Title: Explore and Import 'Metopio' Health Atlas Data and Spatial
Layers
Description: Allows for painless use of the 'Metopio' health atlas APIs
<https://metopio.com/how-it-works/atlas/> to explore and import data.
'Metopio' health atlases store open public health data. See what topics
(or indicators) are available among specific populations, periods, and
geographic layers. Download relevant data along with geographic
boundaries or point datasets. Spatial datasets are returned as 'sf'
objects.
Author: Ryan Zomorrodi [aut, cre, cph]
Maintainer: Ryan Zomorrodi <rzomor2@uic.edu>
Diff between healthatlas versions 0.1.0 dated 2024-09-13 and 0.1.1 dated 2024-12-17
DESCRIPTION | 10 MD5 | 51 ++-- NEWS.md | 9 R/ha_coverage.R | 43 +--- R/ha_data.R | 94 +++----- R/ha_getset.R | 3 R/ha_layer.R | 44 +--- R/ha_point_layer.R | 53 +--- R/ha_stratifications.R | 13 - R/ha_subcategories.R | 20 - R/ha_topics.R | 30 +- R/helpers.R | 55 +++-- README.md | 79 ++++--- inst/doc/typical_usage.R | 41 +++ inst/doc/typical_usage.Rmd | 71 +++++- inst/doc/typical_usage.html | 333 ++++++++++++++++++++++--------- man/figures/README-unnamed-chunk-8-1.png |binary man/figures/README-unnamed-chunk-9-1.png |only man/ha_data.Rd | 15 - tests/testthat/helpers.R | 2 tests/testthat/test-ha_coverage.R | 12 - tests/testthat/test-ha_data.R | 43 ---- tests/testthat/test-ha_layer.R | 8 tests/testthat/test-ha_point_layer.R | 8 tests/testthat/test-ha_subcategories.R | 4 tests/testthat/test-ha_topics.R | 8 vignettes/typical_usage.Rmd | 71 +++++- 27 files changed, 647 insertions(+), 473 deletions(-)
Title: Extracts Phylogenetic Island Community Data from Phylogenetic
Trees
Description: Extracts colonisation and branching times of island
species to be used for analysis in the R package 'DAISIE'. It uses
phylogenetic and endemicity data to extract the separate island colonists
and store them.
Author: Joshua W. Lambert [aut, cre] ,
Luis Valente [aut] ,
Pedro Santos Neves [aut] ,
Lizzie Roeble [aut] ,
Theo Pannetier [aut]
Maintainer: Joshua W. Lambert <j.w.l.lambert@rug.nl>
Diff between DAISIEprep versions 0.4.0 dated 2024-04-02 and 1.0.0 dated 2024-12-17
DAISIEprep-0.4.0/DAISIEprep/inst/extdata/coccyzus_phylod.rds |only DAISIEprep-0.4.0/DAISIEprep/inst/extdata/columbiformes_phylod.rds |only DAISIEprep-0.4.0/DAISIEprep/inst/extdata/finches_phylod.rds |only DAISIEprep-0.4.0/DAISIEprep/inst/extdata/mimus_phylod.rds |only DAISIEprep-0.4.0/DAISIEprep/inst/extdata/myiarchus_phylod.rds |only DAISIEprep-0.4.0/DAISIEprep/inst/extdata/progne_phylod.rds |only DAISIEprep-0.4.0/DAISIEprep/inst/extdata/pyrocephalus_phylod.rds |only DAISIEprep-0.4.0/DAISIEprep/inst/extdata/setophaga_phylod.rds |only DAISIEprep-1.0.0/DAISIEprep/DESCRIPTION | 17 DAISIEprep-1.0.0/DAISIEprep/MD5 | 108 - DAISIEprep-1.0.0/DAISIEprep/NEWS.md | 65 DAISIEprep-1.0.0/DAISIEprep/R/add_asr_node_states.R | 9 DAISIEprep-1.0.0/DAISIEprep/R/add_island_colonist.R | 33 DAISIEprep-1.0.0/DAISIEprep/R/create_endemicity_status.R | 17 DAISIEprep-1.0.0/DAISIEprep/R/data.R |only DAISIEprep-1.0.0/DAISIEprep/R/default_params_doc.R | 34 DAISIEprep-1.0.0/DAISIEprep/R/extract_island_species.R | 51 DAISIEprep-1.0.0/DAISIEprep/R/extract_multi_tip_species.R | 2 DAISIEprep-1.0.0/DAISIEprep/R/extract_nonendemic.R | 24 DAISIEprep-1.0.0/DAISIEprep/R/is_multi_tip_species.R | 23 DAISIEprep-1.0.0/DAISIEprep/R/plot_phylod.R | 15 DAISIEprep-1.0.0/DAISIEprep/R/rm_duplicate_island_species.R |only DAISIEprep-1.0.0/DAISIEprep/R/rm_nonendemic_in_clade.R |only DAISIEprep-1.0.0/DAISIEprep/README.md | 2 DAISIEprep-1.0.0/DAISIEprep/build/vignette.rds |binary DAISIEprep-1.0.0/DAISIEprep/data |only DAISIEprep-1.0.0/DAISIEprep/inst/doc/Forcing_nonendemic_singleton.R |only DAISIEprep-1.0.0/DAISIEprep/inst/doc/Forcing_nonendemic_singleton.Rmd |only DAISIEprep-1.0.0/DAISIEprep/inst/doc/Forcing_nonendemic_singleton.html |only DAISIEprep-1.0.0/DAISIEprep/inst/doc/Multi_tip_extraction.R |only DAISIEprep-1.0.0/DAISIEprep/inst/doc/Multi_tip_extraction.Rmd |only DAISIEprep-1.0.0/DAISIEprep/inst/doc/Multi_tip_extraction.html |only DAISIEprep-1.0.0/DAISIEprep/inst/doc/Performance.html | 5 DAISIEprep-1.0.0/DAISIEprep/inst/doc/Sensitivity.html | 5 DAISIEprep-1.0.0/DAISIEprep/inst/doc/Tutorial.R | 109 - DAISIEprep-1.0.0/DAISIEprep/inst/doc/Tutorial.Rmd | 570 +---- DAISIEprep-1.0.0/DAISIEprep/inst/doc/Tutorial.html | 984 +++++----- DAISIEprep-1.0.0/DAISIEprep/inst/extdata/plant_phylo.rds |only DAISIEprep-1.0.0/DAISIEprep/man/GalapagosTrees.Rd |only DAISIEprep-1.0.0/DAISIEprep/man/add_asr_node_states.Rd | 8 DAISIEprep-1.0.0/DAISIEprep/man/coccyzus_phylod.Rd |only DAISIEprep-1.0.0/DAISIEprep/man/columbiformes_phylod.Rd |only DAISIEprep-1.0.0/DAISIEprep/man/create_endemicity_status.Rd | 5 DAISIEprep-1.0.0/DAISIEprep/man/default_params_doc.Rd | 35 DAISIEprep-1.0.0/DAISIEprep/man/extract_island_species.Rd | 27 DAISIEprep-1.0.0/DAISIEprep/man/extract_nonendemic_forced.Rd |only DAISIEprep-1.0.0/DAISIEprep/man/finches_phylod.Rd |only DAISIEprep-1.0.0/DAISIEprep/man/is_multi_tip_species.Rd | 19 DAISIEprep-1.0.0/DAISIEprep/man/mimus_phylod.Rd |only DAISIEprep-1.0.0/DAISIEprep/man/myiarchus_phylod.Rd |only DAISIEprep-1.0.0/DAISIEprep/man/plant_phylo.Rd |only DAISIEprep-1.0.0/DAISIEprep/man/progne_phylod.Rd |only DAISIEprep-1.0.0/DAISIEprep/man/pyrocephalus_phylod.Rd |only DAISIEprep-1.0.0/DAISIEprep/man/rm_duplicate_island_species.Rd |only DAISIEprep-1.0.0/DAISIEprep/man/setophaga_phylod.Rd |only DAISIEprep-1.0.0/DAISIEprep/tests/testthat/test-add_asr_node_states.R | 11 DAISIEprep-1.0.0/DAISIEprep/tests/testthat/test-as_daisie_datatable.R | 4 DAISIEprep-1.0.0/DAISIEprep/tests/testthat/test-bind_colonist_to_tbl.R | 4 DAISIEprep-1.0.0/DAISIEprep/tests/testthat/test-create_endemicity_status.R | 21 DAISIEprep-1.0.0/DAISIEprep/tests/testthat/test-extract_multi_tip_species.R | 12 DAISIEprep-1.0.0/DAISIEprep/tests/testthat/test-rm_duplicate_island_species.R |only DAISIEprep-1.0.0/DAISIEprep/vignettes/Forcing_nonendemic_singleton.Rmd |only DAISIEprep-1.0.0/DAISIEprep/vignettes/Multi_tip_extraction.Rmd |only DAISIEprep-1.0.0/DAISIEprep/vignettes/Tutorial.Rmd | 570 +---- 64 files changed, 1367 insertions(+), 1422 deletions(-)
Title: Coloured Formatting for Columns
Description: Provides 'pillar' and 'colonnade' generics designed
for formatting columns of data using the full range of colours
provided by modern terminals.
Author: Kirill Mueller [aut, cre] ,
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between pillar versions 1.9.0 dated 2023-03-22 and 1.10.0 dated 2024-12-17
pillar-1.10.0/pillar/DESCRIPTION | 12 pillar-1.10.0/pillar/MD5 | 128 pillar-1.10.0/pillar/NAMESPACE | 9 pillar-1.10.0/pillar/NEWS.md | 31 pillar-1.10.0/pillar/R/ctl_new_pillar.R | 2 pillar-1.10.0/pillar/R/ctl_new_pillar_list.R | 2 pillar-1.10.0/pillar/R/extent.R | 8 pillar-1.10.0/pillar/R/ggplot2.R | 18 pillar-1.10.0/pillar/R/glimpse.R | 15 pillar-1.10.0/pillar/R/num.R | 2 pillar-1.10.0/pillar/R/options.R | 7 pillar-1.10.0/pillar/R/pillar-package.R | 2 pillar-1.10.0/pillar/R/pillar.R | 2 pillar-1.10.0/pillar/R/shaft-.R | 8 pillar-1.10.0/pillar/R/styles.R | 9 pillar-1.10.0/pillar/R/tbl-format-body.R | 2 pillar-1.10.0/pillar/R/tbl-format-footer.R | 4 pillar-1.10.0/pillar/R/tbl-format-header.R | 2 pillar-1.10.0/pillar/R/tbl-format-setup.R | 112 pillar-1.10.0/pillar/R/tbl-format.R | 79 pillar-1.10.0/pillar/R/type.R | 5 pillar-1.10.0/pillar/R/utils.R | 22 pillar-1.10.0/pillar/R/vctr.R | 2 pillar-1.10.0/pillar/R/zzz.R | 9 pillar-1.10.0/pillar/README.md | 175 pillar-1.10.0/pillar/build/vignette.rds |binary pillar-1.10.0/pillar/inst/doc/debugme.R | 16 pillar-1.10.0/pillar/inst/doc/debugme.html | 18 pillar-1.10.0/pillar/inst/doc/extending.R | 2 pillar-1.10.0/pillar/inst/doc/extending.html | 458 - pillar-1.10.0/pillar/inst/doc/numbers.R | 148 pillar-1.10.0/pillar/inst/doc/printing.R | 356 - pillar-1.10.0/pillar/inst/doc/printing.Rmd | 1 pillar-1.10.0/pillar/inst/doc/printing.html | 3050 ---------- pillar-1.10.0/pillar/man/ctl_new_pillar.Rd | 2 pillar-1.10.0/pillar/man/ctl_new_pillar_list.Rd | 2 pillar-1.10.0/pillar/man/glimpse.Rd | 2 pillar-1.10.0/pillar/man/new_tbl_format_setup.Rd | 26 pillar-1.10.0/pillar/man/pillar-package.Rd | 2 pillar-1.10.0/pillar/man/pillar_options.Rd | 6 pillar-1.10.0/pillar/man/scale_x_num.Rd | 23 pillar-1.10.0/pillar/man/tbl_format_body.Rd | 2 pillar-1.10.0/pillar/man/tbl_format_footer.Rd | 2 pillar-1.10.0/pillar/man/tbl_format_header.Rd | 2 pillar-1.10.0/pillar/man/tbl_format_setup.Rd | 30 pillar-1.10.0/pillar/man/tbl_nrow.Rd |only pillar-1.10.0/pillar/tests/testthat/_snaps/ggplot2/basic.svg | 20 pillar-1.10.0/pillar/tests/testthat/_snaps/ggplot2/log-scale.svg | 84 pillar-1.10.0/pillar/tests/testthat/_snaps/glimpse.md | 69 pillar-1.10.0/pillar/tests/testthat/_snaps/num.md | 5 pillar-1.10.0/pillar/tests/testthat/_snaps/shaft-.md | 9 pillar-1.10.0/pillar/tests/testthat/_snaps/tbl-format-setup.md | 6 pillar-1.10.0/pillar/tests/testthat/test-ggplot2.R | 4 pillar-1.10.0/pillar/tests/testthat/test-glimpse.R | 22 pillar-1.10.0/pillar/tests/testthat/test-num.R | 3 pillar-1.10.0/pillar/tests/testthat/test-shaft-.R | 7 pillar-1.10.0/pillar/vignettes/printing.Rmd | 1 pillar-1.9.0/pillar/tests/testthat/_snaps/ansi/format_multi.md |only pillar-1.9.0/pillar/tests/testthat/_snaps/format_multi.md |only pillar-1.9.0/pillar/tests/testthat/_snaps/format_multi_fuzz.md |only pillar-1.9.0/pillar/tests/testthat/_snaps/format_multi_fuzz_2.md |only pillar-1.9.0/pillar/tests/testthat/_snaps/testthat_3.1.2-ansi |only pillar-1.9.0/pillar/tests/testthat/_snaps/testthat_3.1.2-unicode |only pillar-1.9.0/pillar/tests/testthat/_snaps/testthat_3.1.2/format_multi.md |only pillar-1.9.0/pillar/tests/testthat/_snaps/testthat_3.1.2/format_multi_fuzz.md |only pillar-1.9.0/pillar/tests/testthat/_snaps/testthat_3.1.2/format_multi_fuzz_2.md |only pillar-1.9.0/pillar/tests/testthat/_snaps/testthat_3.1.2/zzx-format_character.md |only pillar-1.9.0/pillar/tests/testthat/_snaps/testthat_3.1.3-unicode |only pillar-1.9.0/pillar/tests/testthat/_snaps/testthat_3.1.3/format_multi.md |only pillar-1.9.0/pillar/tests/testthat/_snaps/testthat_3.1.3/format_multi_fuzz.md |only pillar-1.9.0/pillar/tests/testthat/_snaps/testthat_3.1.3/format_multi_fuzz_2.md |only pillar-1.9.0/pillar/tests/testthat/_snaps/testthat_3.1.3/zzx-format_character.md |only pillar-1.9.0/pillar/tests/testthat/_snaps/unicode/format_multi.md |only pillar-1.9.0/pillar/tests/testthat/_snaps/zzx-format_character.md |only 74 files changed, 1350 insertions(+), 3695 deletions(-)
Title: Phase Error Correction and Baseline Correction for One
Dimensional ('1D') 'NMR' Data
Description: There are three distinct approaches for phase error correction, they are: a single linear model with a choice of optimization functions, multiple linear models with optimization function choices and a shrinkage-based method. The methodology is based on our new algorithms and various references (Binczyk et al. (2015) <doi:10.1186/1475-925X-14-S2-S5>,Chen et al. (2002) <doi:10.1016/S1090-7807(02)00069-1>, de Brouwer (2009) <doi:10.1016/j.jmr.2009.09.017>, Džakula (2000) <doi:10.1006/jmre.2000.2123>, Ernst (1969) <doi:10.1016/0022-2364(69)90003-1>, Liland et al. (2010) <doi:10.1366/000370210792434350>).
Author: Aixiang Jiang [aut, cre, cph]
Maintainer: Aixiang Jiang <aijiang@bccrc.ca>
Diff between NMRphasing versions 1.0.5 dated 2024-10-12 and 1.0.6 dated 2024-12-17
DESCRIPTION | 14 MD5 | 21 NAMESPACE | 8 R/findLocalMaxWinSizeR.R |only R/getLocalMaximumCWTR.R |only R/localMaximumR.R |only R/localMaximumSlidingWindowR.R |only R/peakDetectionCWTR.R |only R/peakSearch.R | 5 build/vignette.rds |binary inst/doc/NMRphasing_vignette.R | 30 - inst/doc/NMRphasing_vignette.html | 860 ++++++++++++++++++++------------------ inst/doc/NMRphasing_vignette.rmd | 32 - vignettes/NMRphasing_vignette.rmd | 32 - 14 files changed, 541 insertions(+), 461 deletions(-)
Title: MCMC, Particle Filtering, and Programmable Hierarchical Modeling
Description: A system for writing hierarchical statistical models largely
compatible with 'BUGS' and 'JAGS', writing nimbleFunctions to operate models
and do basic R-style math, and compiling both models and nimbleFunctions via
custom-generated C++. 'NIMBLE' includes default methods for MCMC, Laplace
Approximation, Monte Carlo Expectation Maximization, and some other tools.
The nimbleFunction system makes it easy to do things like implement new MCMC
samplers from R, customize the assignment of samplers to different parts of
a model from R, and compile the new samplers automatically via C++ alongside
the samplers 'NIMBLE' provides. 'NIMBLE' extends the 'BUGS'/'JAGS' language
by making it extensible: New distributions and functions can be added,
including as calls to external compiled code. Although most people think
of MCMC as the main goal of the 'BUGS'/'JAGS' language for writing models,
one can use 'NIMBLE' for writing arbitrary other kinds of model-generic
algorithms as well. A full User Manual [...truncated...]
Author: Perry de Valpine [aut],
Christopher Paciorek [aut, cre],
Daniel Turek [aut],
Nick Michaud [aut],
Cliff Anderson-Bergman [aut],
Fritz Obermeyer [aut],
Claudia Wehrhahn Cortes [aut] ,
Abel Rodriguez [aut] ,
Duncan Temple Lang [aut] ,
Wei Zhang [aut] ,
[...truncated...]
Maintainer: Christopher Paciorek <paciorek@stat.berkeley.edu>
Diff between nimble versions 1.2.1 dated 2024-07-30 and 1.3.0 dated 2024-12-17
nimble-1.2.1/nimble/man/model_macro_builder.Rd |only nimble-1.3.0/nimble/DESCRIPTION | 12 nimble-1.3.0/nimble/INSTALL | 6 nimble-1.3.0/nimble/MD5 | 120 nimble-1.3.0/nimble/NAMESPACE | 7 nimble-1.3.0/nimble/R/BNP_samplers.R | 36 nimble-1.3.0/nimble/R/BUGS_BUGSdecl.R | 8 nimble-1.3.0/nimble/R/BUGS_macros.R | 59 nimble-1.3.0/nimble/R/BUGS_modelDef.R | 31 nimble-1.3.0/nimble/R/BUGS_readBUGS.R | 2 nimble-1.3.0/nimble/R/Laplace.R | 836 ++--- nimble-1.3.0/nimble/R/MCMC_configuration.R | 14 nimble-1.3.0/nimble/R/MCMC_run.R | 8 nimble-1.3.0/nimble/R/MCMC_samplers.R | 429 ++ nimble-1.3.0/nimble/R/MCMC_utils.R | 86 nimble-1.3.0/nimble/R/RCfunction_core.R | 6 nimble-1.3.0/nimble/R/distributions_processInputList.R | 9 nimble-1.3.0/nimble/R/externalCalls.R | 2 nimble-1.3.0/nimble/R/genCpp_exprClass.R | 2 nimble-1.3.0/nimble/R/genCpp_sizeProcessing.R | 23 nimble-1.3.0/nimble/R/genCpp_toEigenize.R | 6 nimble-1.3.0/nimble/R/nimbleFunction_Rderivs.R | 2 nimble-1.3.0/nimble/R/nimbleFunction_Rexecution.R | 51 nimble-1.3.0/nimble/R/nimbleFunction_compile.R | 9 nimble-1.3.0/nimble/R/nimbleList_core.R | 6 nimble-1.3.0/nimble/R/options.R | 26 nimble-1.3.0/nimble/R/types_util.R | 8 nimble-1.3.0/nimble/inst/CppCode/Utils.cpp | 6 nimble-1.3.0/nimble/inst/CppCode/predefinedNimbleLists.cpp | 55 nimble-1.3.0/nimble/inst/NEWS.md | 76 nimble-1.3.0/nimble/inst/include/nimble/Utils.h | 5 nimble-1.3.0/nimble/inst/include/nimble/nimOptim.h | 2 nimble-1.3.0/nimble/inst/include/nimble/predefinedNimbleLists.h | 6 nimble-1.3.0/nimble/man/buildMacro.Rd |only nimble-1.3.0/nimble/man/deregisterDistributions.Rd | 8 nimble-1.3.0/nimble/man/getMacroParameters.Rd | 2 nimble-1.3.0/nimble/man/laplace.Rd | 75 nimble-1.3.0/nimble/man/nimDerivs.Rd | 2 nimble-1.3.0/nimble/man/nimOptim.Rd | 28 nimble-1.3.0/nimble/man/nimble-internal.Rd | 17 nimble-1.3.0/nimble/man/runLaplace.Rd | 5 nimble-1.3.0/nimble/man/runMCMC.Rd | 2 nimble-1.3.0/nimble/man/samplers.Rd | 57 nimble-1.3.0/nimble/man/summaryLaplace.Rd | 10 nimble-1.3.0/nimble/tests/testthat/Makevars |only nimble-1.3.0/nimble/tests/testthat/barkerTestLog.Rout |only nimble-1.3.0/nimble/tests/testthat/barkerTestLog_Correct.Rout |only nimble-1.3.0/nimble/tests/testthat/dynamicIndexingTestLog.Rout | 51 nimble-1.3.0/nimble/tests/testthat/dynamicIndexingTestLog_Correct.Rout | 110 nimble-1.3.0/nimble/tests/testthat/mcemTestLog.Rout | 1508 +++++++++- nimble-1.3.0/nimble/tests/testthat/test-ADaghq.R | 42 nimble-1.3.0/nimble/tests/testthat/test-ADlaplace.R | 105 nimble-1.3.0/nimble/tests/testthat/test-barker.R |only nimble-1.3.0/nimble/tests/testthat/test-bnp.R | 96 nimble-1.3.0/nimble/tests/testthat/test-dynamicIndexing.R | 28 nimble-1.3.0/nimble/tests/testthat/test-errors.R | 10 nimble-1.3.0/nimble/tests/testthat/test-externalCalls.R | 2 nimble-1.3.0/nimble/tests/testthat/test-macros.R | 217 + nimble-1.3.0/nimble/tests/testthat/test-mcmc.R | 7 nimble-1.3.0/nimble/tests/testthat/test-nimbleList.R | 22 nimble-1.3.0/nimble/tests/testthat/test-optim.R | 81 nimble-1.3.0/nimble/tests/testthat/test-setupMargNodes.R | 44 nimble-1.3.0/nimble/tests/testthat/test-user.R | 74 nimble-1.3.0/nimble/tests/testthat/truncTestLog_Correct.Rout | 522 +-- 64 files changed, 3844 insertions(+), 1235 deletions(-)
Title: Simplify 'ggplot2' Visualisation
Description: Simplify 'ggplot2' visualisation with 'ggblanket' wrapper
functions.
Author: David Hodge [aut, cre, cph]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between ggblanket versions 11.0.0 dated 2024-11-22 and 11.1.0 dated 2024-12-17
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Title: 'R6'-Based Flexible Framework for Permutation Tests
Description: Implements non-parametric tests from Higgins (2004, ISBN:0534387756), including tests for one sample, two samples, k samples, paired comparisons, blocked designs, trends and association. Built with 'Rcpp' for efficiency and 'R6' for flexible, object-oriented design, the package provides a unified framework for performing or creating custom permutation tests.
Author: Yan Du [aut, cre]
Maintainer: Yan Du <isduyan@outlook.com>
Diff between LearnNonparam versions 1.2.5 dated 2024-11-14 and 1.2.6 dated 2024-12-17
LearnNonparam-1.2.5/LearnNonparam/README.md |only LearnNonparam-1.2.5/LearnNonparam/inst/include/pmt/reorder.hpp |only LearnNonparam-1.2.5/LearnNonparam/man/figures/README |only LearnNonparam-1.2.5/LearnNonparam/man/references |only LearnNonparam-1.2.6/LearnNonparam/DESCRIPTION | 6 LearnNonparam-1.2.6/LearnNonparam/MD5 | 126 ++---- LearnNonparam-1.2.6/LearnNonparam/NEWS.md | 52 +- LearnNonparam-1.2.6/LearnNonparam/R/AnsariBradley.R | 2 LearnNonparam-1.2.6/LearnNonparam/R/Friedman.R | 2 LearnNonparam-1.2.6/LearnNonparam/R/KolmogorovSmirnov.R | 2 LearnNonparam-1.2.6/LearnNonparam/R/Page.R | 4 LearnNonparam-1.2.6/LearnNonparam/R/PermuTest.R | 20 - LearnNonparam-1.2.6/LearnNonparam/R/RCBDOneWay.R | 3 LearnNonparam-1.2.6/LearnNonparam/R/do_call.R | 33 + LearnNonparam-1.2.6/LearnNonparam/R/pmt.R | 67 ++- LearnNonparam-1.2.6/LearnNonparam/data/Table1.1.1.rda |binary LearnNonparam-1.2.6/LearnNonparam/data/Table1.2.1.rda |binary LearnNonparam-1.2.6/LearnNonparam/data/Table2.1.1.rda |binary LearnNonparam-1.2.6/LearnNonparam/data/Table2.3.1.rda |binary LearnNonparam-1.2.6/LearnNonparam/data/Table2.6.1.rda |binary LearnNonparam-1.2.6/LearnNonparam/data/Table2.6.2.rda |binary LearnNonparam-1.2.6/LearnNonparam/data/Table2.8.1.rda |binary LearnNonparam-1.2.6/LearnNonparam/data/Table3.1.2.rda |binary LearnNonparam-1.2.6/LearnNonparam/data/Table3.2.2.rda |binary LearnNonparam-1.2.6/LearnNonparam/data/Table3.2.3.rda |binary LearnNonparam-1.2.6/LearnNonparam/data/Table3.3.1.rda |binary LearnNonparam-1.2.6/LearnNonparam/data/Table3.4.1.rda |binary LearnNonparam-1.2.6/LearnNonparam/data/Table4.1.1.rda |binary LearnNonparam-1.2.6/LearnNonparam/data/Table4.1.3.rda |binary LearnNonparam-1.2.6/LearnNonparam/data/Table4.4.3.rda |binary LearnNonparam-1.2.6/LearnNonparam/data/Table4.5.3.rda |binary LearnNonparam-1.2.6/LearnNonparam/data/Table5.1.2.rda |binary LearnNonparam-1.2.6/LearnNonparam/data/Table5.2.2.rda |binary LearnNonparam-1.2.6/LearnNonparam/data/Table5.4.2.rda |binary LearnNonparam-1.2.6/LearnNonparam/inst/include/pmt/impl_association_pmt.hpp | 27 - LearnNonparam-1.2.6/LearnNonparam/inst/include/pmt/impl_ksample_pmt.hpp | 20 - LearnNonparam-1.2.6/LearnNonparam/inst/include/pmt/impl_multcomp_pmt.hpp | 26 - LearnNonparam-1.2.6/LearnNonparam/inst/include/pmt/impl_paired_pmt.hpp | 26 - LearnNonparam-1.2.6/LearnNonparam/inst/include/pmt/impl_rcbd_pmt.hpp | 50 +- LearnNonparam-1.2.6/LearnNonparam/inst/include/pmt/impl_table_pmt.hpp | 32 - LearnNonparam-1.2.6/LearnNonparam/inst/include/pmt/impl_twosample_pmt.hpp | 36 - LearnNonparam-1.2.6/LearnNonparam/inst/include/pmt/permutation.hpp |only LearnNonparam-1.2.6/LearnNonparam/inst/include/pmt/progress.hpp | 129 +++--- LearnNonparam-1.2.6/LearnNonparam/man/CDF.Rd | 144 +++---- LearnNonparam-1.2.6/LearnNonparam/man/KSampleTest.Rd | 24 - LearnNonparam-1.2.6/LearnNonparam/man/OneSampleTest.Rd | 86 ++-- LearnNonparam-1.2.6/LearnNonparam/man/OneWay.Rd | 122 +++--- LearnNonparam-1.2.6/LearnNonparam/man/Page.Rd | 2 LearnNonparam-1.2.6/LearnNonparam/man/PairedDifference.Rd | 188 +++++----- LearnNonparam-1.2.6/LearnNonparam/man/PermuTest.Rd | 4 LearnNonparam-1.2.6/LearnNonparam/man/RCBDOneWay.Rd | 118 +++--- LearnNonparam-1.2.6/LearnNonparam/man/RCBDTest.Rd | 24 - LearnNonparam-1.2.6/LearnNonparam/man/Studentized.Rd | 166 ++++---- LearnNonparam-1.2.6/LearnNonparam/man/TwoSampleAssociationTest.Rd | 24 - LearnNonparam-1.2.6/LearnNonparam/man/TwoSampleLocationTest.Rd | 24 - LearnNonparam-1.2.6/LearnNonparam/man/TwoSamplePairedTest.Rd | 24 - LearnNonparam-1.2.6/LearnNonparam/man/TwoSampleTest.Rd | 24 - LearnNonparam-1.2.6/LearnNonparam/man/pmt.Rd | 62 ++- LearnNonparam-1.2.6/LearnNonparam/src/pmt_interface.cpp | 68 ++- 59 files changed, 933 insertions(+), 834 deletions(-)
Title: Visualize Item Metrics of the Classical Test Theory Framework
Description: Visualizes results of item analysis such as item difficulty,
item discrimination, and coefficient alpha for ease of result communication.
Author: Tarid Wongvorachan [aut, cre, cph]
Maintainer: Tarid Wongvorachan <taridwongvorachan@gmail.com>
Diff between CTTvis versions 0.1.0 dated 2024-11-21 and 0.1.1 dated 2024-12-17
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NAMESPACE | 1 + NEWS.md | 13 ++++++++++--- R/coefficient_alpha_plot.R | 18 ++++++++++++++---- R/difficulty_plot.R | 17 +++++++++++++---- R/point_biserial_plot.R | 15 ++++++++++++--- README.md | 22 ++++++++++++++++++---- build/vignette.rds |binary inst/doc/CTTvis.html | 6 +++--- 10 files changed, 83 insertions(+), 33 deletions(-)
Title: Survival Analysis
Description: Contains the core survival analysis routines, including
definition of Surv objects,
Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models,
and parametric accelerated failure time models.
Author: Terry M Therneau [aut, cre],
Thomas Lumley [ctb, trl] ,
Atkinson Elizabeth [ctb],
Crowson Cynthia [ctb]
Maintainer: Terry M Therneau <therneau.terry@mayo.edu>
Diff between survival versions 3.7-0 dated 2024-06-05 and 3.8-3 dated 2024-12-17
survival-3.7-0/survival/noweb/survexpm.Rnw |only survival-3.8-3/survival/DESCRIPTION | 8 survival-3.8-3/survival/MD5 | 223 - survival-3.8-3/survival/NAMESPACE | 2 survival-3.8-3/survival/R/aareg.R | 6 survival-3.8-3/survival/R/agsurv.R | 20 survival-3.8-3/survival/R/anova.coxphlist.R | 11 survival-3.8-3/survival/R/anova.coxphms.R |only survival-3.8-3/survival/R/concordance.R | 16 survival-3.8-3/survival/R/coxph.R | 44 survival-3.8-3/survival/R/coxph.control.R | 12 survival-3.8-3/survival/R/coxsurvfit.R | 96 survival-3.8-3/survival/R/model.frame.survreg.R | 3 survival-3.8-3/survival/R/parsecovar.R | 16 survival-3.8-3/survival/R/plot.cox.zph.R | 14 survival-3.8-3/survival/R/plot.survfit.R | 352 +-- survival-3.8-3/survival/R/predict.coxph.R | 38 survival-3.8-3/survival/R/predict.coxphms.R | 336 ++ survival-3.8-3/survival/R/residuals.survfit.R | 2 survival-3.8-3/survival/R/rsurvpart2.R | 4 survival-3.8-3/survival/R/summary.survfit.R | 2 survival-3.8-3/survival/R/survcheck.R | 12 survival-3.8-3/survival/R/survdiff.R | 15 survival-3.8-3/survival/R/survexpm.R | 52 survival-3.8-3/survival/R/survfit.R | 16 survival-3.8-3/survival/R/survfit.coxphms.R | 31 survival-3.8-3/survival/R/survfitAJ.R | 15 survival-3.8-3/survival/R/survreg.R | 30 survival-3.8-3/survival/R/survreg.fit.R | 3 survival-3.8-3/survival/R/timeline.R |only survival-3.8-3/survival/R/xtras.R | 80 survival-3.8-3/survival/data/nafld.rda |binary survival-3.8-3/survival/data/reliability.rda |binary survival-3.8-3/survival/inst/NEWS.Rd | 86 survival-3.8-3/survival/inst/doc/adjcurve.pdf |binary survival-3.8-3/survival/inst/doc/approximate.pdf |binary survival-3.8-3/survival/inst/doc/compete.pdf |binary survival-3.8-3/survival/inst/doc/concordance.pdf |binary survival-3.8-3/survival/inst/doc/matrix.pdf |binary survival-3.8-3/survival/inst/doc/methods.R | 39 survival-3.8-3/survival/inst/doc/methods.Rnw | 539 ++++ survival-3.8-3/survival/inst/doc/methods.pdf |binary survival-3.8-3/survival/inst/doc/multi.pdf |binary survival-3.8-3/survival/inst/doc/other.pdf |binary survival-3.8-3/survival/inst/doc/population.pdf |binary survival-3.8-3/survival/inst/doc/redistribute.pdf |binary survival-3.8-3/survival/inst/doc/splines.pdf |binary survival-3.8-3/survival/inst/doc/survival.R | 25 survival-3.8-3/survival/inst/doc/survival.Rnw | 27 survival-3.8-3/survival/inst/doc/survival.pdf |binary survival-3.8-3/survival/inst/doc/tiedtimes.pdf |binary survival-3.8-3/survival/inst/doc/timedep.Rnw | 8 survival-3.8-3/survival/inst/doc/timedep.pdf |binary survival-3.8-3/survival/inst/doc/validate.pdf |binary survival-3.8-3/survival/man/coxph.Rd | 65 survival-3.8-3/survival/man/kidney.Rd | 4 survival-3.8-3/survival/man/lines.survfit.Rd | 11 survival-3.8-3/survival/man/nafld.Rd | 1 survival-3.8-3/survival/man/plot.cox.zph.Rd | 5 survival-3.8-3/survival/man/plot.survfit.Rd | 20 survival-3.8-3/survival/man/predict.coxph.Rd | 14 survival-3.8-3/survival/man/pseudo.Rd | 54 survival-3.8-3/survival/man/reliability.Rd | 10 survival-3.8-3/survival/man/royston.Rd | 12 survival-3.8-3/survival/man/solder.Rd | 21 survival-3.8-3/survival/man/summary.survfit.Rd | 40 survival-3.8-3/survival/man/survcondense.Rd | 9 survival-3.8-3/survival/man/survdiff.Rd | 11 survival-3.8-3/survival/man/timeline.Rd |only survival-3.8-3/survival/noweb/Makefile | 12 survival-3.8-3/survival/noweb/code.nw | 1283 +---------- survival-3.8-3/survival/noweb/concordance.Rnw | 18 survival-3.8-3/survival/noweb/coxph.Rnw | 44 survival-3.8-3/survival/noweb/coxsurv2.Rnw | 2 survival-3.8-3/survival/noweb/coxsurv3.Rnw | 31 survival-3.8-3/survival/noweb/parse.Rnw | 33 survival-3.8-3/survival/noweb/plot.Rnw | 137 - survival-3.8-3/survival/noweb/predict.coxph.Rnw | 38 survival-3.8-3/survival/src/agsurv4.c | 7 survival-3.8-3/survival/src/agsurv5.c | 6 survival-3.8-3/survival/src/cdecomp.c | 1 survival-3.8-3/survival/src/survreg6.c | 100 survival-3.8-3/survival/tests/Examples/survival-Ex.Rout.save | 56 survival-3.8-3/survival/tests/coxsurv.R | 7 survival-3.8-3/survival/tests/coxsurv.Rout.save | 11 survival-3.8-3/survival/tests/coxsurv3.R | 26 survival-3.8-3/survival/tests/coxsurv3.Rout.save | 31 survival-3.8-3/survival/tests/coxsurv6.R | 19 survival-3.8-3/survival/tests/coxsurv6.Rout.save | 44 survival-3.8-3/survival/tests/doublecolon.R |only survival-3.8-3/survival/tests/doublecolon.Rout.save |only survival-3.8-3/survival/tests/ekm.R | 2 survival-3.8-3/survival/tests/ekm.Rout.save | 6 survival-3.8-3/survival/tests/jasa.R | 2 survival-3.8-3/survival/tests/jasa.Rout.save | 44 survival-3.8-3/survival/tests/mstate.R | 2 survival-3.8-3/survival/tests/mstate.Rout.save | 6 survival-3.8-3/survival/tests/multi2.R | 7 survival-3.8-3/survival/tests/multi2.Rout.save | 15 survival-3.8-3/survival/tests/multi3.R | 8 survival-3.8-3/survival/tests/multi3.Rout.save | 16 survival-3.8-3/survival/tests/multistate.R | 23 survival-3.8-3/survival/tests/multistate.Rout.save | 31 survival-3.8-3/survival/tests/r_lung.Rout.save | 10 survival-3.8-3/survival/tests/r_resid.Rout.save | 10 survival-3.8-3/survival/tests/residsfx.Rtemp |only survival-3.8-3/survival/tests/survexpm.R.later |only survival-3.8-3/survival/tests/survexpm.R.notyet |only survival-3.8-3/survival/tests/survreg1.Rout.save | 10 survival-3.8-3/survival/tests/survreg2.R | 38 survival-3.8-3/survival/tests/survreg2.Rout.save | 47 survival-3.8-3/survival/tests/testreg.Rout.save | 10 survival-3.8-3/survival/tests/zph.R | 4 survival-3.8-3/survival/tests/zph.Rout.save | 12 survival-3.8-3/survival/vignettes/methods.Rnw | 539 ++++ survival-3.8-3/survival/vignettes/survival.Rnw | 27 survival-3.8-3/survival/vignettes/timedep.Rnw | 8 117 files changed, 3204 insertions(+), 2039 deletions(-)
Title: MR Spectroscopy Analysis Tools
Description: Tools for reading, visualising and processing Magnetic Resonance
Spectroscopy data. The package includes methods for spectral fitting: Wilson
(2021) <DOI:10.1002/mrm.28385> and spectral alignment: Wilson (2018)
<DOI:10.1002/mrm.27605>.
Author: Martin Wilson [cre, aut] ,
Yong Wang [ctb],
John Muschelli [ctb]
Maintainer: Martin Wilson <martin@pipegrep.co.uk>
Diff between spant versions 2.24.0 dated 2024-11-14 and 3.1.0 dated 2024-12-17
DESCRIPTION | 15 +- MD5 | 53 +++++--- NAMESPACE | 5 NEWS.md | 11 + R/abfit.R | 177 +++++++++++++++++++++++++++++- R/amp_scaling.R | 129 ++++++++++++++++----- R/fit_display.R | 14 +- R/fit_svs.R |only R/mol_parameters.R | 159 +++++++------------------- R/mrs_data_display.R | 13 -- R/mrs_data_io.R | 51 ++++---- R/mrs_data_proc.R | 2 R/mrs_read_ima.R | 7 + R/qm_simulation.R | 70 +++++++++++ R/utils.R | 42 +++++++ inst/doc/abfit-baseline-opts.html | 14 +- inst/doc/spant-basis-simulation.html | 10 - inst/doc/spant-intro.html | 128 +++++++++++---------- inst/doc/spant-metabolite-simulation.html | 61 +++++----- inst/doc/spant-preprocessing.html | 16 +- inst/extdata/press_refocus.pta |only inst/rmd/dyn_svs_report.Rmd |only inst/rmd/svs_report.Rmd |only man/abfit_reg_opts.Rd |only man/fit_svs.Rd |only man/fit_svs_gui.Rd |only man/read_mrs.Rd | 11 + man/scale_amp_legacy.Rd |only man/scale_amp_molar.Rd | 3 man/sim_basis.Rd | 9 + man/spant-package.Rd | 1 man/sv_res_table.Rd |only 32 files changed, 660 insertions(+), 341 deletions(-)
Title: A Dipping Sauce for Data Analysis and Visualizations
Description: Works as an "add-on" to packages like 'shiny', 'future', as well as
'rlang', and provides utility functions. Just like dipping sauce adding
flavors to potato chips or pita bread, 'dipsaus' for data analysis and
visualizations adds handy functions and enhancements to popular packages.
The goal is to provide simple solutions that are frequently asked for
online, such as how to synchronize 'shiny' inputs without freezing the app,
or how to get memory size on 'Linux' or 'MacOS' system. The enhancements
roughly fall into these four categories: 1. 'shiny' input widgets; 2.
high-performance computing using the 'future' package; 3.
modify R calls and convert among numbers, strings, and other objects. 4.
utility functions to get system information such like CPU chip-set, memory
limit, etc.
Author: Zhengjia Wang [aut, cre],
John Magnotti [ctb] ,
Xiang Zhang [ctb]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between dipsaus versions 0.2.9 dated 2024-06-27 and 0.3.0 dated 2024-12-17
DESCRIPTION | 10 MD5 | 48 NAMESPACE | 2 NEWS.md | 8 R/aaa.R | 2 R/apply.R | 3 R/language.R | 14 R/parallels-apply-script.R | 2 R/parallels-future.R | 255 R/shiny-progress.R | 19 R/shiny-syncInputs.R | 2 build/vignette.rds |binary inst/doc/r_expr_addons.R | 59 inst/doc/r_expr_addons.Rmd | 51 inst/doc/r_expr_addons.html | 81 inst/doc/shiny_customized_widgets.R | 68 inst/doc/shiny_customized_widgets.Rmd | 10 inst/doc/shiny_customized_widgets.html | 7985 ---------------------- inst/doc/utility_functions.R | 58 inst/doc/utility_functions.html | 72 inst/shiny-addons/dipsaus/dipsaus-dipterix-lib.js | 35 man/do_aggregate.Rd | 3 man/no_op.Rd | 14 vignettes/r_expr_addons.Rmd | 51 vignettes/shiny_customized_widgets.Rmd | 10 25 files changed, 505 insertions(+), 8357 deletions(-)
Title: Next Generation Clustered Heat Maps
Description: Next-Generation Clustered Heat Maps (NG-CHMs) allow for
dynamic exploration of heat map data in a web browser. 'NGCHM' allows
users to create both stand-alone HTML files containing a
Next-Generation Clustered Heat Map, and .ngchm files to view in the
NG-CHM viewer. See Ryan MC, Stucky M, et al (2020)
<doi:10.12688/f1000research.20590.2> for more details.
Author: Bradley M Broom [aut] ,
Mary A Rohrdanz [ctb, cre],
Chris Wakefield [ctb],
James M Melott [ctb],
MD Anderson Cancer Center [cph]
Maintainer: Mary A Rohrdanz <marohrdanz@mdanderson.org>
Diff between NGCHM versions 1.0.3 dated 2024-05-08 and 1.0.4 dated 2024-12-17
DESCRIPTION | 12 +- MD5 | 22 ++-- R/allClasses.R | 10 - R/functions.R | 115 ++++++++++++++------ R/internalFunctions.R | 126 +++++++++++++++++------ R/package.R | 2 R/zzz.R | 4 inst/base.config/conf.d/01-server-protocol-scl.R | 9 + man/NGCHM-package.Rd | 18 ++- man/chmAddUMAP.Rd | 2 man/chmExportToHTML-method.Rd | 4 tests/testthat/test-clustering.R |only tests/testthat/test-validateColor.R |only 13 files changed, 226 insertions(+), 98 deletions(-)
Title: Cronbach's Alpha
Description: Cronbach's alpha and various formulas for confidence intervals. The relevant paper is Tsagris M., Frangos C.C. and Frangos C.C. (2013). "Confidence intervals for Cronbach's reliability coefficient". Recent Techniques in Educational Science, 14-16 May, Athens, Greece.
Author: Michail Tsagris [aut, cre],
Constantinos Frangos [aut],
Christos Frangos [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between Cronbach versions 0.1 dated 2020-11-18 and 0.2 dated 2024-12-17
DESCRIPTION | 11 +++++------ MD5 | 18 +++++++++--------- NAMESPACE | 2 ++ R/cron.ci.R | 5 +++-- R/cronbach.R | 2 +- R/cronfree.ci.R | 7 ++++--- man/Cronbach-package.Rd | 22 ++++++++++++---------- man/cron.ci.Rd | 13 ++++++------- man/cronbach.Rd | 4 ++-- man/cronfree.ci.Rd | 14 +++++++------- 10 files changed, 51 insertions(+), 47 deletions(-)
Title: Boost C++ Header Files
Description: Boost provides free peer-reviewed portable C++ source
libraries. A large part of Boost is provided as C++ template code
which is resolved entirely at compile-time without linking. This
package aims to provide the most useful subset of Boost libraries
for template use among CRAN packages. By placing these libraries in
this package, we offer a more efficient distribution system for CRAN
as replication of this code in the sources of other packages is
avoided. As of release 1.84.0-0, the following Boost libraries are
included: 'accumulators' 'algorithm' 'align' 'any' 'atomic' 'beast'
'bimap' 'bind' 'circular_buffer' 'compute' 'concept' 'config'
'container' 'date_time' 'detail' 'dynamic_bitset' 'exception'
'flyweight' 'foreach' 'functional' 'fusion' 'geometry' 'graph' 'heap'
'icl' 'integer' 'interprocess' 'intrusive' 'io' 'iostreams'
'iterator' 'lambda2' 'math' 'move' 'mp11' 'mpl' 'multiprecision'
'numeric' 'pending' 'phoenix' 'polygon' 'preprocessor' 'process'
'propery_tree' 'qvm' 'rando [...truncated...]
Author: Dirk Eddelbuettel [aut, cre] ,
John W. Emerson [aut],
Michael J. Kane [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between BH versions 1.84.0-0 dated 2024-01-10 and 1.87.0-1 dated 2024-12-17
BH-1.84.0-0/BH/inst/include/boost/asio/experimental/cancellation_condition.hpp |only BH-1.84.0-0/BH/inst/include/boost/asio/experimental/impl/parallel_group.hpp |only BH-1.84.0-0/BH/inst/include/boost/asio/experimental/parallel_group.hpp |only BH-1.84.0-0/BH/inst/include/boost/asio/io_service.hpp |only BH-1.84.0-0/BH/inst/include/boost/asio/io_service_strand.hpp |only BH-1.84.0-0/BH/inst/include/boost/asio/ssl/impl/rfc2818_verification.ipp |only BH-1.84.0-0/BH/inst/include/boost/asio/ssl/rfc2818_verification.hpp |only BH-1.84.0-0/BH/inst/include/boost/bind/bind_cc.hpp |only BH-1.84.0-0/BH/inst/include/boost/bind/bind_mf2_cc.hpp |only BH-1.84.0-0/BH/inst/include/boost/bind/bind_mf_cc.hpp |only BH-1.84.0-0/BH/inst/include/boost/bind/bind_template.hpp |only BH-1.84.0-0/BH/inst/include/boost/bind/detail/is_same.hpp |only BH-1.84.0-0/BH/inst/include/boost/bind/detail/requires_cxx11.hpp |only BH-1.84.0-0/BH/inst/include/boost/bind/mem_fn_cc.hpp |only 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BH-1.87.0-1/BH/inst/include/boost/geometry/algorithms/detail/envelope/initialize.hpp | 7 BH-1.87.0-1/BH/inst/include/boost/geometry/algorithms/detail/envelope/range_of_boxes.hpp | 4 BH-1.87.0-1/BH/inst/include/boost/geometry/algorithms/detail/envelope/segment.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/algorithms/detail/equals/collect_vectors.hpp | 10 BH-1.87.0-1/BH/inst/include/boost/geometry/algorithms/detail/equals/interface.hpp | 8 BH-1.87.0-1/BH/inst/include/boost/geometry/algorithms/detail/extreme_points.hpp | 6 BH-1.87.0-1/BH/inst/include/boost/geometry/algorithms/detail/for_each_range.hpp | 1 BH-1.87.0-1/BH/inst/include/boost/geometry/algorithms/detail/has_self_intersections.hpp | 21 BH-1.87.0-1/BH/inst/include/boost/geometry/algorithms/detail/intersection/areal_areal.hpp | 39 BH-1.87.0-1/BH/inst/include/boost/geometry/algorithms/detail/intersection/box_box_implementation.hpp | 14 BH-1.87.0-1/BH/inst/include/boost/geometry/algorithms/detail/intersection/gc.hpp | 14 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BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/cartesian/centroid_average.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/cartesian/centroid_bashein_detmer.hpp | 18 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/cartesian/centroid_weighted_length.hpp | 6 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/cartesian/densify.hpp | 7 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/cartesian/disjoint_segment_box.hpp | 22 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/cartesian/distance_projected_point_ax.hpp | 3 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/cartesian/distance_pythagoras.hpp | 11 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/cartesian/distance_pythagoras_box_box.hpp | 18 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/cartesian/distance_pythagoras_point_box.hpp | 14 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/cartesian/envelope.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/cartesian/envelope_box.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/cartesian/envelope_multipoint.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/cartesian/envelope_point.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/cartesian/envelope_segment.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/cartesian/expand_box.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/cartesian/expand_point.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/cartesian/expand_segment.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/cartesian/intersection.hpp | 182 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/cartesian/line_interpolate.hpp | 7 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/cartesian/point_in_poly_crossings_multiply.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/cartesian/point_in_poly_franklin.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/cartesian/side_by_triangle.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/cartesian/turn_in_ring_winding.hpp | 15 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/comparable_distance_result.hpp | 4 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/compare.hpp | 4 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/concepts/within_concept.hpp | 6 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/convex_hull.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/convex_hull/cartesian.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/covered_by.hpp | 24 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/default_area_result.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/disjoint.hpp | 12 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/distance.hpp | 4 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/distance_result.hpp | 4 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/envelope.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/expand.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/geographic/area.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/geographic/buffer_end_round.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/geographic/disjoint_segment_box.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/geographic/distance_cross_track_box_box.hpp | 12 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/geographic/distance_cross_track_point_box.hpp | 6 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/geographic/envelope.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/geographic/envelope_segment.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/geographic/expand_segment.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/geographic/intersection.hpp | 12 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/intersection_result.hpp | 17 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/intersection_strategies.hpp | 22 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/normalize.hpp | 21 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/relate.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/side_info.hpp | 8 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/spherical/area.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/spherical/closest_points_pt_seg.hpp | 30 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/spherical/disjoint_segment_box.hpp | 12 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/spherical/distance_cross_track_box_box.hpp | 18 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/spherical/distance_cross_track_point_box.hpp | 12 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/spherical/distance_haversine.hpp | 16 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/spherical/distance_segment_box.hpp | 5 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/spherical/envelope.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/spherical/envelope_box.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/spherical/envelope_multipoint.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/spherical/envelope_point.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/spherical/envelope_segment.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/spherical/expand_box.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/spherical/expand_point.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/spherical/expand_segment.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/spherical/intersection.hpp | 12 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/spherical/point_in_poly_winding.hpp | 13 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/spherical/point_order.hpp | 5 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/strategies.hpp | 1 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/strategy_transform.hpp | 5 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/transform/map_transformer.hpp | 6 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/transform/matrix_transformers.hpp | 17 BH-1.87.0-1/BH/inst/include/boost/geometry/strategies/within.hpp | 28 BH-1.87.0-1/BH/inst/include/boost/geometry/strategy/relate.hpp | 11 BH-1.87.0-1/BH/inst/include/boost/geometry/strategy/spherical/envelope_multipoint.hpp | 4 BH-1.87.0-1/BH/inst/include/boost/geometry/strategy/spherical/envelope_point.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategy/spherical/envelope_segment.hpp | 12 BH-1.87.0-1/BH/inst/include/boost/geometry/strategy/spherical/expand_box.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/geometry/strategy/spherical/expand_point.hpp | 13 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BH-1.87.0-1/BH/inst/include/boost/math/quadrature/detail/ooura_fourier_integrals_detail.hpp | 14 BH-1.87.0-1/BH/inst/include/boost/math/quadrature/detail/sinh_sinh_detail.hpp | 889 + BH-1.87.0-1/BH/inst/include/boost/math/quadrature/detail/tanh_sinh_detail.hpp | 26 BH-1.87.0-1/BH/inst/include/boost/math/quadrature/exp_sinh.hpp | 86 BH-1.87.0-1/BH/inst/include/boost/math/quadrature/gauss.hpp | 1126 -- BH-1.87.0-1/BH/inst/include/boost/math/quadrature/gauss_kronrod.hpp | 1819 +-- BH-1.87.0-1/BH/inst/include/boost/math/quadrature/sinh_sinh.hpp | 33 BH-1.87.0-1/BH/inst/include/boost/math/quaternion.hpp | 98 BH-1.87.0-1/BH/inst/include/boost/math/special_functions.hpp | 3 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/acosh.hpp | 4 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/airy.hpp | 56 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/asinh.hpp | 4 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/atanh.hpp | 22 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/bernoulli.hpp | 4 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/bessel.hpp | 279 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/bessel_iterators.hpp | 5 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/bessel_prime.hpp | 40 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/beta.hpp | 225 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/binomial.hpp | 24 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/cbrt.hpp | 52 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/chebyshev.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/cos_pi.hpp | 50 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/daubechies_scaling.hpp | 14 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/daubechies_wavelet.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/airy_ai_bi_zero.hpp | 44 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/bernoulli_details.hpp | 16 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/bessel_derivatives_linear.hpp | 36 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/bessel_i0.hpp | 144 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/bessel_i1.hpp | 114 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/bessel_ik.hpp | 214 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/bessel_j0.hpp | 67 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/bessel_j1.hpp | 52 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/bessel_jn.hpp | 20 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/bessel_jy.hpp | 72 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/bessel_jy_asym.hpp | 25 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/bessel_jy_derivatives_series.hpp | 5 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/bessel_jy_series.hpp | 36 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/bessel_jy_zero.hpp | 90 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/bessel_k0.hpp | 114 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/bessel_k1.hpp | 126 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/bessel_kn.hpp | 19 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/bessel_y0.hpp | 65 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/bessel_y1.hpp | 57 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/bessel_yn.hpp | 13 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/erf_inv.hpp | 210 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/fp_traits.hpp | 75 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/gamma_inva.hpp | 28 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/hypergeometric_1F1_bessel.hpp | 14 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/hypergeometric_pFq_checked_series.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/ibeta_inv_ab.hpp | 88 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/ibeta_inverse.hpp | 137 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/iconv.hpp | 11 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/igamma_inverse.hpp | 65 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/igamma_large.hpp | 122 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/lgamma_small.hpp | 37 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/polygamma.hpp | 4 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/round_fwd.hpp | 49 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/t_distribution_inv.hpp | 44 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/detail/unchecked_factorial.hpp | 216 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/digamma.hpp | 152 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/ellint_1.hpp | 111 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/ellint_2.hpp | 73 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/ellint_3.hpp | 44 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/ellint_d.hpp | 24 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/ellint_rc.hpp | 18 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/ellint_rd.hpp | 45 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/ellint_rf.hpp | 29 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/ellint_rg.hpp | 32 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/ellint_rj.hpp | 138 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/erf.hpp | 302 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/expint.hpp | 177 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/expm1.hpp | 98 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/factorials.hpp | 31 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/fibonacci.hpp | 6 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/fpclassify.hpp | 165 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/gamma.hpp | 803 + BH-1.87.0-1/BH/inst/include/boost/math/special_functions/gegenbauer.hpp | 23 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/hankel.hpp | 62 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/hermite.hpp | 14 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/heuman_lambda.hpp | 26 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/hypergeometric_1F1.hpp | 8 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/hypergeometric_pFq.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/hypot.hpp | 20 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/jacobi_zeta.hpp | 24 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/lambert_w.hpp | 4 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/lanczos.hpp | 679 - BH-1.87.0-1/BH/inst/include/boost/math/special_functions/legendre.hpp | 5 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/log1p.hpp | 77 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/math_fwd.hpp | 687 - BH-1.87.0-1/BH/inst/include/boost/math/special_functions/modf.hpp | 23 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/next.hpp | 43 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/owens_t.hpp | 28 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/pow.hpp | 23 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/powm1.hpp | 64 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/round.hpp | 139 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/rsqrt.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/sign.hpp | 75 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/sin_pi.hpp | 66 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/sinc.hpp | 32 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/sinhc.hpp | 23 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/sqrt1pm1.hpp | 5 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/trigamma.hpp | 103 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/trunc.hpp | 173 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/ulp.hpp | 1 BH-1.87.0-1/BH/inst/include/boost/math/special_functions/zeta.hpp | 4 BH-1.87.0-1/BH/inst/include/boost/math/statistics/detail/single_pass.hpp | 10 BH-1.87.0-1/BH/inst/include/boost/math/statistics/signal_statistics.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/math/tools/array.hpp |only BH-1.87.0-1/BH/inst/include/boost/math/tools/assert.hpp | 17 BH-1.87.0-1/BH/inst/include/boost/math/tools/atomic.hpp | 4 BH-1.87.0-1/BH/inst/include/boost/math/tools/big_constant.hpp | 16 BH-1.87.0-1/BH/inst/include/boost/math/tools/centered_continued_fraction.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/math/tools/complex.hpp | 41 BH-1.87.0-1/BH/inst/include/boost/math/tools/condition_numbers.hpp | 6 BH-1.87.0-1/BH/inst/include/boost/math/tools/config.hpp | 406 BH-1.87.0-1/BH/inst/include/boost/math/tools/convert_from_string.hpp | 11 BH-1.87.0-1/BH/inst/include/boost/math/tools/cstdint.hpp |only BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner1_10.hpp | 22 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner1_11.hpp | 24 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner1_12.hpp | 26 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner1_13.hpp | 28 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner1_14.hpp | 30 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner1_15.hpp | 32 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner1_16.hpp | 34 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner1_17.hpp | 36 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner1_18.hpp | 38 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner1_19.hpp | 40 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner1_2.hpp | 6 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner1_20.hpp | 42 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner1_3.hpp | 8 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner1_4.hpp | 10 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner1_5.hpp | 12 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner1_6.hpp | 14 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner1_7.hpp | 16 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner1_8.hpp | 18 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner1_9.hpp | 20 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner2_10.hpp | 22 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner2_11.hpp | 24 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner2_12.hpp | 26 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner2_13.hpp | 28 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner2_14.hpp | 30 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner2_15.hpp | 32 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner2_16.hpp | 34 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner2_17.hpp | 36 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner2_18.hpp | 38 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner2_19.hpp | 40 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner2_2.hpp | 10 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner2_20.hpp | 42 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner2_3.hpp | 10 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner2_4.hpp | 10 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner2_5.hpp | 12 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner2_6.hpp | 14 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner2_7.hpp | 16 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner2_8.hpp | 18 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner2_9.hpp | 20 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner3_10.hpp | 22 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner3_11.hpp | 24 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner3_12.hpp | 26 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner3_13.hpp | 28 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner3_14.hpp | 30 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner3_15.hpp | 32 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner3_16.hpp | 34 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner3_17.hpp | 36 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner3_18.hpp | 38 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner3_19.hpp | 40 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner3_2.hpp | 10 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner3_20.hpp | 42 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner3_3.hpp | 10 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner3_4.hpp | 10 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner3_5.hpp | 12 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner3_6.hpp | 14 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner3_7.hpp | 16 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner3_8.hpp | 18 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/polynomial_horner3_9.hpp | 20 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/rational_horner1_10.hpp | 40 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/rational_horner1_11.hpp | 44 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/rational_horner1_12.hpp | 48 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/rational_horner1_13.hpp | 52 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/rational_horner1_14.hpp | 56 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/rational_horner1_15.hpp | 60 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/rational_horner1_16.hpp | 64 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/rational_horner1_17.hpp | 68 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/rational_horner1_18.hpp | 72 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/rational_horner1_19.hpp | 76 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/rational_horner1_2.hpp | 8 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/rational_horner1_20.hpp | 80 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/rational_horner1_3.hpp | 12 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/rational_horner1_4.hpp | 16 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/rational_horner1_5.hpp | 20 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/rational_horner1_6.hpp | 24 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/rational_horner1_7.hpp | 28 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/rational_horner1_8.hpp | 32 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/rational_horner1_9.hpp | 36 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/rational_horner2_10.hpp | 34 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/rational_horner2_11.hpp | 38 BH-1.87.0-1/BH/inst/include/boost/math/tools/detail/rational_horner2_12.hpp | 42 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BH-1.87.0-1/BH/inst/include/boost/variant/recursive_wrapper_fwd.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/variant/variant.hpp | 82 BH-1.87.0-1/BH/inst/include/boost/variant/variant_fwd.hpp | 45 BH-1.87.0-1/BH/inst/include/boost/variant2/variant.hpp | 16 BH-1.87.0-1/BH/inst/include/boost/version.hpp | 4 BH-1.87.0-1/BH/inst/include/boost/winapi/get_proc_address.hpp | 13 BH-1.87.0-1/BH/inst/include/boost/xpressive/detail/utility/counted_base.hpp | 2 BH-1.87.0-1/BH/inst/include/boost/xpressive/detail/utility/tracking_ptr.hpp | 4 BH-1.87.0-1/BH/inst/include/boost/xpressive/xpressive_static.hpp | 2 2530 files changed, 51383 insertions(+), 54083 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization, Stochastic dominance and Advanced Monte Carlo sampling. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole [aut, cre],
Roberto Spadim [ctb]
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 10.9.5 dated 2024-12-16 and 10.9.6 dated 2024-12-17
DESCRIPTION | 6 MD5 | 16 - R/NNS_MC.R | 27 + R/NNS_meboot.R | 447 ++++++++++++++++----------------- README.md | 4 inst/doc/NNSvignette_Sampling.html | 2 man/NNS.MC.Rd | 2 man/NNS.meboot.Rd | 9 vignettes/images/NNSmc_1_tgt_drift.png |binary 9 files changed, 260 insertions(+), 253 deletions(-)
Title: Get Water Attributes Visually in R
Description: Provides methods to Get Water Attributes Visually in R ('gwavr'). This allows the user to point and click on areas within the United States and get back hydrological data, e.g. flowlines, catchments, basin boundaries, comids, etc.
Author: Joshua Erickson [aut, cre]
Maintainer: Joshua Erickson <joshualerickson@gmail.com>
Diff between gwavr versions 0.3.1 dated 2024-05-10 and 0.3.2 dated 2024-12-17
DESCRIPTION | 12 MD5 | 28 NAMESPACE | 4 NEWS.md | 12 R/globals.R | 16 R/modules.R | 3682 ++++++++++++++++---------------- R/noaatlas.R |only R/streamnetwork.R | 4 R/utils.R | 142 + README.md | 152 - inst/www/pf.png |only man/get_noaatlas.Rd |only man/get_noaatlas_interactively.Rd |only man/get_noaatlas_png.Rd |only man/get_stream_network_interactively.Rd | 4 man/noaatlasMod.Rd |only man/noaatlasModUI.Rd |only tests/testthat/test-nldi.R | 116 - tests/testthat/test-noaa.R |only 19 files changed, 2237 insertions(+), 1935 deletions(-)
Title: Biodiversity Data Cleaning
Description: It brings together several aspects of biodiversity
data-cleaning in one place. 'bdc' is organized in thematic modules
related to different biodiversity dimensions, including 1) Merge
datasets: standardization and integration of different datasets; 2)
Pre-filter: flagging and removal of invalid or non-interpretable
information, followed by data amendments; 3) Taxonomy: cleaning,
parsing, and harmonization of scientific names from several taxonomic
groups against taxonomic databases locally stored through the
application of exact and partial matching algorithms; 4) Space:
flagging of erroneous, suspect, and low-precision geographic
coordinates; and 5) Time: flagging and, whenever possible, correction
of inconsistent collection date. In addition, it contains
features to visualize, document, and report data quality – which is
essential for making data quality assessment transparent and
reproducible. The reference for the methodology is Bruno et al. (2022)
<doi:10.1111/2041-210X.13868> [...truncated...]
Author: Bruno Ribeiro [aut, cre] ,
Santiago Velazco [aut] ,
Karlo Guidoni-Martins [aut] ,
Geiziane Tessarolo [aut] ,
Lucas Jardim [aut] ,
Steven Bachman [ctb] ,
Rafael Loyola [ctb]
Maintainer: Bruno Ribeiro <ribeiro.brr@gmail.com>
Diff between bdc versions 1.1.4 dated 2023-03-13 and 1.1.5 dated 2024-12-17
bdc-1.1.4/bdc/build |only bdc-1.1.4/bdc/inst/doc |only bdc-1.1.4/bdc/vignettes |only bdc-1.1.5/bdc/DESCRIPTION | 25 bdc-1.1.5/bdc/MD5 | 267 bdc-1.1.5/bdc/NAMESPACE | 268 bdc-1.1.5/bdc/NEWS.md | 144 bdc-1.1.5/bdc/R/bdc_basisOfRecords_notStandard.R | 208 bdc-1.1.5/bdc/R/bdc_clean_duplicates.R | 150 bdc-1.1.5/bdc/R/bdc_clean_names.R | 1946 - bdc-1.1.5/bdc/R/bdc_coord_trans.R | 196 bdc-1.1.5/bdc/R/bdc_coordinates_country_inconsistent.R | 442 bdc-1.1.5/bdc/R/bdc_coordinates_empty.R | 143 bdc-1.1.5/bdc/R/bdc_coordinates_from_locality.R | 246 bdc-1.1.5/bdc/R/bdc_coordinates_outOfRange.R | 136 bdc-1.1.5/bdc/R/bdc_coordinates_precision.R | 166 bdc-1.1.5/bdc/R/bdc_coordinates_transposed.R | 438 bdc-1.1.5/bdc/R/bdc_correct_coordinates.R | 372 bdc-1.1.5/bdc/R/bdc_country_from_coordinates.R | 333 bdc-1.1.5/bdc/R/bdc_country_standardized.R | 196 bdc-1.1.5/bdc/R/bdc_create_dir.R | 48 bdc-1.1.5/bdc/R/bdc_create_figures.R | 1087 - bdc-1.1.5/bdc/R/bdc_create_report.R | 1066 bdc-1.1.5/bdc/R/bdc_eventDate_empty.R | 106 bdc-1.1.5/bdc/R/bdc_filter_name.R | 210 bdc-1.1.5/bdc/R/bdc_filter_out_flags.R | 118 bdc-1.1.5/bdc/R/bdc_filter_out_names.R | 212 bdc-1.1.5/bdc/R/bdc_get_world_map.R | 88 bdc-1.1.5/bdc/R/bdc_query_names_taxadb.R | 1244 - bdc-1.1.5/bdc/R/bdc_quickmap.R | 299 bdc-1.1.5/bdc/R/bdc_return_names.R | 92 bdc-1.1.5/bdc/R/bdc_scientificName_empty.R | 98 bdc-1.1.5/bdc/R/bdc_standardize_country.R | 316 bdc-1.1.5/bdc/R/bdc_standardize_datasets.R | 638 bdc-1.1.5/bdc/R/bdc_stdz_cntr.R | 231 bdc-1.1.5/bdc/R/bdc_suggest_names_taxadb.R | 307 bdc-1.1.5/bdc/R/bdc_summary_col.R | 132 bdc-1.1.5/bdc/R/bdc_year_from_eventDate.R | 98 bdc-1.1.5/bdc/R/bdc_year_outOfRange.R | 198 bdc-1.1.5/bdc/R/utils-pipe.R | 28 bdc-1.1.5/bdc/R/utils.R | 78 bdc-1.1.5/bdc/README.md | 401 bdc-1.1.5/bdc/inst/WORDLIST | 226 bdc-1.1.5/bdc/inst/extdata/Config/DatabaseInfo.csv | 20 bdc-1.1.5/bdc/inst/extdata/Config/DatabaseInfo_description.csv | 34 bdc-1.1.5/bdc/inst/extdata/countries_names/country_names.txt |10773 +++++----- bdc-1.1.5/bdc/inst/extdata/countries_names/reword-countries.csv | 26 bdc-1.1.5/bdc/inst/extdata/encoding-chars.txt | 10 bdc-1.1.5/bdc/inst/extdata/input_files/at_epiphytes.csv | 42 bdc-1.1.5/bdc/inst/extdata/input_files/bien.csv | 42 bdc-1.1.5/bdc/inst/extdata/input_files/dryflor.csv | 42 bdc-1.1.5/bdc/inst/extdata/input_files/gbif.csv | 42 bdc-1.1.5/bdc/inst/extdata/input_files/icmbio.csv | 42 bdc-1.1.5/bdc/inst/extdata/input_files/idigbio.csv | 42 bdc-1.1.5/bdc/inst/extdata/input_files/neotroptree.csv | 42 bdc-1.1.5/bdc/inst/extdata/input_files/sibbr.csv | 42 bdc-1.1.5/bdc/inst/extdata/input_files/specieslink.csv | 42 bdc-1.1.5/bdc/inst/extdata/outpus_vignettes/00_merged_database.csv | 362 bdc-1.1.5/bdc/inst/extdata/outpus_vignettes/01_Report_Prefilter.csv | 16 bdc-1.1.5/bdc/inst/extdata/outpus_vignettes/01_prefilter_database.csv | 232 bdc-1.1.5/bdc/inst/extdata/outpus_vignettes/02_Report_taxonomy.csv | 18 bdc-1.1.5/bdc/inst/extdata/outpus_vignettes/02_taxonomy_database.csv | 232 bdc-1.1.5/bdc/inst/extdata/outpus_vignettes/03_Report_space.csv | 26 bdc-1.1.5/bdc/inst/extdata/outpus_vignettes/03_space_database.csv | 232 bdc-1.1.5/bdc/inst/extdata/outpus_vignettes/04_Report_time.csv | 14 bdc-1.1.5/bdc/inst/extdata/outpus_vignettes/04_time_database.csv | 232 bdc-1.1.5/bdc/inst/extdata/outpus_vignettes/05_cleaned_database.csv | 92 bdc-1.1.5/bdc/inst/extdata/outpus_vignettes/example_clean_names.csv | 232 bdc-1.1.5/bdc/inst/extdata/outpus_vignettes/example_query_names.csv | 232 bdc-1.1.5/bdc/man/bdc_basisOfRecords_notStandard.Rd | 134 bdc-1.1.5/bdc/man/bdc_clean_names.Rd | 133 bdc-1.1.5/bdc/man/bdc_coordinates_country_inconsistent.Rd | 174 bdc-1.1.5/bdc/man/bdc_coordinates_empty.Rd | 104 bdc-1.1.5/bdc/man/bdc_coordinates_from_locality.Rd | 142 bdc-1.1.5/bdc/man/bdc_coordinates_outOfRange.Rd | 110 bdc-1.1.5/bdc/man/bdc_coordinates_precision.Rd | 104 bdc-1.1.5/bdc/man/bdc_coordinates_transposed.Rd | 230 bdc-1.1.5/bdc/man/bdc_country_from_coordinates.Rd | 114 bdc-1.1.5/bdc/man/bdc_country_standardized.Rd | 104 bdc-1.1.5/bdc/man/bdc_create_figures.Rd | 143 bdc-1.1.5/bdc/man/bdc_create_report.Rd | 118 bdc-1.1.5/bdc/man/bdc_eventDate_empty.Rd | 82 bdc-1.1.5/bdc/man/bdc_filter_out_flags.Rd | 76 bdc-1.1.5/bdc/man/bdc_filter_out_names.Rd | 142 bdc-1.1.5/bdc/man/bdc_query_names_taxadb.Rd | 398 bdc-1.1.5/bdc/man/bdc_quickmap.Rd | 114 bdc-1.1.5/bdc/man/bdc_scientificName_empty.Rd | 82 bdc-1.1.5/bdc/man/bdc_standardize_datasets.Rd | 149 bdc-1.1.5/bdc/man/bdc_summary_col.Rd | 66 bdc-1.1.5/bdc/man/bdc_year_from_eventDate.Rd | 80 bdc-1.1.5/bdc/man/bdc_year_outOfRange.Rd | 110 bdc-1.1.5/bdc/man/pipe.Rd | 40 bdc-1.1.5/bdc/tests/testthat.R | 8 bdc-1.1.5/bdc/tests/testthat/test-bdc_basisOfRecords_notStandard.R | 106 bdc-1.1.5/bdc/tests/testthat/test-bdc_clean_duplicates.R | 132 bdc-1.1.5/bdc/tests/testthat/test-bdc_clean_names.R | 170 bdc-1.1.5/bdc/tests/testthat/test-bdc_coordinates_country_inconsistent.R | 145 bdc-1.1.5/bdc/tests/testthat/test-bdc_coordinates_empty.R | 106 bdc-1.1.5/bdc/tests/testthat/test-bdc_coordinates_from_locality.R | 22 bdc-1.1.5/bdc/tests/testthat/test-bdc_coordinates_outOfRange.R | 42 bdc-1.1.5/bdc/tests/testthat/test-bdc_coordinates_precision.R | 48 bdc-1.1.5/bdc/tests/testthat/test-bdc_coordinates_transposed.R | 237 bdc-1.1.5/bdc/tests/testthat/test-bdc_correct_coordinates.R | 86 bdc-1.1.5/bdc/tests/testthat/test-bdc_country_from_coordinates.R | 177 bdc-1.1.5/bdc/tests/testthat/test-bdc_create_dir.R | 24 bdc-1.1.5/bdc/tests/testthat/test-bdc_create_figures.R | 65 bdc-1.1.5/bdc/tests/testthat/test-bdc_create_report.R | 76 bdc-1.1.5/bdc/tests/testthat/test-bdc_eventDate_empty.R | 66 bdc-1.1.5/bdc/tests/testthat/test-bdc_filter_name.R | 78 bdc-1.1.5/bdc/tests/testthat/test-bdc_filter_out_flags.R | 34 bdc-1.1.5/bdc/tests/testthat/test-bdc_filter_out_names.R | 202 bdc-1.1.5/bdc/tests/testthat/test-bdc_get_world_map.R | 21 bdc-1.1.5/bdc/tests/testthat/test-bdc_query_names_taxadb.R | 323 bdc-1.1.5/bdc/tests/testthat/test-bdc_quickmap.R | 28 bdc-1.1.5/bdc/tests/testthat/test-bdc_return_names.R | 56 bdc-1.1.5/bdc/tests/testthat/test-bdc_scientificName_empty.R | 46 bdc-1.1.5/bdc/tests/testthat/test-bdc_standardize_country.R | 74 bdc-1.1.5/bdc/tests/testthat/test-bdc_standardize_datasets.R | 438 bdc-1.1.5/bdc/tests/testthat/test-bdc_suggest_names_taxadb.R | 465 bdc-1.1.5/bdc/tests/testthat/test-bdc_summary_col.R | 22 bdc-1.1.5/bdc/tests/testthat/test-bdc_year_from_eventDate.R | 38 bdc-1.1.5/bdc/tests/testthat/test-bdc_year_outOfRange.R | 44 122 files changed, 16419 insertions(+), 16067 deletions(-)
Title: Decorate a 'ggplot' with Associated Information
Description: For many times, we are not just aligning plots as what 'cowplot' and 'patchwork' did. Users would like to align associated information that requires axes to be exactly matched in subplots, e.g. hierarchical clustering with a heatmap. Inspired by the 'Method 2' in 'ggtree' (G Yu (2018) <doi:10.1093/molbev/msy194>), 'aplot' provides utilities to aligns associated subplots to a main plot at different sides (left, right, top and bottom) with axes exactly matched.
Author: Guangchuang Yu [aut, cre] ,
Shuangbin Xu [ctb] ,
Thomas Hackl [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between aplot versions 0.2.3 dated 2024-06-17 and 0.2.4 dated 2024-12-17
DESCRIPTION | 10 ++++---- MD5 | 11 +++++---- NEWS.md | 5 ++++ build |only man/aplot-package.Rd | 58 +++++++++++++++++++++++++-------------------------- man/aplot_label.Rd | 54 +++++++++++++++++++++++------------------------ man/gglistGrob.Rd | 34 ++++++++++++++--------------- 7 files changed, 89 insertions(+), 83 deletions(-)
Title: Approximate Optimal Experimental Designs Using Generalised
Linear Mixed Models
Description: Optimal design analysis algorithms for any study design that can be represented or
modelled as a generalised linear mixed model including cluster randomised trials,
cohort studies, spatial and temporal epidemiological studies, and split-plot designs.
See <https://github.com/samuel-watson/glmmrBase/blob/master/README.md> for a
detailed manual on model specification. A detailed discussion of the methods in this
package can be found in Watson, Hemming, and Girling (2023) <doi:10.1177/09622802231202379>.
Author: Sam Watson [aut, cre],
Yi Pan [aut]
Maintainer: Sam Watson <S.I.Watson@bham.ac.uk>
Diff between glmmrOptim versions 0.3.5 dated 2024-06-02 and 0.3.6 dated 2024-12-17
glmmrOptim-0.3.5/glmmrOptim/src/openmp_utils.cpp |only glmmrOptim-0.3.6/glmmrOptim/DESCRIPTION | 8 glmmrOptim-0.3.6/glmmrOptim/MD5 | 19 - glmmrOptim-0.3.6/glmmrOptim/R/R6designspace.R | 38 ++- glmmrOptim-0.3.6/glmmrOptim/R/RcppExports.R | 20 -- glmmrOptim-0.3.6/glmmrOptim/build/partial.rdb |binary glmmrOptim-0.3.6/glmmrOptim/inst/include/optim/optimclass.h | 2 glmmrOptim-0.3.6/glmmrOptim/inst/include/optim/optimderivatives.h | 4 glmmrOptim-0.3.6/glmmrOptim/man/apportion.Rd | 98 +++++----- glmmrOptim-0.3.6/glmmrOptim/src/RcppExports.cpp | 24 +- glmmrOptim-0.3.6/glmmrOptim/src/gd_search.cpp | 34 +++ 11 files changed, 141 insertions(+), 106 deletions(-)
Title: Build a Docker Image from a Directory or Project
Description: Simple utilities to generate a Dockerfile from a directory or
project, build the corresponding Docker image, and push the image to
DockerHub.
Author: Daniel Molitor [aut, cph, cre]
Maintainer: Daniel Molitor <molitdj97@gmail.com>
Diff between tugboat versions 0.1.0 dated 2024-12-09 and 0.1.1 dated 2024-12-17
DESCRIPTION | 8 +-- MD5 | 20 ++++----- NEWS.md | 20 +++++++++ R/build.R | 4 - R/create.R | 53 +++++------------------ R/dockerfile.R |only R/utils.R |only README.md | 95 ++++++++++++++++++++++++++++++++----------- man/build.Rd | 4 - man/create.Rd | 22 ++++----- tests/testthat/test-build.R | 89 ++++++++++++++++++++++++++++++++++++++-- tests/testthat/test-create.R | 9 +++- 12 files changed, 226 insertions(+), 98 deletions(-)
Title: Statistical Evaluation of UMAP Dimensionality Reductions
Description: A metric expressing the quality of a UMAP layout. This is a
package that contains the Saturn_coefficient() function that reads an
input matrix, its dimensionality reduction produced by UMAP, and
evaluates the quality of this dimensionality reduction by producing a
real value in the [0; 1] interval. We call this real value Saturn
coefficient. A higher value means better dimensionality reduction; a
lower value means worse dimensionality reduction.
Reference: Davide Chicco et al. "The Saturn coefficient for evaluating
the quality of UMAP dimensionality reduction results" (2025, in preparation).
Author: Davide Chicco [aut, cre]
Maintainer: Davide Chicco <davidechicco@davidechicco.it>
Diff between SaturnCoefficient versions 1.2 dated 2024-12-11 and 1.3 dated 2024-12-17
SaturnCoefficient-1.2/SaturnCoefficient/man/three_metrics.Rd |only SaturnCoefficient-1.3/SaturnCoefficient/DESCRIPTION | 12 +++++----- SaturnCoefficient-1.3/SaturnCoefficient/MD5 | 8 +++--- SaturnCoefficient-1.3/SaturnCoefficient/NAMESPACE | 2 - SaturnCoefficient-1.3/SaturnCoefficient/R/Saturn_coefficient.r | 5 ++-- SaturnCoefficient-1.3/SaturnCoefficient/man/calculatesSaturnContinuityTrustworthiness.Rd |only 6 files changed, 14 insertions(+), 13 deletions(-)
More information about SaturnCoefficient at CRAN
Permanent link
Title: Geospatial Data and Maps for New South Wales, Australia
Description: Geospatial data for creating maps of New South Wales (NSW),
Australia, and some helpers to work with common problems like normalising
postcodes. Registers its data with 'cartographer'.
Author: Carl Suster [aut, cre] ,
Western Sydney Local Health District, NSW Health [cph]
Maintainer: Carl Suster <Carl.Suster@health.nsw.gov.au>
Diff between nswgeo versions 0.4.0 dated 2024-01-29 and 0.5.0 dated 2024-12-17
DESCRIPTION | 10 ++++---- LICENSE | 2 - MD5 | 42 +++++++++++++++++----------------- NEWS.md | 6 ++++ R/data.R | 29 ++++++++++++++++++----- R/utils.R | 16 ++++++++---- R/zzz.R | 2 - README.md | 40 +++++++++++++++++++++++++++++--- data/act.rda |binary data/jbt.rda |binary data/lga_nsw.rda |binary data/lhi.rda |binary data/nsw.rda |binary data/poa_lhd_concordance.rda |binary data/poa_nsw.rda |binary man/crs_gda2020.Rd | 6 +++- man/figures/README-cartographer-1.png |binary man/figures/README-ggplot-1.png |binary man/lhd.Rd | 5 +++- man/nsw.Rd | 4 +-- man/nsw_admin.Rd | 17 +++++++++++-- man/poa_lhd_concordance.Rd | 7 +++++ 22 files changed, 136 insertions(+), 50 deletions(-)
Title: Geographical Ecology and Conservation Knowledge Online
Description: Includes a collection of geographical analysis functions aimed primarily at ecology and conservation science studies, allowing processing of both point and raster data. Now integrates SPECTRE (<https://biodiversityresearch.org/spectre/>), a dataset of global geospatial threat data, developed by the authors.
Author: Vasco V. Branco [cre, aut] ,
Pedro Cardoso [aut] ,
Luis Correia [ctb]
Maintainer: Vasco V. Branco <vasco.branco@helsinki.fi>
Diff between gecko versions 1.0.0 dated 2023-11-23 and 1.0.1 dated 2024-12-17
gecko-1.0.0/gecko/README.md |only gecko-1.0.1/gecko/DESCRIPTION | 11 ++++++----- gecko-1.0.1/gecko/MD5 | 8 ++++---- gecko-1.0.1/gecko/R/aux_fn.R | 10 ++++++++-- gecko-1.0.1/gecko/R/outlier_fn.R | 2 +- gecko-1.0.1/gecko/man/figures |only 6 files changed, 19 insertions(+), 12 deletions(-)
Title: Robust Analytical Methods for Evaluating Educational
Interventions using Randomised Controlled Trials Designs
Description: Analysing data from evaluations of educational interventions using a randomised controlled trial design. Various analytical tools to perform sensitivity analysis using different methods are supported (e.g. frequentist models with bootstrapping and permutations options, Bayesian models). The included commands can be used for simple randomised trials, cluster randomised trials and multisite trials. The methods can also be used more widely beyond education trials. This package can be used to evaluate other intervention designs using Frequentist and Bayesian multilevel models.
Author: Germaine Uwimpuhwe [aut, cre],
Qing Zhang [aut],
Akansha Singh [aut],
Dimitris Vallis [aut],
Jochen Einbeck [aut],
Steve Higgins [aut],
ZhiMin Xiao [aut],
Ewoud De Troyer [aut],
Adetayo Kasim [aut]
Maintainer: Germaine Uwimpuhwe <germaine.uwimpuhwe@durham.ac.uk>
Diff between eefAnalytics versions 1.1.3 dated 2024-10-20 and 1.1.4 dated 2024-12-17
eefAnalytics-1.1.3/eefAnalytics/R/hello.R |only eefAnalytics-1.1.4/eefAnalytics/DESCRIPTION | 8 eefAnalytics-1.1.4/eefAnalytics/MD5 | 44 eefAnalytics-1.1.4/eefAnalytics/NAMESPACE | 158 - eefAnalytics-1.1.4/eefAnalytics/NEWS.md | 2 eefAnalytics-1.1.4/eefAnalytics/R/crtBayes.R | 442 +-- eefAnalytics-1.1.4/eefAnalytics/R/mstBayes.R | 493 +--- eefAnalytics-1.1.4/eefAnalytics/R/mstFREQ.R | 1222 +++++----- eefAnalytics-1.1.4/eefAnalytics/R/srtBayes.R | 289 +- eefAnalytics-1.1.4/eefAnalytics/build/vignette.rds |binary eefAnalytics-1.1.4/eefAnalytics/inst/doc/eefAnalytics.R | 2 eefAnalytics-1.1.4/eefAnalytics/inst/doc/eefAnalytics.Rmd | 87 eefAnalytics-1.1.4/eefAnalytics/inst/doc/eefAnalytics.html | 198 + eefAnalytics-1.1.4/eefAnalytics/inst/examples/crtBExample.R | 117 eefAnalytics-1.1.4/eefAnalytics/inst/examples/mstBExample.R | 24 eefAnalytics-1.1.4/eefAnalytics/inst/examples/srtBExample.R | 107 eefAnalytics-1.1.4/eefAnalytics/inst/jags/CRT.txt | 22 eefAnalytics-1.1.4/eefAnalytics/inst/jags/MLM_UNC.txt | 90 eefAnalytics-1.1.4/eefAnalytics/inst/jags/MST-DW-PF24GQEJ.txt |only eefAnalytics-1.1.4/eefAnalytics/inst/jags/MST.txt | 55 eefAnalytics-1.1.4/eefAnalytics/man/crtBayes.Rd | 226 - eefAnalytics-1.1.4/eefAnalytics/man/mstBayes.Rd | 60 eefAnalytics-1.1.4/eefAnalytics/man/srtBayes.Rd | 202 - eefAnalytics-1.1.4/eefAnalytics/vignettes/eefAnalytics.Rmd | 87 24 files changed, 1921 insertions(+), 2014 deletions(-)
Title: Make, Update, and Query Binary Causal Models
Description: Users can declare causal models over binary nodes, update beliefs about causal types given data, and calculate arbitrary queries. Updating is implemented in 'stan'. See Humphreys and Jacobs, 2023, Integrated Inferences (<DOI: 10.1017/9781316718636>) and Pearl, 2009 Causality (<DOI:10.1017/CBO9780511803161>).
Author: Clara Bicalho [ctb],
Jasper Cooper [ctb],
Macartan Humphreys [aut] ,
Till Tietz [aut, cre] ,
Alan Jacobs [aut],
Merlin Heidemanns [ctb],
Lily Medina [aut] ,
Julio Solis [ctb],
Georgiy Syunyaev [aut]
Maintainer: Till Tietz <ttietz2014@gmail.com>
Diff between CausalQueries versions 1.3.0 dated 2024-12-14 and 1.3.1 dated 2024-12-17
DESCRIPTION | 6 MD5 | 71 ++++----- NEWS.md | 7 R/query_model.R | 7 inst/doc/a-getting-started.Rmd | 169 +++++---------------- inst/doc/a-getting-started.html | 302 ++++++++++++++++++--------------------- inst/doc/b-plotting.Rmd | 2 inst/doc/b-plotting.html | 23 +- inst/doc/c-canonical-models.Rmd | 74 ++------- inst/doc/c-canonical-models.html | 148 ++++++++----------- inst/doc/d-front-door.Rmd | 16 +- inst/doc/d-front-door.html | 60 ++++--- inst/doc/e-posteriors.Rmd | 196 ++++++++++++------------- inst/doc/e-posteriors.html | 216 ++++++++++++++------------- vignettes/a-getting-started.Rmd | 169 +++++---------------- vignettes/b-plotting.Rmd | 2 vignettes/b-plotting.Rmd.orig | 2 vignettes/c-canonical-models.Rmd | 74 ++------- vignettes/d-front-door.Rmd | 16 +- vignettes/e-posteriors.Rmd | 196 ++++++++++++------------- vignettes/unnamed-chunk-10-1.png |binary vignettes/unnamed-chunk-11-1.png |binary vignettes/unnamed-chunk-12-1.png |binary vignettes/unnamed-chunk-13-1.png |only vignettes/unnamed-chunk-14-1.png |binary vignettes/unnamed-chunk-15-1.png |binary vignettes/unnamed-chunk-16-1.png |binary vignettes/unnamed-chunk-19-1.png |only vignettes/unnamed-chunk-2-1.png |binary vignettes/unnamed-chunk-21-1.png |binary vignettes/unnamed-chunk-23-1.png |only vignettes/unnamed-chunk-3-1.png |binary vignettes/unnamed-chunk-4-1.png |binary vignettes/unnamed-chunk-5-1.png |binary vignettes/unnamed-chunk-6-1.png |binary vignettes/unnamed-chunk-7-1.png |binary vignettes/unnamed-chunk-8-1.png |binary vignettes/unnamed-chunk-9-1.png |binary 38 files changed, 758 insertions(+), 998 deletions(-)
Title: Regression Toward the Mean
Description: In repeated measures studies with extreme large or small values it is common
that the subjects measurements on average are closer to the mean of the basic population.
Interpreting possible changes in the mean in such situations can lead to biased results
since the values were not randomly selected, they come from truncated sampling.
This method allows to estimate the range of means where treatment effects are likely to occur
when regression toward the mean is present.
Ostermann, T., Willich, Stefan N. & Luedtke, Rainer. (2008). Regression toward the mean - a detection method for unknown population mean based on Mee and Chua's algorithm. BMC Medical Research Methodology.<doi:10.1186/1471-2288-8-52>.
Acknowledgments: We would like to acknowledge "Lena Roth" and "Nico Steckhan" for the package's initial updates (Q3 2024) and continued supervision and guidance. Both have contributed to discussing and integrating these methods into the package, ensuring they are up-to-date and con [...truncated...]
Author: Daniela Recchia [aut, cre],
Thomas Ostermann [ctb],
Julian Stein [ctb]
Maintainer: Daniela Recchia <daniela.rodriguesrecchia@uni-wh.de>
Diff between regtomean versions 1.1 dated 2022-10-26 and 1.2 dated 2024-12-17
regtomean-1.1/regtomean/R/globals.R |only regtomean-1.2/regtomean/DESCRIPTION | 22 ++++--- regtomean-1.2/regtomean/LICENSE | 2 regtomean-1.2/regtomean/MD5 | 38 +++++++----- regtomean-1.2/regtomean/NAMESPACE | 36 ++++++----- regtomean-1.2/regtomean/R/cordata.R | 69 +++++++++++++--------- regtomean-1.2/regtomean/R/meechua_eff.CI.R | 80 ++++++++++++++++++++------ regtomean-1.2/regtomean/R/meechua_plot.R | 34 +++++++---- regtomean-1.2/regtomean/R/meechua_reg.R | 40 +++---------- regtomean-1.2/regtomean/R/plot_mu.R |only regtomean-1.2/regtomean/R/plot_t.R |only regtomean-1.2/regtomean/R/replicate_data.R | 36 +++-------- regtomean-1.2/regtomean/R/zzz.R |only regtomean-1.2/regtomean/README.md |only regtomean-1.2/regtomean/man/cordata.Rd | 14 ++-- regtomean-1.2/regtomean/man/language_test.Rd | 1 regtomean-1.2/regtomean/man/meechua_eff.CI.Rd | 35 +++++++---- regtomean-1.2/regtomean/man/meechua_plot.Rd | 34 ++++++++--- regtomean-1.2/regtomean/man/meechua_reg.Rd | 48 ++++++++++++--- regtomean-1.2/regtomean/man/plot_mu.Rd |only regtomean-1.2/regtomean/man/plot_t.Rd |only regtomean-1.2/regtomean/man/replicate_data.Rd | 61 ++++++++++++++----- regtomean-1.2/regtomean/tests |only 23 files changed, 346 insertions(+), 204 deletions(-)
Title: Feature Finder
Description: Finds features through a detailed analysis of model residuals using rpart classification and regression trees. Scans the residuals of a model across subsets of the data to identify areas where the model differs from the actual data.
Author: Richard Davis [aut, cre]
Maintainer: Richard Davis <davisconsulting@gmail.com>
Diff between featurefinder versions 1.1 dated 2018-12-03 and 1.2 dated 2024-12-17
featurefinder-1.1/featurefinder/data/examples.rda |only featurefinder-1.1/featurefinder/data/futuresdata.rda |only featurefinder-1.1/featurefinder/data/mpgdata.rda |only featurefinder-1.1/featurefinder/inst/doc/featurefinder.R |only featurefinder-1.1/featurefinder/inst/doc/featurefinder.Rmd |only featurefinder-1.1/featurefinder/inst/doc/featurefinder.html |only featurefinder-1.1/featurefinder/man/addFeatures.Rd |only featurefinder-1.1/featurefinder/man/dat.Rd |only featurefinder-1.1/featurefinder/man/dat0.Rd |only featurefinder-1.1/featurefinder/man/doAllFactors.Rd |only featurefinder-1.1/featurefinder/man/expr.Rd |only featurefinder-1.1/featurefinder/man/fileConn.Rd |only featurefinder-1.1/featurefinder/man/filename.Rd |only featurefinder-1.1/featurefinder/man/futuresdata.Rd |only featurefinder-1.1/featurefinder/man/i.Rd |only featurefinder-1.1/featurefinder/man/mainfaclevels.Rd |only featurefinder-1.1/featurefinder/man/maxFactorLevels.Rd |only featurefinder-1.1/featurefinder/man/mpgdata.Rd |only featurefinder-1.1/featurefinder/man/names.Rd |only featurefinder-1.1/featurefinder/man/pathterms.Rd |only featurefinder-1.1/featurefinder/man/runname.Rd |only featurefinder-1.1/featurefinder/man/splitlist.Rd |only featurefinder-1.1/featurefinder/man/t.Rd |only featurefinder-1.1/featurefinder/man/tree.Rd |only featurefinder-1.1/featurefinder/man/treeGenerationMinBucket.Rd |only featurefinder-1.1/featurefinder/man/treeSummaryMinBucket.Rd |only featurefinder-1.1/featurefinder/man/treeSummaryResidualMagnitudeThreshold.Rd |only featurefinder-1.1/featurefinder/man/treeSummaryResidualThreshold.Rd |only featurefinder-1.1/featurefinder/man/trees.Rd |only featurefinder-1.1/featurefinder/man/treesAll.Rd |only featurefinder-1.1/featurefinder/man/vars.Rd |only featurefinder-1.1/featurefinder/vignettes/featurefinder.Rmd |only featurefinder-1.1/featurefinder/vignettes/futuresdata.csv |only featurefinder-1.1/featurefinder/vignettes/mpgdata.csv |only featurefinder-1.1/featurefinder/vignettes/vignettefigures |only featurefinder-1.2/featurefinder/DESCRIPTION | 23 featurefinder-1.2/featurefinder/LICENSE | 4 featurefinder-1.2/featurefinder/MD5 | 72 featurefinder-1.2/featurefinder/NAMESPACE | 23 featurefinder-1.2/featurefinder/R/featurefinder.r | 1455 +++------- featurefinder-1.2/featurefinder/build/vignette.rds |binary featurefinder-1.2/featurefinder/data/mycsv.rda |only featurefinder-1.2/featurefinder/inst/doc/my-vignette.R | 5 featurefinder-1.2/featurefinder/inst/doc/my-vignette.Rmd | 5 featurefinder-1.2/featurefinder/inst/doc/my-vignette.html | 408 ++ featurefinder-1.2/featurefinder/inst/extdata/featurefinder.pdf |only featurefinder-1.2/featurefinder/inst/extdata/test |only featurefinder-1.2/featurefinder/man/data.Rd | 17 featurefinder-1.2/featurefinder/man/findFeatures.Rd | 166 - featurefinder-1.2/featurefinder/man/generateResidualCutoffCode.Rd | 12 featurefinder-1.2/featurefinder/man/generateTrees.Rd | 16 featurefinder-1.2/featurefinder/man/getVarAv.Rd | 6 featurefinder-1.2/featurefinder/man/parseSplits.Rd | 6 featurefinder-1.2/featurefinder/man/printResiduals.Rd | 22 featurefinder-1.2/featurefinder/man/saveTree.Rd | 21 featurefinder-1.2/featurefinder/vignettes/my-vignette.Rmd |only 56 files changed, 970 insertions(+), 1291 deletions(-)
Title: Deductive Rational Method
Description: Apply the Deductive Rational Method to a monthly series of flow or precipitation data to fill in missing data. The method is as described in: Campos, D.F., (1984, ISBN:9686194444).
Author: Alonso Arriagada [aut, cre]
Maintainer: Alonso Arriagada <alonso.arriagada@usach.cl>
Diff between DeductiveR versions 1.0.0 dated 2021-12-03 and 1.1.0 dated 2024-12-17
DESCRIPTION | 14 + MD5 | 31 ++-- NAMESPACE | 4 R/DR_SVC_package.R |only R/DR_boxplot_package.R |only R/DR_package.R | 3 R/DR_plot_package.R | 1 R/data.R |only build/vignette.rds |binary data |only inst/doc/DeductiveR.R | 2 inst/doc/DeductiveR.Rmd | 5 inst/doc/DeductiveR.html | 360 ++++++++++++++++++++++++++++++++++++++--------- man/DR.Rd | 34 ++-- man/DR_SVC.Rd |only man/DR_boxplot.Rd |only man/DR_plot.Rd | 2 man/DR_stats.Rd | 2 man/data.Rd |only vignettes/DeductiveR.Rmd | 5 20 files changed, 353 insertions(+), 110 deletions(-)
Title: Interface with 'Nominatim' API Service
Description: Lite interface for getting data from 'OSM' service
'Nominatim' <https://nominatim.org/release-docs/latest/>. Extract
coordinates from addresses, find places near a set of coordinates and
return spatial objects on 'sf' format.
Author: Diego Hernangomez [aut, cre, cph]
,
Jindra Lacko [ctb, rev] ,
Alex White [ctb],
OpenStreetMap [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between nominatimlite versions 0.4.1 dated 2024-07-19 and 0.4.2 dated 2024-12-17
DESCRIPTION | 8 - MD5 | 26 ++-- NEWS.md | 4 R/nominatim_check_access.R | 208 ++++++++++++++++---------------- README.md | 25 ++- build/vignette.rds |binary data/osm_amenities.rda |binary inst/doc/nominatimlite.Rmd | 12 - inst/doc/nominatimlite.html | 21 +-- inst/schemaorg.json | 4 man/figures/README-line-object-1.png |binary man/figures/README-pizzahut-1.png |binary man/figures/README-statue_liberty-1.png |binary vignettes/nominatimlite.Rmd | 12 - 14 files changed, 162 insertions(+), 158 deletions(-)
Title: Hyperparameter Optimization for 'mlr3'
Description: Hyperparameter optimization package of the 'mlr3' ecosystem.
It features highly configurable search spaces via the 'paradox'
package and finds optimal hyperparameter configurations for any 'mlr3'
learner. 'mlr3tuning' works with several optimization algorithms e.g.
Random Search, Iterated Racing, Bayesian Optimization (in 'mlr3mbo')
and Hyperband (in 'mlr3hyperband'). Moreover, it can automatically
optimize learners and estimate the performance of optimized models
with nested resampling.
Author: Marc Becker [cre, aut] ,
Michel Lang [aut] ,
Jakob Richter [aut] ,
Bernd Bischl [aut] ,
Daniel Schalk [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3tuning versions 1.2.1 dated 2024-11-26 and 1.3.0 dated 2024-12-17
DESCRIPTION | 37 ++++++++------- MD5 | 34 ++++++++------ NAMESPACE | 2 NEWS.md | 6 ++ R/ArchiveAsyncTuningFrozen.R |only R/ObjectiveTuningAsync.R | 6 -- R/TunerBatchIrace.R | 10 ++-- R/TuningInstanceAsyncMulticrit.R | 9 ++- R/TuningInstanceAsyncSingleCrit.R | 10 ++-- R/TuningInstanceBatchMulticrit.R | 10 ++-- R/TuningInstanceBatchSingleCrit.R | 10 ++-- R/mlr_callbacks.R | 22 +++++++++ R/zzz.R | 1 man/ArchiveAsyncTuningFrozen.Rd |only man/mlr3tuning.async_freeze_archive.Rd |only man/mlr_tuners_irace.Rd | 4 + tests/testthat/test_ArchiveAsyncTuningFrozen.R |only tests/testthat/test_TunerBatchIrace.R | 47 ++++++++++++++------ tests/testthat/test_TuningInstanceBatchSingleCrit.R | 37 +++++++++++++++ tests/testthat/test_mlr_callbacks.R | 37 +++++++++++++++ 20 files changed, 207 insertions(+), 75 deletions(-)
Title: Convert Digital Images into 'SpatRaster' Objects
Description: Generate 'SpatRaster' objects, as defined by the 'terra'
package, from digital images, using a specified spatial object as a
geographical reference.
Author: Diego Hernangomez [aut, cre, cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between rasterpic versions 0.2.5 dated 2024-04-12 and 0.2.6 dated 2024-12-17
DESCRIPTION | 12 +- MD5 | 30 +++--- NEWS.md | 96 ++++++++++--------- R/asp_ratio.R | 2 R/test_helpers.R | 26 ++--- R/utils.R | 240 ++++++++++++++++++++++++------------------------ README.md | 20 ++-- build/vignette.rds |binary inst/CITATION | 12 +- inst/doc/rasterpic.Rmd | 204 ++++++++++++++++++++-------------------- inst/img/UK_flag.png |binary inst/img/vertical.jpeg |binary inst/img/vertical.jpg |binary inst/schemaorg.json | 6 - tests/testthat.R | 4 vignettes/rasterpic.Rmd | 204 ++++++++++++++++++++-------------------- 16 files changed, 432 insertions(+), 424 deletions(-)
Title: Univariate Outlier Detection
Description: Detect outliers in one-dimensional data.
Author: Mark van der Loo [cre, aut]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between extremevalues versions 2.3.4 dated 2024-02-13 and 2.4.1 dated 2024-12-17
extremevalues-2.3.4/extremevalues/R/evGui.r |only extremevalues-2.3.4/extremevalues/man/evGui.Rd |only extremevalues-2.4.1/extremevalues/DESCRIPTION | 14 +++++++++----- extremevalues-2.4.1/extremevalues/MD5 | 12 +++++------- extremevalues-2.4.1/extremevalues/NAMESPACE | 5 ++--- extremevalues-2.4.1/extremevalues/NEWS | 4 ++++ extremevalues-2.4.1/extremevalues/build/vignette.rds |binary extremevalues-2.4.1/extremevalues/inst/doc/SN201003.pdf |binary 8 files changed, 20 insertions(+), 15 deletions(-)
Title: Spatial Analysis in Archaeology from Refitting Fragments
Description: Methods to analyse spatial units in archaeology from the relationships between refitting fragmented objects scattered in these units (e.g. stratigraphic layers). Graphs are used to model archaeological observations. The package is mainly based on the 'igraph' package for graph analysis. Functions can: 1) create, manipulate, and simulate fragmentation graphs, 2) measure the cohesion and admixture of archaeological spatial units, and 3) characterise the topology of a specific set of refitting relationships. Empirical datasets are provided as examples. Documentation about 'archeofrag' is provided by the vignette included in this package, by the accompanying scientific papers: Plutniak (2021, Journal of Archaeological Science, <doi:10.1016/j.jas.2021.105501>) and Plutniak (2022, Journal of Open Source Software, <doi:10.21105/joss.04335>). This package is complemented by a companion GUI application available at <https://analytics.huma-num.fr/Sebastien.Plutniak/archeofrag/> [...truncated...]
Author: Sebastien Plutniak [aut, cre]
Maintainer: Sebastien Plutniak <sebastien.plutniak@posteo.net>
Diff between archeofrag versions 0.8.2 dated 2022-09-11 and 1.0.0 dated 2024-12-17
DESCRIPTION | 14 MD5 | 101 +-- NAMESPACE | 3 NEWS.md | 25 R/frag.edges.weighting.R | 204 +++--- R/frag.get.layers.pair.R | 10 R/frag.get.parameters.R | 31 R/frag.graph.plot.R | 9 R/frag.graph.reduce.R |only R/frag.layers.admixture.R | 25 R/frag.layers.cohesion.R | 37 - R/frag.relations.by.layers.R | 37 - R/frag.simul.compare.R | 29 R/frag.simul.process.R | 13 R/frag.simul.summarise.R | 11 R/make_frag_object.R | 42 - R/utils.R | 4 TODO |only build/vignette.rds |binary data/BoutDesVergnes.RData |only data/Chauzeys.RData |only data/FontJuvenal.RData |only data/GrandeRivoire.RData |only data/LiangAbu.RData |binary data/Tai.RData |only inst/CITATION | 4 inst/doc/archeofrag-vignette.R | 28 inst/doc/archeofrag-vignette.Rmd | 4 inst/doc/archeofrag-vignette.html | 901 +++++++++++++++++----------- man/BoutDesVergnes.Rd |only man/Chauzeys.Rd |only man/FontJuvenal.Rd |only man/GrandeRivoire.Rd |only man/LiangAbu.Rd | 31 man/Tai.Rd |only man/archeofrag-package.Rd | 9 man/frag.edges.weighting.Rd | 13 man/frag.get.layers.Rd | 10 man/frag.get.layers.pair.Rd | 13 man/frag.get.parameters.Rd | 29 man/frag.graph.plot.Rd | 4 man/frag.graph.reduce.Rd |only man/frag.layers.admixture.Rd | 27 man/frag.layers.cohesion.Rd | 25 man/frag.observer.failure.Rd | 2 man/frag.relations.by.layers.Rd | 2 man/frag.simul.compare.Rd | 5 man/frag.simul.process.Rd | 32 man/frag.simul.summarise.Rd | 8 tests/testthat/test-frag.diameters.R | 4 tests/testthat/test-frag.edges.weighting.R | 59 + tests/testthat/test-frag.layers.admixture.R | 38 + tests/testthat/test-frag.layers.cohesion.R | 38 + tests/testthat/test-frag.simul.compare.R | 17 tests/testthat/test-frag.simul.process.R | 11 tests/testthat/test-frag.simul.summarise.R | 8 tests/testthat/test.frag.get.parameters.R | 21 vignettes/archeofrag-vignette.Rmd | 4 58 files changed, 1225 insertions(+), 717 deletions(-)
More information about exhaustiveRasch at CRAN
Permanent link
Title: Working with netCDF for Essential Biodiversity Variables
Description: The concept of Essential Biodiversity Variables (EBV, <https://geobon.org/ebvs/what-are-ebvs/>)
comes with a data structure based on the Network Common Data Form (netCDF).
The 'ebvcube' 'R' package provides functionality to easily create, access and
visualise this data. The EBV netCDFs can be downloaded from the EBV Data
Portal: Christian Langer/ iDiv (2020) <https://portal.geobon.org/>.
Author: Luise Quoss [aut, cre] ,
Nestor Fernandez [aut] ,
Christian Langer [aut] ,
Jose Valdez [aut] ,
Henrique Miguel Pereira [aut]
Maintainer: Luise Quoss <luise.quoss@idiv.de>
Diff between ebvcube versions 0.3.1 dated 2024-12-05 and 0.3.3 dated 2024-12-17
ebvcube-0.3.1/ebvcube/inst/docs/ebvcube_0.2.2.pdf |only ebvcube-0.3.1/ebvcube/inst/docs/ebvcube_0.3.1.pdf |only ebvcube-0.3.3/ebvcube/DESCRIPTION | 8 ebvcube-0.3.3/ebvcube/MD5 | 15 ebvcube-0.3.3/ebvcube/NEWS.md | 10 ebvcube-0.3.3/ebvcube/R/ebvcube-package.R | 30 - ebvcube-0.3.3/ebvcube/README.md | 18 ebvcube-0.3.3/ebvcube/inst/docs/ebvcube_0.3.3.pdf |only ebvcube-0.3.3/ebvcube/man/ebvcube.Rd | 2 ebvcube-0.3.3/ebvcube/tests/testthat/test-ebv_utils.R | 482 +++++++++--------- 10 files changed, 287 insertions(+), 278 deletions(-)
Title: Geocoding with the 'ArcGIS' REST API Service
Description: Lite interface for finding locations of addresses or
businesses around the world using the 'ArcGIS' REST API service
<https://developers.arcgis.com/rest/geocode/api-reference/overview-world-geocoding-service.htm>.
Address text can be converted to location candidates and a location
can be converted into an address. No API key required.
Author: Diego Hernangomez [aut, cre, cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between arcgeocoder versions 0.2.0 dated 2024-03-21 and 0.2.1 dated 2024-12-17
DESCRIPTION | 11 - MD5 | 42 +-- NEWS.md | 4 R/arc_geo.R | 398 ++++++++++++++++++------------------- R/arc_geo_categories.R | 6 R/arcgeocoder_check_access.R | 19 - R/utils.R | 313 ++++++++++++++--------------- README.md | 59 +++-- build/vignette.rds |binary data/arc_categories.rda |binary data/arc_spatial_references.rda |binary inst/CITATION | 16 - inst/doc/arcgeocoder.Rmd | 26 +- inst/doc/arcgeocoder.html | 60 ++--- inst/doc/featuretypes.Rmd | 78 ++----- inst/doc/featuretypes.html | 183 ++++++----------- inst/schemaorg.json | 6 man/figures/README-eiffel-1.png |binary man/figures/README-eiffel_sf-1.png |binary vignettes/arcgeocoder.Rmd | 26 +- vignettes/eiffel-1.png |binary vignettes/featuretypes.Rmd | 78 ++----- 22 files changed, 626 insertions(+), 699 deletions(-)
Title: Memory-Efficient, Visualize-Enhanced, Parallel-Accelerated GWAS
Tool
Description: A memory-efficient, visualize-enhanced, parallel-accelerated Genome-Wide Association Study (GWAS) tool. It can
(1) effectively process large data,
(2) rapidly evaluate population structure,
(3) efficiently estimate variance components several algorithms,
(4) implement parallel-accelerated association tests of markers three methods,
(5) globally efficient design on GWAS process computing,
(6) enhance visualization of related information.
'rMVP' contains three models GLM (Alkes Price (2006) <DOI:10.1038/ng1847>), MLM (Jianming Yu (2006) <DOI:10.1038/ng1702>)
and FarmCPU (Xiaolei Liu (2016) <doi:10.1371/journal.pgen.1005767>); variance components estimation methods EMMAX
(Hyunmin Kang (2008) <DOI:10.1534/genetics.107.080101>;), FaSTLMM (method: Christoph Lippert (2011) <DOI:10.1038/nmeth.1681>,
R implementation from 'GAPIT2': You Tang and Xiaolei Liu (2016) <DOI:10.1371/journal.pone.0107684> and
'SUPER': Qishan Wang and Feng Tian (2014) <DOI:10.1371/ [...truncated...]
Author: Lilin Yin [aut],
Haohao Zhang [aut],
Zhenshuang Tang [aut],
Jingya Xu [aut],
Dong Yin [aut],
Zhiwu Zhang [aut],
Xiaohui Yuan [aut],
Mengjin Zhu [aut],
Shuhong Zhao [aut],
Xinyun Li [aut],
Qishan Wang [ctb],
Feng Tian [ctb],
Hyunmin Kang [ctb],
Xiang [...truncated...]
Maintainer: Xiaolei Liu <xll198708@gmail.com>
Diff between rMVP versions 1.1.1 dated 2024-08-31 and 1.3.0 dated 2024-12-17
DESCRIPTION | 13 MD5 | 68 ++-- NAMESPACE | 3 R/MVP.Data.r | 60 ++-- R/MVP.FarmCPU.r | 115 +++++-- R/MVP.GLM.r | 28 + R/MVP.K.VanRaden.r | 72 +--- R/MVP.MLM.r | 27 + R/MVP.PCA.r | 14 R/MVP.Report.r | 4 R/MVP.Utility.r | 13 R/MVP.r | 166 ++++++++--- R/RcppExports.R | 28 + R/exports.R | 6 inst/extdata/05_mvp/mvp.geno.bin |binary inst/extdata/05_mvp/mvp.geno.desc | 6 inst/extdata/06_mvp-impute/mvp.imp.geno.bin |binary inst/extdata/06_mvp-impute/mvp.imp.geno.desc | 6 man/MVP.Data.Kin.Rd | 3 man/MVP.Data.PC.Rd | 3 man/MVP.Data.Rd | 10 man/MVP.Data.impute.Rd | 3 man/MVP.FarmCPU.Rd | 14 man/MVP.GLM.Rd | 21 + man/MVP.K.VanRaden.Rd | 14 man/MVP.MLM.Rd | 17 - man/MVP.PCA.Rd | 14 man/MVP.Rd | 12 man/MVP.Version.Rd | 2 src/RcppExports.cpp | 75 +++-- src/assoc.cpp | 399 +++++++++++++++++++-------- src/data_converter.cpp | 71 ++-- src/impute.cpp | 206 ++++++++++--- src/kinship.cpp | 270 +++++++++++++++--- src/mvp_omp.h | 2 35 files changed, 1234 insertions(+), 531 deletions(-)
Title: Intergovernmental Organizations Database
Description: Tools to extract information from the Intergovernmental
Organizations ('IGO') Database , version 3, provided by the Correlates
of War Project <https://correlatesofwar.org/>. See also Pevehouse, J.
C. et al. (2020). Version 3 includes information from 1815 to 2014.
Author: Diego Hernangomez [aut, cre, cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between igoR versions 0.2.0 dated 2024-02-05 and 0.2.1 dated 2024-12-17
DESCRIPTION | 16 - MD5 | 62 ++-- NEWS.md | 22 - R/data.R | 4 R/igo_dyadic.R | 574 ++++++++++++++++++++++---------------------- R/igo_members.R | 2 R/igo_search.R | 2 R/igo_search_states.R | 2 R/igo_state_membership.R | 2 R/sysdata.rda |binary README.md | 81 +++--- build/partial.rdb |binary build/vignette.rds |binary data/igo_year_format3.rda |binary data/state_year_format3.rda |binary data/states2016.rda |binary inst/CITATION | 72 ++--- inst/WORDLIST | 1 inst/doc/igoR.Rmd | 2 inst/doc/igoR.html | 23 - inst/doc/mapping.Rmd | 36 +- inst/doc/mapping.html | 67 ++--- inst/schemaorg.json | 6 man/igo_dyadic.Rd | 2 man/igo_members.Rd | 2 man/igo_search.Rd | 2 man/igo_state_membership.Rd | 2 vignettes/AustShared-1.png |binary vignettes/NAShared-1.png |binary vignettes/UNMaps-1.png |binary vignettes/igoR.Rmd | 2 vignettes/mapping.Rmd | 36 +- 32 files changed, 516 insertions(+), 504 deletions(-)
Title: Progress Bar for Parallel Tasks
Description: A simple interface in the form of R6 classes for executing tasks in
parallel, tracking their progress, and displaying accurate progress bars.
Author: Mihai Constantin [aut, cre]
Maintainer: Mihai Constantin <mihai@mihaiconstantin.com>
Diff between parabar versions 1.3.0 dated 2024-12-10 and 1.4.2 dated 2024-12-17
DESCRIPTION | 6 +++--- MD5 | 11 +++++++---- NEWS.md | 20 ++++++++++++++++++++ README.md | 2 +- build/vignette.rds |binary inst/doc/foreach.Rmd |only inst/doc/foreach.html |only vignettes/foreach.Rmd |only 8 files changed, 31 insertions(+), 8 deletions(-)
Title: Iterated Racing for Automatic Algorithm Configuration
Description: Iterated race is an extension of the Iterated F-race method for
the automatic configuration of optimization algorithms, that is,
(offline) tuning their parameters by finding the most appropriate
settings given a set of instances of an optimization problem.
M. López-Ibáñez, J. Dubois-Lacoste, L. Pérez Cáceres, T. Stützle,
and M. Birattari (2016) <doi:10.1016/j.orp.2016.09.002>.
Author: Manuel Lopez-Ibanez [aut, cre]
,
Jeremie Dubois-Lacoste [aut],
Leslie Perez Caceres [aut],
Thomas Stuetzle [aut],
Mauro Birattari [aut],
Eric Yuan [ctb],
Prasanna Balaprakash [ctb],
Nguyen Dang [ctb]
Maintainer: Manuel Lopez-Ibanez <manuel.lopez-ibanez@manchester.ac.uk>
Diff between irace versions 4.0 dated 2024-11-26 and 4.1 dated 2024-12-17
irace-4.0/irace/tests/testthat/test-bug-blocksize.R |only irace-4.1/irace/DESCRIPTION | 6 irace-4.1/irace/MD5 | 103 +- irace-4.1/irace/NEWS.md | 33 irace-4.1/irace/R/ablation.R | 61 - irace-4.1/irace/R/configurations.R | 2 irace-4.1/irace/R/generation.R | 2 irace-4.1/irace/R/irace.R | 33 irace-4.1/irace/R/model.R | 6 irace-4.1/irace/R/multi_irace.R | 12 irace-4.1/irace/R/parameters.R | 27 irace-4.1/irace/R/psRace.R | 114 +- irace-4.1/irace/R/race-wrapper.R | 16 irace-4.1/irace/R/race.R | 429 ++++----- irace-4.1/irace/R/race_state.R | 12 irace-4.1/irace/R/readParameters.R | 6 irace-4.1/irace/R/scenario.R | 4 irace-4.1/irace/R/testing.R | 5 irace-4.1/irace/R/utils.R | 24 irace-4.1/irace/R/version.R | 2 irace-4.1/irace/build/partial.rdb |binary irace-4.1/irace/inst/doc/irace-package.Rnw | 17 irace-4.1/irace/inst/doc/irace-package.pdf |binary irace-4.1/irace/inst/exdata/irace-acotsp.Rdata |binary irace-4.1/irace/inst/exdata/log-ablation.Rdata |binary irace-4.1/irace/inst/exdata/sann.rda |binary irace-4.1/irace/man/ablation.Rd | 14 irace-4.1/irace/man/ablation_cmdline.Rd | 8 irace-4.1/irace/man/checkParameters.Rd | 2 irace-4.1/irace/man/configurations_print_command.Rd | 2 irace-4.1/irace/man/multi_irace.Rd | 12 irace-4.1/irace/man/parameters.Rd | 14 irace-4.1/irace/man/printParameters.Rd | 2 irace-4.1/irace/man/readConfigurationsFile.Rd | 2 irace-4.1/irace/man/target_evaluator_default.Rd | 2 irace-4.1/irace/man/target_runner_default.Rd | 2 irace-4.1/irace/tests/testthat/helper-common.R | 34 irace-4.1/irace/tests/testthat/test-GenericWrapper4AC.R | 7 irace-4.1/irace/tests/testthat/test-ablation-cmdline.R | 4 irace-4.1/irace/tests/testthat/test-ablation.R |only irace-4.1/irace/tests/testthat/test-blocksize.R | 9 irace-4.1/irace/tests/testthat/test-bug-10.R | 38 irace-4.1/irace/tests/testthat/test-capping.R | 51 - irace-4.1/irace/tests/testthat/test-maxTime.R | 4 irace-4.1/irace/tests/testthat/test-multi_irace.R | 12 irace-4.1/irace/tests/testthat/test-raceconfs.R | 32 irace-4.1/irace/tests/testthat/test-readParameters.R | 17 irace-4.1/irace/tests/testthat/test-repair.R | 4 irace-4.1/irace/tests/testthat/test-sann-irace.R | 22 irace-4.1/irace/tests/testthat/test-targeteval.R | 8 irace-4.1/irace/vignettes/examples.Rdata |binary irace-4.1/irace/vignettes/irace-acotsp-stdout.txt | 695 ++++++---------- irace-4.1/irace/vignettes/irace-package.Rnw | 17 irace-4.1/irace/vignettes/section/irace-options.tex |only 54 files changed, 945 insertions(+), 983 deletions(-)
Title: Gower's Distance
Description: Compute Gower's distance (or similarity) coefficient between records. Compute
the top-n matches between records. Core algorithms are executed in parallel on systems
supporting OpenMP.
Author: Mark van der Loo [aut, cre],
David Turner [ctb]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between gower versions 1.0.1 dated 2022-12-22 and 1.0.2 dated 2024-12-17
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS | 4 ++++ R/gower-pkg.R | 2 +- R/gower.R | 2 +- build/vignette.rds |binary inst/doc/intro.pdf |binary inst/tinytest/test_gower.R | 5 +++++ man/gower-package.Rd | 18 ++++++++++++++++++ 9 files changed, 41 insertions(+), 14 deletions(-)
Title: Lightweight Modern & Responsive Card Component for 'shiny'
Description: Responsive and modern 'HTML' card essentials for 'shiny' applications and dashboards. This novel card component in 'Bootstrap' provides a flexible and extensible content container with multiple variants and options for building robust 'R' based apps e.g for graph build or machine learning projects. The features rely on a combination of 'JQuery' <https://jquery.com> and 'CSS' styles to improve the card functionality.
Author: Obinna Obianom [aut, cre]
Maintainer: Obinna Obianom <idonshayo@gmail.com>
Diff between card.pro versions 2.2.0 dated 2024-09-28 and 2.2.1 dated 2024-12-17
DESCRIPTION | 8 MD5 | 33 +- NEWS.md | 6 R/cards.R | 10 R/misc.R | 11 README.md | 36 +- inst/bundle/opt/bjquery-ui.min.js | 12 inst/bundle/req/app.config.js | 318 --------------------- inst/bundle/req/app.min.js | 2 inst/bundle/req/bootstrap.min.js | 15 inst/bundle/req/prod.min.css | 2 inst/bundle/req/rembox.js | 513 ---------------------------------- inst/bundle/req/tpunch.min.js | 2 inst/doc/introduction_to_cardpro.html | 4 inst/shiny-test/app1/app.R | 113 ++++--- inst/shiny-test/app1/rsconnect |only man/card.pro.Rd | 6 man/use.cardpro.Rd | 5 18 files changed, 166 insertions(+), 930 deletions(-)
Title: Black-Box Optimization Toolkit
Description: Features highly configurable search spaces via the 'paradox'
package and optimizes every user-defined objective function. The
package includes several optimization algorithms e.g. Random Search,
Iterated Racing, Bayesian Optimization (in 'mlr3mbo') and Hyperband
(in 'mlr3hyperband'). bbotk is the base package of 'mlr3tuning',
'mlr3fselect' and 'miesmuschel'.
Author: Marc Becker [cre, aut] ,
Jakob Richter [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
Martin Binder [aut],
Olaf Mersmann [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between bbotk versions 1.4.1 dated 2024-11-27 and 1.5.0 dated 2024-12-17
DESCRIPTION | 12 +++---- MD5 | 36 +++++++++++---------- NAMESPACE | 1 NEWS.md | 7 ++++ R/ArchiveAsync.R | 6 +-- R/ArchiveAsyncFrozen.R |only R/ArchiveBatch.R | 6 +-- R/Codomain.R | 19 +++++++---- R/OptimInstanceBatch.R | 8 ++-- R/OptimizerAsync.R | 3 - R/OptimizerBatchIrace.R | 4 +- R/mlr_callbacks.R | 24 ++++++++++++++ R/zzz.R | 1 man/ArchiveAsyncFrozen.Rd |only man/Codomain.Rd | 15 +++++--- man/bbotk.async_freeze_archive.Rd |only man/mlr_optimizers_irace.Rd | 4 +- tests/testthat/test_ArchiveAsyncFrozen.R |only tests/testthat/test_OptimInstanceBatchSingleCrit.R | 2 - tests/testthat/test_OptimizerIrace.R | 2 - tests/testthat/test_mlr_callbacks.R | 33 +++++++++++++++++++ 21 files changed, 133 insertions(+), 50 deletions(-)
Title: Creating Composite Plots using 'aplot'
Description: Many complex plots are actually composite plots, such as 'oncoplot', 'funkyheatmap', 'upsetplot', etc. We can produce subplots using 'ggplot2' and combine them to create composite plots using 'aplot'. In this way, it is easy to customize these complex plots, by adding, deleting or modifying subplots in the final plot. This package provides a set of utilities to help users to create subplots and complex plots.
Author: Guangchuang Yu [aut, cre] ,
Shuangbin Xu [ctb] ,
Chun-Hui Gao [ctb] ,
Shensuo Li [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between aplotExtra versions 0.0.2 dated 2023-08-25 and 0.0.3 dated 2024-12-17
DESCRIPTION | 16 +++++++++------- MD5 | 10 ++++++---- NAMESPACE | 2 ++ NEWS.md | 4 ++++ R/aplotExtra-package.R |only R/oncoplot.r | 30 ++++++++++-------------------- man/aplotExtra-package.Rd |only 7 files changed, 31 insertions(+), 31 deletions(-)
Title: Tidy Finance Helper Functions
Description: Helper functions for empirical research in financial
economics, addressing a variety of topics covered in Scheuch, Voigt,
and Weiss (2023) <doi:10.1201/b23237>. The package is designed to
provide shortcuts for issues extensively discussed in the book,
facilitating easier application of its concepts. For more information
and resources related to the book, visit
<https://www.tidy-finance.org/r/index.html>.
Author: Christoph Scheuch [aut, cre, cph]
,
Stefan Voigt [aut, cph] ,
Patrick Weiss [aut, cph] ,
Maximilian Muecke [ctb]
Maintainer: Christoph Scheuch <christoph@tidy-intelligence.com>
Diff between tidyfinance versions 0.4.2 dated 2024-12-02 and 0.4.3 dated 2024-12-17
DESCRIPTION | 6 MD5 | 47 ++-- NEWS.md | 14 + R/create_wrds_dummy_database.R | 26 +- R/download_data_constituents.R | 196 ++++++++++--------- R/download_data_factors.R | 32 +-- R/download_data_fred.R | 67 +++--- R/download_data_macro_predictors.R | 11 - R/download_data_osap.R | 33 +-- R/download_data_stock_prices.R | 15 - R/download_data_wrds_compustat.R | 14 - R/download_data_wrds_crsp.R | 14 - R/download_data_wrds_trace_enhanced.R | 14 - R/handle_download_error.R | 2 R/validate.R |only README.md | 2 inst/doc/dates-in-tidyfinance.html | 16 - man/create_wrds_dummy_database.Rd | 11 - tests/testthat/test-create_wrds_dummy_database.R | 18 + tests/testthat/test-download_data_constituents.R | 42 ++-- tests/testthat/test-download_data_factors.R | 22 +- tests/testthat/test-download_data_fred.R | 27 +- tests/testthat/test-download_data_macro_predictors.R | 17 + tests/testthat/test-download_data_osap.R | 14 + tests/testthat/test-estimate_betas.R | 2 25 files changed, 375 insertions(+), 287 deletions(-)
Title: Versatile R Server
Description: Rserve acts as a socket server (TCP/IP or local sockets)
which allows binary requests to be sent to R. Every
connection has a separate workspace and working
directory. Client-side implementations are available
for popular languages such as C/C++ and Java, allowing
any application to use facilities of R without the need of
linking to R code. Rserve supports remote connection,
user authentication and file transfer. A simple R client
is included in this package as well. In addition, it can
also act as a secure WebSockets and HTTP/HTTPS server.
Author: Simon Urbanek [aut, cre, cph]
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between Rserve versions 1.8-13 dated 2023-11-28 and 1.8-15 dated 2024-12-17
DESCRIPTION | 18 +++-- MD5 | 39 +++++------ NAMESPACE | 2 NEWS | 63 ++++++++++++++++++ R/conn.R | 9 ++ R/zzz.R | 4 - inst/java/REngine.jar |binary inst/java/Rserve.jar |binary man/Rserve.http.add.static.Rd |only man/run.Rserve.Rd | 19 +++++ src/Makevars.win | 6 + src/Rserv.c | 98 +++++++++++++++++++++++++++- src/Rsrv.h | 4 - src/client/cxx/Rconnection.cc | 5 + src/client/cxx/Rconnection.h | 17 +++-- src/client/cxx/Rsrv.h | 4 - src/client/java/Rserve/Rserve.jar |binary src/http.c | 129 ++++++++++++++++++++++++++++---------- src/http.h | 11 +++ src/proxy/forward.c | 15 ++-- src/standalone.c | 15 ++++ 21 files changed, 374 insertions(+), 84 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-01-09 1.1.1
2023-09-19 1.1.0