Sat, 09 Nov 2024

Package RoBTT updated to version 1.3.1 with previous version 1.3.0 dated 2024-04-04

Title: Robust Bayesian T-Test
Description: An implementation of Bayesian model-averaged t-tests that allows users to draw inferences about the presence versus absence of an effect, variance heterogeneity, and potential outliers. The 'RoBTT' package estimates ensembles of models created by combining competing hypotheses and applies Bayesian model averaging using posterior model probabilities. Users can obtain model-averaged posterior distributions and inclusion Bayes factors, accounting for uncertainty in the data-generating process (Maier et al., 2024, <doi:10.3758/s13423-024-02590-5>). The package also provides a truncated likelihood version of the model-averaged t-test, enabling users to exclude potential outliers without introducing bias (Godmann et al., 2024, <doi:10.31234/osf.io/j9f3s>). Users can specify a wide range of informative priors for all parameters of interest. The package offers convenient functions for summary, visualization, and fit diagnostics.
Author: Frantisek Bartos [aut, cre] , Maximilian Maier [aut] , Henrik R Godmann [aut]
Maintainer: Frantisek Bartos <f.bartos96@gmail.com>

Diff between RoBTT versions 1.3.0 dated 2024-04-04 and 1.3.1 dated 2024-11-09

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Package PAGFL updated to version 1.1.2 with previous version 1.1.1 dated 2024-07-23

Title: Joint Estimation of Latent Groups and Group-Specific Coefficients in Panel Data Models
Description: Latent group structures are a common challenge in panel data analysis. Disregarding group-level heterogeneity can introduce bias. Conversely, estimating individual coefficients for each cross-sectional unit is inefficient and may lead to high uncertainty. This package addresses the issue of unobservable group structures by implementing the pairwise adaptive group fused Lasso (PAGFL) by Mehrabani (2023) <doi:10.1016/j.jeconom.2022.12.002>. PAGFL identifies latent group structures and group-specific coefficients in a single step. On top of that, we extend the PAGFL to time-varying coefficient functions.
Author: Paul Haimerl [aut, cre] , Stephan Smeekes [ctb] , Ines Wilms [ctb] , Ali Mehrabani [ctb]
Maintainer: Paul Haimerl <paul.haimerl@econ.au.dk>

Diff between PAGFL versions 1.1.1 dated 2024-07-23 and 1.1.2 dated 2024-11-09

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Package av updated to version 0.9.3 with previous version 0.9.2 dated 2024-10-04

Title: Working with Audio and Video in R
Description: Bindings to 'FFmpeg' <http://www.ffmpeg.org/> AV library for working with audio and video in R. Generates high quality video from images or R graphics with custom audio. Also offers high performance tools for reading raw audio, creating 'spectrograms', and converting between countless audio / video formats. This package interfaces directly to the C API and does not require any command line utilities.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>

Diff between av versions 0.9.2 dated 2024-10-04 and 0.9.3 dated 2024-11-09

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More information about av at CRAN
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Package pkglite updated to version 0.2.4 with previous version 0.2.3 dated 2024-09-25

Title: Compact Package Representations
Description: A tool, grammar, and standard to represent and exchange R package source code as text files. Converts one or more source packages to a text file and restores the package structures from the file.
Author: Nan Xiao [aut, cre] , Yilong Zhang [aut], Keaven Anderson [aut], Amin Shirazi [ctb], Jeff Cheng [ctb], Danfeng Fu [ctb], Merck & Co., Inc., Rahway, NJ, USA and its affiliates [cph]
Maintainer: Nan Xiao <nan.xiao1@merck.com>

Diff between pkglite versions 0.2.3 dated 2024-09-25 and 0.2.4 dated 2024-11-09

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Package jmvReadWrite updated to version 0.4.8 with previous version 0.4.7 dated 2024-07-09

Title: Read and Write 'jamovi' Files ('.omv')
Description: The free and open a statistical spreadsheet 'jamovi' (<https://www.jamovi.org>) aims to make statistical analyses easy and intuitive. 'jamovi' produces syntax that can directly be used in R (in connection with the R-package 'jmv'). Having import / export routines for the data files 'jamovi' produces ('.omv') permits an easy transfer of data and analyses between 'jamovi' and R.
Author: Sebastian Jentschke [aut, cre, cph]
Maintainer: Sebastian Jentschke <sebastian.jentschke@uib.no>

Diff between jmvReadWrite versions 0.4.7 dated 2024-07-09 and 0.4.8 dated 2024-11-09

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Package viewscape updated to version 2.0.0 with previous version 1.0.0 dated 2024-02-04

Title: Viewscape Analysis
Description: A collection of functions to make R a more effective viewscape analysis tool for calculating viewscape metrics based on computing the viewable area for given a point/multiple viewpoints and a digital elevation model.The method of calculating viewscape metrics implemented in this package are based on the work of Tabrizian et al. (2020) <doi:10.1016/j.landurbplan.2019.103704>. The algorithm of computing viewshed is based on the work of Franklin & Ray. (1994) <https://citeseerx.ist.psu.edu/document?repid=rep1&type=pdf&doi=555780f6f5d7e537eb1edb28862c86d1519af2be>.
Author: Xiaohao Yang [aut, cre, cph], Nathan Fox [aut], Derek Van Berkel [aut], Mark Lindquist [aut]
Maintainer: Xiaohao Yang <xiaohaoy@umich.edu>

Diff between viewscape versions 1.0.0 dated 2024-02-04 and 2.0.0 dated 2024-11-09

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Package NCA updated to version 4.0.2 with previous version 4.0.1 dated 2024-02-23

Title: Necessary Condition Analysis
Description: Performs a Necessary Condition Analysis (NCA). (Dul, J. 2016. Necessary Condition Analysis (NCA). ''Logic and Methodology of 'Necessary but not Sufficient' causality." Organizational Research Methods 19(1), 10-52) <doi:10.1177/1094428115584005>. NCA identifies necessary (but not sufficient) conditions in datasets, where x causes (e.g. precedes) y. Instead of drawing a regression line ''through the middle of the data'' in an xy-plot, NCA draws the ceiling line. The ceiling line y = f(x) separates the area with observations from the area without observations. (Nearly) all observations are below the ceiling line: y <= f(x). The empty zone is in the upper left hand corner of the xy-plot (with the convention that the x-axis is ''horizontal'' and the y-axis is ''vertical'' and that values increase ''upwards'' and ''to the right''). The ceiling line is a (piecewise) linear non-decreasing line: a linear step function or a straight line. It indicates which level of x (e.g. an effort or [...truncated...]
Author: Jan Dul [aut], Govert Buijs [cre]
Maintainer: Govert Buijs <buijs@rsm.nl>

Diff between NCA versions 4.0.1 dated 2024-02-23 and 4.0.2 dated 2024-11-09

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Package fda.usc updated to version 2.2.0 with previous version 2.1.0 dated 2022-10-17

Title: Functional Data Analysis and Utilities for Statistical Computing
Description: Routines for exploratory and descriptive analysis of functional data such as depth measurements, atypical curves detection, regression models, supervised classification, unsupervised classification and functional analysis of variance.
Author: Manuel Febrero Bande [aut] , Manuel Oviedo de la Fuente [aut, cre] , Pedro Galeano [ctb], Alicia Nieto [ctb], Eduardo Garcia-Portugues [ctb]
Maintainer: Manuel Oviedo de la Fuente <manuel.oviedo@udc.es>

Diff between fda.usc versions 2.1.0 dated 2022-10-17 and 2.2.0 dated 2024-11-09

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Package EGAnet updated to version 2.1.0 with previous version 2.0.8 dated 2024-09-27

Title: Exploratory Graph Analysis – a Framework for Estimating the Number of Dimensions in Multivariate Data using Network Psychometrics
Description: Implements the Exploratory Graph Analysis (EGA) framework for dimensionality and psychometric assessment. EGA estimates the number of dimensions in psychological data using network estimation methods and community detection algorithms. A bootstrap method is provided to assess the stability of dimensions and items. Fit is evaluated using the Entropy Fit family of indices. Unique Variable Analysis evaluates the extent to which items are locally dependent (or redundant). Network loadings provide similar information to factor loadings and can be used to compute network scores. A bootstrap and permutation approach are available to assess configural and metric invariance. Hierarchical structures can be detected using Hierarchical EGA. Time series and intensive longitudinal data can be analyzed using Dynamic EGA, supporting individual, group, and population level assessments.
Author: Hudson Golino [aut, cre] , Alexander Christensen [aut] , Robert Moulder [ctb] , Luis E. Garrido [ctb] , Laura Jamison [ctb] , Dingjing Shi [ctb]
Maintainer: Hudson Golino <hfg9s@virginia.edu>

Diff between EGAnet versions 2.0.8 dated 2024-09-27 and 2.1.0 dated 2024-11-09

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Package BED updated to version 1.6.0 with previous version 1.5.2 dated 2024-05-22

Title: Biological Entity Dictionary (BED)
Description: An interface for the 'Neo4j' database providing mapping between different identifiers of biological entities. This Biological Entity Dictionary (BED) has been developed to address three main challenges. The first one is related to the completeness of identifier mappings. Indeed, direct mapping information provided by the different systems are not always complete and can be enriched by mappings provided by other resources. More interestingly, direct mappings not identified by any of these resources can be indirectly inferred by using mappings to a third reference. For example, many human Ensembl gene ID are not directly mapped to any Entrez gene ID but such mappings can be inferred using respective mappings to HGNC ID. The second challenge is related to the mapping of deprecated identifiers. Indeed, entity identifiers can change from one resource release to another. The identifier history is provided by some resources, such as Ensembl or the NCBI, but it is generally not used by mapping [...truncated...]
Author: Patrice Godard [aut, cre, cph]
Maintainer: Patrice Godard <patrice.godard@gmail.com>

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Package ProTrackR2 updated to version 0.0.5 with previous version 0.0.4 dated 2024-10-28

Title: Manipulate and Play 'ProTracker' Modules
Description: 'ProTracker' is a popular music tracker to sequence music on a Commodore Amiga machine. This package offers the opportunity to import, export, manipulate and play 'ProTracker' module files. Even though the file format could be considered archaic, it still remains popular to this date. This package intends to contribute to this popularity and therewith keeping the legacy of 'ProTracker' and the Commodore Amiga alive. This package is the successor of 'ProTrackR' providing better performance.
Author: Pepijn de Vries [aut, cre] , Olav Soerensen [aut]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>

Diff between ProTrackR2 versions 0.0.4 dated 2024-10-28 and 0.0.5 dated 2024-11-09

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Package fusionchartsR updated to version 1.0.0 with previous version 0.0.3 dated 2021-12-20

Title: Embedding FusionCharts in R
Description: FusionCharts provides awesome and minimalist functions to make beautiful interactive charts <https://www.fusioncharts.com/>.
Author: Alex Yahiaoui Martinez [aut, cre]
Maintainer: Alex Yahiaoui Martinez <yahiaoui-martinez.alex@outlook.com>

Diff between fusionchartsR versions 0.0.3 dated 2021-12-20 and 1.0.0 dated 2024-11-09

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 fusionchartsR-1.0.0/fusionchartsR/DESCRIPTION                                                              |   23 
 fusionchartsR-1.0.0/fusionchartsR/LICENSE                                                                  |    4 
 fusionchartsR-1.0.0/fusionchartsR/MD5                                                                      |   78 -
 fusionchartsR-1.0.0/fusionchartsR/NAMESPACE                                                                |   63 
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 fusionchartsR-1.0.0/fusionchartsR/R/fusionAxis.R                                                           |  120 -
 fusionchartsR-1.0.0/fusionchartsR/R/fusionBackground.R                                                     |  209 +--
 fusionchartsR-1.0.0/fusionchartsR/R/fusionCanvas.R                                                         |  165 +-
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 fusionchartsR-1.0.0/fusionchartsR/R/fusionTheme.R                                                          |   50 
 fusionchartsR-1.0.0/fusionchartsR/R/fusionTooltip.R                                                        |   85 -
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 fusionchartsR-1.0.0/fusionchartsR/man/fusionPlot.Rd                                                        |    5 
 fusionchartsR-1.0.0/fusionchartsR/man/fusionTrendline.Rd                                                   |    8 
 fusionchartsR-1.0.0/fusionchartsR/man/pipe.Rd                                                              |   18 
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Package ExposR updated to version 1.2 with previous version 1.1 dated 2023-06-14

Title: Models Topographic Exposure to Hurricane Winds
Description: The EXPOS model uses a digital elevation model (DEM) to estimate exposed and protected areas for a given hurricane wind direction and inflection angle. The resulting topographic exposure maps can be combined with output from the HURRECON model to estimate hurricane wind damage across a region. For details on the original version of the EXPOS model written in 'Borland Pascal', see: Boose, Foster, and Fluet (1994) <doi:10.2307/2937142>, Boose, Chamberlin, and Foster (2001) <doi:10.1890/0012-9615(2001)071[0027:LARIOH]2.0.CO;2>, and Boose, Serrano, and Foster (2004) <doi:10.1890/02-4057>.
Author: Emery Boose [aut, cre], President and Fellows of Harvard College [cph]
Maintainer: Emery Boose <boose@fas.harvard.edu>

Diff between ExposR versions 1.1 dated 2023-06-14 and 1.2 dated 2024-11-09

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Package GofCens updated to version 1.2.1 with previous version 1.2 dated 2024-10-25

Title: Goodness-of-Fit Methods for Complete and Right-Censored Data
Description: Graphical tools and goodness-of-fit tests for complete and right-censored data: 1. Kolmogorov-Smirnov, Cramér-von Mises, and Anderson-Darling tests, which utilize the empirical distribution function for complete data and are extended to handle right-censored data. 2. Generalized chi-squared-type test, which is based on the squared differences between observed and expected counts using random cells with right-censored data. 3. Graphical tools, such as probability and cumulative hazard plots, to help guide decisions about the most appropriate parametric model for the data.
Author: Klaus Langohr [aut, cre], Mireia Besalu [aut], Matilde Francisco [aut], Arnau Garcia [aut], Guadalupe Gomez [aut]
Maintainer: Klaus Langohr <klaus.langohr@upc.edu>

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 GofCens-1.2.1/GofCens/man/print.ADcens.Rd                 |    2 
 GofCens-1.2.1/GofCens/man/print.CvMcens.Rd                |    2 
 GofCens-1.2.1/GofCens/man/print.KScens.Rd                 |    2 
 GofCens-1.2.1/GofCens/man/print.chisqcens.Rd              |    2 
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More information about GofCens at CRAN
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Package bayesMig updated to version 1.0-0 with previous version 0.4-6 dated 2023-10-01

Title: Bayesian Projection of Migration
Description: Producing probabilistic projections of net migration rate for all countries of the world or for subnational units using a Bayesian hierarchical model by Azose an Raftery (2015) <doi:10.1007/s13524-015-0415-0>.
Author: Jon Azose [aut], Hana Sevcikova [aut, cre], Adrian Raftery [aut]
Maintainer: Hana Sevcikova <hanas@uw.edu>

Diff between bayesMig versions 0.4-6 dated 2023-10-01 and 1.0-0 dated 2024-11-09

 ChangeLog                           |   13 ++++
 DESCRIPTION                         |   14 ++--
 MD5                                 |   34 ++++++-----
 NAMESPACE                           |    9 +++
 R/bayesMig.R                        |   10 ++-
 R/get_outputs.R                     |   20 ++++++
 R/mcmc_ini.R                        |    4 -
 R/mcmc_update.R                     |    5 +
 R/mig_adjust.R                      |only
 R/plot_functions.R                  |  104 +++++++++++++++++++++++++++++-------
 R/predict_mig.R                     |   82 ++++++++++++++++++++++++++--
 build/partial.rdb                   |binary
 man/bayesMig-package.Rd             |   13 +++-
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 man/get.mig.trajectories.Rd         |only
 man/internal.Rd                     |    5 +
 man/mig.adjust.Rd                   |only
 man/mig.predict.Rd                  |    5 +
 man/mig.write.projection.summary.Rd |    6 +-
 man/plot-traj.Rd                    |   13 ++++
 20 files changed, 279 insertions(+), 58 deletions(-)

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Package semptools updated to version 0.3.1 with previous version 0.3.0 dated 2024-10-21

Title: Customizing Structural Equation Modelling Plots
Description: Most function focus on specific ways to customize a graph. They use a 'qgraph' output as the first argument, and return a modified 'qgraph' object. This allows the functions to be chained by a pipe operator.
Author: Shu Fai Cheung [aut, cre] , Mark Hok Chio Lai [aut]
Maintainer: Shu Fai Cheung <shufai.cheung@gmail.com>

Diff between semptools versions 0.3.0 dated 2024-10-21 and 0.3.1 dated 2024-11-09

 DESCRIPTION                            |    6 +++---
 MD5                                    |   32 +++++++++++++++++---------------
 NEWS.md                                |   17 +++++++++++++++++
 R/add_rsq.R                            |    6 ------
 R/mark_se.R                            |   19 ++++++++++++++-----
 R/mark_sig.R                           |   25 +++++++++++++++++--------
 README.md                              |    2 +-
 build/vignette.rds                     |binary
 inst/doc/keep_or_drop_nodes.html       |    4 ++--
 inst/doc/layout_matrix.html            |    4 ++--
 inst/doc/quick_start_cfa.html          |    4 ++--
 inst/doc/quick_start_sem.html          |    4 ++--
 inst/doc/second_order.html             |    4 ++--
 inst/doc/semptools.html                |    4 ++--
 man/mark_sig.Rd                        |    4 ++--
 tests/testthat/test-check_intercepts.R |   20 ++++++++++----------
 tests/testthat/test-mark-intercepts.R  |only
 tests/testthat/test-mark_ordinal.R     |only
 18 files changed, 93 insertions(+), 62 deletions(-)

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Permanent link

Package TOmicsVis (with last version 2.0.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2023-08-28 2.0.0
2023-07-20 1.2.3
2023-07-06 1.1.8

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