016>). Mixtures via some special or limiting
cases of the multivariate generalized hyperbolic distribution are also included: Normal-Inverse Gaussian, Symmetric Normal-Inverse Gaussian,
Skew-Cauchy, Cauchy, Skew-t, Student's t, Normal, Symmetric Generalized Hyperbolic, Hyperbolic Univariate Marginals,
Hyperbolic, and Symmetric Hyperbolic.
Author: Hung Tong [aut, cre],
Cristina Tortora [aut, ths, dgs]
Maintainer: Hung Tong <hungtongmx@gmail.com>
Diff between MixtureMissing versions 3.0.2 dated 2024-03-19 and 3.0.3 dated 2024-10-15
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/MCNM.R | 38 +++----------------------------------- R/MGHM.R | 42 +++++++----------------------------------- R/MixtureMissing.R | 4 ++-- R/utils.R | 10 +++++----- man/initialize_clusters.Rd | 5 +++++ 7 files changed, 31 insertions(+), 86 deletions(-)
More information about MixtureMissing at CRAN
Permanent link
Title: Interpreting Glucose Data from Continuous Glucose Monitors
Description: Implements a wide range of metrics for measuring glucose control and glucose variability based on continuous glucose monitoring data. The list of implemented metrics is summarized in Rodbard (2009) <doi:10.1089/dia.2009.0015>. Additional visualization tools include time-series plots, lasagna plots and ambulatory glucose profile report.
Author: Elizabeth Chun [aut],
Steve Broll [aut],
David Buchanan [aut],
John Muschelli [aut] ,
Nathaniel Fernandes [aut] ,
Jung Hoon Seo [ctb],
Johnathan Shih [ctb],
Jacek Urbanek [ctb],
John Schwenck [ctb],
Marielle Hicban [ctb],
Mary Martin [ctb],
Pratik Pa [...truncated...]
Maintainer: Irina Gaynanova <irinagn@umich.edu>
Diff between iglu versions 4.1.6 dated 2024-06-14 and 4.2.0 dated 2024-10-15
DESCRIPTION | 8 - MD5 | 89 +++++++----- NAMESPACE | 4 NEWS.md | 6 R/active_percent.R | 76 ++++++---- R/agp.R | 2 R/agp_metrics.R | 8 - R/all_metrics.R | 8 - R/gri.R | 14 + R/heatmap.R | 7 R/hyper_index.R | 2 R/hypo_index.R | 2 R/lasagna_plots.R | 4 R/m_value.R | 2 R/mage_ma_single.R | 3 R/plot_meals.R | 12 - R/sd_measures.R | 2 R/utils.R | 4 build/partial.rdb |binary build/vignette.rds |binary inst/doc/AGP_and_Episodes.html | 6 inst/doc/MAGE.Rmd | 4 inst/doc/MAGE.html | 66 ++++----- inst/doc/iglu.html | 274 +++++++++++++++++++------------------- inst/doc/lasagna_plots.html | 40 ++--- inst/shiny_iglu/server.R | 5 man/active_percent.Rd | 13 + man/agp_metrics.Rd | 4 man/gri.Rd | 6 man/hyper_index.Rd | 2 man/hypo_index.Rd | 2 man/m_value.Rd | 2 man/metrics_heatmap.Rd | 7 man/plot_lasagna.Rd | 4 man/plot_lasagna_1subject.Rd | 4 man/plot_meals.Rd | 8 - tests/testthat/test-agp.R |only tests/testthat/test-agp_metrics.R |only tests/testthat/test-cogi.R |only tests/testthat/test-ea1c.R |only tests/testthat/test-gmi.R |only tests/testthat/test-grade.R |only tests/testthat/test-grade_eugly.R |only tests/testthat/test-grade_hyper.R |only tests/testthat/test-grade_hypo.R |only tests/testthat/test-hbgi.R |only tests/testthat/test-hyper_index.R |only tests/testthat/test-hypo_index.R |only tests/testthat/test-igc.R |only tests/testthat/test-m_value.R |only tests/testthat/test-mad_glu.R |only tests/testthat/test-modd.R |only tests/testthat/test-range_glu.R |only vignettes/MAGE.Rmd | 4 54 files changed, 392 insertions(+), 312 deletions(-)
Title: 'Coroutines' for R
Description: Provides 'coroutines' for R, a family of functions that can
be suspended and resumed later on. This includes 'async' functions
(which await) and generators (which yield). 'Async' functions are
based on the concurrency framework of the 'promises' package.
Generators are based on a dependency free iteration protocol defined
in 'coro' and are compatible with iterators from the 'reticulate'
package.
Author: Lionel Henry [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Lionel Henry <lionel@posit.co>
Diff between coro versions 1.0.4 dated 2024-10-02 and 1.0.5 dated 2024-10-15
DESCRIPTION | 12 MD5 | 26 - NEWS.md | 8 R/async.R | 2 R/generator.R | 2 README.md | 77 ++- inst/doc/generator.html | 667 ++++++++++++++++++++++------------ man/async.Rd | 2 tests/testthat/_snaps/parser-block.md | 110 ----- tests/testthat/helper-flowery.R | 15 tests/testthat/test-async.R | 11 tests/testthat/test-generator.R | 13 tests/testthat/test-parser-block.R | 4 tests/testthat/test-parser-if.R | 1 14 files changed, 551 insertions(+), 399 deletions(-)
Title: CFO-Type Designs in Phase I/II Clinical Trials
Description: In phase I clinical trials, the primary objective is to ascertain the maximum tolerated dose (MTD) corresponding to a specified target toxicity rate. The subsequent phase II trials are designed to examine the potential efficacy of the drug based on the MTD obtained from the phase I trials, with the aim of identifying the optimal biological dose (OBD). The 'CFO' package facilitates the implementation of dose-finding trials by utilizing calibration-free odds type (CFO-type) designs. Specifically, it encompasses the calibration-free odds (CFO) (Jin and Yin (2022) <doi:10.1177/09622802221079353>), randomized CFO (rCFO), two-dimensional CFO (2dCFO) (Wang et al. (2023) <doi:10.3389/fonc.2023.1294258>), time-to-event CFO (TITE-CFO) (Jin and Yin (2023) <doi:10.1002/pst.2304>), fractional CFO (fCFO), accumulative CFO (aCFO), TITE-aCFO, and f-aCFO designs (Fang and Yin (2024) <doi: 10.1002/sim.10127>). It supports phase I/II trials for the CFO design and only phase I tria [...truncated...]
Author: Jialu Fang [aut, cre],
Ninghao Zhang [aut],
Wenliang Wang [aut],
Guosheng Yin [aut]
Maintainer: Jialu Fang <u3008682@connect.hku.hk>
Diff between CFO versions 2.0.0 dated 2024-09-10 and 2.1.0 dated 2024-10-15
DESCRIPTION | 15 + MD5 | 78 +++++----- NAMESPACE | 6 R/CFO.next.R | 49 +++--- R/CFO.oc.R | 17 +- R/CFO.selectmtd.R | 2 R/CFO.simu.R | 56 +++++-- R/CFO2d.next.R | 59 +++++-- R/CFO2d.oc.R | 27 ++- R/CFO2d.selectmtd.R | 2 R/CFO2d.simu.R | 40 +++-- R/CFOeff.next.R | 85 +++++------ R/CFOeff.oc.R | 370 ++++++++++++++++++++++++------------------------ R/CFOeff.selectobd.R |only R/CFOeff.simu.R | 26 ++- R/aCFO.next.R | 25 ++- R/gammatable.R |only R/lateonset.next.R | 47 ++++-- R/lateonset.simu.R | 19 +- R/plot.cfo.R | 39 ++++- R/print.cfo.R | 10 - R/rCFO.next.R |only R/summury.cfo.R | 125 +++++++++++----- man/CFO.next.Rd | 9 - man/CFO.oc.Rd | 13 + man/CFO.selectmtd.Rd | 2 man/CFO.simu.Rd | 25 ++- man/CFO2d.next.Rd | 16 +- man/CFO2d.oc.Rd | 2 man/CFO2d.selectmtd.Rd | 2 man/CFO2d.simu.Rd | 6 man/CFOeff.next.Rd | 28 +-- man/CFOeff.oc.Rd | 6 man/CFOeff.selectobd.Rd |only man/CFOeff.simu.Rd | 4 man/aCFO.next.Rd | 7 man/gammatable.Rd |only man/lateonset.next.Rd | 24 +-- man/lateonset.simu.Rd | 6 man/plot.cfo.Rd | 6 man/print.cfo.Rd | 10 - man/rCFO.next.Rd |only man/summary.cfo.Rd | 10 - 43 files changed, 784 insertions(+), 489 deletions(-)
Title: River Network Distance Computation and Applications
Description: Reads river network shape files and computes network distances.
Also included are a variety of computation and graphical tools designed
for fisheries telemetry research, such as minimum home range, kernel density
estimation, and clustering analysis using empirical k-functions with
a bootstrap envelope. Tools are also provided for editing the river
networks, meaning there is no reliance on external software.
Author: Matt Tyers [aut, cre]
Maintainer: Matt Tyers <matttyersstat@gmail.com>
Diff between riverdist versions 0.16.3 dated 2024-01-11 and 0.17.0 dated 2024-10-15
DESCRIPTION | 10 +- MD5 | 36 +++++---- NAMESPACE | 2 NEWS.md | 14 +++ R/plotdensity.R | 148 +++++++++++++++++++++++++++++++++++---- R/riverdist_1.R | 57 +++++++++++++-- README.md | 4 - build/vignette.rds |binary inst/doc/riverdist_vignette.R | 6 + inst/doc/riverdist_vignette.Rmd | 11 ++ inst/doc/riverdist_vignette.html | 87 ++++++++++++---------- man/densityanomaly.Rd |only man/makeriverdensity.Rd | 2 man/plot.riverdensity.Rd | 16 ++-- man/pointshp2segvert.Rd | 6 + man/riverdist-package.Rd | 4 - man/segvert2xy.Rd |only man/xy2segvert.Rd | 6 + tests/testthat/test_riverdist.R | 12 ++- vignettes/riverdist_vignette.Rmd | 11 ++ 20 files changed, 336 insertions(+), 96 deletions(-)
Title: Graphical Interaction Models
Description: Provides the following types of models: Models for contingency
tables (i.e. log-linear models) Graphical Gaussian models for multivariate
normal data (i.e. covariance selection models) Mixed interaction models.
Documentation about 'gRim' is provided by vignettes included in this
package and the book by Højsgaard, Edwards and Lauritzen (2012,
<doi:10.1007/978-1-4614-2299-0>); see 'citation("gRim")' for details.
Author: Soeren Hoejsgaard [aut, cre]
Maintainer: Soeren Hoejsgaard <sorenh@math.aau.dk>
Diff between gRim versions 0.3.3 dated 2024-07-19 and 0.3.4 dated 2024-10-15
DESCRIPTION | 14 +++++++++----- MD5 | 30 +++++++++++++++--------------- NAMESPACE | 10 ++++------ R/NAMESPACE.R | 6 +++--- R/citest_array.R | 4 ++-- R/imodel_update.R | 2 +- R/loglin_dim.R | 6 +++--- R/mi_dimension.R | 6 +++--- R/mi_fit.R | 8 ++++---- R/mi_parm_conversion.R | 16 ++++++++-------- R/mi_weakdata.R | 8 ++++---- R/mi_weakmodel.R | 4 ++-- R/models_grips.R | 4 ++-- R/test_single_edges.R | 2 +- build/vignette.rds |binary inst/doc/grim.html | 43 +++++++++++++++++++++---------------------- 16 files changed, 82 insertions(+), 81 deletions(-)
Title: Functions for Wayne W. Daniel's Biostatistics, Tenth Edition
Description: Functions to accompany Wayne W. Daniel's Biostatistics: A
Foundation for Analysis in the Health Sciences, Tenth Edition.
Author: Tingting Zhan [aut, cre, cph]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between DanielBiostatistics10th versions 0.2.5 dated 2024-10-05 and 0.2.6 dated 2024-10-15
DESCRIPTION | 16 ++++++++-------- MD5 | 10 +++++----- NAMESPACE | 2 ++ R/Gosset_Welch.R | 33 +++++++++++++++++---------------- R/binTab.R | 25 +++++++++++++++++++------ man/Gosset_Welch.Rd | 31 ++++++++++++++++--------------- 6 files changed, 67 insertions(+), 50 deletions(-)
More information about DanielBiostatistics10th at CRAN
Permanent link
Title: R Bindings to the Calendaring Functionality of 'QuantLib'
Description: 'QuantLib' bindings are provided for R using 'Rcpp' via an evolved version
of the initial header-only 'Quantuccia' project offering an subset of 'QuantLib' (now
maintained separately just for the calendaring subset). See the included file 'AUTHORS'
for a full list of contributors to 'QuantLib' (and hence also 'Quantuccia').
Author: Dirk Eddelbuettel [aut, cre] ,
QuantLib Authors [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between qlcal versions 0.0.12 dated 2024-07-23 and 0.0.13 dated 2024-10-15
qlcal-0.0.12/qlcal/src/ql/optional.cpp |only qlcal-0.0.13/qlcal/ChangeLog | 17 ++++++ qlcal-0.0.13/qlcal/DESCRIPTION | 16 +++-- qlcal-0.0.13/qlcal/MD5 | 39 ++++++------- qlcal-0.0.13/qlcal/README.md | 2 qlcal-0.0.13/qlcal/build/partial.rdb |binary qlcal-0.0.13/qlcal/inst/NEWS.Rd | 7 ++ qlcal-0.0.13/qlcal/src/Makevars.in | 1 qlcal-0.0.13/qlcal/src/Makevars.win.in | 1 qlcal-0.0.13/qlcal/src/ql/errors.cpp | 2 qlcal-0.0.13/qlcal/src/ql/optional.hpp | 10 --- qlcal-0.0.13/qlcal/src/ql/patterns/observable.hpp | 4 - qlcal-0.0.13/qlcal/src/ql/patterns/singleton.hpp | 16 ----- qlcal-0.0.13/qlcal/src/ql/shared_ptr.hpp | 6 -- qlcal-0.0.13/qlcal/src/ql/time/calendar.hpp | 16 +++++ qlcal-0.0.13/qlcal/src/ql/time/calendars/poland.cpp | 34 ++++++++++-- qlcal-0.0.13/qlcal/src/ql/time/calendars/poland.hpp | 16 ++++- qlcal-0.0.13/qlcal/src/ql/time/calendars/southkorea.cpp | 1 qlcal-0.0.13/qlcal/src/ql/time/date.hpp | 32 ++++------- qlcal-0.0.13/qlcal/src/ql/utilities/dataformatters.cpp | 6 -- qlcal-0.0.13/qlcal/src/ql/utilities/null.hpp | 45 ++++++---------- 21 files changed, 151 insertions(+), 120 deletions(-)
Title: Pubmed Unified REtrieval for Multi-Output Exploration
Description: Access a variety of 'PubMed' data through a single, user-friendly interface, including abstracts <https://pubmed.ncbi.nlm.nih.gov/>, bibliometrics from 'iCite' <https://icite.od.nih.gov/>, pubtations from 'PubTator3' <https://www.ncbi.nlm.nih.gov/research/pubtator3/>, and full-text records from 'PMC' <https://www.ncbi.nlm.nih.gov/pmc/>.
Author: Jason Timm [aut, cre]
Maintainer: Jason Timm <JaTimm@salud.unm.edu>
Diff between puremoe versions 1.0.1 dated 2024-05-13 and 1.0.2 dated 2024-10-15
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NAMESPACE | 3 ++- NEWS.md | 8 ++++++++ R/data_pmc_list.R | 18 ++++++++++++------ R/get_records.R | 2 +- R/source_pubtations.R | 2 ++ README.md | 34 ++++++++++++++++++---------------- man/data_pmc_list.Rd | 8 ++++++-- man/get_records.Rd | 2 +- 10 files changed, 63 insertions(+), 40 deletions(-)
Title: Maximum Likelihood Estimation of Multiple Membership Mixed
Models Used in Value-Added Modeling
Description: An EM algorithm, Karl et al. (2013) <doi:10.1016/j.csda.2012.10.004>, is used to estimate the generalized, variable, and complete persistence models, Mariano et al. (2010) <doi:10.3102/1076998609346967>. These are multiple-membership linear mixed models with teachers modeled as "G-side" effects and students modeled with either "G-side" or "R-side" effects.
Author: Andrew Karl [cre, aut] ,
Yan Yang [aut],
Sharon Lohr [aut]
Maintainer: Andrew Karl <akarl@asu.edu>
Diff between GPvam versions 3.1-0 dated 2024-04-05 and 3.1-1 dated 2024-10-15
DESCRIPTION | 10 +++++----- MD5 | 20 +++++++++++--------- NAMESPACE | 30 +++++++++++++++++++++++------- NEWS | 3 +++ R/GP.un.R | 16 +++++++++++++++- R/GPvam.R | 12 +++++++----- R/VP.CP.ZP.un.r | 17 ++++++++++++++++- R/bias.test.custom.R |only R/print.GPvam.R | 2 +- R/rGP.un.R | 16 +++++++++++++++- man/GPvam-package.Rd | 6 ++++-- man/bias.test.custom.Rd |only 12 files changed, 100 insertions(+), 32 deletions(-)
Title: Black-Box Optimization Toolkit
Description: Features highly configurable search spaces via the 'paradox'
package and optimizes every user-defined objective function. The
package includes several optimization algorithms e.g. Random Search,
Iterated Racing, Bayesian Optimization (in 'mlr3mbo') and Hyperband
(in 'mlr3hyperband'). bbotk is the base package of 'mlr3tuning',
'mlr3fselect' and 'miesmuschel'.
Author: Marc Becker [cre, aut] ,
Jakob Richter [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
Martin Binder [aut],
Olaf Mersmann [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between bbotk versions 1.1.0 dated 2024-09-09 and 1.1.1 dated 2024-10-15
DESCRIPTION | 6 ++--- MD5 | 20 +++++++++--------- NEWS.md | 2 + R/OptimInstance.R | 4 ++- R/Optimizer.R | 15 ++++++------- build/partial.rdb |binary man/OptimInstance.Rd | 5 +++- tests/testthat/helper.R | 1 tests/testthat/test_ArchiveAsync.R | 2 - tests/testthat/test_OptimInstanceAsyncSingleCrit.R | 4 +-- tests/testthat/test_TerminatorStagnationHypervolume.R | 2 + 11 files changed, 34 insertions(+), 27 deletions(-)
Title: eXtensible Time Series
Description: Provide for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user level customization and extension, while simplifying cross-class interoperability.
Author: Jeffrey A. Ryan [aut, cph],
Joshua M. Ulrich [cre, aut],
Ross Bennett [ctb],
Corwin Joy [ctb]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>
Diff between xts versions 0.14.0 dated 2024-06-05 and 0.14.1 dated 2024-10-15
DESCRIPTION | 6 +-- MD5 | 55 +++++++++++++++---------------- NEWS.md | 19 ++++++++++ R/lag.xts.R | 2 - R/merge.R | 4 +- R/plot.R | 37 +++++++++----------- R/print.R | 2 - R/split.R | 9 ++--- R/tclass.R | 2 - R/tformat.R | 2 - R/tzone.R | 4 +- R/xts.R | 4 +- build/vignette.rds |binary inst/doc/xts-faq.pdf |binary inst/doc/xts.pdf |binary inst/tinytest/test-merge.R | 9 +++++ inst/tinytest/test-reclass.R | 6 +++ man/as.xts.Rd | 2 - man/diff.xts.Rd | 2 - man/merge.xts.Rd | 4 +- man/print.xts.Rd | 2 - man/split.xts.Rd | 9 ++--- man/tclass.Rd | 2 - man/tformat.Rd | 2 - man/tzone.Rd | 2 - man/xts.Rd | 2 - src/merge.c | 76 ++++++++++++++++++++----------------------- src/tryXts.c | 12 +++--- src/xts.c |only 29 files changed, 153 insertions(+), 123 deletions(-)
Title: Typed Parameter Tags for Integration with 'roxygen2'
Description: Provides typed parameter documentation tags for integration
with 'roxygen2'. Typed parameter tags provide a consistent interface for
annotating expected types for parameters and returned values. Tools for
converting from existing styles are also provided to easily adapt projects
which implement typed documentation by convention rather than tag. Use the
default format or provide your own.
Author: Doug Kelkhoff [aut, cre]
Maintainer: Doug Kelkhoff <doug.kelkhoff@gmail.com>
Diff between roxytypes versions 0.1.1 dated 2024-09-20 and 0.1.2 dated 2024-10-15
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/tag_typed.R | 2 +- R/tag_typedreturn.R | 2 +- 5 files changed, 15 insertions(+), 10 deletions(-)
Title: Utilities for Certara's Nonlinear Mixed-Effects Modeling Engine
Description: Perform Nonlinear Mixed-Effects (NLME) Modeling using Certara's
NLME-Engine. Access the same Maximum Likelihood engines used in the Phoenix
platform, including algorithms for parametric methods, individual, and pooled
data analysis <https://www.certara.com/app/uploads/2020/06/BR_PhoenixNLME-v4.pdf>.
The Quasi-Random Parametric Expectation-Maximization Method (QRPEM) is also
supported <https://www.page-meeting.org/default.asp?abstract=2338>. Execution
is supported both locally or on remote machines. Remote execution includes
support for Linux Sun Grid Engine (SGE), Terascale Open-source Resource and
Queue Manager (TORQUE) grids, Linux and Windows multicore, and individual runs.
Author: Soltanshahi Fred [aut],
Michael Tomashevskiy [aut],
James Craig [aut, cre],
Shuhua Hu [ctb],
Certara USA, Inc. [cph, fnd]
Maintainer: James Craig <james.craig@certara.com>
Diff between Certara.NLME8 versions 1.2.4 dated 2023-06-15 and 3.0.1 dated 2024-10-15
DESCRIPTION | 8 MD5 | 68 +++--- R/UpdateMDLfrom_dmptxt.R | 115 +++++++---- R/checkHostParams.R | 335 +++++++++++++++++++-------------- R/collateTables.R | 15 - R/collectJobResultsGeneric.R | 11 + R/copy_InputFiles.R | 3 R/generateEtaSpreadsheet.R | 20 + R/generateGenericTable.R | 46 ++-- R/generateJobResults.R | 2 R/generateNLMEScriptAndRun.R | 6 R/generateNonparamSummary.R | 14 - R/generateResiduals.R | 17 - R/generateSecondary.R | 179 ++++++----------- R/generateThetaCovCorFiles.R | 16 - R/get_VIFs.R | 76 +++---- R/multiCoreGeneric.R | 2 R/parallel_utl.r | 96 +++++++-- R/parse_outputFile.R | 2 R/performEstimationOnSortColumns.R | 1 R/performParallelNLMERun.R | 10 R/performProfileEstimation.R | 1 R/readEtaCovTxtFile.R | 6 R/readStrCovTxtFile.R | 4 R/runNLMEGenericSample.R | 4 R/runNLMESample.R | 20 - R/sortByColumnAndGenerateControlFile.R | 120 +++++++++-- R/summarizeProfileEstimation.R | 101 +++++---- R/summarizeSimpleEstimation.R | 14 - R/updateInitialStatus.R | 2 man/UpdateMDLfrom_dmptxt.Rd | 34 ++- man/checkLicenseFile.Rd | 20 + man/getTableNames.Rd | 19 + man/performParallelNLMERun.Rd | 4 tests/testthat/test_VPC.r | 4 35 files changed, 803 insertions(+), 592 deletions(-)
Title: Robust Trimmed Clustering
Description: Provides functions for robust trimmed clustering. The methods are
described in Garcia-Escudero (2008) <doi:10.1214/07-AOS515>,
Fritz et al. (2012) <doi:10.18637/jss.v047.i12>,
Garcia-Escudero et al. (2011) <doi:10.1007/s11222-010-9194-z> and others.
Author: Valentin Todorov [aut, cre] ,
Luis Angel Garcia Escudero [aut],
Agustin Mayo Iscar [aut],
Javier Crespo Guerrero [aut],
Heinrich Fritz [aut]
Maintainer: Valentin Todorov <valentin.todorov@chello.at>
Diff between tclust versions 2.0-4 dated 2024-05-09 and 2.0-5 dated 2024-10-15
tclust-2.0-4/tclust/data/LG5data.RData |only tclust-2.0-4/tclust/data/M5data.RData |only tclust-2.0-5/tclust/ChangeLog | 13 +++++ tclust-2.0-5/tclust/DESCRIPTION | 12 ++-- tclust-2.0-5/tclust/MD5 | 38 ++++++++------- tclust-2.0-5/tclust/NAMESPACE | 9 +++ tclust-2.0-5/tclust/R/DiscrFact.R | 2 tclust-2.0-5/tclust/R/ctlcurves.R | 8 ++- tclust-2.0-5/tclust/R/data.R | 29 +++++++++++ tclust-2.0-5/tclust/R/print.tclust.R | 4 + tclust-2.0-5/tclust/R/tclust.R | 73 ++++++++++++++++++++++++++---- tclust-2.0-5/tclust/R/tclustIC.R |only tclust-2.0-5/tclust/R/tkmeans.R | 5 +- tclust-2.0-5/tclust/data/LG5data.rda |only tclust-2.0-5/tclust/data/flea.rda |only tclust-2.0-5/tclust/data/wholesale.rda |binary tclust-2.0-5/tclust/man/ctlcurves.Rd | 2 tclust-2.0-5/tclust/man/flea.Rd |only tclust-2.0-5/tclust/man/plot.ctlcurves.Rd | 3 + tclust-2.0-5/tclust/man/plot.tclustIC.Rd |only tclust-2.0-5/tclust/man/tclust.Rd | 16 +++++- tclust-2.0-5/tclust/man/tclustIC.Rd |only tclust-2.0-5/tclust/src/tclust.cpp | 41 +++++++++------- tclust-2.0-5/tclust/src/tclust_types.h | 2 24 files changed, 201 insertions(+), 56 deletions(-)
Title: Starter Kit for New Projects
Description: Get started with new projects by dropping a skeleton of a new
project into a new or existing directory, initialise git repositories,
and create reproducible environments with the 'renv' package. The
package allows for dynamically named files, folders, file content, as
well as the functionality to drop individual template files into
existing projects.
Author: Daniel D. Sjoberg [aut, cre] ,
Emily Vertosick [ctb]
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between starter versions 0.1.15 dated 2024-03-05 and 0.1.16 dated 2024-10-15
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS.md | 4 ++++ R/create_symlink.R | 20 ++++++++------------ README.md | 6 +++--- build/vignette.rds |binary inst/doc/create_project.R | 26 +++++++++++++------------- inst/doc/create_project.Rmd | 26 +++++++++++++------------- inst/doc/create_project.html | 16 ++++++++-------- man/create_symlink.Rd | 21 ++++++++------------- vignettes/create_project.Rmd | 26 +++++++++++++------------- 11 files changed, 84 insertions(+), 89 deletions(-)
Title: Feature Selection for 'mlr3'
Description: Feature selection package of the 'mlr3' ecosystem. It selects
the optimal feature set for any 'mlr3' learner. The package works with
several optimization algorithms e.g. Random Search, Recursive Feature
Elimination, and Genetic Search. Moreover, it can automatically
optimize learners and estimate the performance of optimized feature
sets with nested resampling.
Author: Marc Becker [aut, cre] ,
Patrick Schratz [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
John Zobolas [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3fselect versions 1.1.0 dated 2024-09-09 and 1.1.1 dated 2024-10-15
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/FSelectInstanceBatchMultiCrit.R | 4 +++- R/FSelectInstanceBatchSingleCrit.R | 4 +++- build/partial.rdb |binary man/FSelectInstanceBatchMultiCrit.Rd | 5 ++++- man/FSelectInstanceBatchSingleCrit.Rd | 5 ++++- 8 files changed, 28 insertions(+), 14 deletions(-)
Title: Helper Functions for Linear Model Analysis
Description: A collection of helper functions for multiple
regression models fitted by lm(). Most of them are simple
functions for simple tasks which can be done with coding,
but may not be easy for occasional users of R. Most of
the tasks addressed are those sometimes needed when
using the 'manymome' package (Cheung and Cheung, 2023,
<doi:10.3758/s13428-023-02224-z>) and 'stdmod' package
(Cheung, Cheung, Lau, Hui, and Vong, 2022,
<doi:10.1037/hea0001188>). However, they can also be used
in other scenarios.
Author: Shu Fai Cheung [aut, cre]
Maintainer: Shu Fai Cheung <shufai.cheung@gmail.com>
Diff between lmhelprs versions 0.3.0 dated 2024-02-18 and 0.4.0 dated 2024-10-15
DESCRIPTION | 10 MD5 | 26 +- NAMESPACE | 1 NEWS.md | 26 ++ R/hierarchical_lm_check.R | 20 - R/many_lm.R | 347 ++++++++++++++++++------------ R/many_lm_to_partable.R |only R/summary_lm_list_helprs.R | 19 + README.md | 2 build/vignette.rds |binary inst/doc/lmhelprs.html | 216 +++++++++--------- inst/tinytest/test_hierarchical_lm_drop.R |only inst/tinytest/test_semPlotModel.R |only inst/tinytest/test_test_many_lm.R | 163 ++++++++------ man/lm_list_to_partable.Rd |only man/many_lm.Rd | 23 + 16 files changed, 526 insertions(+), 327 deletions(-)
Title: Individual Based Model Population Simulation
Description: Simulation of the random evolution of heterogeneous populations using stochastic Individual-Based Models (IBMs) <doi:10.48550/arXiv.2303.06183>.
The package enables users to simulate population evolution, in which individuals are characterized by their age and some characteristics, and the population is modified by different types of events, including births/arrivals, death/exit events, or changes of characteristics. The frequency at which an event can occur to an individual can depend on their age and characteristics, but also on the characteristics of other individuals (interactions).
Such models have a wide range of applications. For instance, IBMs can be used for simulating the evolution of a heterogeneous insurance portfolio with selection or for validating mortality forecasts.
This package overcomes the limitations of time-consuming IBMs simulations by implementing new efficient algorithms based on thinning methods, which are compiled using the 'Rcpp' package while provid [...truncated...]
Author: Daphne Giorgi [aut, cre],
Sarah Kaakai [aut],
Vincent Lemaire [aut]
Maintainer: Daphne Giorgi <daphne.giorgi@sorbonne-universite.fr>
Diff between IBMPopSim versions 1.0.0 dated 2024-02-08 and 1.1.0 dated 2024-10-15
IBMPopSim-1.0.0/IBMPopSim/R/roxygen_description.R |only IBMPopSim-1.1.0/IBMPopSim/DESCRIPTION | 10 IBMPopSim-1.1.0/IBMPopSim/MD5 | 123 +++++---- IBMPopSim-1.1.0/IBMPopSim/NEWS.md | 11 IBMPopSim-1.1.0/IBMPopSim/R/IBMPopSim-package.R |only IBMPopSim-1.1.0/IBMPopSim/R/mkcpp_from_template.R | 9 IBMPopSim-1.1.0/IBMPopSim/R/pyramid.R | 2 IBMPopSim-1.1.0/IBMPopSim/build/partial.rdb |only IBMPopSim-1.1.0/IBMPopSim/build/vignette.rds |binary IBMPopSim-1.1.0/IBMPopSim/inst/doc/IBMPopSim.Rmd | 67 ++--- IBMPopSim-1.1.0/IBMPopSim/inst/doc/IBMPopSim.pdf |binary IBMPopSim-1.1.0/IBMPopSim/inst/doc/IBMPopSim_cpp.Rmd | 10 IBMPopSim-1.1.0/IBMPopSim/inst/doc/IBMPopSim_cpp.pdf |binary IBMPopSim-1.1.0/IBMPopSim/inst/doc/IBMPopSim_human_pop.Rmd | 99 +++---- IBMPopSim-1.1.0/IBMPopSim/inst/doc/IBMPopSim_human_pop.pdf |binary IBMPopSim-1.1.0/IBMPopSim/inst/doc/IBMPopSim_human_pop_IMD.R | 3 IBMPopSim-1.1.0/IBMPopSim/inst/doc/IBMPopSim_human_pop_IMD.Rmd | 127 ++++++---- IBMPopSim-1.1.0/IBMPopSim/inst/doc/IBMPopSim_human_pop_IMD.pdf |binary IBMPopSim-1.1.0/IBMPopSim/inst/doc/IBMPopSim_insurance_portfolio.Rmd | 50 +-- IBMPopSim-1.1.0/IBMPopSim/inst/doc/IBMPopSim_insurance_portfolio.pdf |binary IBMPopSim-1.1.0/IBMPopSim/inst/doc/IBMPopSim_interaction.Rmd | 98 +++---- IBMPopSim-1.1.0/IBMPopSim/inst/doc/IBMPopSim_interaction.pdf |binary IBMPopSim-1.1.0/IBMPopSim/inst/include/event_full_interaction_template.cpp | 6 IBMPopSim-1.1.0/IBMPopSim/inst/include/event_individual_template.cpp | 4 IBMPopSim-1.1.0/IBMPopSim/inst/include/event_inhomogeneous_poisson_template.cpp | 2 IBMPopSim-1.1.0/IBMPopSim/inst/include/event_poisson_template.cpp | 2 IBMPopSim-1.1.0/IBMPopSim/inst/include/event_random_interaction_template.cpp | 6 IBMPopSim-1.1.0/IBMPopSim/inst/include/popsim_algorithm.hpp | 4 IBMPopSim-1.1.0/IBMPopSim/inst/include/popsim_template.cpp | 4 IBMPopSim-1.1.0/IBMPopSim/man/IBMPopSim-package.Rd |only IBMPopSim-1.1.0/IBMPopSim/vignettes/IBMPopSim.Rmd | 67 ++--- IBMPopSim-1.1.0/IBMPopSim/vignettes/IBMPopSim_cpp.Rmd | 10 IBMPopSim-1.1.0/IBMPopSim/vignettes/IBMPopSim_human_pop.Rmd | 99 +++---- IBMPopSim-1.1.0/IBMPopSim/vignettes/IBMPopSim_human_pop_IMD.Rmd | 127 ++++++---- IBMPopSim-1.1.0/IBMPopSim/vignettes/IBMPopSim_human_pop_IMD.Rmd.orig | 2 IBMPopSim-1.1.0/IBMPopSim/vignettes/IBMPopSim_insurance_portfolio.Rmd | 50 +-- IBMPopSim-1.1.0/IBMPopSim/vignettes/IBMPopSim_insurance_portfolio.Rmd.orig | 3 IBMPopSim-1.1.0/IBMPopSim/vignettes/IBMPopSim_interaction.Rmd | 98 +++---- IBMPopSim-1.1.0/IBMPopSim/vignettes/hpIMD_birth_intensities-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/hpIMD_compo_fem-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/hpIMD_compo_fem2-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/hpIMD_compo_fem2-2.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/hpIMD_death_rate-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/hpIMD_df-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/hpIMD_pyramids-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/hpIMD_pyramids-2.png |only IBMPopSim-1.1.0/IBMPopSim/vignettes/hp_birth_distrib-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/hp_death_rate_1-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/hp_pop_init-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/hp_pop_init_1e6-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/hp_pyramid_50-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/hp_pyramids-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/hp_pyramids2-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/insur_LeeCarter_risk1-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/insur_cohort-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/insur_evol_mortality-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/insur_mortality_rates-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/insur_pyr_group-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/insur_pyramid-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/inter_output-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/inter_output2-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/inter_output3-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/inter_pyramid-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/interaction_test.R |only IBMPopSim-1.1.0/IBMPopSim/vignettes/main_plot_30-1.png |binary IBMPopSim-1.1.0/IBMPopSim/vignettes/test.R |only 66 files changed, 597 insertions(+), 496 deletions(-)
Title: False Discovery Exceedance Controlling Multiple Testing
Procedures
Description: Multiple testing procedures for heterogeneous and discrete tests as
described in Döhler and Roquain (2020) <doi:10.1214/20-EJS1771>. The main
algorithms of the paper are available as continuous, discrete and weighted
versions. They take as input the results of a test procedure from package
'DiscreteTests', or a set of observed p-values and their discrete support
under their nulls. A shortcut function to obtain such p-values and supports
is also provided, along with wrappers allowing to apply discrete procedures
directly to data.
Author: Sebastian Doehler [aut],
Florian Junge [aut, cre],
Etienne Roquain [ctb]
Maintainer: Florian Junge <florian.junge@h-da.de>
Diff between FDX versions 1.0.6 dated 2022-10-18 and 2.0.0 dated 2024-10-15
FDX-1.0.6/FDX/R/FDX.R |only FDX-1.0.6/FDX/R/amnesia.R |only FDX-1.0.6/FDX/data |only FDX-1.0.6/FDX/man/amnesia.Rd |only FDX-1.0.6/FDX/src/kernel_fun.cpp |only FDX-2.0.0/FDX/DESCRIPTION | 38 +- FDX-2.0.0/FDX/MD5 | 103 +++--- FDX-2.0.0/FDX/NAMESPACE | 40 ++ FDX-2.0.0/FDX/NEWS.md | 67 +++- FDX-2.0.0/FDX/R/DGR_fun.R |only FDX-2.0.0/FDX/R/DLR_fun.R |only FDX-2.0.0/FDX/R/DPB_fun.R |only FDX-2.0.0/FDX/R/FDX-package.R |only FDX-2.0.0/FDX/R/NDGR_fun.R |only FDX-2.0.0/FDX/R/NDLR_fun.R |only FDX-2.0.0/FDX/R/NDPB_fun.R |only FDX-2.0.0/FDX/R/RcppExports.R | 237 +++++++------- FDX-2.0.0/FDX/R/continuousGR.R | 296 +++++++++--------- FDX-2.0.0/FDX/R/continuousLR.R | 294 +++++++++-------- FDX-2.0.0/FDX/R/discreteGR_fun.R | 390 ++++++++++++++--------- FDX-2.0.0/FDX/R/discreteLR_fun.R | 486 ++++++++++++++++------------- FDX-2.0.0/FDX/R/discretePB_fun.R | 450 +++++++++++++++++---------- FDX-2.0.0/FDX/R/fast_discrete.R | 468 +++++++++++++++++++++------- FDX-2.0.0/FDX/R/internal.R |only FDX-2.0.0/FDX/R/plot_funs.R | 573 +++++++++++++++++++++++------------ FDX-2.0.0/FDX/R/print_fun.R | 162 +++++---- FDX-2.0.0/FDX/R/summary_funs.R | 242 ++++++++------ FDX-2.0.0/FDX/R/weightedGR_fun.R | 369 +++++++++++----------- FDX-2.0.0/FDX/R/weightedLR_fun.R | 348 ++++++++++----------- FDX-2.0.0/FDX/R/weightedPB_fun.R | 361 ++++++++++------------ FDX-2.0.0/FDX/build |only FDX-2.0.0/FDX/man/DGR.Rd |only FDX-2.0.0/FDX/man/DLR.Rd |only FDX-2.0.0/FDX/man/DPB.Rd |only FDX-2.0.0/FDX/man/FDX-package.Rd | 74 +++- FDX-2.0.0/FDX/man/NDGR.Rd |only FDX-2.0.0/FDX/man/NDLR.Rd |only FDX-2.0.0/FDX/man/NDPB.Rd |only FDX-2.0.0/FDX/man/continuous.GR.Rd | 102 ++++-- FDX-2.0.0/FDX/man/continuous.LR.Rd | 101 ++++-- FDX-2.0.0/FDX/man/direct.discrete.Rd |only FDX-2.0.0/FDX/man/discrete.GR.Rd | 131 ++++---- FDX-2.0.0/FDX/man/discrete.LR.Rd | 168 +++++----- FDX-2.0.0/FDX/man/discrete.PB.Rd | 182 ++++++----- FDX-2.0.0/FDX/man/fast.Discrete.Rd | 99 +++--- FDX-2.0.0/FDX/man/figures |only FDX-2.0.0/FDX/man/hist.FDX.Rd | 48 +- FDX-2.0.0/FDX/man/kernel.Rd | 127 ++++--- FDX-2.0.0/FDX/man/match.pvals.Rd |only FDX-2.0.0/FDX/man/plot.FDX.Rd | 88 +++-- FDX-2.0.0/FDX/man/print.FDX.Rd | 16 FDX-2.0.0/FDX/man/rejection.path.Rd | 26 - FDX-2.0.0/FDX/man/summary.FDX.Rd | 40 +- FDX-2.0.0/FDX/man/weighted.GR.Rd | 105 ++++-- FDX-2.0.0/FDX/man/weighted.LR.Rd | 98 ++++- FDX-2.0.0/FDX/man/weighted.PB.Rd | 104 ++++-- FDX-2.0.0/FDX/src/RcppExports.cpp | 147 ++++---- FDX-2.0.0/FDX/src/dist_fun.cpp | 15 FDX-2.0.0/FDX/src/dist_fun.h | 5 FDX-2.0.0/FDX/src/helper.cpp |only FDX-2.0.0/FDX/src/helper.h |only FDX-2.0.0/FDX/src/kernel.h |only FDX-2.0.0/FDX/src/kernel_DGR.cpp |only FDX-2.0.0/FDX/src/kernel_DLR.cpp |only FDX-2.0.0/FDX/src/kernel_DPB.cpp |only FDX-2.0.0/FDX/src/kernel_weight.cpp |only 66 files changed, 3932 insertions(+), 2668 deletions(-)
Title: Equating of Multiple Forms
Description: Equating of multiple forms using Item Response Theory (IRT) methods (Battauz M. (2017) <doi:10.1007/s11336-016-9517-x>, Battauz and 'Leoncio' (2023) <doi:10.1177/01466216231151702>, Haberman S. J. (2009) <doi:10.1002/j.2333-8504.2009.tb02197.x>).
Author: Michela Battauz [aut, cre],
Waldir Leoncio [ctb]
Maintainer: Michela Battauz <michela.battauz@uniud.it>
Diff between equateMultiple versions 1.1.0 dated 2024-10-07 and 1.1.1 dated 2024-10-15
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/EqMult.r | 3 ++- inst/doc/equateMultiple_tutorial.html | 2 +- man/plot.mlteqc.Rd | 2 +- 5 files changed, 11 insertions(+), 10 deletions(-)
More information about equateMultiple at CRAN
Permanent link
Title: Covariate-Based Covariance Functions for Nonstationary Spatial
Modeling
Description: Estimation, prediction, and simulation of nonstationary Gaussian process with modular covariate-based covariance functions.
Sources of nonstationarity, such as trend, variance, geometric anisotropy, smoothness, and nugget, can be considered based on spatial characteristics.
An induced compact-supported nonstationary covariance function is provided, enabling fast and memory-efficient computations when handling densely sampled domains.
Author: Federico Blasi [aut, cre] ,
Reinhard Furrer [ctb]
Maintainer: Federico Blasi <federico.blasi@math.uzh.ch>
Diff between cocons versions 0.1.2 dated 2024-09-06 and 0.1.3 dated 2024-10-15
cocons-0.1.2/cocons/man/getCondNumber.Rd |only cocons-0.1.2/cocons/man/getPen.Rd |only cocons-0.1.2/cocons/man/print-methods.Rd |only cocons-0.1.3/cocons/DESCRIPTION | 10 cocons-0.1.3/cocons/MD5 | 75 +- cocons-0.1.3/cocons/NEWS.md |only cocons-0.1.3/cocons/R/checkFunctions.R | 235 ++++++--- cocons-0.1.3/cocons/R/cocons.R | 38 + cocons-0.1.3/cocons/R/data.R | 20 cocons-0.1.3/cocons/R/getFunctions.R | 227 ++++---- cocons-0.1.3/cocons/R/isFunctions.R | 8 cocons-0.1.3/cocons/R/methods.R | 233 ++++----- cocons-0.1.3/cocons/R/neg2loglikelihood.R | 150 +++-- cocons-0.1.3/cocons/R/optim.R | 309 +++++------- cocons-0.1.3/cocons/R/plot.R | 6 cocons-0.1.3/cocons/R/predict.R | 112 ++-- cocons-0.1.3/cocons/R/sim.R | 73 +- cocons-0.1.3/cocons/data/holes_bm.rda |only cocons-0.1.3/cocons/inst/doc/cocons.pdf |binary cocons-0.1.3/cocons/man/GetNeg2loglikelihood.Rd | 4 cocons-0.1.3/cocons/man/GetNeg2loglikelihoodProfile.Rd | 4 cocons-0.1.3/cocons/man/GetNeg2loglikelihoodTaper.Rd | 4 cocons-0.1.3/cocons/man/GetNeg2loglikelihoodTaperProfile.Rd | 6 cocons-0.1.3/cocons/man/coco-class.Rd | 15 cocons-0.1.3/cocons/man/coco.Rd | 6 cocons-0.1.3/cocons/man/cocoOptim.Rd | 39 - cocons-0.1.3/cocons/man/cocoPredict.Rd | 68 +- cocons-0.1.3/cocons/man/cocoSim.Rd | 35 - cocons-0.1.3/cocons/man/cocons-package.Rd | 2 cocons-0.1.3/cocons/man/getCIs.Rd | 8 cocons-0.1.3/cocons/man/getCRPS.Rd | 2 cocons-0.1.3/cocons/man/getCovMatrix.Rd | 27 + cocons-0.1.3/cocons/man/getHessian.Rd | 2 cocons-0.1.3/cocons/man/getLogScore.Rd | 4 cocons-0.1.3/cocons/man/getSpatEffects.Rd | 2 cocons-0.1.3/cocons/man/holes_bm.Rd |only cocons-0.1.3/cocons/man/is.formula.Rd | 6 cocons-0.1.3/cocons/man/plot-methods.Rd | 21 cocons-0.1.3/cocons/man/plotOptimInfo.Rd | 3 cocons-0.1.3/cocons/man/show-methods.Rd | 2 cocons-0.1.3/cocons/man/summary-methods.Rd |only cocons-0.1.3/cocons/src/cocons_taper.cpp | 18 42 files changed, 1024 insertions(+), 750 deletions(-)
Title: Creation of Mock Observational Medical Outcomes Partnership
Common Data Model
Description: Creates mock data for testing and package development for the
Observational Medical Outcomes Partnership common data model. The
package offers functions crafted with pipeline-friendly
implementation, enabling users to effortlessly include only the
necessary tables for their testing needs.
Author: Mike Du [aut, cre] ,
Marti Catala [aut] ,
Edward Burn [aut] ,
Nuria Mercade-Besora [aut] ,
Xihang Chen [aut]
Maintainer: Mike Du <mike.du@ndorms.ox.ac.uk>
Diff between omock versions 0.3.0 dated 2024-09-20 and 0.3.1 dated 2024-10-15
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 16 +++++++++------- R/checkInputs.R | 5 ++--- R/mockCdmFromTables.R | 18 +++++++++++++++--- R/sysdata.rda |binary README.md | 14 +++++++------- inst/doc/a01_Creating_synthetic_clinical_tables.html | 14 +++++++------- 8 files changed, 50 insertions(+), 37 deletions(-)
Title: Discriminant Analysis with Additional Information
Description: In applications it is usual that some additional information is available. This package dawai (an acronym
for Discriminant Analysis With Additional Information) performs linear and quadratic discriminant analysis with
additional information expressed as inequality restrictions among the populations means. It also computes several
estimations of the true error rate.
Author: David Conde [aut, cre],
Miguel A. Fernandez [aut],
Bonifacio Salvador [aut]
Maintainer: David Conde <daconrio@gmail.com>
Diff between dawai versions 1.2.6 dated 2024-01-11 and 1.2.7 dated 2024-10-15
DESCRIPTION | 26 ++++++++++++++------------ MD5 | 10 ++++++---- inst/doc/GPL.txt |only inst/doc/dawai.pdf |binary inst/doc/manualdawai.pdf.asis |only man/dawai-package.Rd | 4 ++-- src/lsConstrain.c | 28 ++++++++++++++-------------- 7 files changed, 36 insertions(+), 32 deletions(-)
Title: Deep Learning with 'mlr3'
Description: Deep Learning library that extends the mlr3 framework by building
upon the 'torch' package. It allows to conveniently build, train,
and evaluate deep learning models without having to worry about low level
details. Custom architectures can be created using the graph language
defined in 'mlr3pipelines'.
Author: Sebastian Fischer [cre, aut] ,
Bernd Bischl [ctb] ,
Lukas Burk [ctb] ,
Martin Binder [aut],
Florian Pfisterer [ctb]
Maintainer: Sebastian Fischer <sebf.fischer@gmail.com>
Diff between mlr3torch versions 0.1.1 dated 2024-09-12 and 0.1.2 dated 2024-10-15
DESCRIPTION | 6 ++--- MD5 | 38 ++++++++++++++++----------------- NAMESPACE | 1 NEWS.md | 4 +++ R/DataBackendLazy.R | 15 +++---------- R/LearnerTorch.R | 1 R/TaskClassif_mnist.R | 3 -- R/TaskClassif_tiny_imagenet.R | 3 -- R/zzz.R | 1 man/mlr_backends_lazy.Rd | 12 +--------- man/mlr_learners.mlp.Rd | 1 man/mlr_learners.tab_resnet.Rd | 1 man/mlr_learners.torch_featureless.Rd | 1 man/mlr_learners.torchvision.Rd | 7 +++--- man/mlr_learners_torch.Rd | 1 man/mlr_learners_torch_image.Rd | 1 man/mlr_learners_torch_model.Rd | 1 tests/testthat/test_DataBackendLazy.R | 15 ++++--------- tests/testthat/test_LearnerTorch.R | 8 ++++-- tests/testthat/test_PipeOpTorchModel.R | 2 - 20 files changed, 57 insertions(+), 65 deletions(-)
Title: Auto-Generate Changelog using Conventional Commits
Description: Automatically generate a changelog file (NEWS.md /
CHANGELOG.md) from the git history using conventional commit messages
(<https://www.conventionalcommits.org/en/v1.0.0/>).
Author: Lorenz A. Kapsner [cre, aut, cph]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between autonewsmd versions 0.0.8 dated 2024-05-30 and 0.0.9 dated 2024-10-15
autonewsmd-0.0.8/autonewsmd/inst/doc/autonewsmd.R |only autonewsmd-0.0.8/autonewsmd/inst/doc/autonewsmd.Rmd |only autonewsmd-0.0.8/autonewsmd/inst/doc/autonewsmd.html |only autonewsmd-0.0.8/autonewsmd/vignettes/autonewsmd.Rmd |only autonewsmd-0.0.9/autonewsmd/DESCRIPTION | 14 autonewsmd-0.0.9/autonewsmd/MD5 | 38 autonewsmd-0.0.9/autonewsmd/NAMESPACE | 14 autonewsmd-0.0.9/autonewsmd/R/autonewsmd.R | 588 +++--- autonewsmd-0.0.9/autonewsmd/R/generate_autonewsmd.R | 404 ++-- autonewsmd-0.0.9/autonewsmd/R/init_autonewsmd.R | 158 - autonewsmd-0.0.9/autonewsmd/R/mdtemplate_tags_decreasing.R | 90 autonewsmd-0.0.9/autonewsmd/R/prepare_rda.R | 66 autonewsmd-0.0.9/autonewsmd/R/write_autonewsmd.R | 257 +- autonewsmd-0.0.9/autonewsmd/R/zzz.R | 10 autonewsmd-0.0.9/autonewsmd/build/vignette.rds |binary autonewsmd-0.0.9/autonewsmd/inst/doc/autonews.R |only autonewsmd-0.0.9/autonewsmd/inst/doc/autonews.html |only autonewsmd-0.0.9/autonewsmd/inst/doc/autonews.qmd |only autonewsmd-0.0.9/autonewsmd/inst/templates/news-md-template.qmd | 75 autonewsmd-0.0.9/autonewsmd/man/autonewsmd.Rd | 939 +++++----- autonewsmd-0.0.9/autonewsmd/tests/testthat.R | 24 autonewsmd-0.0.9/autonewsmd/tests/testthat/test-autonewsmd.R | 437 ++-- autonewsmd-0.0.9/autonewsmd/tests/testthat/test-lints.R | 58 autonewsmd-0.0.9/autonewsmd/vignettes/autonews.qmd |only 24 files changed, 1625 insertions(+), 1547 deletions(-)
Title: Converting 'LaTeX' 'R Journal' Articles into 'RJ-web-articles'
Description: Articles in the 'R Journal' were first authored in 'LaTeX', which performs
admirably for 'PDF' files but is less than ideal for modern online interfaces.
The 'texor' package does all the transitional chores and conversions necessary
to move to the online versions.
Author: Abhishek Ulayil [aut, cre, cph]
,
Heather Turner [ctb] ,
Christophe Dervieux [ctb] ,
Mitchell O'Hara-Wild [ctb] ,
Dianne Cook [ctb] ,
Yinxiang Huang [ctb]
Maintainer: Abhishek Ulayil <perricoq@outlook.com>
Diff between texor versions 1.3.0 dated 2023-09-27 and 1.5.0 dated 2024-10-15
texor-1.3.0/texor/inst/examples/article/texor-figure-meta.yaml |only texor-1.5.0/texor/DESCRIPTION | 22 texor-1.5.0/texor/LICENSE | 2 texor-1.5.0/texor/MD5 | 76 +- texor-1.5.0/texor/NAMESPACE | 2 texor-1.5.0/texor/NEWS.md | 46 + texor-1.5.0/texor/R/article-tools.R | 307 ++++++++- texor-1.5.0/texor/R/automation-tools.R | 24 texor-1.5.0/texor/R/rnw-tools.R |only texor-1.5.0/texor/R/table-tools.R | 71 ++ texor-1.5.0/texor/build/vignette.rds |binary texor-1.5.0/texor/inst/algorithm_reader.lua |only texor-1.5.0/texor/inst/algorithm_remove.lua |only texor-1.5.0/texor/inst/auto_number_equations.lua |only texor-1.5.0/texor/inst/bookdown_ref.lua | 39 - texor-1.5.0/texor/inst/doc/How-texor-convert-Sweave-to-R-Markdown.Rmd |only texor-1.5.0/texor/inst/doc/How-texor-convert-Sweave-to-R-Markdown.html |only texor-1.5.0/texor/inst/doc/environment-handling.R | 6 texor-1.5.0/texor/inst/doc/environment-handling.Rmd | 183 ++++- texor-1.5.0/texor/inst/doc/environment-handling.html | 320 +++++----- texor-1.5.0/texor/inst/doc/introduction-to-texor.R | 2 texor-1.5.0/texor/inst/doc/introduction-to-texor.Rmd | 72 +- texor-1.5.0/texor/inst/doc/introduction-to-texor.html | 179 +++-- texor-1.5.0/texor/inst/equation_filter.lua | 1 texor-1.5.0/texor/inst/examples/sweave_article |only texor-1.5.0/texor/inst/extdata/Metafix.sty | 23 texor-1.5.0/texor/inst/extdata/auto-number-sec-js.html |only texor-1.5.0/texor/inst/extdata/pseudocodejs-latest.html |only texor-1.5.0/texor/inst/fig_code_chunk.lua |only texor-1.5.0/texor/inst/latex_body_reader.lua |only texor-1.5.0/texor/inst/r_code_chunk_patcher.lua |only texor-1.5.0/texor/inst/sec_depth.lua |only texor-1.5.0/texor/inst/sweave_code_reader.lua |only texor-1.5.0/texor/inst/sweave_code_remove.lua |only texor-1.5.0/texor/inst/table_code_chunk.lua |only texor-1.5.0/texor/man/convert_to_markdown.Rd | 22 texor-1.5.0/texor/man/convert_to_native.Rd | 6 texor-1.5.0/texor/man/figures/texor-hex-sticker.png |only texor-1.5.0/texor/man/figures/texor-hex-sticker.svg |only texor-1.5.0/texor/man/generate_rmd.Rd | 2 texor-1.5.0/texor/man/latex_to_web.Rd | 21 texor-1.5.0/texor/man/patch_table_env.Rd | 2 texor-1.5.0/texor/man/produce_html.Rd | 6 texor-1.5.0/texor/man/rnw_generate_rmd.Rd |only texor-1.5.0/texor/man/rnw_to_rmd.Rd |only texor-1.5.0/texor/tests/testthat/test-rnw-tools.R |only texor-1.5.0/texor/vignettes/How-texor-convert-Sweave-to-R-Markdown.Rmd |only texor-1.5.0/texor/vignettes/environment-handling.Rmd | 183 ++++- texor-1.5.0/texor/vignettes/introduction-to-texor.Rmd | 72 +- texor-1.5.0/texor/vignettes/texor.bib |only 50 files changed, 1294 insertions(+), 395 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-26 2.1.3
Title: Convert and Aggregate Bibliographies
Description: Authors working with 'LaTeX' articles use the built-in bibliography
options and 'BibTeX' files. While this might work with 'LaTeX', it does not
function well with Web articles. As a way out, 'rebib' offers tools to
convert and combine bibliographies from both sources.
Author: Abhishek Ulayil [aut, cre, cph]
,
Heather Turner [ctb] ,
Christophe Dervieux [ctb] ,
Mitchell O'Hara-Wild [ctb] ,
Dianne Cook [ctb] ,
Yinxiang Huang [ctb]
Maintainer: Abhishek Ulayil <perricoq@outlook.com>
Diff between rebib versions 0.3.2 dated 2023-09-08 and 0.5.0 dated 2024-10-15
rebib-0.3.2/rebib/inst/WORDLIST |only rebib-0.3.2/rebib/tests/spelling.R |only rebib-0.5.0/rebib/DESCRIPTION | 18 ++++-- rebib-0.5.0/rebib/MD5 | 28 ++++------ rebib-0.5.0/rebib/NEWS.md | 10 +++ rebib-0.5.0/rebib/R/parser.R | 56 ++++++++++++++++++--- rebib-0.5.0/rebib/R/tools.R | 18 +++++- rebib-0.5.0/rebib/R/util.R | 3 - rebib-0.5.0/rebib/build/vignette.rds |binary rebib-0.5.0/rebib/inst/doc/general-Introduction.R | 2 rebib-0.5.0/rebib/inst/doc/general-usage.R | 2 rebib-0.5.0/rebib/inst/doc/general-usage.html | 6 +- rebib-0.5.0/rebib/inst/doc/parser-mechanics.R | 2 rebib-0.5.0/rebib/inst/doc/parser-mechanics.html | 2 rebib-0.5.0/rebib/inst/doc/use-with-rjarticle.R | 2 rebib-0.5.0/rebib/inst/doc/use-with-rjarticle.html | 2 16 files changed, 109 insertions(+), 42 deletions(-)
Title: Text Analysis Utilities
Description: Utilities for text analysis.
Author: Christian Buchta [aut],
Kurt Hornik [aut, cre] ,
Ingo Feinerer [aut],
David Meyer [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between tau versions 0.0-25 dated 2023-11-29 and 0.0-26 dated 2024-10-15
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/sysdata.rda |binary src/textcnt.c | 7 ++++++- 4 files changed, 12 insertions(+), 7 deletions(-)
Title: Sparse Lightweight Arrays and Matrices
Description: Data structures and algorithms for sparse arrays and matrices,
based on index arrays and simple triplet representations, respectively.
Author: Kurt Hornik [aut, cre] ,
David Meyer [aut] ,
Christian Buchta [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between slam versions 0.1-53 dated 2024-09-02 and 0.1-54 dated 2024-10-15
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/sparse.c | 9 +++++++++ 3 files changed, 14 insertions(+), 5 deletions(-)
Title: 'Shiny' App Usage Telemetry
Description: Enables instrumentation of 'Shiny' apps for tracking user
session events such as input changes, browser type, and session
duration. These events can be sent to any of the available storage
backends and analyzed using the included 'Shiny' app to gain insights
about app usage and adoption.
Author: Andre Verissimo [aut, cre],
Kamil Zyla [aut],
Krystian Igras [aut],
Recle Vibal [aut],
Arun Kodati [aut],
Wahaduzzaman Khan [aut],
Appsilon Sp. z o.o. [cph]
Maintainer: Andre Verissimo <opensource+andre@appsilon.com>
Diff between shiny.telemetry versions 0.3.0 dated 2024-07-17 and 0.3.1 dated 2024-10-15
DESCRIPTION | 18 +- MD5 | 22 +-- NEWS.md | 11 + R/prepare-admin-panel.R | 10 + R/telemetry.R | 145 ++++++++++++----------- README.md | 2 build/vignette.rds |binary inst/doc/databases.html | 2 inst/doc/rhino.html | 44 +++--- inst/doc/tracking-specific-input-id.html | 2 inst/examples/app/instrumentation/user_stats.txt | 46 +------ man/Telemetry.Rd | 23 +++ 12 files changed, 175 insertions(+), 150 deletions(-)
More information about shiny.telemetry at CRAN
Permanent link
Title: Flexible Options for Handling Missing Values
Description: For use in summary functions to omit missing values
conditionally using specified checks.
Author: Danny Parsons [aut, cre] ,
Shadrack Kibet [aut],
Lily Clements [ctb]
Maintainer: Danny Parsons <danny@idems.international>
Diff between naflex versions 0.1.0 dated 2022-01-26 and 0.1.1 dated 2024-10-15
DESCRIPTION | 15 - MD5 | 14 NEWS.md | 6 R/naflex.R | 1 README.md | 15 - build/vignette.rds |binary inst/doc/introduction-to-naflex.html | 508 ++++++++++++++++++++++++++--------- man/naflex.Rd | 18 + 8 files changed, 440 insertions(+), 137 deletions(-)
Title: Inference in Graphical Gaussian Models with Edge and Vertex
Symmetries
Description: Estimation, model selection and other aspects of
statistical inference in Graphical Gaussian models with edge and
vertex symmetries (Graphical Gaussian models with colours).
Documentation about 'gRc' is provided in the paper by Hojsgaard and
Lauritzen (2007, <doi:10.18637/jss.v023.i06>) and the paper by
Hojsgaard and Lauritzen (2008, <doi:10.1111/j.1467-9868.2008.00666.x>).
Author: Steffen Lauritzen [aut, cph],
Soeren Hoejsgaard [aut, cre, cph]
Maintainer: Soeren Hoejsgaard <sorenh@math.aau.dk>
Diff between gRc versions 0.5.0 dated 2024-03-28 and 0.5.1 dated 2024-10-15
DESCRIPTION | 17 ++++++++++++----- MD5 | 16 ++++++++-------- R/fit_doc.R | 2 +- R/fit_rcon_ipm.R | 8 ++++---- R/fit_rcor_ipm.R | 2 +- R/fit_rcox_scoring.R | 2 +- R/rcox.R | 14 +++++++------- R/update.R | 4 ++-- man/fit-doc.Rd | 2 +- 9 files changed, 37 insertions(+), 30 deletions(-)
Title: Counterfactual Explanations
Description: Modular and unified R6-based interface for counterfactual explanation methods.
The following methods are currently implemented: Burghmans et al. (2022) <doi:10.48550/arXiv.2104.07411>,
Dandl et al. (2020) <doi:10.1007/978-3-030-58112-1_31> and Wexler et al. (2019) <doi:10.1109/TVCG.2019.2934619>.
Optional extensions allow these methods to be applied to a variety of models and use cases.
Once generated, the counterfactuals can be analyzed and visualized by provided functionalities.
Author: Susanne Dandl [aut, cre] ,
Andreas Hofheinz [aut],
Martin Binder [ctb],
Giuseppe Casalicchio [ctb]
Maintainer: Susanne Dandl <dandls.datascience@gmail.com>
Diff between counterfactuals versions 0.1.4 dated 2024-05-14 and 0.1.5 dated 2024-10-15
DESCRIPTION | 8 MD5 | 34 - NEWS.md | 3 R/Counterfactuals.R | 2 R/MOCClassif.R | 2 R/MOCRegr.R | 2 R/RandomSearchClassif.R | 2 R/RandomSearchRegr.R | 2 R/moc_algo.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/how-to-add-new-cf-methods.html | 798 +++++++++++++++++++++++++------- inst/doc/introduction.html | 345 ++++++------- inst/doc/other_models.html | 269 +++++----- man/MOCClassif.Rd | 2 man/MOCRegr.Rd | 2 man/RandomSearchClassif.Rd | 2 man/RandomSearchRegr.Rd | 2 18 files changed, 989 insertions(+), 488 deletions(-)
More information about counterfactuals at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-09-26 0.1.0
Title: Multicountry Term Structure of Interest Rates Models
Description: Estimation routines for several classes of affine term structure of interest rates models. All the models are based on the single-country unspanned macroeconomic risk framework from Joslin, Priebsch, and Singleton (2014, JF) <doi:10.1111/jofi.12131>. Multicountry extensions such as the ones of Jotikasthira, Le, and Lundblad (2015, JFE) <doi:10.1016/j.jfineco.2014.09.004>, Candelon and Moura (2023, EM) <doi:10.1016/j.econmod.2023.106453>, and Candelon and Moura (Forthcoming, JFEC) <doi:10.1093/jjfinec/nbae008> are also available.
Author: Rubens Moura [aut, cre]
Maintainer: Rubens Moura <rubens.gtmoura@gmail.com>
Diff between MultiATSM versions 0.3.6 dated 2024-04-29 and 1.0.0 dated 2024-10-15
MultiATSM-0.3.6/MultiATSM/R/A0N__computeBnAn.R |only MultiATSM-0.3.6/MultiATSM/R/AuxiliarBootstrapFunctions.R |only MultiATSM-0.3.6/MultiATSM/R/CM_Factors_2023.R |only MultiATSM-0.3.6/MultiATSM/R/CM_Factors_GVAR_2023.R |only MultiATSM-0.3.6/MultiATSM/R/CholRestrictionsJLL.R |only MultiATSM-0.3.6/MultiATSM/R/EstimationSigma_Ye.R |only MultiATSM-0.3.6/MultiATSM/R/FeedbackMatrixRestrictionsJLL.R |only MultiATSM-0.3.6/MultiATSM/R/Functionf.R |only MultiATSM-0.3.6/MultiATSM/R/GaussianDensity.R |only MultiATSM-0.3.6/MultiATSM/R/InputsForMLEdensity.R |only MultiATSM-0.3.6/MultiATSM/R/K1XQStationary.R |only MultiATSM-0.3.6/MultiATSM/R/ListModelInputs.R |only MultiATSM-0.3.6/MultiATSM/R/Maturities.R |only MultiATSM-0.3.6/MultiATSM/R/Reg__OLSconstrained.R |only MultiATSM-0.3.6/MultiATSM/R/StarFactors.R |only MultiATSM-0.3.6/MultiATSM/R/VariableLabelsOptimization.R |only MultiATSM-0.3.6/MultiATSM/R/df__dx.R |only MultiATSM-0.3.6/MultiATSM/R/llk_JLL_Sigma.R |only MultiATSM-0.3.6/MultiATSM/R/logdet.R |only MultiATSM-0.3.6/MultiATSM/R/mult_Set_Functions.R |only MultiATSM-0.3.6/MultiATSM/data/CM_Factors_GVAR_2023.rda |only MultiATSM-0.3.6/MultiATSM/inst/doc/my-vignette.R |only MultiATSM-0.3.6/MultiATSM/inst/doc/my-vignette.Rmd |only MultiATSM-0.3.6/MultiATSM/inst/doc/my-vignette.html |only MultiATSM-0.3.6/MultiATSM/man/A0N_MLEdensity_WOE__jointQ_Bootstrap.Rd |only MultiATSM-0.3.6/MultiATSM/man/A0N_MLEdensity_WOE__jointQ_sepSigma_Bootstrap.Rd |only MultiATSM-0.3.6/MultiATSM/man/A0N_MLEdensity_WOE__sepQ_Bootstrap.Rd |only MultiATSM-0.3.6/MultiATSM/man/A0N__computeBnAn_jointQ.Rd |only MultiATSM-0.3.6/MultiATSM/man/A0N__computeBnAn_sepQ.Rd |only MultiATSM-0.3.6/MultiATSM/man/ForecastYieldsJointQ.Rd |only MultiATSM-0.3.6/MultiATSM/man/ForecastYieldsSepQ.Rd |only MultiATSM-0.3.6/MultiATSM/man/Functionf_Boot.Rd |only MultiATSM-0.3.6/MultiATSM/man/GVARFactors.Rd |only MultiATSM-0.3.6/MultiATSM/man/InputsForMLEdensity.Rd |only 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MultiATSM-1.0.0/MultiATSM/R/CM_DomMacroFactors_2023.R |only MultiATSM-1.0.0/MultiATSM/R/CM_Factors.R | 2 MultiATSM-1.0.0/MultiATSM/R/CM_Factors_GVAR.R | 2 MultiATSM-1.0.0/MultiATSM/R/CM_GlobalMacroFactors.R |only MultiATSM-1.0.0/MultiATSM/R/CM_GlobalMacro_2023.R |only MultiATSM-1.0.0/MultiATSM/R/CM_Trade.R | 2 MultiATSM-1.0.0/MultiATSM/R/CM_Trade_2023.R | 2 MultiATSM-1.0.0/MultiATSM/R/CM_Yields.R | 2 MultiATSM-1.0.0/MultiATSM/R/CM_Yields_2023.R | 2 MultiATSM-1.0.0/MultiATSM/R/ConfidenceBoundsBootstrap.R | 102 MultiATSM-1.0.0/MultiATSM/R/DataForEstimation.R | 75 MultiATSM-1.0.0/MultiATSM/R/DatabasePrep.R | 40 MultiATSM-1.0.0/MultiATSM/R/FMN__Rotate.R | 26 MultiATSM-1.0.0/MultiATSM/R/Folder_Creation.R | 14 MultiATSM-1.0.0/MultiATSM/R/ForecastYields.R | 647 +- MultiATSM-1.0.0/MultiATSM/R/GVAR.R | 838 ++- MultiATSM-1.0.0/MultiATSM/R/GraphicalOutputs.R | 209 MultiATSM-1.0.0/MultiATSM/R/InputsForOpt.R |only MultiATSM-1.0.0/MultiATSM/R/InputsForOutputs.R | 77 MultiATSM-1.0.0/MultiATSM/R/JLL.R 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MultiATSM-1.0.0/MultiATSM/vignettes/references.bib | 14 220 files changed, 5256 insertions(+), 5385 deletions(-)
Title: R Markdown and Bookdown Templates to Publish Documents
Description: Producing high-quality documents suitable for publication directly from R is made possible by the R Markdown ecosystem.
'memoiR' makes it easy.
It provides templates to knit memoirs, articles and slideshows with helpers to publish the documents on GitHub Pages and activate continuous integration.
Author: Eric Marcon [aut, cre]
Maintainer: Eric Marcon <eric.marcon@agroparistech.fr>
Diff between memoiR versions 1.2-9 dated 2024-04-22 and 1.2-10 dated 2024-10-15
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NEWS.md | 8 ++++++++ R/memoiR.R | 8 +++++--- README.md | 6 +++--- build/vignette.rds |binary man/memoiR-package.Rd | 4 ++-- 7 files changed, 30 insertions(+), 20 deletions(-)
Title: Antarctic Spatial Data Manipulation
Description: Loads and creates spatial data, including layers and tools that are relevant
to the activities of the Commission for the Conservation of Antarctic Marine Living
Resources. Provides two categories of functions: load functions and create functions.
Load functions are used to import existing spatial layers from the online CCAMLR GIS
such as the ASD boundaries. Create functions are used to create layers from user data
such as polygons and grids.
Author: Stephane Thanassekos [aut, cre],
Keith Reid [aut],
Lucy Robinson [aut],
Michael D. Sumner [ctb],
Roger Bivand [ctb]
Maintainer: Stephane Thanassekos <stephane.thanassekos@ccamlr.org>
Diff between CCAMLRGIS versions 4.1.1 dated 2024-05-27 and 4.2.0 dated 2024-10-15
DESCRIPTION | 12 - MD5 | 62 +++--- NAMESPACE | 11 - NEWS.md | 10 R/CCAMLRGIS-package.R | 6 R/CCAMLRGIS_DataDescription.R | 4 R/add_Legend.R | 73 ++++++- R/create.R | 10 R/create_Arrow.R | 29 ++ R/create_CircularArrow.R |only R/create_Ellipse.R |only R/get_iso_polys.R | 13 - R/load.R | 37 +-- README.md | 422 ++++++++++++++++++++++++++++++++++-------- build/vignette.rds |binary inst/doc/CCAMLRGIS.html | 4 inst/extdata/SmallBathy.tif |binary man/CCAMLRp.Rd | 2 man/Coast.Rd | 2 man/SmallBathy.Rd | 4 man/add_Legend.Rd | 45 +++- man/create_Arrow.Rd | 28 ++ man/create_CircularArrow.Rd |only man/create_Ellipse.Rd |only man/create_Polys.Rd | 10 man/load_ASDs.Rd | 2 man/load_Bathy.Rd | 12 - man/load_Coastline.Rd | 2 man/load_EEZs.Rd | 2 man/load_MAs.Rd | 2 man/load_MPAs.Rd | 2 man/load_RBs.Rd | 2 man/load_SSMUs.Rd | 2 man/load_SSRUs.Rd | 2 34 files changed, 630 insertions(+), 182 deletions(-)
Title: Massive Hierarchically Data Analysis
Description: Three main functions about analyzing massive data (missing observations are allowed) considered from multiple layers of categories.
Author: Yarong Yang [aut, cre],
Jacob Zhang [aut]
Maintainer: Yarong Yang <Yi.YA_yaya@hotmail.com>
Diff between MHDA versions 1.3 dated 2024-10-08 and 1.4 dated 2024-10-15
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/MHDA.plot.R | 7 ++++--- man/MHDA-package.Rd | 4 ++-- man/MHDA.Rd | 2 ++ man/MHDA.plot.Rd | 2 ++ man/Res.mhda.1-class.Rd | 2 +- man/Res.mhda.2-class.Rd | 2 +- 8 files changed, 23 insertions(+), 18 deletions(-)
Title: Bayesian Stability Analysis of Genotype by Environment
Interaction (GEI)
Description: Performs general Bayesian estimation method of linear–bilinear models for genotype × environment interaction. The method is explained in Perez-Elizalde, S., Jarquin, D., and Crossa, J. (2011) (<doi:10.1007/s13253-011-0063-9>).
Author: Muhammad Yaseen [aut, cre],
Diego Jarquin [aut, ctb],
Sergio Perez-Elizalde [aut, ctb],
Juan Burgueno [aut, ctb],
Jose Crossa [aut, ctb]
Maintainer: Muhammad Yaseen <myaseen208@gmail.com>
Diff between baystability versions 0.1.0 dated 2018-03-13 and 0.2.0 dated 2024-10-15
DESCRIPTION | 13 +-- MD5 | 31 ++++---- NAMESPACE | 9 +- R/bayes_ammi.R | 200 +++++++++++++++++++++++++++++++++++++++++++++-------- R/e_eff.R | 7 - R/g_eff.R | 7 - R/ge_ammi.R | 9 -- R/ge_eff.R | 7 - R/ge_mean.R | 7 - R/ge_model.R | 9 -- R/ge_var.R | 8 -- R/orthnorm.R | 5 - README.md | 108 ++++++++++++++++++++++++++-- inst |only man/bayes_ammi.Rd | 154 ++++++++++++++++++++++++++++++++++++++-- man/cultivo2008.Rd | 4 - man/cultivo2009.Rd | 4 - 17 files changed, 476 insertions(+), 106 deletions(-)
Title: Bayesian Estimation of the Additive Main Effects and
Multiplicative Interaction Model
Description: Performs Bayesian estimation of the additive main effects and multiplicative interaction (AMMI) model. The method is explained in Crossa, J., Perez-Elizalde, S., Jarquin, D., Cotes, J.M., Viele, K., Liu, G. and Cornelius, P.L. (2011) (<doi:10.2135/cropsci2010.06.0343>).
Author: Muhammad Yaseen [aut, cre],
Jose Crossa [aut, ctb],
Sergio Perez-Elizalde [aut, ctb],
Diego Jarquin [aut, ctb],
Jose Miguel Cotes [aut, ctb],
Kert Viele [aut, ctb],
Genzhou Liu [aut, ctb],
Paul L. Cornelius [aut, ctb]
Maintainer: Muhammad Yaseen <myaseen208@gmail.com>
Diff between bayesammi versions 0.1.0 dated 2018-04-12 and 0.2.0 dated 2024-10-15
DESCRIPTION | 32 +++++++------- MD5 | 49 +++++++++++----------- R/Maiz.R | 2 R/bayes_ammi.R | 2 R/e_eff.R | 3 - R/g_eff.R | 2 R/ge_ammi.R | 6 +- R/ge_eff.R | 2 R/ge_mean.R | 2 R/ge_model.R | 2 R/ge_var.R | 2 R/matrix_k.R | 2 R/orthnorm.R | 65 ++++++++++++++++-------------- README.md | 117 ++++++++++++++++++++++++++++++++++++++++++++++++++---- inst |only man/Maiz.Rd | 6 +- man/bayes_ammi.Rd | 2 man/e_eff.Rd | 2 man/g_eff.Rd | 2 man/ge_ammi.Rd | 2 man/ge_eff.Rd | 2 man/ge_mean.Rd | 2 man/ge_model.Rd | 2 man/ge_var.Rd | 2 man/matrix_k.Rd | 2 man/orthnorm.Rd | 2 26 files changed, 213 insertions(+), 101 deletions(-)