Title: Create Flashcards of Terms and Definitions
Description: Provides functions for creating flashcard decks of terms and
definitions. This package creates HTML slides using 'revealjs' that can be
viewed in the 'RStudio' viewer or a web browser. Users can create
flashcards from either existing built-in decks or create their own from CSV
files or vectors of function names.
Author: Jeffrey R. Stevens [aut, cre, cph]
Maintainer: Jeffrey R. Stevens <jeffrey.r.stevens@protonmail.com>
Diff between flashr versions 0.1.2 dated 2024-03-15 and 0.2.0 dated 2024-12-08
DESCRIPTION | 13 ++--- MD5 | 35 ++++++++----- NAMESPACE | 4 + NEWS.md | 5 + R/extract_functions.R |only R/flashcard.R | 81 ++++++++++++++++++++------------ R/flashr-package.R |only R/utils.R | 2 README.md | 12 +++- build/vignette.rds |binary inst/doc/flashr.R | 22 ++++---- inst/doc/flashr.Rmd | 14 +++-- inst/doc/flashr.html | 77 ++++++++++++++++++------------ man/build_functions_df.Rd |only man/extract_code.Rd |only man/extract_functions.Rd |only man/fail_gracefully.Rd | 2 man/flashr-package.Rd |only tests/testthat/test-extract_functions.R |only tests/testthat/test-flashcard.R | 46 +++++++++++++----- tests/testthat/test-utils.R | 1 vignettes/flashr.Rmd | 14 +++-- 22 files changed, 216 insertions(+), 112 deletions(-)
Title: Tidy Integration of Large Language Models
Description: A tidy interface for integrating large language model (LLM) APIs such as 'Claude', 'Openai', 'Groq','Mistral' and local models via 'Ollama' into R workflows. The package supports text and media-based interactions, interactive message history, batch request APIs, and a tidy, pipeline-oriented interface for streamlined integration into data workflows. Web services are available at <https://www.anthropic.com>, <https://openai.com>, <https://groq.com>, <https://mistral.ai/> and <https://ollama.com>.
Author: Eduard Bruell [aut, cre],
Jia Zhang [ctb]
Maintainer: Eduard Bruell <eduard.bruell@zew.de>
Diff between tidyllm versions 0.2.0 dated 2024-11-07 and 0.3.0 dated 2024-12-08
tidyllm-0.2.0/tidyllm/R/azure_openai.R |only tidyllm-0.2.0/tidyllm/R/claude.R |only tidyllm-0.2.0/tidyllm/R/groq.R |only tidyllm-0.2.0/tidyllm/R/mistral.R |only tidyllm-0.2.0/tidyllm/R/ollama.R |only tidyllm-0.2.0/tidyllm/R/openai.R |only tidyllm-0.2.0/tidyllm/R/perform_api_request.R |only tidyllm-0.2.0/tidyllm/R/streaming_callback.R |only tidyllm-0.2.0/tidyllm/R/tidyllm.R |only tidyllm-0.2.0/tidyllm/man/generate_callback_function.Rd |only tidyllm-0.2.0/tidyllm/man/initialize_api_env.Rd |only tidyllm-0.2.0/tidyllm/man/last_reply.Rd |only tidyllm-0.2.0/tidyllm/man/last_reply_data.Rd |only tidyllm-0.2.0/tidyllm/man/last_user_message.Rd |only tidyllm-0.2.0/tidyllm/man/parse_duration_to_seconds.Rd |only tidyllm-0.2.0/tidyllm/man/perform_api_request.Rd |only tidyllm-0.2.0/tidyllm/man/ratelimit_from_header.Rd |only tidyllm-0.2.0/tidyllm/man/update_rate_limit.Rd |only tidyllm-0.2.0/tidyllm/tests/testthat/openai/api.openai.com/v1/chat/completions-65bf96-POST.R |only tidyllm-0.2.0/tidyllm/tests/testthat/test_claude.R |only tidyllm-0.2.0/tidyllm/tests/testthat/test_groq.R |only tidyllm-0.2.0/tidyllm/tests/testthat/test_mistral.R |only tidyllm-0.2.0/tidyllm/tests/testthat/test_ollama.R |only tidyllm-0.2.0/tidyllm/tests/testthat/test_openai.R |only tidyllm-0.3.0/tidyllm/DESCRIPTION | 29 tidyllm-0.3.0/tidyllm/MD5 | 170 +-- tidyllm-0.3.0/tidyllm/NAMESPACE | 38 tidyllm-0.3.0/tidyllm/NEWS.md | 274 +++++ tidyllm-0.3.0/tidyllm/R/APIProvider.R |only tidyllm-0.3.0/tidyllm/R/LLMMessage.R |only tidyllm-0.3.0/tidyllm/R/api_azure_openai.R |only tidyllm-0.3.0/tidyllm/R/api_claude.R |only tidyllm-0.3.0/tidyllm/R/api_gemini.R |only tidyllm-0.3.0/tidyllm/R/api_groq.R |only tidyllm-0.3.0/tidyllm/R/api_mistral.R |only tidyllm-0.3.0/tidyllm/R/api_ollama.R |only tidyllm-0.3.0/tidyllm/R/api_openai.R |only tidyllm-0.3.0/tidyllm/R/api_perplexity.R |only tidyllm-0.3.0/tidyllm/R/llm_message.R |only tidyllm-0.3.0/tidyllm/R/llm_verbs.R |only tidyllm-0.3.0/tidyllm/R/media.R | 1 tidyllm-0.3.0/tidyllm/R/message_retrieval.R | 146 ++ tidyllm-0.3.0/tidyllm/R/perform_api_requests.R |only tidyllm-0.3.0/tidyllm/R/rate_limits.R | 149 -- tidyllm-0.3.0/tidyllm/R/tidyllm-package.R | 2 tidyllm-0.3.0/tidyllm/R/tidyllm_schema.R | 61 + tidyllm-0.3.0/tidyllm/R/utilites.R | 93 + tidyllm-0.3.0/tidyllm/R/zzz.R | 17 tidyllm-0.3.0/tidyllm/README.md | 37 tidyllm-0.3.0/tidyllm/inst/doc/tidyllm.R | 308 ++++- tidyllm-0.3.0/tidyllm/inst/doc/tidyllm.Rmd | 258 +++- tidyllm-0.3.0/tidyllm/inst/doc/tidyllm.html | 517 ++++++---- tidyllm-0.3.0/tidyllm/man/LLMMessage.Rd | 204 --- tidyllm-0.3.0/tidyllm/man/azure_openai.Rd | 95 - tidyllm-0.3.0/tidyllm/man/azure_openai_chat.Rd |only tidyllm-0.3.0/tidyllm/man/azure_openai_embedding.Rd |only tidyllm-0.3.0/tidyllm/man/cancel_openai_batch.Rd |only tidyllm-0.3.0/tidyllm/man/chat.Rd |only tidyllm-0.3.0/tidyllm/man/chatgpt.Rd | 81 - tidyllm-0.3.0/tidyllm/man/check_batch.Rd |only tidyllm-0.3.0/tidyllm/man/check_claude_batch.Rd | 2 tidyllm-0.3.0/tidyllm/man/check_mistral_batch.Rd |only tidyllm-0.3.0/tidyllm/man/check_openai_batch.Rd | 2 tidyllm-0.3.0/tidyllm/man/claude.Rd | 76 - tidyllm-0.3.0/tidyllm/man/claude_chat.Rd |only tidyllm-0.3.0/tidyllm/man/df_llm_message.Rd | 20 tidyllm-0.3.0/tidyllm/man/embed.Rd |only tidyllm-0.3.0/tidyllm/man/fetch_batch.Rd |only tidyllm-0.3.0/tidyllm/man/fetch_claude_batch.Rd | 2 tidyllm-0.3.0/tidyllm/man/fetch_mistral_batch.Rd |only tidyllm-0.3.0/tidyllm/man/fetch_openai_batch.Rd | 2 tidyllm-0.3.0/tidyllm/man/gemini.Rd |only tidyllm-0.3.0/tidyllm/man/gemini_chat.Rd |only tidyllm-0.3.0/tidyllm/man/gemini_delete_file.Rd |only tidyllm-0.3.0/tidyllm/man/gemini_embedding.Rd |only tidyllm-0.3.0/tidyllm/man/gemini_file_metadata.Rd |only tidyllm-0.3.0/tidyllm/man/gemini_list_files.Rd |only tidyllm-0.3.0/tidyllm/man/gemini_upload_file.Rd |only tidyllm-0.3.0/tidyllm/man/get_metadata.Rd |only tidyllm-0.3.0/tidyllm/man/get_reply.Rd | 21 tidyllm-0.3.0/tidyllm/man/get_reply_data.Rd | 21 tidyllm-0.3.0/tidyllm/man/get_user_message.Rd | 14 tidyllm-0.3.0/tidyllm/man/groq.Rd | 83 - tidyllm-0.3.0/tidyllm/man/groq_chat.Rd |only tidyllm-0.3.0/tidyllm/man/groq_transcribe.Rd | 2 tidyllm-0.3.0/tidyllm/man/list_batches.Rd |only tidyllm-0.3.0/tidyllm/man/list_claude_batches.Rd | 2 tidyllm-0.3.0/tidyllm/man/list_mistral_batches.Rd |only tidyllm-0.3.0/tidyllm/man/list_openai_batches.Rd | 2 tidyllm-0.3.0/tidyllm/man/llm_message.Rd | 14 tidyllm-0.3.0/tidyllm/man/mistral.Rd | 63 - tidyllm-0.3.0/tidyllm/man/mistral_chat.Rd |only tidyllm-0.3.0/tidyllm/man/mistral_embedding.Rd | 6 tidyllm-0.3.0/tidyllm/man/ollama.Rd | 114 -- tidyllm-0.3.0/tidyllm/man/ollama_chat.Rd |only tidyllm-0.3.0/tidyllm/man/ollama_download_model.Rd | 7 tidyllm-0.3.0/tidyllm/man/ollama_embedding.Rd | 6 tidyllm-0.3.0/tidyllm/man/ollama_list_models.Rd | 2 tidyllm-0.3.0/tidyllm/man/openai.Rd | 84 - tidyllm-0.3.0/tidyllm/man/openai_chat.Rd |only tidyllm-0.3.0/tidyllm/man/openai_embedding.Rd | 15 tidyllm-0.3.0/tidyllm/man/perplexity.Rd |only tidyllm-0.3.0/tidyllm/man/perplexity_chat.Rd |only tidyllm-0.3.0/tidyllm/man/send_batch.Rd |only tidyllm-0.3.0/tidyllm/man/send_claude_batch.Rd | 2 tidyllm-0.3.0/tidyllm/man/send_mistral_batch.Rd |only tidyllm-0.3.0/tidyllm/man/send_openai_batch.Rd | 8 tidyllm-0.3.0/tidyllm/man/tidyllm-package.Rd | 5 tidyllm-0.3.0/tidyllm/man/tidyllm_schema.Rd | 4 tidyllm-0.3.0/tidyllm/tests/testthat/claude/api.anthropic.com/v1/messages-e050b5-POST.R | 18 tidyllm-0.3.0/tidyllm/tests/testthat/openai/api.openai.com/v1/chat/completions-00dde8-POST.R |only tidyllm-0.3.0/tidyllm/tests/testthat/openai_schema_multiple |only tidyllm-0.3.0/tidyllm/tests/testthat/openai_schema_single |only tidyllm-0.3.0/tidyllm/tests/testthat/test_api_claude.R |only tidyllm-0.3.0/tidyllm/tests/testthat/test_api_gemini.R |only tidyllm-0.3.0/tidyllm/tests/testthat/test_api_groq.R |only tidyllm-0.3.0/tidyllm/tests/testthat/test_api_mistral.R |only tidyllm-0.3.0/tidyllm/tests/testthat/test_api_ollama.R |only tidyllm-0.3.0/tidyllm/tests/testthat/test_api_openai.R |only tidyllm-0.3.0/tidyllm/tests/testthat/test_llm_message.R | 107 -- tidyllm-0.3.0/tidyllm/tests/testthat/test_message_retrieval.R | 194 ++- tidyllm-0.3.0/tidyllm/tests/testthat/test_pdf_page_batch.R | 10 tidyllm-0.3.0/tidyllm/vignettes/tidyllm.Rmd | 258 +++- 123 files changed, 2115 insertions(+), 1531 deletions(-)
More information about SurrogateParadoxTest at CRAN
Permanent link
Title: Create 'shiny' Applications for Cox Proportional Hazards Models
Description: Takes one or more fitted Cox proportional hazards models and writes
a 'shiny' application to a directory specified by the user. The 'shiny'
application displays predicted survival curves based on user input, and
contains none of the original data used to create the Cox model or models.
The goal is towards visualization and presentation of predicted survival
curves.
Author: Harrison Clement [aut, cre],
Subodh Selukar [aut],
Stanley Pounds [aut],
St Jude Children's Research Hospital [fnd]
Maintainer: Harrison Clement <harrisonclement16@gmail.com>
Diff between shinyCox versions 1.1.1 dated 2024-10-06 and 1.1.2 dated 2024-12-08
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/misc_functions.R | 4 ++-- R/shine_coxph.R | 4 ++-- R/shinybuilder.R | 4 ++-- 6 files changed, 18 insertions(+), 14 deletions(-)
Title: Comparing and Visualizing Differences Between Surveys
Description: Easily analyze and visualize differences between samples (e.g., benchmark comparisons, nonresponse comparisons in surveys) on three levels. The comparisons can be univariate, bivariate or multivariate. On univariate level the variables of interest of a survey and a comparison survey (i.e. benchmark) are compared, by calculating one of several difference measures (e.g., relative difference in mean), and an average difference between the surveys. On bivariate level a function can calculate significant differences in correlations for the surveys. And on multivariate levels a function can calculate significant differences in model coefficients between the surveys of comparison. All of those differences can be easily plotted and outputted as a table. For more detailed information on the methods and example use see Rohr, B., Silber, H., & Felderer, B. (2024). Comparing the Accuracy of Univariate, Bivariate, and Multivariate Estimates across Probability and Nonprobability Surveys with Po [...truncated...]
Author: Bjoern Rohr [aut, cre, cph],
Barbara Felderer [aut]
Maintainer: Bjoern Rohr <bjoern.rohr@gesis.org>
Diff between sampcompR versions 0.2.4 dated 2024-11-10 and 0.2.6 dated 2024-12-08
DESCRIPTION | 14 MD5 | 67 + NEWS.md | 12 R/Bivdiff.R | 19 R/Bivdiff_Plot.R | 11 R/Data_equalizer_Function.R | 2 R/Multidiff.R | 24 R/Multidiff_Plot.R | 20 R/Output_Tables.R | 125 ++- R/Unidiff.R | 860 +++++++++++++------------ R/Unidiff_Plot.R | 9 R/card.R |only README.md | 372 +++++----- data |only man/R_indicator.Rd | 4 man/biv_compare.Rd | 8 man/biv_compare_table.Rd | 8 man/biv_per_variable.Rd | 7 man/card.Rd |only man/dataequalizer.Rd | 2 man/figures/README-adding_logit_models-1.png |binary man/figures/README-bivariate_comparison-1.png |binary man/figures/README-ols_models-1.png |binary man/figures/README-univariate_comparison-1.png |binary man/multi_compare.Rd | 12 man/multi_compare_merge.Rd | 10 man/multi_compare_table.Rd | 12 man/multi_per_variable.Rd | 11 man/plot_biv_compare.Rd | 8 man/plot_multi_compare.Rd | 12 man/plot_uni_compare.Rd | 4 man/uni_compare.Rd | 25 man/uni_compare_table.Rd | 8 tests/testthat/helper_biv_compare.R | 22 tests/testthat/helper_multi_compare2.R | 28 tests/testthat/helper_uni_compare.R | 28 36 files changed, 912 insertions(+), 832 deletions(-)
Title: Less Code, More Results
Description: Each function replaces multiple standard R functions. For example, two function calls, Read() and CountAll(), generate summary statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for summary statistics via pivot tables, a comprehensive regression analysis, ANOVA and t-test, visualizations including the Violin/Box/Scatter plot for a numerical variable, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function call, variable labels, time series with aggregation and forecasting, color themes, and Trellis graphics. Also includes a confirmatory factor analysis of multiple indicator measurement models, pedagogical routines for data simulation such as for the Central Limit Theorem, generation and rendering of regression instructions for interpretative output, and interactive visualizations.
Author: David W. Gerbing [aut, cre]
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 4.3.8 dated 2024-10-07 and 4.3.9 dated 2024-12-08
DESCRIPTION | 8 - MD5 | 35 +++--- NEWS.md | 39 ++++++- R/Plot.R | 285 +++++++++++++++++++++++++++++++++------------------- R/STL.R | 128 ++++++++++++++--------- R/Write.R | 6 - R/plt.forecast.R |only R/plt.main.R | 144 ++++++++------------------ R/plt.txt.R | 14 +- R/zzz.R | 95 ++++++++++------- inst/doc/intro.R | 3 inst/doc/intro.Rmd | 19 ++- inst/doc/intro.html | 261 ++++++++++++++++++++++++++--------------------- man/Plot.Rd | 45 ++++---- man/STL.Rd | 11 +- man/pivot.Rd | 2 man/reshape_long.Rd | 2 man/reshape_wide.Rd | 2 vignettes/intro.Rmd | 19 ++- 19 files changed, 643 insertions(+), 475 deletions(-)
Title: Model Consistent Lasso Estimation Through the Bootstrap
Description: Implements the bolasso algorithm for consistent variable selection
and estimation accuracy. Includes support for many parallel backends via the
future package. For details see: Bach (2008),
'Bolasso: model consistent Lasso estimation through the bootstrap',
<doi:10.48550/arXiv.0804.1302>.
Author: Daniel Molitor [aut, cre]
Maintainer: Daniel Molitor <molitdj97@gmail.com>
Diff between bolasso versions 0.2.0 dated 2022-05-10 and 0.3.0 dated 2024-12-08
bolasso-0.2.0/bolasso/build |only bolasso-0.2.0/bolasso/man/selected_vars.Rd |only bolasso-0.3.0/bolasso/DESCRIPTION | 20 bolasso-0.3.0/bolasso/LICENSE | 4 bolasso-0.3.0/bolasso/MD5 | 57 bolasso-0.3.0/bolasso/NAMESPACE | 13 bolasso-0.3.0/bolasso/NEWS.md | 63 bolasso-0.3.0/bolasso/R/bolasso.R | 121 + bolasso-0.3.0/bolasso/R/bolasso_fast.R |only bolasso-0.3.0/bolasso/R/data.R |only bolasso-0.3.0/bolasso/R/methods.R | 79 - bolasso-0.3.0/bolasso/R/plot.R |only bolasso-0.3.0/bolasso/R/tidy.R | 36 bolasso-0.3.0/bolasso/R/utils.R | 314 +++- bolasso-0.3.0/bolasso/README.md | 692 +++++++--- bolasso-0.3.0/bolasso/data |only bolasso-0.3.0/bolasso/inst/REFERENCES.bib | 28 bolasso-0.3.0/bolasso/man/bolasso.Rd | 223 +-- bolasso-0.3.0/bolasso/man/figures/README-unnamed-chunk-10-1.png |only bolasso-0.3.0/bolasso/man/figures/README-unnamed-chunk-11-1.png |only bolasso-0.3.0/bolasso/man/figures/README-unnamed-chunk-12-1.png |only bolasso-0.3.0/bolasso/man/figures/README-unnamed-chunk-13-1.png |only bolasso-0.3.0/bolasso/man/figures/README-unnamed-chunk-16-1.png |only bolasso-0.3.0/bolasso/man/figures/README-unnamed-chunk-7-1.png |binary bolasso-0.3.0/bolasso/man/plot.bolasso.Rd |only bolasso-0.3.0/bolasso/man/plot_selected_variables.Rd |only bolasso-0.3.0/bolasso/man/plot_selection_thresholds.Rd |only bolasso-0.3.0/bolasso/man/reexports.Rd |only bolasso-0.3.0/bolasso/man/selected_variables.Rd |only bolasso-0.3.0/bolasso/man/selection_thresholds.Rd |only bolasso-0.3.0/bolasso/man/tidy.bolasso.Rd |only bolasso-0.3.0/bolasso/man/transactions.Rd |only bolasso-0.3.0/bolasso/tests/testthat.R | 8 bolasso-0.3.0/bolasso/tests/testthat/test-main.R | 50 bolasso-0.3.0/bolasso/tests/testthat/test-model-matrix.R | 66 bolasso-0.3.0/bolasso/tests/testthat/test-tidy.R | 24 bolasso-0.3.0/bolasso/tests/testthat/test-translate.R | 102 - bolasso-0.3.0/bolasso/tests/testthat/test-utils.R | 80 - bolasso-0.3.0/bolasso/tests/testthat/test-validation.R | 47 39 files changed, 1342 insertions(+), 685 deletions(-)
Title: 'pinp' is not 'PNAS'
Description: A 'PNAS'-alike style for 'rmarkdown', derived from the 'Proceedings of the
National Academy of Sciences of the United States of America' ('PNAS') 'LaTeX' style,
and adapted for use with 'markdown' and 'pandoc'.
Author: Dirk Eddelbuettel [aut, cre] ,
James Joseph Balamuta [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between pinp versions 0.0.10 dated 2020-10-01 and 0.0.11 dated 2024-12-08
ChangeLog | 50 ++++++++++++++++++++ DESCRIPTION | 27 ++++++---- MD5 | 22 ++++---- R/pinp.R | 4 - README.md | 12 ++-- build/vignette.rds |binary inst/NEWS.Rd | 8 +++ inst/doc/pinp.Rmd | 6 +- inst/doc/pinp.pdf |binary inst/rmarkdown/templates/pdf/resources/template.tex | 2 man/pinp.Rd | 4 - vignettes/pinp.Rmd | 6 +- 12 files changed, 101 insertions(+), 40 deletions(-)
Title: Transforms Institutional Data into Text Files for IPEDS
Automated Import/Upload
Description: Starting from user-supplied institutional data, these scripts
transform, aggregate, and reshape the information to produce
key-value pair data files that are able to be uploaded to IPEDS (Integrated Postsecondary Education Data System)
through their submission portal <https://surveys.nces.ed.gov/ipeds/>. Starting data specifications can be found in the vignettes.
Final files are saved locally to a location of the user's choice.
User-friendly readable files can also be produced for purposes of data review and validation.
Author: Alison Lanski [aut, cre],
Shiloh Fling [aut]
Maintainer: Alison Lanski <alanski@nd.edu>
Diff between IPEDSuploadables versions 2.9.0 dated 2024-08-29 and 2.10.0 dated 2024-12-08
DESCRIPTION | 6 MD5 | 247 +++++++++++++-------------- NAMESPACE | 1 NEWS.md | 9 R/create_dummy_data_ef1.R | 2 R/make_com_part_A.R | 2 R/make_com_part_B.R | 2 R/make_com_part_C.R | 2 R/make_com_part_D.R | 2 R/make_com_part_E.R | 2 R/make_e1d_part_A.R | 2 R/make_e1d_part_B.R | 2 R/make_e1d_part_C.R | 2 R/make_e1d_part_D.R | 2 R/make_e1d_part_E.R | 2 R/make_e1d_part_F.R | 2 R/make_ef1_part_A.R | 2 R/make_ef1_part_B.R | 2 R/make_ef1_part_C.R | 2 R/make_ef1_part_D.R | 2 R/make_ef1_part_E.R | 2 R/make_ef1_part_F.R | 2 R/make_ef1_part_G.R | 2 R/make_ef1_part_H.R | 2 R/make_gr200.R | 2 R/make_gr_part_B.R | 2 R/make_gr_part_C.R | 2 R/make_gr_part_E.R | 2 R/make_hr_part_A1.R | 2 R/make_hr_part_A2.R | 2 R/make_hr_part_B1.R | 2 R/make_hr_part_B2.R | 2 R/make_hr_part_B3.R | 2 R/make_hr_part_D1.R | 2 R/make_hr_part_D2.R | 2 R/make_hr_part_D3.R | 2 R/make_hr_part_D4.R | 2 R/make_hr_part_G1.R | 2 R/make_hr_part_G2.R | 2 R/make_hr_part_H1.R | 2 R/make_hr_part_H2.R | 2 R/make_om_part_A.R | 2 R/make_om_part_B.R | 2 R/make_om_part_C.R | 2 R/make_om_part_D.R | 2 R/prep_com_data_frame.R | 2 R/prep_ef1_data_frame.R | 2 R/prep_hr_data_frame.R | 2 R/prep_om_awards.R | 2 R/prep_om_data_frame.R | 12 + README.md | 23 +- data/specs_OM.rda |binary inst/WORDLIST |only inst/doc/howto_overall_ipedsuploadables.Rmd | 4 inst/doc/howto_overall_ipedsuploadables.html | 13 - inst/doc/setup_for_12monthenrollment.R | 6 inst/doc/setup_for_12monthenrollment.Rmd | 4 inst/doc/setup_for_completions.R | 12 - inst/doc/setup_for_completions.Rmd | 10 - inst/doc/setup_for_fallenrollment.R | 6 inst/doc/setup_for_fallenrollment.Rmd | 4 inst/doc/setup_for_gr.R | 6 inst/doc/setup_for_gr.Rmd | 4 inst/doc/setup_for_gr200.R | 6 inst/doc/setup_for_gr200.Rmd | 4 inst/doc/setup_for_hr.R | 6 inst/doc/setup_for_hr.Rmd | 4 inst/doc/setup_for_om.R | 6 inst/doc/setup_for_om.Rmd | 4 inst/doc/setup_for_om.html | 2 man/create_dummy_data_ef1.Rd | 2 man/make_com_part_A.Rd | 2 man/make_com_part_B.Rd | 2 man/make_com_part_C.Rd | 2 man/make_com_part_D.Rd | 2 man/make_com_part_E.Rd | 2 man/make_e1d_part_A.Rd | 2 man/make_e1d_part_B.Rd | 2 man/make_e1d_part_C.Rd | 2 man/make_e1d_part_D.Rd | 2 man/make_e1d_part_E.Rd | 2 man/make_e1d_part_F.Rd | 2 man/make_ef1_part_A.Rd | 2 man/make_ef1_part_B.Rd | 2 man/make_ef1_part_C.Rd | 2 man/make_ef1_part_D.Rd | 2 man/make_ef1_part_E.Rd | 2 man/make_ef1_part_F.Rd | 2 man/make_ef1_part_G.Rd | 2 man/make_ef1_part_H.Rd | 2 man/make_gr200.Rd | 2 man/make_gr_part_B.Rd | 2 man/make_gr_part_C.Rd | 2 man/make_gr_part_E.Rd | 2 man/make_hr_part_A1.Rd | 2 man/make_hr_part_A2.Rd | 2 man/make_hr_part_B1.Rd | 2 man/make_hr_part_B2.Rd | 2 man/make_hr_part_B3.Rd | 2 man/make_hr_part_D1.Rd | 2 man/make_hr_part_D2.Rd | 2 man/make_hr_part_D3.Rd | 2 man/make_hr_part_D4.Rd | 2 man/make_hr_part_G1.Rd | 2 man/make_hr_part_G2.Rd | 2 man/make_hr_part_H1.Rd | 2 man/make_hr_part_H2.Rd | 2 man/make_om_part_A.Rd | 2 man/make_om_part_B.Rd | 2 man/make_om_part_C.Rd | 2 man/make_om_part_D.Rd | 2 man/prep_com_data_frame.Rd | 2 man/prep_ef1_data_frame.Rd | 2 man/prep_hr_data_frame.Rd | 2 man/prep_om_awards.Rd | 2 man/prep_om_data_frame.Rd | 2 tests/testthat/test-prep-scripts.R | 7 vignettes/howto_overall_ipedsuploadables.Rmd | 4 vignettes/setup_for_12monthenrollment.Rmd | 4 vignettes/setup_for_completions.Rmd | 10 - vignettes/setup_for_fallenrollment.Rmd | 4 vignettes/setup_for_gr.Rmd | 4 vignettes/setup_for_gr200.Rmd | 4 vignettes/setup_for_hr.Rmd | 4 vignettes/setup_for_om.Rmd | 4 125 files changed, 316 insertions(+), 310 deletions(-)
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Title: Sparse Matrix C++ Classes Including Sparse Cholesky LDL
Decomposition of Symmetric Matrices
Description: 'C++' classes for sparse matrix methods including implementation of sparse LDL decomposition of symmetric matrices and solvers described by Timothy A. Davis (2016)
<https://fossies.org/linux/SuiteSparse/LDL/Doc/ldl_userguide.pdf>. Provides a set of C++ classes for basic sparse
matrix specification and linear algebra, and a class to implement sparse LDL decomposition and solvers. See <https://github.com/samuel-watson/SparseChol>
for details.
Author: Sam Watson [aut, cre],
Timothy A. Davis [aut, ctb]
Maintainer: Sam Watson <S.I.Watson@bham.ac.uk>
Diff between SparseChol versions 0.3.1 dated 2024-01-08 and 0.3.2 dated 2024-12-08
DESCRIPTION | 8 ++-- MD5 | 15 ++++---- README.md |only build/partial.rdb |binary inst/include/sparsematrix.h | 78 +++++++++++++++++++++++++++--------------- man/LDL_Cholesky.Rd | 36 +++++++++---------- man/LL_Cholesky.Rd | 36 +++++++++---------- man/dense_to_sparse.Rd | 48 +++++++++++++------------- man/sparse_chol_crs.Rd | 80 ++++++++++++++++++++++---------------------- 9 files changed, 162 insertions(+), 139 deletions(-)
Title: Inference for Panel Partially Observed Markov Processes
Description: Data analysis based on panel partially-observed Markov process (PanelPOMP) models. To implement such models, simulate them and fit them to panel data, 'panelPomp' extends some of the facilities provided for time series data by the 'pomp' package. Implemented methods include filtering (panel particle filtering) and maximum likelihood estimation (Panel Iterated Filtering) as proposed in Breto, Ionides and King (2020) "Panel Data Analysis via Mechanistic Models" <doi:10.1080/01621459.2019.1604367>.
Author: Carles Breto [aut] ,
Edward L. Ionides [aut] ,
Aaron A. King [aut] ,
Jesse Wheeler [aut, cre] ,
Aaron Abkemeier [ctb]
Maintainer: Jesse Wheeler <jeswheel@umich.edu>
Diff between panelPomp versions 1.4 dated 2024-09-12 and 1.5.0.0 dated 2024-12-08
DESCRIPTION | 18 +++-- MD5 | 51 ++++++++------ NAMESPACE | 1 R/panelMeasles.R |only R/panelPomp.R | 4 - R/panelPomp_methods.R | 147 ++++++++++++++++++------------------------ R/sysdata.rda |only R/twentycities.R |only R/uk_measles.R |only README.md | 7 -- build/partial.rdb |binary build/vignette.rds |binary data |only inst/CITATION | 3 inst/NEWS | 23 ++++++ inst/NEWS.Rd | 19 +++++ inst/doc/getting-started.html | 2 man/contacts.Rd | 1 man/macros/cite.Rd | 4 + man/panelGompertz.Rd | 1 man/panelMeasles.Rd |only man/panelPomp-package.Rd | 5 + man/panelPomp.Rd | 4 - man/panelPomp_methods.Rd | 15 ++-- man/panelRandomWalk.Rd | 3 man/twentycities.Rd |only man/uk_measles.Rd |only tests/panelMeasles.R |only tests/panelMeasles.Rout.save |only tests/panelPomp.R | 7 +- tests/panelPomp.Rout.save | 7 +- 31 files changed, 188 insertions(+), 134 deletions(-)
Title: Estimate Orientation of an Inertial Measurement Unit
Description: Estimate the orientation of an inertial measurement unit
(IMU) with a 3-axis accelerometer and a 3-axis gyroscope using a
complementary filter. 'imuf' takes an IMU's accelerometer and gyroscope
readings, time duration, its initial orientation, and a gain factor as
inputs, and returns an estimate of the IMU's final orientation.
Author: Felix Chan [aut, cre, cph]
Maintainer: Felix Chan <chanfelix@gmail.com>
Diff between imuf versions 0.3.0 dated 2024-11-06 and 0.4.0 dated 2024-12-08
DESCRIPTION | 11 +++++--- MD5 | 27 +++++++++++++------- NAMESPACE | 11 ++++---- NEWS.md | 6 ++++ R/RcppExports.R | 28 ++++++++++++++++++++- R/walking_shin_1.R |only README.md | 8 ++++++ build |only data |only inst |only man/compUpdate.Rd | 60 +++++++++++++++++++++++---------------------- man/rotV.Rd |only man/walking_shin_1.Rd |only src/RcppExports.cpp | 13 +++++++++ src/imuf.cpp | 38 +++++++++++++++++++++++++++- tests/testthat/test-imuf.R | 7 +++++ vignettes |only 17 files changed, 160 insertions(+), 49 deletions(-)
Title: Mediation, Moderation and Moderated-Mediation After Model
Fitting
Description: Computes indirect effects, conditional effects, and conditional
indirect effects in a structural equation model or path model after model
fitting, with no need to define any user parameters or label any paths in
the model syntax, using the approach presented in Cheung and Cheung
(2023) <doi:10.3758/s13428-023-02224-z>. Can also form bootstrap
confidence intervals by doing bootstrapping only once and reusing the
bootstrap estimates in all subsequent computations. Supports bootstrap
confidence intervals for standardized (partially or completely) indirect
effects, conditional effects, and conditional indirect effects as described
in Cheung (2009) <doi:10.3758/BRM.41.2.425> and Cheung, Cheung, Lau, Hui,
and Vong (2022) <doi:10.1037/hea0001188>. Model fitting can be done by
structural equation modeling using lavaan() or regression using lm().
Author: Shu Fai Cheung [aut, cre] ,
Sing-Hang Cheung [aut]
Maintainer: Shu Fai Cheung <shufai.cheung@gmail.com>
Diff between manymome versions 0.2.4 dated 2024-10-04 and 0.2.5 dated 2024-12-08
DESCRIPTION | 6 MD5 | 84 +-- NAMESPACE | 1 NEWS.md | 61 ++ R/boot2est_lavaan.R | 53 + R/boot2est_lm.R | 5 R/cond_indirect.R | 26 R/helpers.R |only R/merge_mod_levels.R | 8 R/print_cond_indirect_effect.R | 545 +++++++++++++++----- R/print_indirect_list.R | 5 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/do_boot.Rmd | 2 inst/doc/do_boot.html | 4 inst/doc/do_mc.Rmd | 2 inst/doc/do_mc.html | 4 inst/doc/do_mc_lavaan_mi.Rmd | 2 inst/doc/do_mc_lavaan_mi.html | 4 inst/doc/manymome.Rmd | 2 inst/doc/manymome.html | 4 inst/doc/med_lav.Rmd | 2 inst/doc/med_lav.html | 4 inst/doc/med_lm.Rmd | 2 inst/doc/med_lm.html | 4 inst/doc/mod_levels.html | 4 inst/doc/mome_lm.Rmd | 2 inst/doc/mome_lm.html | 4 inst/extdata/mi_test_data.RData |binary man/cond_indirect.Rd | 5 man/indirect_effects_from_list.Rd | 5 man/print.cond_indirect_effects.Rd | 69 ++ tests/testthat/test_cond_indirect_effects_lm_kway.R | 2 tests/testthat/test_cond_indirect_effects_to_df.R |only tests/testthat/test_merge_mod_levels_one_level.R |only tests/testthat/test_one_y.R |only vignettes/articles/med_mg.Rmd | 4 vignettes/do_boot.Rmd | 2 vignettes/do_mc.Rmd | 2 vignettes/do_mc_lavaan_mi.Rmd | 2 vignettes/manymome.Rmd | 2 vignettes/med_lav.Rmd | 2 vignettes/med_lm.Rmd | 2 vignettes/mome_lm.Rmd | 2 45 files changed, 722 insertions(+), 219 deletions(-)
Title: Topological Data Analysis: Mapper Algorithm
Description: The Mapper algorithm from Topological Data Analysis, the steps are as follows 1. Define a filter (lens) function on the data. 2. Perform clustering within each level set. 3. Generate a complex from the clustering results.
Author: ChiChien Wang [aut, cre, trl],
Paul Pearson [ctb],
Daniel Muellner [ctb],
Gurjeet Singh [ctb]
Maintainer: ChiChien Wang <kennywang2003@gmail.com>
Diff between MapperAlgo versions 1.0 dated 2024-09-18 and 1.0.1 dated 2024-12-08
MapperAlgo-1.0.1/MapperAlgo/DESCRIPTION | 11 MapperAlgo-1.0.1/MapperAlgo/MD5 | 29 + MapperAlgo-1.0.1/MapperAlgo/NAMESPACE | 7 MapperAlgo-1.0.1/MapperAlgo/R/Cluster.R |only MapperAlgo-1.0.1/MapperAlgo/R/ConvertLevelsets.R |only MapperAlgo-1.0.1/MapperAlgo/R/Cover.R |only MapperAlgo-1.0.1/MapperAlgo/R/MapperAlgo.R | 174 ---------- MapperAlgo-1.0.1/MapperAlgo/R/SimplicialComplex.R |only MapperAlgo-1.0.1/MapperAlgo/README.md | 54 +++ MapperAlgo-1.0.1/MapperAlgo/man/MapperAlgo.Rd | 94 +---- MapperAlgo-1.0.1/MapperAlgo/man/cluster_cutoff_at_first_empty_bin.Rd | 2 MapperAlgo-1.0.1/MapperAlgo/man/cover_points.Rd | 2 MapperAlgo-1.0.1/MapperAlgo/man/figures |only MapperAlgo-1.0.1/MapperAlgo/man/find_best_k_for_kmeans.Rd |only MapperAlgo-1.0.1/MapperAlgo/man/perform_clustering.Rd | 10 MapperAlgo-1.0.1/MapperAlgo/man/simplcial_complex.Rd |only MapperAlgo-1.0.1/MapperAlgo/man/to_lsfi.Rd |only MapperAlgo-1.0.1/MapperAlgo/man/to_lsmi.Rd |only MapperAlgo-1.0/MapperAlgo/man/lsfi_from_lsmi.Rd |only MapperAlgo-1.0/MapperAlgo/man/lsmi_from_lsfi.Rd |only 20 files changed, 138 insertions(+), 245 deletions(-)
Title: Make Dealing with Dates a Little Easier
Description: Functions to work with date-times and time-spans: fast and
user friendly parsing of date-time data, extraction and updating of
components of a date-time (years, months, days, hours, minutes, and
seconds), algebraic manipulation on date-time and time-span objects.
The 'lubridate' package has a consistent and memorable syntax that
makes working with dates easy and fun.
Author: Vitalie Spinu [aut, cre],
Garrett Grolemund [aut],
Hadley Wickham [aut],
Davis Vaughan [ctb],
Ian Lyttle [ctb],
Imanuel Costigan [ctb],
Jason Law [ctb],
Doug Mitarotonda [ctb],
Joseph Larmarange [ctb],
Jonathan Boiser [ctb],
Chel Hee Lee [ctb]
Maintainer: Vitalie Spinu <spinuvit@gmail.com>
Diff between lubridate versions 1.9.3 dated 2023-09-27 and 1.9.4 dated 2024-12-08
DESCRIPTION | 10 MD5 | 67 ++-- NEWS.md | 37 +- R/Dates.r | 2 R/POSIXt.r | 2 R/accessors-date.R | 2 R/durations.r | 2 R/format_ISO8601.r | 10 R/intervals.r | 4 R/ops-m+.r | 2 R/periods.r | 2 R/pretty.r | 6 R/tzdir.R | 8 README.md | 66 ++-- build/vignette.rds |binary inst/WORDLIST |only inst/doc/lubridate.Rmd | 4 inst/doc/lubridate.html | 465 +++++++++++++++++++--------------- man/DateTimeUpdate.Rd | 2 man/Duration-class.Rd | 2 man/Period-class.Rd | 2 man/date.Rd | 2 man/date_utils.Rd | 2 man/force_tz.Rd | 2 man/format_ISO8601.Rd | 10 man/format_ISO8601_precision_check.Rd | 6 man/interval.Rd | 4 man/mplus.Rd | 2 man/posix_utils.Rd | 2 man/pretty_dates.Rd | 6 tests/testthat/_snaps/vctrs.md | 120 +++++--- tests/testthat/test-format_ISO8601.R | 16 - tests/testthat/test-parsers.R | 4 tests/testthat/test-periods.R | 2 vignettes/lubridate.Rmd | 4 35 files changed, 485 insertions(+), 392 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management
system with support for the Structured Query Language (SQL). This
package includes all of DuckDB and an R Database Interface (DBI)
connector.
Author: Hannes Muehleisen [aut] ,
Mark Raasveldt [aut] ,
Kirill Mueller [cre] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrocher [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckdb versions 1.1.3 dated 2024-11-21 and 1.1.3-1 dated 2024-12-08
DESCRIPTION | 9 +- MD5 | 83 +++++++++++++-------------- NEWS.md | 27 ++++++++ R/Driver.R | 19 +++++- R/cpp11.R | 8 +- R/dbConnect__duckdb_driver.R | 4 - R/dbSendQuery__duckdb_connection_character.R | 21 ++++++ R/rethrow-gen.R | 8 +- R/zzz.R | 2 cleanup | 6 + inst/include/cpp11.hpp | 4 - inst/include/cpp11/R.hpp | 7 +- inst/include/cpp11/altrep.hpp | 46 +------------- inst/include/cpp11/as.hpp | 4 - inst/include/cpp11/attribute_proxy.hpp | 4 - inst/include/cpp11/data_frame.hpp | 4 - inst/include/cpp11/declarations.hpp | 15 +--- inst/include/cpp11/doubles.hpp | 6 - inst/include/cpp11/environment.hpp | 18 ----- inst/include/cpp11/external_pointer.hpp | 7 +- inst/include/cpp11/function.hpp | 4 - inst/include/cpp11/integers.hpp | 6 - inst/include/cpp11/list.hpp | 6 - inst/include/cpp11/list_of.hpp | 4 - inst/include/cpp11/logicals.hpp | 6 - inst/include/cpp11/matrix.hpp | 4 - inst/include/cpp11/named_arg.hpp | 4 - inst/include/cpp11/protect.hpp | 21 +----- inst/include/cpp11/r_bool.hpp | 4 - inst/include/cpp11/r_string.hpp | 4 - inst/include/cpp11/r_vector.hpp | 13 ++-- inst/include/cpp11/raws.hpp | 6 - inst/include/cpp11/sexp.hpp | 4 - inst/include/cpp11/strings.hpp | 6 - man/duckdb.Rd | 15 +++- src/cpp11.cpp | 16 ++--- src/database.cpp | 14 +++- src/duckdb.tar.xz |binary src/include/rapi.hpp | 6 + src/register.cpp | 42 +++++++++++++ src/statement.cpp | 28 ++++++--- src/types.cpp | 5 - tests/testthat/test-scan.R |only 43 files changed, 298 insertions(+), 222 deletions(-)
Title: Trajectory Miner: a Sequence Analysis Toolkit
Description: Set of sequence analysis tools for manipulating, describing and rendering categorical sequences, and more generally mining sequence data in the field of social sciences. Although this sequence analysis package is primarily intended for state or event sequences that describe time use or life courses such as family formation histories or professional careers, its features also apply to many other kinds of categorical sequence data. It accepts many different sequence representations as input and provides tools for converting sequences from one format to another. It offers several functions for describing and rendering sequences, for computing distances between sequences with different metrics (among which optimal matching), original dissimilarity-based analysis tools, and functions for extracting the most frequent event subsequences and identifying the most discriminating ones among them. A user's guide can be found on the TraMineR web page.
Author: Alexis Gabadinho [aut, cph],
Matthias Studer [aut, cph] ,
Nicolas Mueller [aut],
Reto Buergin [aut] ,
Pierre-Alexandre Fonta [aut],
Gilbert Ritschard [aut, cre, cph]
Maintainer: Gilbert Ritschard <gilbert.ritschard@unige.ch>
Diff between TraMineR versions 2.2-10 dated 2024-05-21 and 2.2-11 dated 2024-12-08
TraMineR-2.2-10/TraMineR/data/ex1.rda |only TraMineR-2.2-10/TraMineR/data/ex1.txt.gz |only TraMineR-2.2-10/TraMineR/data/ex2.rda |only TraMineR-2.2-10/TraMineR/data/famform.rda |only TraMineR-2.2-11/TraMineR/DESCRIPTION | 8 TraMineR-2.2-11/TraMineR/MD5 | 28 TraMineR-2.2-11/TraMineR/NEWS | 17 TraMineR-2.2-11/TraMineR/R/dissrep.R | 11 TraMineR-2.2-11/TraMineR/R/seqecreate.R | 345 +++++----- TraMineR-2.2-11/TraMineR/data/ex1.R |only TraMineR-2.2-11/TraMineR/data/ex1.txt |only TraMineR-2.2-11/TraMineR/data/ex2.R |only TraMineR-2.2-11/TraMineR/data/famform.R |only TraMineR-2.2-11/TraMineR/inst/NEWS.Rd | 24 TraMineR-2.2-11/TraMineR/inst/doc/TraMineR-state-sequence.pdf |binary TraMineR-2.2-11/TraMineR/man/TraMineR-package.Rd | 2 TraMineR-2.2-11/TraMineR/man/seqplot.Rd | 2 TraMineR-2.2-11/TraMineR/man/seqstatl.Rd | 2 TraMineR-2.2-11/TraMineR/src/tmrsequence.cpp | 3 19 files changed, 255 insertions(+), 187 deletions(-)
Title: Adrian Dusa's Miscellaneous
Description: Contains functions used across packages 'DDIwR', 'QCA' and 'venn'.
Interprets and translates, factorizes and negates SOP - Sum of Products
expressions, for both binary and multi-value crisp sets, and extracts
information (set names, set values) from those expressions. Other functions
perform various other checks if possibly numeric (even if all numbers reside
in a character vector) and coerce to numeric, or check if the numbers are
whole. It also offers, among many others, a highly versatile recoding
routine and some more flexible alternatives to the base functions 'with()'
and 'within()'.
SOP simplification functions in this package use related minimization from
package 'QCA', which is recommended to be installed despite not being listed
in the Imports field, due to circular dependency issues.
Author: Adrian Dusa [aut, cre, cph]
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between admisc versions 0.36 dated 2024-09-11 and 0.37 dated 2024-12-08
DESCRIPTION | 15 - MD5 | 139 +++++++------ NAMESPACE | 4 R/asNumeric.R | 41 ++-- R/asSOP.R | 30 ++- R/betweenQuotes.R | 28 ++ R/brackets.R | 73 ++----- R/change.R | 54 ++--- R/checkMV.R | 52 ++--- R/checkSubset.R | 26 ++ R/checkValid.R | 33 ++- R/classify.R | 26 ++ R/coerceMode.R | 33 ++- R/combnk.R | 55 +++-- R/compute.R | 74 ++----- R/dimnames.R | 46 +++- R/equality.R | 42 ++-- R/expand.R | 87 ++------ R/export.R | 92 ++++++--- R/factorize.R | 141 ++------------ R/finvert.R | 41 +++- R/frelevel.R | 54 +++-- R/getInfo.R | 230 +++++++++++------------ R/getLevels.R | 107 ++++++---- R/getMatrix.R | 35 ++- R/getName.R | 65 ++---- R/hclr.R | 26 ++ R/inside.R | 44 ++-- R/intersection.R | 89 ++------ R/invert.R | 80 ++------ R/listRDA.R | 26 ++ R/mvSOP.R | 48 ++-- R/negate.R | 90 ++------- R/numdec.R | 72 +++---- R/objRDA.R | 26 ++ R/onLoad.R | 27 ++ R/overwrite.R | 27 ++ R/pad.R | 29 ++ R/permutations.R | 48 +++- R/possibleNumeric.R | 52 +++-- R/prettyString.R | 43 ++-- R/prettyTable.R | 38 ++- R/print.R | 99 ++------- R/recode.R | 124 +++--------- R/recreate.R | 83 ++------ R/reload.R | 29 ++ R/replaceText.R | 69 ++---- R/scan.clipboard.R | 29 ++ R/simplify.R | 60 ++---- R/sortExpressions.R | 58 ++++- R/stopError.R | 31 ++- R/string.R | 153 ++------------- R/tagged.R | 37 ++- R/tilde.R | 32 ++- R/translate.R | 201 +++----------------- R/tryCatchWEM.R | 29 ++ R/unicode.R | 33 ++- R/uninstall.R | 26 ++ R/unload.R | 30 ++- R/update.R |only R/using.R | 158 +++++---------- R/validateNames.R | 55 +++-- R/verify.R | 38 ++- R/wholeNumeric.R | 38 ++- R/write.clipboard.R | 27 ++ R/writePrimeimp.R | 38 ++- build/partial.rdb |binary inst/ChangeLog | 440 ++++++++++++++++++++++---------------------- man/admisc_package.Rd | 4 man/export.Rd | 14 - src/registerDynamicSymbol.c | 6 71 files changed, 2229 insertions(+), 2100 deletions(-)
Title: Regularized Joint Assignment Forest with Treatment Arm
Clustering
Description: Personalized assignment to one of many treatment arms via regularized and clustered joint assignment forests as described in Ladhania, Spiess, Ungar, and Wu (2023) <doi:10.48550/arXiv.2311.00577>. The algorithm pools information across treatment arms: it considers a regularized forest-based assignment algorithm based on greedy recursive partitioning that shrinks effect estimates across arms; and it incorporates a clustering scheme that combines treatment arms with consistently similar outcomes.
Author: Wenbo Wu [aut, cph] ,
Xinyi Zhang [aut, cre, cph] ,
Jann Spiess [aut, cph] ,
Rahul Ladhania [aut, cph]
Maintainer: Xinyi Zhang <zhang.xinyi@nyu.edu>
Diff between rjaf versions 0.1.0 dated 2024-11-11 and 0.1.1 dated 2024-12-08
DESCRIPTION | 6 ++--- MD5 | 14 ++++++------ R/RcppExports.R | 4 +-- R/rjaf.R | 34 +++++++++++++++--------------- man/rjaf.Rd | 18 ++++++++-------- src/RcppExports.cpp | 8 +++---- src/rjaf.cpp | 50 ++++++++++++++++++++++----------------------- tests/testthat/test-rjaf.R | 6 +---- 8 files changed, 69 insertions(+), 71 deletions(-)
Title: Measuring Ecosystem Multi-Functionality and Its Decomposition
Description: Provide simple functions to (i) compute a class of
multi-functionality measures for a single ecosystem for given
function weights, (ii) decompose gamma multi-functionality
for pairs of ecosystems and K ecosystems (K can be greater than 2)
into a within-ecosystem component (alpha multi-functionality)
and an among-ecosystem component (beta multi-functionality).
In each case, the correlation between functions can be corrected for.
Based on biodiversity and ecosystem function data, this software
also facilitates graphics for assessing biodiversity-ecosystem
functioning relationships across scales.
Author: Anne Chao [aut, cre],
Chun-Yu Liu [ctb],
KaiHsiang Hu [ctb]
Maintainer: Anne Chao <chao@stat.nthu.edu.tw>
Diff between MF.beta4 versions 1.1.0 dated 2024-11-03 and 1.1.1 dated 2024-12-08
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS | 5 ++++- build/vignette.rds |binary inst/doc/Introduction.Rnw | 2 +- inst/doc/Introduction.pdf |binary man/MF.beta4-package.Rd | 10 ++++++---- vignettes/Introduction.Rnw | 2 +- vignettes/mypaper.pdf |binary 9 files changed, 23 insertions(+), 18 deletions(-)
Title: "Finding Groups in Data": Cluster Analysis Extended Rousseeuw et
al.
Description: Methods for Cluster analysis. Much extended the original from
Peter Rousseeuw, Anja Struyf and Mia Hubert,
based on Kaufman and Rousseeuw (1990) "Finding Groups in Data".
Author: Martin Maechler [aut, cre] ,
Peter Rousseeuw [aut] ,
Anja Struyf [aut] ,
Mia Hubert [aut] ,
Kurt Hornik [trl, ctb] ,
<https://orcid.org/0000-0003-4198-9911>),
Matthias Studer [ctb],
Pierre Roudier [ctb],
Juan Gonzalez [ctb],
Kamil Kozlowski [ctb],
Er [...truncated...]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between cluster versions 2.1.6 dated 2023-12-01 and 2.1.7 dated 2024-12-08
cluster-2.1.6/cluster/src/daisy.f |only cluster-2.1.6/cluster/src/dysta.f |only cluster-2.1.7/cluster/DESCRIPTION | 9 +++-- cluster-2.1.7/cluster/MD5 | 40 ++++++++++++------------- cluster-2.1.7/cluster/R/agnes.q | 4 +- cluster-2.1.7/cluster/R/daisy.q | 2 - cluster-2.1.7/cluster/R/mona.q | 4 +- cluster-2.1.7/cluster/R/plotpart.q | 4 +- cluster-2.1.7/cluster/build/partial.rdb |binary cluster-2.1.7/cluster/inst/NEWS.Rd | 28 +++++++++++++++++ cluster-2.1.7/cluster/man/pam.Rd | 16 +++++++--- cluster-2.1.7/cluster/po/R-cluster.pot | 2 - cluster-2.1.7/cluster/src/clara.c | 5 +++ cluster-2.1.7/cluster/src/cluster.h | 24 ++++----------- cluster-2.1.7/cluster/src/daisy.c |only cluster-2.1.7/cluster/src/dysta.c |only cluster-2.1.7/cluster/src/fanny.c | 24 +++++++-------- cluster-2.1.7/cluster/src/init.c | 18 +++-------- cluster-2.1.7/cluster/src/mona.c | 2 - cluster-2.1.7/cluster/src/pam.c | 3 - cluster-2.1.7/cluster/src/twins.c | 8 +---- cluster-2.1.7/cluster/tests/fanny-ex.R | 14 +++++++- cluster-2.1.7/cluster/tests/fanny-ex.Rout.save | 24 ++++++++++----- 23 files changed, 136 insertions(+), 95 deletions(-)