Title: Clinical Trial Style Data Readout Listings
Description: Listings are often part of the submission of clinical trial
data in regulatory settings. We provide a framework for the specific
formatting features often used when displaying large datasets in that
context.
Author: Gabriel Becker [aut] ,
Adrian Waddell [aut],
Joe Zhu [aut, cre] ,
Davide Garolini [aut],
Emily de la Rua [aut],
Abinaya Yogasekaram [ctb],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between rlistings versions 0.2.9 dated 2024-06-20 and 0.2.10 dated 2025-01-08
rlistings-0.2.10/rlistings/DESCRIPTION | 27 - rlistings-0.2.10/rlistings/MD5 | 56 +- rlistings-0.2.10/rlistings/NEWS.md | 4 rlistings-0.2.10/rlistings/R/rlistings.R | 29 + rlistings-0.2.10/rlistings/R/rlistings_methods.R | 28 - rlistings-0.2.10/rlistings/build/vignette.rds |binary rlistings-0.2.10/rlistings/inst/WORDLIST | 3 rlistings-0.2.10/rlistings/inst/doc/col_formatting.R | 10 rlistings-0.2.10/rlistings/inst/doc/col_formatting.Rmd | 14 rlistings-0.2.10/rlistings/inst/doc/col_formatting.html | 11 rlistings-0.2.10/rlistings/inst/doc/pagination.html | 8 rlistings-0.2.10/rlistings/inst/doc/ref_footnotes.R | 15 rlistings-0.2.10/rlistings/inst/doc/ref_footnotes.Rmd | 19 rlistings-0.2.10/rlistings/inst/doc/ref_footnotes.html | 249 +++++----- rlistings-0.2.10/rlistings/inst/doc/rlistings.html | 4 rlistings-0.2.10/rlistings/man/figures/logo.svg |only rlistings-0.2.10/rlistings/man/listing_methods.Rd | 2 rlistings-0.2.10/rlistings/man/rlistings-package.Rd | 8 rlistings-0.2.10/rlistings/man/split_into_pages_by_var.Rd | 7 rlistings-0.2.10/rlistings/tests/testthat/_snaps/export.md | 162 ++++-- rlistings-0.2.10/rlistings/tests/testthat/_snaps/paginate_listing.md | 36 - rlistings-0.2.10/rlistings/tests/testthat/setup.R | 2 rlistings-0.2.10/rlistings/tests/testthat/test-export.R | 24 rlistings-0.2.10/rlistings/tests/testthat/test-listings.R | 16 rlistings-0.2.10/rlistings/tests/testthat/test-matrix_form.R | 31 + rlistings-0.2.10/rlistings/tests/testthat/test-paginate_listing.R | 19 rlistings-0.2.10/rlistings/vignettes/col_formatting.Rmd | 14 rlistings-0.2.10/rlistings/vignettes/ref_footnotes.Rmd | 19 rlistings-0.2.9/rlistings/man/figures/logo.png |only rlistings-0.2.9/rlistings/man/figures/rlistings-logo.svg |only rlistings-0.2.9/rlistings/tests/testthat/test-paginate_listing.R_drop |only 31 files changed, 513 insertions(+), 304 deletions(-)
Title: Convert Addresses to Standard Inputs
Description: Efficient tools for parsing and standardizing Australian
addresses from textual data. It utilizes optimized algorithms to accurately identify and
extract components of addresses, such as street names, types, and postcodes, especially
for large batched data in contexts where sending addresses to internet services may be
slow or inappropriate. The core functionality is built on fast string processing techniques
to handle variations in address formats and abbreviations commonly found in Australian
address data. Designed for data scientists, urban planners, and logistics analysts, the
package facilitates the cleaning and normalization of address information, supporting
better data integration and analysis in urban studies, geography, and related fields.
Author: Hugh Parsonage [aut, cre]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between healthyAddress versions 0.4.3 dated 2024-07-30 and 0.4.5 dated 2025-01-08
DESCRIPTION | 6 ++--- MD5 | 6 ++--- NEWS.md | 60 +++++++++++++++++++++++++++----------------------- src/StandardAddress.c | 6 +---- 4 files changed, 41 insertions(+), 37 deletions(-)
More information about healthyAddress at CRAN
Permanent link
Title: EM Algorithm for Model-Based Clustering of Finite Mixture
Gaussian Distribution
Description: EM algorithms and several efficient
initialization methods for model-based clustering of finite
mixture Gaussian distribution with unstructured dispersion
in both of unsupervised and semi-supervised learning.
Author: Wei-Chen Chen [aut, cre],
Ranjan Maitra [aut],
Volodymyr Melnykov [ctb],
Dan Nettleton [ctb],
David Faden [ctb],
Rouben Rostamian [ctb],
R Core team [ctb]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between EMCluster versions 0.2-16 dated 2024-09-08 and 0.2-17 dated 2025-01-08
ChangeLog | 3 +++ DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/fcn_init_EM.r | 2 +- 4 files changed, 11 insertions(+), 8 deletions(-)
Title: Data Processing for Aquatic Ecology
Description: Facilitate the analysis of data related to aquatic ecology, specifically the establishment of carbon budget.
Currently, the package allows the below analysis.
(i) the calculation of greenhouse gas flux based on data obtained from trace gas analyzer using the method described in Lin et al. (2024).
(ii) the calculation of Dissolved Oxygen (DO) metabolism based on data obtained from dissolved oxygen data logger using the method described in Staehr et al. (2010).
Yong et al. (2024) <doi:10.5194/bg-21-5247-2024>.
Staehr et al. (2010) <doi:10.4319/lom.2010.8.0628>.
Author: Zhao-Jun Yong [cre, aut]
Maintainer: Zhao-Jun Yong <nuannuan0425@gmail.com>
Diff between aelab versions 0.4.0 dated 2024-07-08 and 1.0.1 dated 2025-01-08
aelab-0.4.0/aelab/man/tidy_licor.Rd |only aelab-0.4.0/aelab/tests/testthat/ref/raw_n2o.xlsx |only aelab-0.4.0/aelab/tests/testthat/ref/start_time.xlsx |only aelab-1.0.1/aelab/DESCRIPTION | 16 aelab-1.0.1/aelab/MD5 | 35 +- aelab-1.0.1/aelab/NAMESPACE | 9 aelab-1.0.1/aelab/R/ghg_flux.R | 198 ++++++++++-- aelab-1.0.1/aelab/R/hobo_do.R | 250 +++++++++++++-- aelab-1.0.1/aelab/README.md | 16 aelab-1.0.1/aelab/inst/doc/aelab.R | 53 ++- aelab-1.0.1/aelab/inst/doc/aelab.Rmd | 140 ++++++-- aelab-1.0.1/aelab/inst/doc/aelab.html | 305 ++++++++++++++----- aelab-1.0.1/aelab/inst/extdata/ex_2024-01-01.csv |only aelab-1.0.1/aelab/inst/extdata/ex_2024-01-02.csv |only aelab-1.0.1/aelab/man/calculate_ghg_flux.Rd |only aelab-1.0.1/aelab/man/combine_hobo.Rd |only aelab-1.0.1/aelab/man/combine_weather.Rd |only aelab-1.0.1/aelab/man/convert_ghg_unit.Rd |only aelab-1.0.1/aelab/man/tidy_ghg_analyzer.Rd |only aelab-1.0.1/aelab/tests/testthat/ref/ch4.xlsx |only aelab-1.0.1/aelab/tests/testthat/ref/ex_hobo.csv |only aelab-1.0.1/aelab/tests/testthat/ref/ex_weather.csv |only aelab-1.0.1/aelab/tests/testthat/ref/info.xlsx |only aelab-1.0.1/aelab/tests/testthat/test-ghg_flux.R | 37 +- aelab-1.0.1/aelab/tests/testthat/test-hobo_do.R |only aelab-1.0.1/aelab/vignettes/aelab.Rmd | 140 ++++++-- 26 files changed, 940 insertions(+), 259 deletions(-)
Title: Hypothesis Tests for Quantiles and Quantile-Based Measures
Description: Functions to conduct hypothesis tests and derive confidence intervals
for quantiles, linear combinations of quantiles,
ratios of dependent linear combinations and differences
and ratios of all of the above for comparisons between independent samples.
Additionally, quantile-based measures of inequality are also considered.
Author: Shenal Dedduwakumara [aut, cre],
Luke Prendergast [aut],
Robert Staudte [aut]
Maintainer: Shenal Dedduwakumara <shenal.dedduwakumara@adelaide.edu.au>
Diff between rquest versions 1.0.2 dated 2024-10-14 and 1.0.3 dated 2025-01-08
DESCRIPTION | 6 MD5 | 14 - NEWS.md | 2 R/q.test.R | 338 ++++++++++++++++++++++++--------------------- R/qcov.R | 43 ++--- R/qineq.R | 122 +++++++--------- README.md | 5 tests/testthat/test-qcov.R | 12 - 8 files changed, 278 insertions(+), 264 deletions(-)
Title: 'Rcpp' Integration for 'CGAL'
Description: Creates a header only package to link to the 'CGAL'
(Computational Geometry Algorithms Library)
header files in 'Rcpp'. There are a variety of potential uses for
the software such as Hilbert sorting, K-D Tree nearest neighbors,
and convex hull algorithms. For more information about how to use the header files,
see the 'CGAL' documentation at <https://www.cgal.org>. Currently
downloads version 6.0.1 of the 'CGAL' header files.
Author: Eric Dunipace [aut, cre] ,
Tyler Morgan-Wall [ctb],
The CGAL Project [cph]
Maintainer: Eric Dunipace <edunipace@mail.harvard.edu>
Diff between RcppCGAL versions 6.0 dated 2024-12-11 and 6.0.1 dated 2025-01-08
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- NEWS.md | 10 ++++++++++ inst/doc/Installation.html | 4 ++-- tools/config/downloader_functions.R | 29 +++++++++++++++++++++++++++-- 5 files changed, 49 insertions(+), 14 deletions(-)
Title: Data from all Seasons of Survivor (US) TV Series in Tidy Format
Description: Datasets detailing the results, castaways, and events of each
season of Survivor for the US, Australia, South Africa, New Zealand, and the
UK. This includes details on the cast, voting history, immunity and reward
challenges, jury votes, boot order, advantage details, and episode ratings.
Use this for analysis of trends and statistics of the game.
Author: Daniel Oehm [aut, cre],
Carly Levitz [ctb],
Dario Mavec [ctb]
Maintainer: Daniel Oehm <danieloehm@gmail.com>
Diff between survivoR versions 2.3.4 dated 2024-06-29 and 2.3.5 dated 2025-01-08
survivoR-2.3.4/survivoR/data/episode_summary.rda |only survivoR-2.3.4/survivoR/man/episode_summary.Rd |only survivoR-2.3.5/survivoR/DESCRIPTION | 15 survivoR-2.3.5/survivoR/MD5 | 130 ++-- survivoR-2.3.5/survivoR/NAMESPACE | 24 survivoR-2.3.5/survivoR/NEWS.md | 29 survivoR-2.3.5/survivoR/R/add.R |only survivoR-2.3.5/survivoR/R/datasets.R | 68 +- survivoR-2.3.5/survivoR/R/filters.R |only survivoR-2.3.5/survivoR/R/get.R |only survivoR-2.3.5/survivoR/R/helpers.R | 100 +++ survivoR-2.3.5/survivoR/README.md | 267 +++++--- survivoR-2.3.5/survivoR/data/advantage_details.rda |binary survivoR-2.3.5/survivoR/data/advantage_movement.rda |binary survivoR-2.3.5/survivoR/data/auction_details.rda |binary survivoR-2.3.5/survivoR/data/boot_mapping.rda |binary survivoR-2.3.5/survivoR/data/castaway_details.rda |binary survivoR-2.3.5/survivoR/data/castaway_scores.rda |only survivoR-2.3.5/survivoR/data/castaways.rda |binary survivoR-2.3.5/survivoR/data/challenge_description.rda |binary survivoR-2.3.5/survivoR/data/challenge_results.rda |binary survivoR-2.3.5/survivoR/data/challenge_summary.rda |binary survivoR-2.3.5/survivoR/data/confessionals.rda |binary survivoR-2.3.5/survivoR/data/episodes.rda |binary survivoR-2.3.5/survivoR/data/jury_votes.rda |binary survivoR-2.3.5/survivoR/data/season_palettes.rda |binary survivoR-2.3.5/survivoR/data/season_summary.rda |binary survivoR-2.3.5/survivoR/data/survivor_auction.rda |binary survivoR-2.3.5/survivoR/data/tribe_colours.rda |binary survivoR-2.3.5/survivoR/data/tribe_mapping.rda |binary survivoR-2.3.5/survivoR/data/viewers.rda |binary survivoR-2.3.5/survivoR/data/vote_history.rda |binary survivoR-2.3.5/survivoR/man/add_alive.Rd |only survivoR-2.3.5/survivoR/man/add_bipoc.Rd |only survivoR-2.3.5/survivoR/man/add_castaway.Rd |only survivoR-2.3.5/survivoR/man/add_demogs.Rd |only survivoR-2.3.5/survivoR/man/add_finalist.Rd |only survivoR-2.3.5/survivoR/man/add_full_name.Rd |only survivoR-2.3.5/survivoR/man/add_gender.Rd |only survivoR-2.3.5/survivoR/man/add_jury.Rd |only survivoR-2.3.5/survivoR/man/add_lgbt.Rd |only survivoR-2.3.5/survivoR/man/add_result.Rd |only survivoR-2.3.5/survivoR/man/add_tribe.Rd |only survivoR-2.3.5/survivoR/man/add_tribe_colour.Rd |only survivoR-2.3.5/survivoR/man/add_winner.Rd |only survivoR-2.3.5/survivoR/man/advantage_details.Rd | 20 survivoR-2.3.5/survivoR/man/advantage_movement.Rd | 32 survivoR-2.3.5/survivoR/man/auction_details.Rd | 50 - survivoR-2.3.5/survivoR/man/boot_mapping.Rd | 40 - survivoR-2.3.5/survivoR/man/castaway_details.Rd | 43 - survivoR-2.3.5/survivoR/man/castaway_scores.Rd |only survivoR-2.3.5/survivoR/man/castaways.Rd | 53 - survivoR-2.3.5/survivoR/man/challenge_description.Rd | 104 +-- survivoR-2.3.5/survivoR/man/challenge_results.Rd | 44 - survivoR-2.3.5/survivoR/man/challenge_summary.Rd | 34 - survivoR-2.3.5/survivoR/man/confessionals.Rd | 28 survivoR-2.3.5/survivoR/man/episodes.Rd | 28 survivoR-2.3.5/survivoR/man/filter_alive.Rd |only survivoR-2.3.5/survivoR/man/filter_final_n.Rd |only survivoR-2.3.5/survivoR/man/filter_finalist.Rd |only survivoR-2.3.5/survivoR/man/filter_jury.Rd |only survivoR-2.3.5/survivoR/man/filter_new_era.Rd |only survivoR-2.3.5/survivoR/man/filter_us.Rd |only survivoR-2.3.5/survivoR/man/filter_vs.Rd |only survivoR-2.3.5/survivoR/man/filter_winner.Rd |only survivoR-2.3.5/survivoR/man/get_cast.Rd |only survivoR-2.3.5/survivoR/man/get_castaway_image.Rd | 2 survivoR-2.3.5/survivoR/man/jury_votes.Rd | 18 survivoR-2.3.5/survivoR/man/load_episode_transcripts.Rd |only survivoR-2.3.5/survivoR/man/pipe.Rd | 2 survivoR-2.3.5/survivoR/man/screen_time.Rd | 48 - survivoR-2.3.5/survivoR/man/season_palettes.Rd | 10 survivoR-2.3.5/survivoR/man/season_summary.Rd | 52 - survivoR-2.3.5/survivoR/man/still_alive.Rd |only survivoR-2.3.5/survivoR/man/survivor_auction.Rd | 26 survivoR-2.3.5/survivoR/man/tribe_colours.Rd | 16 survivoR-2.3.5/survivoR/man/tribe_mapping.Rd | 20 survivoR-2.3.5/survivoR/man/viewers.Rd | 26 survivoR-2.3.5/survivoR/man/vote_history.Rd | 60 - survivoR-2.3.5/survivoR/tests/testthat.R | 24 survivoR-2.3.5/survivoR/tests/testthat/tests-functions.R |only survivoR-2.3.5/survivoR/tests/testthat/tests.R | 484 ++++++++++----- 82 files changed, 1217 insertions(+), 680 deletions(-)
Title: Semi-Supervised Algorithm for Document Scaling
Description: A word embeddings-based semi-supervised model for document scaling Watanabe (2020) <doi:10.1080/19312458.2020.1832976>.
LSS allows users to analyze large and complex corpora on arbitrary dimensions with seed words exploiting efficiency of word embeddings (SVD, Glove).
It can generate word vectors on a users-provided corpus or incorporate a pre-trained word vectors.
Author: Kohei Watanabe [aut, cre, cph]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>
Diff between LSX versions 1.4.0 dated 2024-03-05 and 1.4.2 dated 2025-01-08
DESCRIPTION | 20 +++--- MD5 | 46 ++++++++------- NAMESPACE | 3 + NEWS.md | 14 ++++ R/as.textmodel.R | 24 +++++++- R/bootstrap.R | 44 +++++++++++++-- R/textmodel.R | 26 +++++--- R/textplot.R | 11 +++ R/textstat.R | 7 +- R/utils.R | 107 +++++++++++++++++++++++-------------- build/partial.rdb |binary inst |only man/bootstrap_lss.Rd | 4 - man/diagnosys.Rd | 4 - man/optimize_lss.Rd |only man/smooth_lss.Rd | 30 ++++++---- man/textstat_context.Rd | 8 +- tests/data/save.R |only tests/data/word2vec_test.RDS |only tests/spelling.R |only tests/testthat/Rplots.pdf |binary tests/testthat/test-as.textmodel.R | 13 ++++ tests/testthat/test-bootstrap.R | 41 ++++++++++---- tests/testthat/test-textmodel.R | 58 +++++++------------- tests/testthat/test-textplot.R | 14 ++-- tests/testthat/test-utils.R | 103 +++++++++++++++++++++++++++++++---- 26 files changed, 403 insertions(+), 174 deletions(-)
Title: Logistic Ordinal Regression Differential Item Functioning using
IRT
Description: Performs analysis of Differential Item Functioning (DIF) for
dichotomous and polytomous items using an iterative hybrid of
ordinal logistic regression and item response theory (IRT) according to
Choi, Gibbons, and Crane (2011) <doi:10.18637/jss.v039.i08>.
Author: Seung W. Choi [aut, cre],
Laura E. Gibbons [aut],
Paul K. Crane [aut]
Maintainer: Seung W. Choi <schoi@austin.utexas.edu>
Diff between lordif versions 0.3-3 dated 2016-03-03 and 0.4.2 dated 2025-01-08
lordif-0.3-3/lordif/R/lordif-internal.R |only lordif-0.4.2/lordif/DESCRIPTION | 33 +- lordif-0.4.2/lordif/MD5 | 67 ++-- lordif-0.4.2/lordif/NAMESPACE | 44 +-- lordif-0.4.2/lordif/R/DFIT.R | 132 ++++----- lordif-0.4.2/lordif/R/calctheta.R | 2 lordif-0.4.2/lordif/R/lordif.R | 424 +++++++++++++++--------------- lordif-0.4.2/lordif/R/montecarlo.R | 203 +++++++------- lordif-0.4.2/lordif/R/permute.R | 187 +++++++------ lordif-0.4.2/lordif/R/plot.lordif.MC.R | 78 ++--- lordif-0.4.2/lordif/R/plot.lordif.R | 200 ++++++-------- lordif-0.4.2/lordif/R/rundif.R | 128 ++++----- lordif-0.4.2/lordif/R/tcc.R | 38 +- lordif-0.4.2/lordif/README.md |only lordif-0.4.2/lordif/inst |only lordif-0.4.2/lordif/man/Anxiety.Rd | 110 +++---- lordif-0.4.2/lordif/man/DFIT.Rd | 83 ++--- lordif-0.4.2/lordif/man/calcprob.Rd | 86 ++---- lordif-0.4.2/lordif/man/calctheta.Rd | 78 ++--- lordif-0.4.2/lordif/man/collapse.Rd | 74 ++--- lordif-0.4.2/lordif/man/equate.Rd | 101 +++---- lordif-0.4.2/lordif/man/extract.Rd | 58 +--- lordif-0.4.2/lordif/man/getcutoff.Rd | 68 ++-- lordif-0.4.2/lordif/man/lordif-package.Rd | 150 +++++----- lordif-0.4.2/lordif/man/lordif.Rd | 180 ++++++------ lordif-0.4.2/lordif/man/montecarlo.Rd | 135 ++++----- lordif-0.4.2/lordif/man/permute.Rd | 133 ++++----- lordif-0.4.2/lordif/man/plot.lordif.MC.Rd | 112 +++---- lordif-0.4.2/lordif/man/plot.lordif.Rd | 113 +++---- lordif-0.4.2/lordif/man/probgpcm.Rd | 78 ++--- lordif-0.4.2/lordif/man/probgrm.Rd | 78 ++--- lordif-0.4.2/lordif/man/recode.Rd | 76 ++--- lordif-0.4.2/lordif/man/rundif.Rd | 100 +++---- lordif-0.4.2/lordif/man/runolr.Rd | 142 ++++------ lordif-0.4.2/lordif/man/separate.Rd | 72 ++--- lordif-0.4.2/lordif/man/tcc.Rd | 81 ++--- 36 files changed, 1793 insertions(+), 1851 deletions(-)
Title: General Transit Feed Specification (GTFS) Editing and Analysing
Tools
Description: Utility functions to read, manipulate, analyse and write
transit feeds in the General Transit Feed Specification (GTFS) data
format.
Author: Daniel Herszenhut [aut, cre] ,
Rafael H. M. Pereira [aut] ,
Pedro R. Andrade [aut] ,
Joao Bazzo [aut] ,
Mark Padgham [ctb],
Marcus Saraiva [ctb] ,
Ipea - Institute for Applied Economic Research [cph, fnd]
Maintainer: Daniel Herszenhut <dhersz@gmail.com>
Diff between gtfstools versions 1.3.0 dated 2024-10-07 and 1.4.0 dated 2025-01-08
gtfstools-1.3.0/gtfstools/inst/include |only gtfstools-1.3.0/gtfstools/src/Makevars |only gtfstools-1.4.0/gtfstools/DESCRIPTION | 7 gtfstools-1.4.0/gtfstools/MD5 | 189 ++++------ gtfstools-1.4.0/gtfstools/NEWS.md | 12 gtfstools-1.4.0/gtfstools/R/convert_sf_to_shapes.R | 4 gtfstools-1.4.0/gtfstools/R/convert_shapes_to_sf.R | 4 gtfstools-1.4.0/gtfstools/R/convert_stops_to_sf.R | 4 gtfstools-1.4.0/gtfstools/R/convert_time_to_seconds.R | 4 gtfstools-1.4.0/gtfstools/R/cpp11.R | 18 gtfstools-1.4.0/gtfstools/R/download_validator.R | 7 gtfstools-1.4.0/gtfstools/R/filter_by_agency_id.R | 4 gtfstools-1.4.0/gtfstools/R/filter_by_route_id.R | 4 gtfstools-1.4.0/gtfstools/R/filter_by_route_type.R | 4 gtfstools-1.4.0/gtfstools/R/filter_by_service_id.R | 4 gtfstools-1.4.0/gtfstools/R/filter_by_sf.R | 4 gtfstools-1.4.0/gtfstools/R/filter_by_shape_id.R | 4 gtfstools-1.4.0/gtfstools/R/filter_by_spatial_extent.R | 4 gtfstools-1.4.0/gtfstools/R/filter_by_stop_id.R | 4 gtfstools-1.4.0/gtfstools/R/filter_by_time_of_day.R | 6 gtfstools-1.4.0/gtfstools/R/filter_by_trip_id.R | 4 gtfstools-1.4.0/gtfstools/R/filter_by_weekday.R | 4 gtfstools-1.4.0/gtfstools/R/frequencies_to_stop_times.R | 4 gtfstools-1.4.0/gtfstools/R/get_children_stops.R | 4 gtfstools-1.4.0/gtfstools/R/get_parent_station.R | 4 gtfstools-1.4.0/gtfstools/R/get_stop_times_patterns.R | 4 gtfstools-1.4.0/gtfstools/R/get_trip_duration.R | 4 gtfstools-1.4.0/gtfstools/R/get_trip_geometry.R | 4 gtfstools-1.4.0/gtfstools/R/get_trip_length.R | 4 gtfstools-1.4.0/gtfstools/R/get_trip_segment_duration.R | 4 gtfstools-1.4.0/gtfstools/R/get_trip_speed.R | 4 gtfstools-1.4.0/gtfstools/R/merge_gtfs.R | 4 gtfstools-1.4.0/gtfstools/R/read_gtfs.R | 4 gtfstools-1.4.0/gtfstools/R/remove_duplicates.R | 4 gtfstools-1.4.0/gtfstools/R/set_trip_speed.R | 4 gtfstools-1.4.0/gtfstools/R/validate_gtfs.R | 2 gtfstools-1.4.0/gtfstools/R/write_gtfs.R | 4 gtfstools-1.4.0/gtfstools/build/vignette.rds |binary gtfstools-1.4.0/gtfstools/inst/doc/filtering.R | 3 gtfstools-1.4.0/gtfstools/inst/doc/filtering.Rmd | 3 gtfstools-1.4.0/gtfstools/inst/doc/filtering.html | 17 gtfstools-1.4.0/gtfstools/inst/doc/gtfstools.R | 14 gtfstools-1.4.0/gtfstools/inst/doc/gtfstools.Rmd | 2 gtfstools-1.4.0/gtfstools/inst/doc/gtfstools.html | 8 gtfstools-1.4.0/gtfstools/inst/doc/validating.R | 64 +-- gtfstools-1.4.0/gtfstools/inst/doc/validating.Rmd | 4 gtfstools-1.4.0/gtfstools/inst/doc/validating.html | 6 gtfstools-1.4.0/gtfstools/man/convert_sf_to_shapes.Rd | 4 gtfstools-1.4.0/gtfstools/man/convert_shapes_to_sf.Rd | 4 gtfstools-1.4.0/gtfstools/man/convert_stops_to_sf.Rd | 4 gtfstools-1.4.0/gtfstools/man/convert_time_to_seconds.Rd | 4 gtfstools-1.4.0/gtfstools/man/download_validator.Rd | 4 gtfstools-1.4.0/gtfstools/man/filter_by_agency_id.Rd | 4 gtfstools-1.4.0/gtfstools/man/filter_by_route_id.Rd | 4 gtfstools-1.4.0/gtfstools/man/filter_by_route_type.Rd | 4 gtfstools-1.4.0/gtfstools/man/filter_by_service_id.Rd | 4 gtfstools-1.4.0/gtfstools/man/filter_by_sf.Rd | 4 gtfstools-1.4.0/gtfstools/man/filter_by_shape_id.Rd | 4 gtfstools-1.4.0/gtfstools/man/filter_by_spatial_extent.Rd | 4 gtfstools-1.4.0/gtfstools/man/filter_by_stop_id.Rd | 4 gtfstools-1.4.0/gtfstools/man/filter_by_time_of_day.Rd | 4 gtfstools-1.4.0/gtfstools/man/filter_by_trip_id.Rd | 4 gtfstools-1.4.0/gtfstools/man/filter_by_weekday.Rd | 4 gtfstools-1.4.0/gtfstools/man/frequencies_to_stop_times.Rd | 4 gtfstools-1.4.0/gtfstools/man/get_children_stops.Rd | 4 gtfstools-1.4.0/gtfstools/man/get_parent_station.Rd | 4 gtfstools-1.4.0/gtfstools/man/get_stop_times_patterns.Rd | 4 gtfstools-1.4.0/gtfstools/man/get_trip_duration.Rd | 4 gtfstools-1.4.0/gtfstools/man/get_trip_geometry.Rd | 4 gtfstools-1.4.0/gtfstools/man/get_trip_length.Rd | 4 gtfstools-1.4.0/gtfstools/man/get_trip_segment_duration.Rd | 4 gtfstools-1.4.0/gtfstools/man/get_trip_speed.Rd | 4 gtfstools-1.4.0/gtfstools/man/merge_gtfs.Rd | 4 gtfstools-1.4.0/gtfstools/man/read_gtfs.Rd | 4 gtfstools-1.4.0/gtfstools/man/remove_duplicates.Rd | 4 gtfstools-1.4.0/gtfstools/man/set_trip_speed.Rd | 4 gtfstools-1.4.0/gtfstools/man/validate_gtfs.Rd | 2 gtfstools-1.4.0/gtfstools/man/write_gtfs.Rd | 4 gtfstools-1.4.0/gtfstools/tests/testthat.R | 10 gtfstools-1.4.0/gtfstools/tests/testthat/test-download_validator.R | 9 gtfstools-1.4.0/gtfstools/tests/testthat/test-read_gtfs.R | 2 gtfstools-1.4.0/gtfstools/tests/testthat/test-validate_gtfs.R | 13 gtfstools-1.4.0/gtfstools/vignettes/filtering.Rmd | 3 gtfstools-1.4.0/gtfstools/vignettes/gtfstools.Rmd | 2 gtfstools-1.4.0/gtfstools/vignettes/validating.Rmd | 4 85 files changed, 446 insertions(+), 193 deletions(-)
Title: ASCII Formatting for Values and Tables
Description: We provide a framework for rendering complex tables to ASCII,
and a set of formatters for transforming values or sets of values into
ASCII-ready display strings.
Author: Gabriel Becker [aut] ,
Adrian Waddell [aut],
Davide Garolini [aut],
Emily de la Rua [aut],
Abinaya Yogasekaram [ctb],
Joe Zhu [aut, cre] ,
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between formatters versions 0.5.9 dated 2024-09-12 and 0.5.10 dated 2025-01-08
formatters-0.5.10/formatters/DESCRIPTION | 21 - formatters-0.5.10/formatters/MD5 | 20 - formatters-0.5.10/formatters/NEWS.md | 6 formatters-0.5.10/formatters/R/matrix_form.R | 46 ++-- formatters-0.5.10/formatters/README.md | 2 formatters-0.5.10/formatters/build/vignette.rds |binary formatters-0.5.10/formatters/inst/WORDLIST | 1 formatters-0.5.10/formatters/inst/doc/formatters.html | 138 ++++++------ formatters-0.5.10/formatters/man/figures/logo.svg |only formatters-0.5.10/formatters/man/formatters-package.Rd | 6 formatters-0.5.10/formatters/tests/testthat/test-txt_wrap.R | 62 +++++ formatters-0.5.9/formatters/man/figures/logo.png |only 12 files changed, 196 insertions(+), 106 deletions(-)
Title: Behavioral Economic Easy Discounting
Description: Facilitates some of the analyses performed in studies of
behavioral economic discounting. The package supports scoring of the 27-Item Monetary Choice
Questionnaire (see Kaplan et al., 2016; <doi:10.1007/s40614-016-0070-9>), calculating k
values (Mazur's simple hyperbolic and exponential) using nonlinear regression, calculating
various Area Under the Curve (AUC) measures, plotting regression curves for both fit-to-group and
two-stage approaches, checking for unsystematic discounting
(Johnson & Bickel, 2008; <doi:10.1037/1064-1297.16.3.264>) and scoring of the
minute discounting task (see Koffarnus & Bickel, 2014; <doi:10.1037/a0035973>) using the
Qualtrics 5-trial discounting template (see the Qualtrics Minute Discounting User Guide;
<doi:10.13140/RG.2.2.26495.79527>), which is also available as a .qsf file in this package.
Author: Brent A. Kaplan [aut, cre, cph]
Maintainer: Brent A. Kaplan <bkaplan.ku@gmail.com>
Diff between beezdiscounting versions 0.3.1 dated 2023-11-16 and 0.3.2 dated 2025-01-08
DESCRIPTION | 32 ++- MD5 | 39 +++- NAMESPACE | 18 ++ NEWS.md | 47 ++++- R/beezdiscounting-package.R | 46 ++++- R/dd_ip.R |only R/fitting.R |only R/mcq.R | 194 +++++++++++++++++++++ R/sysdata.rda |binary R/utils.R | 170 +++++++++++++++++++ README.md | 363 ++++++++++++++++++++++++++++++----------- build/partial.rdb |binary data/dd_ip.rda |only man/beezdiscounting-package.Rd | 2 man/calc_aucs.Rd |only man/calc_conf_int.Rd |only man/calc_r2.Rd |only man/check_unsystematic.Rd |only man/dd_ip.Rd |only man/figures |only man/fit_dd.Rd |only man/get_lookup_table.Rd |only man/plot.prop_ss_output.Rd |only man/plot.score_mcq27_output.Rd |only man/plot_dd.Rd |only man/prop_ss.Rd |only man/results_dd.Rd |only man/score_mcq27.Rd | 4 man/summarize_mcq.Rd |only 29 files changed, 785 insertions(+), 130 deletions(-)
More information about beezdiscounting at CRAN
Permanent link
Title: Retrieve, Harmonise and Map Open Data Regarding the Italian
School System
Description: Compiles and displays the available data sets regarding the Italian school system, with a focus on the infrastructural aspects.
Input datasets are downloaded from the web, with the aim of updating everything to real time.
The functions are divided in four main modules, namely
'Get', to scrape raw data from the web
'Util', various utilities needed to process raw data
'Group', to aggregate data at the municipality or province level
'Map', to visualize the output datasets.
Author: Leonardo Cefalo [aut, cre] ,
Alessio Pollice [ctb, ths] ,
Paolo Maranzano [ctb]
Maintainer: Leonardo Cefalo <leonardo.cefalo@uniba.it>
Diff between SchoolDataIT versions 0.2.2 dated 2024-11-14 and 0.2.3 dated 2025-01-08
DESCRIPTION | 6 - MD5 | 44 ++++---- NEWS.md | 6 + R/Get_AdmUnNames.R | 2 R/Get_BroadBand.R | 2 R/Get_DB_MIUR.R | 4 R/Get_InnerAreas.R | 4 R/Get_Invalsi_IS.R | 218 +++++++++++++++++++++++++++++++++++------- R/Get_Registry.R | 2 R/Get_School2mun.R | 9 + R/Get_Shapefile.R | 2 R/Get_nstud.R | 2 R/Get_nteachers_prov.R | 2 R/Group_DB_MIUR.R | 2 R/Map_Invalsi.R | 29 ++++- R/Map_School_Buildings.R | 4 R/Set_DB.R | 11 +- R/Util_Invalsi_filter.R | 39 +++++-- R/example_Invalsi23_prov.R | 2 README.md | 2 man/Get_DB_MIUR.Rd | 2 man/Get_Invalsi_IS.Rd | 36 +++++- man/example_Invalsi23_prov.Rd | 2 23 files changed, 332 insertions(+), 100 deletions(-)
Title: Generalized Convergence Diagnostics for Difficult MCMC
Algorithms
Description: Trace plots and convergence diagnostics for Markov Chain Monte Carlo (MCMC) algorithms on highly multivariate or unordered spaces. Methods outlined in a forthcoming paper.
Author: Luke Duttweiler [aut, cre, cph]
Maintainer: Luke Duttweiler <lduttweiler@hsph.harvard.edu>
Diff between genMCMCDiag versions 0.2.2 dated 2024-07-12 and 0.2.3 dated 2025-01-08
genMCMCDiag-0.2.2/genMCMCDiag/man/sgelmanRubin.Rd |only genMCMCDiag-0.2.3/genMCMCDiag/DESCRIPTION | 6 genMCMCDiag-0.2.3/genMCMCDiag/MD5 | 32 - genMCMCDiag-0.2.3/genMCMCDiag/NEWS.md | 6 genMCMCDiag-0.2.3/genMCMCDiag/R/diag-sess.R | 48 - genMCMCDiag-0.2.3/genMCMCDiag/R/diag-sgelmanRubin.R | 8 genMCMCDiag-0.2.3/genMCMCDiag/R/diag-straceplot.R | 88 +-- genMCMCDiag-0.2.3/genMCMCDiag/R/genDiagnostic.R | 85 +-- genMCMCDiag-0.2.3/genMCMCDiag/README.md | 242 +++++----- genMCMCDiag-0.2.3/genMCMCDiag/man/figures/README-example1-1.png |binary genMCMCDiag-0.2.3/genMCMCDiag/man/figures/README-unnamed-chunk-2-1.png |binary genMCMCDiag-0.2.3/genMCMCDiag/man/genDiagnostic.Rd | 148 +++--- genMCMCDiag-0.2.3/genMCMCDiag/man/genMCMCDiag-package.Rd | 46 - genMCMCDiag-0.2.3/genMCMCDiag/man/partitionDist.Rd | 58 +- genMCMCDiag-0.2.3/genMCMCDiag/man/print.mcmcDiag.Rd | 44 - genMCMCDiag-0.2.3/genMCMCDiag/man/sess.Rd | 38 - genMCMCDiag-0.2.3/genMCMCDiag/man/spsrf.Rd |only genMCMCDiag-0.2.3/genMCMCDiag/man/straceplot.Rd | 42 - 18 files changed, 452 insertions(+), 439 deletions(-)
Title: Advanced Toolset for Efficient Time Series Dissimilarity
Analysis
Description: Fast C++ implementation of Dynamic Time Warping for time series dissimilarity analysis, with applications in environmental monitoring and sensor data analysis, climate science, signal processing and pattern recognition, and financial data analysis. Built upon the ideas presented in Benito and Birks (2020) <doi:10.1111/ecog.04895>, provides tools for analyzing time series of varying lengths and structures, including irregular multivariate time series. Key features include individual variable contribution analysis, restricted permutation tests for statistical significance, and imputation of missing data via GAMs. Additionally, the package provides an ample set of tools to prepare and manage time series data.
Author: Blas M. Benito [aut, cre, cph]
Maintainer: Blas M. Benito <blasbenito@gmail.com>
Diff between distantia versions 1.0.2 dated 2019-10-28 and 2.0.0 dated 2025-01-08
distantia-1.0.2/distantia/R/autoSum.R |only distantia-1.0.2/distantia/R/distanceMatrix.R |only distantia-1.0.2/distantia/R/distancePairedSamples.R |only distantia-1.0.2/distantia/R/formatPsi.R |only distantia-1.0.2/distantia/R/handleNA.R |only distantia-1.0.2/distantia/R/leastCost.R |only distantia-1.0.2/distantia/R/leastCostMatrix.R |only distantia-1.0.2/distantia/R/leastCostPath.R |only distantia-1.0.2/distantia/R/leastCostPathNoBlocks.R |only distantia-1.0.2/distantia/R/plotMatrix.R |only distantia-1.0.2/distantia/R/prepareSequences.R |only distantia-1.0.2/distantia/R/psi.R |only distantia-1.0.2/distantia/R/workflowImportance.R |only distantia-1.0.2/distantia/R/workflowImportanceHP.R |only distantia-1.0.2/distantia/R/workflowNullPsi.R |only distantia-1.0.2/distantia/R/workflowNullPsiHP.R |only distantia-1.0.2/distantia/R/workflowPartialMatch.R |only distantia-1.0.2/distantia/R/workflowPsi.R |only distantia-1.0.2/distantia/R/workflowPsiHP.R |only distantia-1.0.2/distantia/R/workflowSlotting.R |only distantia-1.0.2/distantia/R/workflowTransfer.R |only distantia-1.0.2/distantia/data/climate.RData |only distantia-1.0.2/distantia/data/climateLong.RData |only distantia-1.0.2/distantia/data/climateShort.RData |only distantia-1.0.2/distantia/data/pollenGP.RData |only distantia-1.0.2/distantia/data/sequenceA.RData |only distantia-1.0.2/distantia/data/sequenceB.RData |only distantia-1.0.2/distantia/data/sequencesMIS.RData |only distantia-1.0.2/distantia/man/autoSum.Rd |only distantia-1.0.2/distantia/man/climate.Rd |only distantia-1.0.2/distantia/man/climateLong.Rd |only distantia-1.0.2/distantia/man/climateShort.Rd |only distantia-1.0.2/distantia/man/distanceMatrix.Rd |only distantia-1.0.2/distantia/man/distancePairedSamples.Rd |only distantia-1.0.2/distantia/man/figures |only distantia-1.0.2/distantia/man/formatPsi.Rd |only distantia-1.0.2/distantia/man/handleNA.Rd |only distantia-1.0.2/distantia/man/leastCost.Rd |only 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distantia-1.0.2/distantia/man/workflowTransfer.Rd |only distantia-2.0.0/distantia/DESCRIPTION | 41 distantia-2.0.0/distantia/LICENSE |only distantia-2.0.0/distantia/MD5 | 489 distantia-2.0.0/distantia/NAMESPACE | 216 distantia-2.0.0/distantia/NEWS.md | 40 distantia-2.0.0/distantia/R/RcppExports.R |only distantia-2.0.0/distantia/R/color_continuous.R |only distantia-2.0.0/distantia/R/color_discrete.R |only distantia-2.0.0/distantia/R/data.R |only distantia-2.0.0/distantia/R/distance.R | 113 distantia-2.0.0/distantia/R/distance_matrix.R |only distantia-2.0.0/distantia/R/distantia-package.R |only distantia-2.0.0/distantia/R/distantia.R | 415 distantia-2.0.0/distantia/R/distantia_aggregate.R |only distantia-2.0.0/distantia/R/distantia_boxplot.R |only distantia-2.0.0/distantia/R/distantia_cluster_hclust.R |only distantia-2.0.0/distantia/R/distantia_cluster_kmeans.R |only distantia-2.0.0/distantia/R/distantia_dtw.R |only distantia-2.0.0/distantia/R/distantia_dtw_plot.R |only 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distantia-2.0.0/distantia/R/psi_cost_path.R |only distantia-2.0.0/distantia/R/psi_cost_path_sum.R |only distantia-2.0.0/distantia/R/psi_distance_lock_step.R |only distantia-2.0.0/distantia/R/psi_distance_matrix.R |only distantia-2.0.0/distantia/R/psi_equation.R |only distantia-2.0.0/distantia/R/transformations.R |only distantia-2.0.0/distantia/R/tsl_aggregate.R |only distantia-2.0.0/distantia/R/tsl_burst.R |only distantia-2.0.0/distantia/R/tsl_colnames.R |only distantia-2.0.0/distantia/R/tsl_count_NA.R |only distantia-2.0.0/distantia/R/tsl_diagnose.R |only distantia-2.0.0/distantia/R/tsl_handle_NA.R |only distantia-2.0.0/distantia/R/tsl_initialize.R |only distantia-2.0.0/distantia/R/tsl_join.R |only distantia-2.0.0/distantia/R/tsl_names.R |only distantia-2.0.0/distantia/R/tsl_ncol.R |only distantia-2.0.0/distantia/R/tsl_nrow.R |only distantia-2.0.0/distantia/R/tsl_plot.R |only distantia-2.0.0/distantia/R/tsl_repair.R |only distantia-2.0.0/distantia/R/tsl_resample.R |only distantia-2.0.0/distantia/R/tsl_simulate.R |only distantia-2.0.0/distantia/R/tsl_smooth.R |only distantia-2.0.0/distantia/R/tsl_stats.R |only distantia-2.0.0/distantia/R/tsl_subset.R |only distantia-2.0.0/distantia/R/tsl_time.R |only distantia-2.0.0/distantia/R/tsl_to_df.R |only distantia-2.0.0/distantia/R/tsl_transform.R |only distantia-2.0.0/distantia/R/utils_as_time.R |only distantia-2.0.0/distantia/R/utils_block_size.R |only distantia-2.0.0/distantia/R/utils_boxplot_common.R |only distantia-2.0.0/distantia/R/utils_check_args.R |only distantia-2.0.0/distantia/R/utils_check_list_class.R |only distantia-2.0.0/distantia/R/utils_clean_names.R |only distantia-2.0.0/distantia/R/utils_cluster_hclust_optimizer.R |only distantia-2.0.0/distantia/R/utils_cluster_kmeans_optimizer.R |only distantia-2.0.0/distantia/R/utils_cluster_silhouette.R |only distantia-2.0.0/distantia/R/utils_coerce_time_class.R |only distantia-2.0.0/distantia/R/utils_color_breaks.R |only distantia-2.0.0/distantia/R/utils_digits.R |only distantia-2.0.0/distantia/R/utils_distantia_df_split.R |only distantia-2.0.0/distantia/R/utils_drop_geometry.R |only distantia-2.0.0/distantia/R/utils_global_scaling_params.R |only distantia-2.0.0/distantia/R/utils_is_time.R |only distantia-2.0.0/distantia/R/utils_line_color.R |only distantia-2.0.0/distantia/R/utils_line_guide.R |only distantia-2.0.0/distantia/R/utils_matrix_guide.R |only distantia-2.0.0/distantia/R/utils_matrix_plot.R |only distantia-2.0.0/distantia/R/utils_new_time.R |only distantia-2.0.0/distantia/R/utils_optimize_loess.R |only distantia-2.0.0/distantia/R/utils_optimize_spline.R |only distantia-2.0.0/distantia/R/utils_prepare_df.R |only distantia-2.0.0/distantia/R/utils_prepare_matrix.R |only distantia-2.0.0/distantia/R/utils_prepare_matrix_list.R |only distantia-2.0.0/distantia/R/utils_prepare_time.R |only distantia-2.0.0/distantia/R/utils_prepare_vector_list.R |only distantia-2.0.0/distantia/R/utils_prepare_zoo_list.R |only distantia-2.0.0/distantia/R/utils_rescale_vector.R |only distantia-2.0.0/distantia/R/utils_time_keywords.R |only distantia-2.0.0/distantia/R/utils_time_keywords_dictionary.R |only distantia-2.0.0/distantia/R/utils_time_keywords_translate.R |only distantia-2.0.0/distantia/R/utils_time_units.R |only distantia-2.0.0/distantia/R/utils_tsl_pairs.R |only distantia-2.0.0/distantia/R/zoo_aggregate.R |only distantia-2.0.0/distantia/R/zoo_names.R |only distantia-2.0.0/distantia/R/zoo_permute.R |only distantia-2.0.0/distantia/R/zoo_plot.R |only distantia-2.0.0/distantia/R/zoo_resample.R |only distantia-2.0.0/distantia/R/zoo_simulate.R |only distantia-2.0.0/distantia/R/zoo_smooth_exponential.R |only distantia-2.0.0/distantia/R/zoo_smooth_window.R |only distantia-2.0.0/distantia/R/zoo_time.R |only distantia-2.0.0/distantia/R/zoo_to_tsl.R |only distantia-2.0.0/distantia/R/zoo_vector_to_matrix.R |only distantia-2.0.0/distantia/R/zzz.R |only distantia-2.0.0/distantia/README.md |25165 ---------- distantia-2.0.0/distantia/build |only distantia-2.0.0/distantia/data/albatross.rda |only distantia-2.0.0/distantia/data/cities_coordinates.rda |only distantia-2.0.0/distantia/data/cities_temperature.rda |only distantia-2.0.0/distantia/data/covid_counties.rda |only distantia-2.0.0/distantia/data/covid_prevalence.rda |only distantia-2.0.0/distantia/data/distances.rda |only distantia-2.0.0/distantia/data/eemian_coordinates.rda |only distantia-2.0.0/distantia/data/eemian_pollen.rda |only distantia-2.0.0/distantia/data/fagus_coordinates.rda |only distantia-2.0.0/distantia/data/fagus_dynamics.rda |only distantia-2.0.0/distantia/data/honeycomb_climate.rda |only distantia-2.0.0/distantia/data/honeycomb_polygons.rda |only distantia-2.0.0/distantia/inst |only distantia-2.0.0/distantia/man/albatross.Rd |only distantia-2.0.0/distantia/man/auto_distance_cpp.Rd |only distantia-2.0.0/distantia/man/auto_sum_cpp.Rd |only distantia-2.0.0/distantia/man/auto_sum_full_cpp.Rd |only distantia-2.0.0/distantia/man/auto_sum_path_cpp.Rd |only distantia-2.0.0/distantia/man/cities_coordinates.Rd |only distantia-2.0.0/distantia/man/cities_temperature.Rd |only distantia-2.0.0/distantia/man/color_continuous.Rd |only distantia-2.0.0/distantia/man/color_discrete.Rd |only distantia-2.0.0/distantia/man/cost_matrix_diagonal_cpp.Rd |only distantia-2.0.0/distantia/man/cost_matrix_diagonal_weighted_cpp.Rd |only distantia-2.0.0/distantia/man/cost_matrix_orthogonal_cpp.Rd |only distantia-2.0.0/distantia/man/cost_path_cpp.Rd |only distantia-2.0.0/distantia/man/cost_path_diagonal_bandwidth_cpp.Rd |only distantia-2.0.0/distantia/man/cost_path_diagonal_cpp.Rd |only distantia-2.0.0/distantia/man/cost_path_orthogonal_bandwidth_cpp.Rd |only distantia-2.0.0/distantia/man/cost_path_orthogonal_cpp.Rd |only distantia-2.0.0/distantia/man/cost_path_slotting_cpp.Rd |only distantia-2.0.0/distantia/man/cost_path_sum_cpp.Rd |only distantia-2.0.0/distantia/man/cost_path_trim_cpp.Rd |only distantia-2.0.0/distantia/man/covid_counties.Rd |only distantia-2.0.0/distantia/man/covid_prevalence.Rd |only distantia-2.0.0/distantia/man/distance.Rd | 44 distantia-2.0.0/distantia/man/distance_bray_curtis_cpp.Rd |only distantia-2.0.0/distantia/man/distance_canberra_cpp.Rd |only distantia-2.0.0/distantia/man/distance_chebyshev_cpp.Rd |only distantia-2.0.0/distantia/man/distance_chi_cpp.Rd |only distantia-2.0.0/distantia/man/distance_cosine_cpp.Rd |only distantia-2.0.0/distantia/man/distance_euclidean_cpp.Rd |only distantia-2.0.0/distantia/man/distance_hamming_cpp.Rd |only distantia-2.0.0/distantia/man/distance_hellinger_cpp.Rd |only distantia-2.0.0/distantia/man/distance_jaccard_cpp.Rd |only distantia-2.0.0/distantia/man/distance_ls_cpp.Rd |only distantia-2.0.0/distantia/man/distance_manhattan_cpp.Rd |only distantia-2.0.0/distantia/man/distance_matrix.Rd |only distantia-2.0.0/distantia/man/distance_matrix_cpp.Rd |only distantia-2.0.0/distantia/man/distance_russelrao_cpp.Rd |only distantia-2.0.0/distantia/man/distance_sorensen_cpp.Rd |only distantia-2.0.0/distantia/man/distances.Rd |only distantia-2.0.0/distantia/man/distantia-package.Rd | 15 distantia-2.0.0/distantia/man/distantia.Rd |only distantia-2.0.0/distantia/man/distantia_aggregate.Rd |only distantia-2.0.0/distantia/man/distantia_boxplot.Rd |only distantia-2.0.0/distantia/man/distantia_cluster_hclust.Rd |only distantia-2.0.0/distantia/man/distantia_cluster_kmeans.Rd |only distantia-2.0.0/distantia/man/distantia_dtw.Rd |only distantia-2.0.0/distantia/man/distantia_dtw_plot.Rd |only distantia-2.0.0/distantia/man/distantia_ls.Rd |only distantia-2.0.0/distantia/man/distantia_matrix.Rd |only distantia-2.0.0/distantia/man/distantia_model_frame.Rd |only distantia-2.0.0/distantia/man/distantia_spatial.Rd |only distantia-2.0.0/distantia/man/distantia_stats.Rd |only distantia-2.0.0/distantia/man/distantia_time_delay.Rd |only distantia-2.0.0/distantia/man/eemian_coordinates.Rd |only distantia-2.0.0/distantia/man/eemian_pollen.Rd |only distantia-2.0.0/distantia/man/f_binary.Rd |only distantia-2.0.0/distantia/man/f_clr.Rd |only distantia-2.0.0/distantia/man/f_detrend_difference.Rd |only distantia-2.0.0/distantia/man/f_detrend_linear.Rd |only distantia-2.0.0/distantia/man/f_detrend_poly.Rd |only distantia-2.0.0/distantia/man/f_hellinger.Rd |only distantia-2.0.0/distantia/man/f_list.Rd |only distantia-2.0.0/distantia/man/f_log.Rd |only distantia-2.0.0/distantia/man/f_percent.Rd |only distantia-2.0.0/distantia/man/f_proportion.Rd |only distantia-2.0.0/distantia/man/f_proportion_sqrt.Rd |only distantia-2.0.0/distantia/man/f_rescale_global.Rd |only distantia-2.0.0/distantia/man/f_rescale_local.Rd |only distantia-2.0.0/distantia/man/f_scale_global.Rd |only distantia-2.0.0/distantia/man/f_scale_local.Rd |only distantia-2.0.0/distantia/man/f_trend_linear.Rd |only distantia-2.0.0/distantia/man/f_trend_poly.Rd |only distantia-2.0.0/distantia/man/fagus_coordinates.Rd |only distantia-2.0.0/distantia/man/fagus_dynamics.Rd |only distantia-2.0.0/distantia/man/honeycomb_climate.Rd |only distantia-2.0.0/distantia/man/honeycomb_polygons.Rd |only distantia-2.0.0/distantia/man/importance_dtw_cpp.Rd |only distantia-2.0.0/distantia/man/importance_dtw_legacy_cpp.Rd |only distantia-2.0.0/distantia/man/importance_ls_cpp.Rd |only distantia-2.0.0/distantia/man/momentum.Rd |only distantia-2.0.0/distantia/man/momentum_aggregate.Rd |only distantia-2.0.0/distantia/man/momentum_boxplot.Rd |only distantia-2.0.0/distantia/man/momentum_dtw.Rd |only distantia-2.0.0/distantia/man/momentum_ls.Rd |only distantia-2.0.0/distantia/man/momentum_model_frame.Rd |only distantia-2.0.0/distantia/man/momentum_spatial.Rd |only distantia-2.0.0/distantia/man/momentum_stats.Rd |only distantia-2.0.0/distantia/man/momentum_to_wide.Rd |only distantia-2.0.0/distantia/man/permute_free_by_row_cpp.Rd |only distantia-2.0.0/distantia/man/permute_free_cpp.Rd |only distantia-2.0.0/distantia/man/permute_restricted_by_row_cpp.Rd |only distantia-2.0.0/distantia/man/permute_restricted_cpp.Rd |only distantia-2.0.0/distantia/man/psi_auto_distance.Rd |only distantia-2.0.0/distantia/man/psi_auto_sum.Rd |only distantia-2.0.0/distantia/man/psi_cost_matrix.Rd |only distantia-2.0.0/distantia/man/psi_cost_path.Rd |only distantia-2.0.0/distantia/man/psi_cost_path_sum.Rd |only distantia-2.0.0/distantia/man/psi_distance_lock_step.Rd |only distantia-2.0.0/distantia/man/psi_distance_matrix.Rd |only distantia-2.0.0/distantia/man/psi_dtw_cpp.Rd |only distantia-2.0.0/distantia/man/psi_equation.Rd |only distantia-2.0.0/distantia/man/psi_equation_cpp.Rd |only distantia-2.0.0/distantia/man/psi_ls_cpp.Rd |only distantia-2.0.0/distantia/man/psi_null_dtw_cpp.Rd |only distantia-2.0.0/distantia/man/psi_null_ls_cpp.Rd |only distantia-2.0.0/distantia/man/subset_matrix_by_rows_cpp.Rd |only distantia-2.0.0/distantia/man/tsl_aggregate.Rd |only distantia-2.0.0/distantia/man/tsl_burst.Rd |only distantia-2.0.0/distantia/man/tsl_colnames_clean.Rd |only distantia-2.0.0/distantia/man/tsl_colnames_get.Rd |only distantia-2.0.0/distantia/man/tsl_colnames_prefix.Rd |only distantia-2.0.0/distantia/man/tsl_colnames_set.Rd |only distantia-2.0.0/distantia/man/tsl_colnames_suffix.Rd |only distantia-2.0.0/distantia/man/tsl_count_NA.Rd |only distantia-2.0.0/distantia/man/tsl_diagnose.Rd |only distantia-2.0.0/distantia/man/tsl_handle_NA.Rd |only distantia-2.0.0/distantia/man/tsl_initialize.Rd |only distantia-2.0.0/distantia/man/tsl_join.Rd |only distantia-2.0.0/distantia/man/tsl_names_clean.Rd |only distantia-2.0.0/distantia/man/tsl_names_get.Rd |only distantia-2.0.0/distantia/man/tsl_names_set.Rd |only distantia-2.0.0/distantia/man/tsl_names_test.Rd |only distantia-2.0.0/distantia/man/tsl_ncol.Rd |only distantia-2.0.0/distantia/man/tsl_nrow.Rd |only distantia-2.0.0/distantia/man/tsl_plot.Rd |only distantia-2.0.0/distantia/man/tsl_repair.Rd |only distantia-2.0.0/distantia/man/tsl_resample.Rd |only distantia-2.0.0/distantia/man/tsl_simulate.Rd |only distantia-2.0.0/distantia/man/tsl_smooth.Rd |only distantia-2.0.0/distantia/man/tsl_stats.Rd |only distantia-2.0.0/distantia/man/tsl_subset.Rd |only distantia-2.0.0/distantia/man/tsl_time.Rd |only distantia-2.0.0/distantia/man/tsl_to_df.Rd |only distantia-2.0.0/distantia/man/tsl_transform.Rd |only distantia-2.0.0/distantia/man/utils_as_time.Rd |only distantia-2.0.0/distantia/man/utils_block_size.Rd |only distantia-2.0.0/distantia/man/utils_boxplot_common.Rd |only distantia-2.0.0/distantia/man/utils_check_args_distantia.Rd |only distantia-2.0.0/distantia/man/utils_check_args_matrix.Rd |only distantia-2.0.0/distantia/man/utils_check_args_momentum.Rd |only distantia-2.0.0/distantia/man/utils_check_args_path.Rd |only distantia-2.0.0/distantia/man/utils_check_args_tsl.Rd |only distantia-2.0.0/distantia/man/utils_check_args_zoo.Rd |only distantia-2.0.0/distantia/man/utils_check_distance_args.Rd |only distantia-2.0.0/distantia/man/utils_check_list_class.Rd |only distantia-2.0.0/distantia/man/utils_clean_names.Rd |only distantia-2.0.0/distantia/man/utils_cluster_hclust_optimizer.Rd |only distantia-2.0.0/distantia/man/utils_cluster_kmeans_optimizer.Rd |only distantia-2.0.0/distantia/man/utils_cluster_silhouette.Rd |only distantia-2.0.0/distantia/man/utils_coerce_time_class.Rd |only distantia-2.0.0/distantia/man/utils_color_breaks.Rd |only distantia-2.0.0/distantia/man/utils_digits.Rd |only distantia-2.0.0/distantia/man/utils_distantia_df_split.Rd |only distantia-2.0.0/distantia/man/utils_drop_geometry.Rd |only distantia-2.0.0/distantia/man/utils_global_scaling_params.Rd |only distantia-2.0.0/distantia/man/utils_is_time.Rd |only distantia-2.0.0/distantia/man/utils_line_color.Rd |only distantia-2.0.0/distantia/man/utils_line_guide.Rd |only distantia-2.0.0/distantia/man/utils_matrix_guide.Rd |only distantia-2.0.0/distantia/man/utils_matrix_plot.Rd |only distantia-2.0.0/distantia/man/utils_new_time.Rd |only distantia-2.0.0/distantia/man/utils_optimize_loess.Rd |only distantia-2.0.0/distantia/man/utils_optimize_spline.Rd |only distantia-2.0.0/distantia/man/utils_prepare_df.Rd |only distantia-2.0.0/distantia/man/utils_prepare_matrix.Rd |only distantia-2.0.0/distantia/man/utils_prepare_matrix_list.Rd |only distantia-2.0.0/distantia/man/utils_prepare_time.Rd |only distantia-2.0.0/distantia/man/utils_prepare_vector_list.Rd |only distantia-2.0.0/distantia/man/utils_prepare_zoo_list.Rd |only distantia-2.0.0/distantia/man/utils_rescale_vector.Rd |only distantia-2.0.0/distantia/man/utils_time_keywords.Rd |only distantia-2.0.0/distantia/man/utils_time_keywords_dictionary.Rd |only distantia-2.0.0/distantia/man/utils_time_keywords_translate.Rd |only distantia-2.0.0/distantia/man/utils_time_units.Rd |only distantia-2.0.0/distantia/man/utils_tsl_pairs.Rd |only distantia-2.0.0/distantia/man/zoo_aggregate.Rd |only distantia-2.0.0/distantia/man/zoo_name_clean.Rd |only distantia-2.0.0/distantia/man/zoo_name_get.Rd |only distantia-2.0.0/distantia/man/zoo_name_set.Rd |only distantia-2.0.0/distantia/man/zoo_permute.Rd |only distantia-2.0.0/distantia/man/zoo_plot.Rd |only distantia-2.0.0/distantia/man/zoo_resample.Rd |only distantia-2.0.0/distantia/man/zoo_simulate.Rd |only distantia-2.0.0/distantia/man/zoo_smooth_exponential.Rd |only distantia-2.0.0/distantia/man/zoo_smooth_window.Rd |only distantia-2.0.0/distantia/man/zoo_time.Rd |only distantia-2.0.0/distantia/man/zoo_to_tsl.Rd |only distantia-2.0.0/distantia/man/zoo_vector_to_matrix.Rd |only distantia-2.0.0/distantia/src |only distantia-2.0.0/distantia/tests |only 374 files changed, 1324 insertions(+), 25214 deletions(-)
Title: Correlation Coefficient Related Functions
Description: Many correlation coefficient related functions are offered, such as correlations, partial correlations and hypothesis testing using asymptotic tests and computer intensive methods (bootstrap and permutation). References include Mardia K.V., Kent J.T. and Bibby J.M. (1979). "Multivariate Analysis". ISBN: 978-0124712522. London: Academic Press and Owen A. B. (2001). "Empirical likelihood". Chapman and Hall/CRC Press. ISBN: 9781584880714.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between corrfuns versions 1.0 dated 2023-10-27 and 1.2 dated 2025-01-08
DESCRIPTION | 13 +++++++------ MD5 | 30 ++++++++++++++++++------------ NAMESPACE | 5 +++-- R/correl.R | 2 +- R/correls.R | 2 +- R/correls2.test.R | 2 +- R/eel.cor.test.R |only R/el.cor.test.R |only R/perm.eelcortest.R |only R/perm.elcortest.R |only R/permcor.R | 26 +++++++++----------------- R/permcor2.R | 2 +- R/permcor3.R | 18 +++++++----------- man/bootcor.Rd | 2 +- man/correl.Rd | 2 +- man/corrfuns-package.Rd | 4 ++-- man/el.cor.test.Rd |only man/perm.elcortest.Rd |only man/permcor.Rd | 2 +- 19 files changed, 53 insertions(+), 57 deletions(-)
Title: Coordinated Networks Detection on Social Media
Description: Detects a variety of coordinated actions on social media and outputs the network of coordinated users along with related information.
Author: Nicola Righetti [aut, cre] ,
Paul Balluff [aut]
Maintainer: Nicola Righetti <nicola.righetti@uniurb.it>
Diff between CooRTweet versions 2.0.2 dated 2024-03-29 and 2.1.0 dated 2025-01-08
DESCRIPTION | 16 MD5 | 32 NAMESPACE | 9 NEWS.md | 6 R/data.R | 30 R/flag_speed_share.R | 4 R/simulate_data.R |only README.md | 8 build/vignette.rds |binary data/german_elections.rda |only inst/doc/vignette.R | 176 ++-- inst/doc/vignette.Rmd | 301 ++------ inst/doc/vignette.html | 1560 ++++++++++++++++---------------------------- man/flag_speed_share.Rd | 4 man/german_elections.Rd |only man/russian_coord_tweets.Rd | 6 man/simulate_data.Rd |only vignettes/references.bib | 15 vignettes/vignette.Rmd | 301 ++------ 19 files changed, 987 insertions(+), 1481 deletions(-)
Title: Colour Vision Models
Description: Colour vision models, colour spaces and colour thresholds. Provides flexibility to build user-defined colour vision models for n number of photoreceptor types. Includes Vorobyev & Osorio (1998) Receptor Noise Limited models <doi:10.1098/rspb.1998.0302>, Chittka (1992) colour hexagon <doi:10.1007/BF00199331>, and Endler & Mielke (2005) model <doi:10.1111/j.1095-8312.2005.00540.x>. Models have been extended to accept any number of photoreceptor types.
Author: Felipe Malheiros Gawryszewski [aut, cre]
Maintainer: Felipe Malheiros Gawryszewski <f.gawry@gmail.com>
Diff between colourvision versions 2.0.4 dated 2021-08-01 and 2.1.0 dated 2025-01-08
colourvision-2.0.4/colourvision/NEWS |only colourvision-2.1.0/colourvision/DESCRIPTION | 17 colourvision-2.1.0/colourvision/MD5 | 28 colourvision-2.1.0/colourvision/NEWS.md |only colourvision-2.1.0/colourvision/R/RNLachrom.R |only colourvision-2.1.0/colourvision/R/colourvision_package.R | 90 colourvision-2.1.0/colourvision/build/partial.rdb |binary colourvision-2.1.0/colourvision/build/vignette.rds |binary colourvision-2.1.0/colourvision/inst/doc/colourvision-vignette.R | 28 colourvision-2.1.0/colourvision/inst/doc/colourvision-vignette.Rmd | 89 colourvision-2.1.0/colourvision/inst/doc/colourvision-vignette.html | 1331 ++++++---- colourvision-2.1.0/colourvision/man/D65.Rd | 2 colourvision-2.1.0/colourvision/man/RNLachrom.Rd |only colourvision-2.1.0/colourvision/man/RNLmodel.Rd | 37 colourvision-2.1.0/colourvision/man/noise_e.Rd | 2 colourvision-2.1.0/colourvision/tests/testthat/test.models.R | 31 colourvision-2.1.0/colourvision/vignettes/colourvision-vignette.Rmd | 89 17 files changed, 1217 insertions(+), 527 deletions(-)
Title: Manual Tours, Manual Control of Dynamic Projections of Numeric
Multivariate Data
Description: Data visualization tours animates linear projection
of multivariate data as its basis (ie. orientation) changes. The 'spinifex'
packages generates paths for manual tours by manipulating the contribution of
a single variable at a time Cook & Buja (1997)
<doi:10.1080/10618600.1997.10474754>. Other types of tours, such as grand
(random walk) and guided (optimizing some objective function) are available
in the 'tourr' package Wickham et al. <doi:10.18637/jss.v040.i02>.
'spinifex' builds on 'tourr' and can render tours with 'gganimate' and
'plotly' graphics, and allows for exporting as an .html widget and as an .gif,
respectively. This work is fully discussed in Spyrison & Cook (2020)
<doi:10.32614/RJ-2020-027>.
Author: Nicholas Spyrison [aut, cre] ,
Dianne Cook [aut, ths]
Maintainer: Nicholas Spyrison <spyrison@gmail.com>
Diff between spinifex versions 0.3.7.0 dated 2024-01-29 and 0.3.8 dated 2025-01-08
spinifex-0.3.7.0/spinifex/inst/shiny_apps/radial_tour/rsconnect |only spinifex-0.3.8/spinifex/DESCRIPTION | 12 spinifex-0.3.8/spinifex/LICENSE | 2 spinifex-0.3.8/spinifex/MD5 | 148 - spinifex-0.3.8/spinifex/NAMESPACE | 127 - spinifex-0.3.8/spinifex/NEWS.md | 15 spinifex-0.3.8/spinifex/R/0_util.r | 30 spinifex-0.3.8/spinifex/R/1_manual_tour.r | 734 ++++---- spinifex-0.3.8/spinifex/R/2_ggproto_visualize.r | 199 ++ spinifex-0.3.8/spinifex/R/8_run_app.r | 90 - spinifex-0.3.8/spinifex/R/9_data.r | 2 spinifex-0.3.8/spinifex/R/9_spinifex-depricated.r | 20 spinifex-0.3.8/spinifex/R/spinifex-package.r | 14 spinifex-0.3.8/spinifex/R/zDepricated_2_render.r | 710 +++---- spinifex-0.3.8/spinifex/R/zDepricated_3_visualize.r | 888 +++++----- spinifex-0.3.8/spinifex/README.md | 154 - spinifex-0.3.8/spinifex/build/partial.rdb |binary spinifex-0.3.8/spinifex/build/vignette.rds |binary spinifex-0.3.8/spinifex/inst/doc/getting_started_with_spinifex.R | 79 spinifex-0.3.8/spinifex/inst/doc/getting_started_with_spinifex.Rmd | 3 spinifex-0.3.8/spinifex/inst/doc/getting_started_with_spinifex.html | 27 spinifex-0.3.8/spinifex/inst/doc/ggproto_api.R | 132 - spinifex-0.3.8/spinifex/inst/doc/ggproto_api.Rmd | 598 +++--- spinifex-0.3.8/spinifex/inst/doc/ggproto_api.html | 20 spinifex-0.3.8/spinifex/inst/shiny_apps/radial_tour/app.R | 4 spinifex-0.3.8/spinifex/inst/shiny_apps/radial_tour/ui.R | 164 - spinifex-0.3.8/spinifex/man/BreastCancer_na.rm.Rd | 152 - spinifex-0.3.8/spinifex/man/PimaIndiansDiabetes_long.Rd | 136 - spinifex-0.3.8/spinifex/man/PimaIndiansDiabetes_wide.Rd | 128 - spinifex-0.3.8/spinifex/man/animate_gganimate.Rd | 162 - spinifex-0.3.8/spinifex/man/append_fixed_y.Rd | 3 spinifex-0.3.8/spinifex/man/array2df.Rd | 110 - spinifex-0.3.8/spinifex/man/basis_guided.Rd | 92 - spinifex-0.3.8/spinifex/man/basis_onpp.Rd | 2 spinifex-0.3.8/spinifex/man/basis_pca.Rd | 64 spinifex-0.3.8/spinifex/man/create_manip_space.Rd | 90 - spinifex-0.3.8/spinifex/man/facet_wrap_tour.Rd | 3 spinifex-0.3.8/spinifex/man/ggtour.Rd | 11 spinifex-0.3.8/spinifex/man/is_orthonormal.Rd | 52 spinifex-0.3.8/spinifex/man/manual_tour.Rd | 196 +- spinifex-0.3.8/spinifex/man/penguins_na.rm.Rd | 134 - spinifex-0.3.8/spinifex/man/play_manual_tour.Rd | 192 +- spinifex-0.3.8/spinifex/man/play_tour_path.Rd | 146 - spinifex-0.3.8/spinifex/man/plot_pca.Rd |only spinifex-0.3.8/spinifex/man/plot_pca_scree.Rd |only spinifex-0.3.8/spinifex/man/proto_basis.Rd | 223 +- spinifex-0.3.8/spinifex/man/proto_default.Rd | 3 spinifex-0.3.8/spinifex/man/proto_density.Rd | 3 spinifex-0.3.8/spinifex/man/proto_density2d.Rd | 3 spinifex-0.3.8/spinifex/man/proto_frame_cor2.Rd | 2 spinifex-0.3.8/spinifex/man/proto_hex.Rd | 3 spinifex-0.3.8/spinifex/man/proto_highlight.Rd | 3 spinifex-0.3.8/spinifex/man/proto_hline0.Rd | 3 spinifex-0.3.8/spinifex/man/proto_origin.Rd | 3 spinifex-0.3.8/spinifex/man/proto_point.Rd | 3 spinifex-0.3.8/spinifex/man/proto_text.Rd | 13 spinifex-0.3.8/spinifex/man/proto_text_repel.Rd |only spinifex-0.3.8/spinifex/man/render_.Rd | 158 - spinifex-0.3.8/spinifex/man/render_gganimate.Rd | 170 - spinifex-0.3.8/spinifex/man/render_plotly.Rd | 120 - spinifex-0.3.8/spinifex/man/rotate_manip_space.Rd | 104 - spinifex-0.3.8/spinifex/man/run_app.Rd | 52 spinifex-0.3.8/spinifex/man/save_history.Rd | 2 spinifex-0.3.8/spinifex/man/scale_sd.Rd | 44 spinifex-0.3.8/spinifex/man/spinifex-deprecated.Rd | 92 - spinifex-0.3.8/spinifex/man/spinifex.Rd | 66 spinifex-0.3.8/spinifex/man/theme_spinifex.Rd | 50 spinifex-0.3.8/spinifex/man/view_frame.Rd | 170 - spinifex-0.3.8/spinifex/man/view_manip_space.Rd | 124 - spinifex-0.3.8/spinifex/man/weather.Rd | 168 - spinifex-0.3.8/spinifex/man/wine.Rd | 138 - spinifex-0.3.8/spinifex/tests/spelling.R | 6 spinifex-0.3.8/spinifex/tests/testthat.R | 8 spinifex-0.3.8/spinifex/tests/testthat/test-1_manual_tour.R | 104 - spinifex-0.3.8/spinifex/tests/testthat/test-2_ggproto_visualize.r | 19 spinifex-0.3.8/spinifex/vignettes/getting_started_with_spinifex.Rmd | 3 spinifex-0.3.8/spinifex/vignettes/ggproto_api.Rmd | 598 +++--- 77 files changed, 4269 insertions(+), 4034 deletions(-)
Title: Calculates Bond Values and Interest Rate Curves for Finance
Description: Values different types of assets and calibrates discount curves
for quantitative financial analysis. It covers fixed coupon assets,
floating note assets, interest and cross currency swaps with different
payment frequencies. Enables the calibration of spot, instantaneous forward
and basis curves, making it a powerful tool for accurate and flexible bond
valuation and curve generation. The valuation and calibration techniques
presented here are consistent with industry standards and incorporates
author's own calculations. Tuckman, B., Serrat, A. (2022, ISBN: 978-1-119-83555-4).
Author: Camilo Diaz [aut, cre, com],
Andres Galeano [aut],
Julian Rojas [aut],
Quantil S.A.S [aut, cph]
Maintainer: Camilo Diaz <kamodiaz@gmail.com>
Diff between QuantBondCurves versions 0.3.0 dated 2024-05-16 and 0.3.1 dated 2025-01-08
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/doc/quantcurves.html | 12 ++++++------ tests/testthat/test-generalFunctions.R | 2 +- 4 files changed, 13 insertions(+), 13 deletions(-)
More information about QuantBondCurves at CRAN
Permanent link
Title: Statistical Inference for Partially Observed Markov Processes
Description: Tools for data analysis with partially observed Markov process (POMP) models (also known as stochastic dynamical systems, hidden Markov models, and nonlinear, non-Gaussian, state-space models). The package provides facilities for implementing POMP models, simulating them, and fitting them to time series data by a variety of frequentist and Bayesian methods. It is also a versatile platform for implementation of inference methods for general POMP models.
Author: Aaron A. King [aut, cre] ,
Edward L. Ionides [aut] ,
Carles Breto [aut] ,
Stephen P. Ellner [ctb] ,
Matthew J. Ferrari [ctb] ,
Sebastian Funk [ctb] ,
Steven G. Johnson [ctb],
Bruce E. Kendall [ctb] ,
Michael Lavine [ctb],
Dao Nguyen [ctb] ,
Eamon B. [...truncated...]
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between pomp versions 5.11 dated 2024-09-12 and 6.1 dated 2025-01-08
DESCRIPTION | 8 +- MD5 | 160 +++++++++++++++++++++++++-------------------------- NAMESPACE | 4 + R/abc.R | 53 +++++++++++----- R/accumulators.R | 8 +- R/bake.R | 38 +++++++++++- R/bsmc2.R | 25 +++++-- R/eulermultinom.R | 58 ++++++++---------- R/flow.R | 23 +++++-- R/kalman.R | 66 +++++++++++++++------ R/kf.R | 3 R/mif2.R | 113 +++++++++++++++++++++++++----------- R/nlf.R | 60 +++++++++++++------ R/objfun.R | 12 ++- R/pfilter.R | 63 ++++++++++++++------ R/pmcmc.R | 74 ++++++++++++++++------- R/pomp.R | 63 +++++++++++--------- R/probe.R | 40 ++++++++---- R/probe_match.R | 59 ++++++++++++------ R/saved_states.R | 5 - R/simulate.R | 37 +++++++---- R/spect.R | 45 +++++++++----- R/spect_match.R | 70 +++++++++++++++------- R/traj_match.R | 43 +++++++++---- R/trajectory.R | 24 ++++--- R/userdata.R | 2 R/workhorses.R | 133 ++++++++++++++++++++++++++++-------------- R/wpfilter.R | 41 ++++++++----- README.md | 17 +++-- build/partial.rdb |binary data/LondonYorke.rda |binary data/bsflu.rda |binary data/ebolaWA2014.rda |binary data/ewcitmeas.rda |binary data/ewmeas.rda |binary inst/NEWS | 37 +++++++++++ inst/NEWS.Rd | 20 ++++++ inst/include/pomp.h | 28 ++++++++ man/abc.Rd | 13 ++-- man/accumvars.Rd | 6 + man/bake.Rd | 18 +++++ man/bsmc2.Rd | 9 +- man/continue.Rd | 10 +-- man/dinit.Rd | 8 +- man/dmeasure.Rd | 6 - man/dprior.Rd | 6 - man/dprocess.Rd | 6 - man/emeasure.Rd | 8 +- man/eulermultinom.Rd | 50 ++++++++++----- man/flow.Rd | 18 ++++- man/kalman.Rd | 15 ++-- man/kf.Rd | 43 ++++++------- man/mif2.Rd | 40 +++++++----- man/nlf.Rd | 11 +-- man/partrans.Rd | 6 - man/pfilter.Rd | 32 ++++++---- man/pmcmc.Rd | 13 ++-- man/pomp.Rd | 7 -- man/probe.Rd | 15 ++-- man/probe_match.Rd | 13 ++-- man/rinit.Rd | 6 - man/rmeasure.Rd | 8 +- man/rprior.Rd | 6 - man/rprocess.Rd | 8 +- man/saved_states.Rd | 5 - man/simulate.Rd | 17 ++--- man/skeleton.Rd | 8 +- man/spect.Rd | 15 ++-- man/spect_match.Rd | 13 ++-- man/spy.Rd | 10 ++- man/traj_match.Rd | 12 +-- man/trajectory.Rd | 8 +- man/userdata.Rd | 6 - man/vmeasure.Rd | 8 +- man/wpfilter.Rd | 11 +-- src/decls.h | 1 src/distributions.c | 16 +++++ src/init.c | 1 src/pomp.h | 28 ++++++++ src/skeleton.c | 2 src/ssa.c | 2 81 files changed, 1303 insertions(+), 673 deletions(-)
Title: Educational Assessment Tools for Replication Methods
Description: Replication methods to compute some basic statistic operations (means, standard deviations,
frequency tables, percentiles, mean comparisons using weighted effect coding, generalized linear models,
and linear multilevel models) in complex survey designs comprising multiple imputed or nested imputed
variables and/or a clustered sampling structure which both deserve special procedures at least in
estimating standard errors. See the package documentation for a more detailed description along with references.
Author: Sebastian Weirich [aut, cre],
Martin Hecht [aut],
Karoline Sachse [aut],
Benjamin Becker [aut],
Edna Grewers [ctb]
Maintainer: Sebastian Weirich <sebastian.weirich@iqb.hu-berlin.de>
Diff between eatRep versions 0.14.7 dated 2023-03-26 and 0.15.0 dated 2025-01-08
eatRep-0.14.7/eatRep/R/1_compareDiffs.r |only eatRep-0.14.7/eatRep/R/2_doTrends.r |only eatRep-0.14.7/eatRep/R/3_compareTrendDiffs.r |only eatRep-0.14.7/eatRep/tests/testthat/helper_SE_correction.RData |only eatRep-0.14.7/eatRep/tests/testthat/helper_SE_correction_table.RData |only eatRep-0.14.7/eatRep/tests/testthat/helper_SE_correction_wec_complex.RData |only eatRep-0.14.7/eatRep/tests/testthat/test_SE_correction.R |only eatRep-0.14.7/eatRep/tests/testthat/test_crossDiffs.R |only eatRep-0.14.7/eatRep/tests/testthat/test_report.R |only eatRep-0.15.0/eatRep/DESCRIPTION | 27 eatRep-0.15.0/eatRep/MD5 | 69 eatRep-0.15.0/eatRep/NAMESPACE | 9 eatRep-0.15.0/eatRep/NEWS.md | 13 eatRep-0.15.0/eatRep/R/bifie.r | 123 eatRep-0.15.0/eatRep/R/checkLEs.R | 4 eatRep-0.15.0/eatRep/R/globalVariables.r |only eatRep-0.15.0/eatRep/R/jk2.R | 1986 +++++---- eatRep-0.15.0/eatRep/R/pool.R | 46 eatRep-0.15.0/eatRep/R/report.r | 770 ++- eatRep-0.15.0/eatRep/README.md | 2 eatRep-0.15.0/eatRep/build/vignette.rds |binary eatRep-0.15.0/eatRep/inst/WORDLIST |only eatRep-0.15.0/eatRep/inst/doc/eatRep.html | 2014 ++++++---- eatRep-0.15.0/eatRep/inst/doc/eatRep.rmd | 405 +- eatRep-0.15.0/eatRep/man/checkLEs.Rd | 16 eatRep-0.15.0/eatRep/man/eatRep-package.rd | 9 eatRep-0.15.0/eatRep/man/figures |only eatRep-0.15.0/eatRep/man/generateRandomJk1Zones.Rd | 2 eatRep-0.15.0/eatRep/man/pool.R2.Rd |only eatRep-0.15.0/eatRep/man/repGlm.Rd | 24 eatRep-0.15.0/eatRep/man/repLmer.Rd | 6 eatRep-0.15.0/eatRep/man/repMean.Rd | 21 eatRep-0.15.0/eatRep/man/repQuantile.Rd | 50 eatRep-0.15.0/eatRep/man/repTable.Rd | 28 eatRep-0.15.0/eatRep/man/report.Rd | 40 eatRep-0.15.0/eatRep/tests/testthat/test_WEC.R | 5 eatRep-0.15.0/eatRep/tests/testthat/test_jk2_glm.R | 13 eatRep-0.15.0/eatRep/tests/testthat/test_jk2_lmer.r | 2 eatRep-0.15.0/eatRep/tests/testthat/test_jk2_quantile.r | 9 eatRep-0.15.0/eatRep/tests/testthat/test_trend_estimates.R | 10 eatRep-0.15.0/eatRep/vignettes/apa.csl |only eatRep-0.15.0/eatRep/vignettes/eatRep.rmd | 405 +- eatRep-0.15.0/eatRep/vignettes/endnote_bibtex_export.bib |only 43 files changed, 3602 insertions(+), 2506 deletions(-)
Title: Statistical Matching or Data Fusion
Description: Integration of two data sources referred to the same target population which share a number of variables. Some functions can also be used to impute missing values in data sets through hot deck imputation methods. Methods to perform statistical matching when dealing with data from complex sample surveys are available too.
Author: Marcello D'Orazio [aut, cre]
Maintainer: Marcello D'Orazio <mdo.statmatch@gmail.com>
Diff between StatMatch versions 1.4.2 dated 2024-05-13 and 1.4.3 dated 2025-01-08
DESCRIPTION | 17 ++- MD5 | 38 ++++--- NAMESPACE | 8 - NEWS | 227 ++++++++++++++++++++++++----------------------- R/Fbounds.pred.R |only R/comp.cont.R | 4 R/gower.dist.R | 29 +++--- R/mahalanobis.dist.R | 14 ++ R/plotCont.R | 8 - R/pw.assoc.R | 5 - R/rho.bounds.R |only R/rho.bounds.pred.R |only man/Fbounds.pred.Rd |only man/Fbwidths.by.x.Rd | 52 +++++----- man/StatMatch-package.Rd | 8 + man/comb.samples.Rd | 23 ++-- man/comp.cont.Rd | 53 +++++----- man/create.imputed.Rd | 5 - man/gower.dist.Rd | 3 man/mahalanobis.dist.Rd | 7 + man/plotCont.Rd | 8 - man/rho.bounds.Rd |only man/rho.bounds.pred.Rd |only 23 files changed, 275 insertions(+), 234 deletions(-)
Title: Execute and Control System Processes
Description: Tools to run system processes in the background. It can
check if a background process is running; wait on a background process
to finish; get the exit status of finished processes; kill background
processes. It can read the standard output and error of the processes,
using non-blocking connections. 'processx' can poll a process for
standard output or error, with a timeout. It can also poll several
processes at once.
Author: Gabor Csardi [aut, cre, cph] ,
Winston Chang [aut],
Posit Software, PBC [cph, fnd],
Ascent Digital Services [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between processx versions 3.8.4 dated 2024-03-16 and 3.8.5 dated 2025-01-08
DESCRIPTION | 6 +- MD5 | 20 ++++---- NEWS.md | 4 + R/utils.R | 3 - src/Makevars | 13 ++++- tests/testthat/_snaps/err-output.md | 89 ------------------------------------ tests/testthat/_snaps/newcli |only tests/testthat/_snaps/oldcli |only tests/testthat/test-err-output.R | 12 +++- tests/testthat/test-kill-tree.R | 4 + tests/testthat/test-poll-curl.R | 40 ++++++---------- tests/testthat/test-unix-sockets.R | 2 12 files changed, 58 insertions(+), 135 deletions(-)
Title: Historical Agricultural Data from the University of Illinois
Description: Agricultural data for 1888-2021 from the Morrow Plots at the
University of Illinois. The world's second oldest ongoing agricultural
experiment, the Morrow Plots measure the impact of crop rotation and
fertility treatments on corn yields. The data includes planting information
and annual yield measures for corn grown continuously and in rotation with
other crops, in treated and untreated soil.
Author: Sandi Caldrone [cre, aut, cph]
,
Heidi Imker [aut, cph] ,
Josh Henry [aut, cph] ,
Brooke Anderson [ctb]
Maintainer: Sandi Caldrone <caldron2@illinois.edu>
Diff between morrowplots versions 0.1.0 dated 2024-05-07 and 0.2.0 dated 2025-01-08
DESCRIPTION | 8 - MD5 | 26 +-- NEWS.md | 6 R/data.R | 74 ++++----- README.md | 40 ++--- build/vignette.rds |binary data/morrowplots.rda |binary inst/doc/introduction.Rmd | 200 ++++++++++++------------- inst/doc/introduction.html | 12 - inst/doc/morrow-plots-data-visualizations.html | 10 - inst/doc/national-yield-comparison.html | 10 - inst/doc/plots-etcetera.html | 8 - man/morrowplots.Rd | 4 vignettes/introduction.Rmd | 200 ++++++++++++------------- 14 files changed, 302 insertions(+), 296 deletions(-)
Title: Integrative Clustering of Multiple Genomic Dataset
Description: Carries out integrative clustering analysis using multiple types of genomic dataset using integrative Non-negative Matrix factorization.
Author: Prabhakar Chalise [aut, cre],
Rama Raghavan [aut],
Brooke Fridley [aut]
Maintainer: Prabhakar Chalise <pchalise@kumc.edu>
Diff between IntNMF versions 1.2.0 dated 2018-07-18 and 1.3.0 dated 2025-01-08
DESCRIPTION | 24 ++++++++++++++++++------ MD5 | 14 +++++++------- man/ClusterEntropy.Rd | 4 ---- man/ClusterPurity.Rd | 4 ---- man/ConsensusMatPlot.Rd | 4 ---- man/SilhouettePlot.Rd | 4 ---- man/nmf.mnnals.Rd | 4 ---- man/nmf.opt.k.Rd | 4 ---- 8 files changed, 25 insertions(+), 37 deletions(-)
Title: Create, Stow, and Read Data Packages
Description: Data frame, tibble, or tbl objects are converted to data package objects using specific metadata labels (name, version, title, homepage, description). A data package object ('dpkg') can be written to disk as a 'parquet' file or released to a 'GitHub' repository. Data package objects can be read into R from online repositories and downloaded files are cached locally across R sessions.
Author: Cole Brokamp [aut, cre, cph]
Maintainer: Cole Brokamp <cole@colebrokamp.com>
Diff between dpkg versions 0.6.0 dated 2024-11-04 and 0.6.1 dated 2025-01-08
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/dpkg_release_gh.R | 27 ++++++++++++++++++--------- man/dpkg_gh_release.Rd | 23 +++++++++++++++-------- 5 files changed, 44 insertions(+), 24 deletions(-)
Title: Simplified Statistical Procedures for Social Sciences
Description: Simplifies functions assess normality for bivariate and multivariate statistical techniques. Includes functions designed to replicate plots and tables that would result from similar calls in 'SPSS', including hst(), box(), qq(), tab(), cormat(), and residplot(). Also includes simplified formulae, such as mode(), scatter(), p.corr(), ow.anova(), and rm.anova().
Author: Burrel Vann Jr [aut, cre]
Maintainer: Burrel Vann Jr <bvannjr@sdsu.edu>
Diff between vannstats versions 1.3.4.14 dated 2023-04-15 and 1.5.1.8 dated 2025-01-08
DESCRIPTION | 12 +++-- MD5 | 22 ++++++--- NAMESPACE | 11 ++++ R/chi.sq.R | 112 +++++++++++++++++++++++++++++++++++------------- R/ow.anova.R | 36 +++++++++++---- R/scatter.R | 18 ++++++- R/se.R |only R/summary.chi.sq.R |only R/summary.ow.anova.R |only R/univ.desc.R |only R/z.test.R |only man/chi.sq.Rd | 6 +- man/se.Rd |only man/summary.chi.sq.Rd |only man/summary.ow.anova.Rd |only man/univ.desc.Rd |only man/z.test.Rd |only 17 files changed, 161 insertions(+), 56 deletions(-)
Title: Isolation-Based Outlier Detection
Description: Fast and multi-threaded implementation of
isolation forest (Liu, Ting, Zhou (2008) <doi:10.1109/ICDM.2008.17>),
extended isolation forest (Hariri, Kind, Brunner (2018) <doi:10.48550/arXiv.1811.02141>),
SCiForest (Liu, Ting, Zhou (2010) <doi:10.1007/978-3-642-15883-4_18>),
fair-cut forest (Cortes (2021) <doi:10.48550/arXiv.2110.13402>),
robust random-cut forest (Guha, Mishra, Roy, Schrijvers (2016) <http://proceedings.mlr.press/v48/guha16.html>),
and customizable variations of them, for isolation-based outlier detection, clustered outlier detection,
distance or similarity approximation (Cortes (2019) <doi:10.48550/arXiv.1910.12362>),
isolation kernel calculation (Ting, Zhu, Zhou (2018) <doi:10.1145/3219819.3219990>),
and imputation of missing values (Cortes (2019) <doi:10.48550/arXiv.1911.06646>),
based on random or guided decision tree splitting, and providing different metrics for
scoring anomalies based on isolation depth or density (Co [...truncated...]
Author: David Cortes [aut, cre, cph],
Thibaut Goetghebuer-Planchon [cph] ,
David Blackman [cph] ,
Sebastiano Vigna [cph] ,
NumPy Developers [cph] ,
SciPy Developers [cph] ,
Enthought Inc [cph] ,
Stephen Moshier [cph]
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between isotree versions 0.6.1-1 dated 2024-03-27 and 0.6.1-4 dated 2025-01-08
DESCRIPTION | 20 ++++++++++---------- MD5 | 18 +++++++++--------- R/helpers.R | 2 +- R/isoforest.R | 19 ++++++++++++++----- inst/doc/An_Introduction_to_Isolation_Forests.Rmd | 2 +- inst/doc/An_Introduction_to_Isolation_Forests.html | 2 +- man/isolation.forest.Rd | 3 +++ man/isotree.to.graphviz.Rd | 2 ++ man/predict.isolation_forest.Rd | 2 +- vignettes/An_Introduction_to_Isolation_Forests.Rmd | 2 +- 10 files changed, 43 insertions(+), 29 deletions(-)
Title: Robust Geostatistical Analysis of Spatial Data
Description: Provides functions for efficiently fitting linear models with spatially correlated errors by robust (Kuensch et al. (2011) <doi:10.3929/ethz-a-009900710>) and Gaussian (Harville (1977) <doi:10.1080/01621459.1977.10480998>) (Restricted) Maximum Likelihood and for computing robust and customary point and block external-drift Kriging predictions (Cressie (1993) <doi:10.1002/9781119115151>), along with utility functions for variogram modelling in ad hoc geostatistical analyses, model building, model evaluation by cross-validation, (conditional) simulation of Gaussian processes (Davies and Bryant (2013) <doi:10.18637/jss.v055.i09>), unbiased back-transformation of Kriging predictions of log-transformed data (Cressie (2006) <doi:10.1007/s11004-005-9022-8>).
Author: Andreas Papritz [aut, cre]
Maintainer: Andreas Papritz <papritz@retired.ethz.ch>
Diff between georob versions 0.3-20 dated 2024-09-05 and 0.3-21 dated 2025-01-08
ChangeLog | 10 DESCRIPTION | 8 MD5 | 30 R/georob_cv.R | 5 R/georob_lgnpp.R | 47 + build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 29 inst/doc/georob_vignette.R | 253 +----- inst/doc/georob_vignette.Rnw | 694 ++++++++++++++---- inst/doc/georob_vignette.pdf |binary vignettes/fig-ash-Kriging-polygons.pdf |only vignettes/fig-ash-bKriging-plot-robust-gaussian-1.pdf |only vignettes/fig-meuse-zinc-block-Kriging-blocks.pdf |only vignettes/fig-meuse-zinc-block-Kriging-plot.pdf |only vignettes/georob_vignette.Rnw | 694 ++++++++++++++---- vignettes/r_coalash_objects.RData |binary vignettes/r_meuse_zinc_objects.RData |binary 18 files changed, 1273 insertions(+), 497 deletions(-)
Title: Reading, Quality Control and Preprocessing of MBA (Multiplex
Bead Assay) Data
Description: Speeds up the process of loading raw data from MBA (Multiplex Bead Assay) examinations, performs quality control checks, and automatically normalises the data, preparing it for more advanced, downstream tasks. The main objective of the package is to create a simple environment for a user, who does not necessarily have experience with R language. The package is developed within the project of the same name - 'PvSTATEM', which is an international project aiming for malaria elimination.
Author: Tymoteusz Kwiecinski [aut, cre]
,
Jakub Grzywaczewski [aut],
Mateusz Nizwantowski [aut],
Przemyslaw Biecek [ths] ,
Nuno Sepulveda [ths]
Maintainer: Tymoteusz Kwiecinski <tymoteuszkwiecinski@gmail.com>
Diff between PvSTATEM versions 0.1.2 dated 2024-11-08 and 0.1.3 dated 2025-01-08
PvSTATEM-0.1.2/PvSTATEM/tests/testthat/Rplots.pdf |only PvSTATEM-0.1.3/PvSTATEM/DESCRIPTION | 8 PvSTATEM-0.1.3/PvSTATEM/MD5 | 24 PvSTATEM-0.1.3/PvSTATEM/NAMESPACE | 1 PvSTATEM-0.1.3/PvSTATEM/R/classes-plate_builder.R | 47 + PvSTATEM-0.1.3/PvSTATEM/R/generate_report.R | 301 +++++----- PvSTATEM-0.1.3/PvSTATEM/R/helpers.R | 5 PvSTATEM-0.1.3/PvSTATEM/README.md | 117 +-- PvSTATEM-0.1.3/PvSTATEM/inst/doc/example_script.html | 10 PvSTATEM-0.1.3/PvSTATEM/inst/extdata/CovidOISExPONTENT_CO_with_holes.csv |only PvSTATEM-0.1.3/PvSTATEM/inst/extdata/CovidOISExPONTENT_CO_with_holes_layout.xlsx |only PvSTATEM-0.1.3/PvSTATEM/man/get_location_matrix.Rd |only PvSTATEM-0.1.3/PvSTATEM/man/validate_filepath_and_output_dir.Rd | 2 PvSTATEM-0.1.3/PvSTATEM/tests/testthat/test-helpers.R | 15 PvSTATEM-0.1.3/PvSTATEM/tests/testthat/test-integration.R | 14 15 files changed, 294 insertions(+), 250 deletions(-)
Title: Correlation Coefficients for Multivariate Data
Description: Correlation coefficients for multivariate data, namely the squared correlation coefficient and the RV coefficient (multivariate generalization of the squared Pearson correlation coefficient). References include Mardia K.V., Kent J.T. and Bibby J.M. (1979). "Multivariate Analysis". ISBN: 978-0124712522. London: Academic Press.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between mvcor versions 1.0 dated 2024-09-15 and 1.1 dated 2025-01-08
mvcor-1.0/mvcor/R/bcdcor.R |only mvcor-1.1/mvcor/DESCRIPTION | 9 +++++---- mvcor-1.1/mvcor/MD5 | 23 +++++++++++------------ mvcor-1.1/mvcor/NAMESPACE | 2 +- mvcor-1.1/mvcor/R/dcor.R | 4 ++-- mvcor-1.1/mvcor/R/drv.R | 1 - mvcor-1.1/mvcor/R/mantel.R | 4 ++-- mvcor-1.1/mvcor/man/arv.Rd | 2 +- mvcor-1.1/mvcor/man/dcor.Rd | 28 ++++++++++++++-------------- mvcor-1.1/mvcor/man/drv.Rd | 2 +- mvcor-1.1/mvcor/man/mrv.Rd | 2 +- mvcor-1.1/mvcor/man/mvcor-package.Rd | 4 ++-- mvcor-1.1/mvcor/man/rv.Rd | 2 +- 13 files changed, 41 insertions(+), 42 deletions(-)
Title: Simultaneous Multi-Bias Adjustment
Description: Quantify the causal effect of a binary exposure on a binary
outcome with adjustment for multiple biases. The functions can
simultaneously adjust for any combination of uncontrolled confounding,
exposure/outcome misclassification, and selection bias.
The underlying method generalizes the concept of combining inverse
probability of selection weighting with predictive value weighting.
Simultaneous multi-bias analysis can be used to enhance the validity
and transparency of real-world evidence obtained from observational,
longitudinal studies. Based on the work from Paul Brendel, Aracelis Torres,
and Onyebuchi Arah (2023) <doi:10.1093/ije/dyad001>.
Author: Paul Brendel [aut, cre, cph]
Maintainer: Paul Brendel <pcbrendel@gmail.com>
Diff between multibias versions 1.6.1 dated 2024-12-02 and 1.6.2 dated 2025-01-08
DESCRIPTION | 8 MD5 | 216 +-- NAMESPACE | 74 - NEWS.md | 327 ++--- R/adjust_em.R | 782 ++++++------ R/adjust_em_om.R | 1530 ++++++++++++------------ R/adjust_em_sel.R | 1057 ++++++++--------- R/adjust_om.R | 648 +++++----- R/adjust_sel.R | 724 +++++------ R/adjust_uc.R | 734 ++++++----- R/adjust_uc_em.R | 1564 +++++++++++++------------ R/adjust_uc_em_sel.R | 1857 ++++++++++++++++-------------- R/adjust_uc_om.R | 1351 ++++++++++++--------- R/adjust_uc_om_sel.R | 1642 ++++++++++++++------------ R/adjust_uc_sel.R | 769 +++++++----- R/adust_om_sel.R | 734 +++++++---- R/causal_data.R | 376 +++--- R/data_em.R | 78 - R/data_em_om.R | 82 - R/data_em_sel.R | 84 - R/data_om.R | 78 - R/data_om_sel.R | 84 - R/data_other.R | 36 R/data_sel.R | 80 - R/data_uc.R | 98 - R/data_uc_em.R | 82 - R/data_uc_em_sel.R | 90 - R/data_uc_om.R | 82 - R/data_uc_om_sel.R | 90 - R/data_uc_sel.R | 84 - R/multibias-package.R | 14 R/utils.R | 227 ++- README.md | 124 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/multibias.R | 282 ++-- inst/doc/multibias.Rmd | 444 +++---- inst/doc/multibias.html | 1295 ++++++++++---------- man/adjust_em.Rd | 168 +- man/adjust_em_om.Rd | 280 ++-- man/adjust_em_sel.Rd | 194 +-- man/adjust_emc.Rd | 28 man/adjust_emc_omc.Rd | 44 man/adjust_emc_sel.Rd | 28 man/adjust_om.Rd | 166 +- man/adjust_om_sel.Rd | 162 +- man/adjust_omc.Rd | 28 man/adjust_omc_sel.Rd | 28 man/adjust_sel.Rd | 162 +- man/adjust_uc.Rd | 164 +- man/adjust_uc_em.Rd | 244 ++- man/adjust_uc_em_sel.Rd | 276 ++-- man/adjust_uc_emc.Rd | 44 man/adjust_uc_emc_sel.Rd | 48 man/adjust_uc_om.Rd | 250 ++-- man/adjust_uc_om_sel.Rd | 284 ++-- man/adjust_uc_omc.Rd | 44 man/adjust_uc_omc_sel.Rd | 48 man/adjust_uc_sel.Rd | 155 +- man/data_observed.Rd | 68 - man/data_validation.Rd | 110 - man/df_em.Rd | 56 man/df_em_om.Rd | 58 man/df_em_om_source.Rd | 62 - man/df_em_sel.Rd | 60 man/df_em_sel_source.Rd | 62 - man/df_em_source.Rd | 60 man/df_om.Rd | 56 man/df_om_sel.Rd | 60 man/df_om_sel_source.Rd | 62 - man/df_om_source.Rd | 60 man/df_sel.Rd | 58 man/df_sel_source.Rd | 60 man/df_uc.Rd | 64 - man/df_uc_em.Rd | 58 man/df_uc_em_sel.Rd | 64 - man/df_uc_em_sel_source.Rd | 64 - man/df_uc_em_source.Rd | 62 - man/df_uc_om.Rd | 58 man/df_uc_om_sel.Rd | 64 - man/df_uc_om_sel_source.Rd | 64 - man/df_uc_om_source.Rd | 62 - man/df_uc_sel.Rd | 60 man/df_uc_sel_source.Rd | 62 - man/df_uc_source.Rd | 72 - man/evans.Rd | 62 - man/figures/lifecycle-archived.svg | 42 man/figures/lifecycle-defunct.svg | 42 man/figures/lifecycle-deprecated.svg | 42 man/figures/lifecycle-experimental.svg | 42 man/figures/lifecycle-maturing.svg | 42 man/figures/lifecycle-questioning.svg | 42 man/figures/lifecycle-soft-deprecated.svg | 42 man/figures/lifecycle-stable.svg | 58 man/figures/lifecycle-superseded.svg | 42 man/multibias-package.Rd | 50 tests/testthat/test-adjust_em.R | 586 ++++----- tests/testthat/test-adjust_em_om.R | 1226 +++++++++---------- tests/testthat/test-adjust_em_sel.R | 730 +++++------ tests/testthat/test-adjust_om.R | 574 ++++----- tests/testthat/test-adjust_om_sel.R | 718 +++++------ tests/testthat/test-adjust_sel.R | 518 ++++---- tests/testthat/test-adjust_uc.R | 558 ++++----- tests/testthat/test-adjust_uc_em.R | 1177 +++++++++---------- tests/testthat/test-adjust_uc_em_sel.R | 1474 ++++++++++++----------- tests/testthat/test-adjust_uc_om.R | 1113 +++++++++-------- tests/testthat/test-adjust_uc_om_sel.R | 1474 ++++++++++++----------- tests/testthat/test-adjust_uc_sel.R | 691 +++++------ vignettes/multibias.Rmd | 444 +++---- 109 files changed, 17847 insertions(+), 16260 deletions(-)
Title: Bayesian Latent Variable Analysis
Description: Fit a variety of Bayesian latent variable models, including confirmatory
factor analysis, structural equation models, and latent growth curve models. References: Merkle & Rosseel (2018) <doi:10.18637/jss.v085.i04>; Merkle et al. (2021) <doi:10.18637/jss.v100.i06>.
Author: Edgar Merkle [aut, cre] ,
Yves Rosseel [aut],
Ben Goodrich [aut],
Mauricio Garnier-Villarreal [ctb]
,
Terrence D. Jorgensen [ctb] ,
Huub Hoofs [ctb] ,
Rens van de Schoot [ctb] ,
Andrew Johnson [ctb] ,
Matthew Emery [ctb]
Maintainer: Edgar Merkle <merklee@missouri.edu>
Diff between blavaan versions 0.5-6 dated 2024-09-04 and 0.5-8 dated 2025-01-08
DESCRIPTION | 15 ++++++++------- MD5 | 16 ++++++++-------- NEWS.md | 10 ++++++++++ R/blav_utils.R | 3 ++- R/blavaan.R | 27 ++++++++++++++++----------- R/lav_export_stanmarg.R | 22 +++++++++++++++------- R/stanmarg_data.R | 12 +++++++++--- inst/stan/stanmarg.stan | 36 +++++++++++++++++++++--------------- inst/testdata/sysdata.rda |binary 9 files changed, 89 insertions(+), 52 deletions(-)
Title: Bivariate Poisson Distribution
Description: Maximum likelihood estimation, random values generation, density computation and other functions for the bivariate Poisson distribution. References include: Kawamura K. (1984). "Direct calculation of maximum likelihood estimator for the bivariate Poisson distribution". Kodai Mathematical Journal, 7(2): 211--221. <doi:10.2996/kmj/1138036908>. Kocherlakota S. and Kocherlakota K. (1992). "Bivariate discrete distributions". CRC Press. <doi:10.1201/9781315138480>. Karlis D. and Ntzoufras I. (2003). "Analysis of sports data by using bivariate Poisson models". Journal of the Royal Statistical Society: Series D (The Statistician), 52(3): 381--393. <doi:10.1111/1467-9884.00366>.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between bivpois versions 1.0 dated 2023-10-19 and 1.1 dated 2025-01-08
DESCRIPTION | 9 ++++--- MD5 | 20 +++++++++------- NAMESPACE | 4 +-- R/bp.contour.R |only R/bp.gof.R | 6 +--- R/bp.gof2.R | 8 ++---- R/bp.mle.R | 59 +++++++++++++++++++++++++++---------------------- R/bp.mle2.R | 39 +++++++++++++++++++------------- R/dbp.R | 19 ++++++++------- R/lambda3.profile.R | 32 +++++++++++++++----------- man/bivpois-package.Rd | 4 +-- man/bp.contour.Rd |only 12 files changed, 110 insertions(+), 90 deletions(-)
Title: Geometric Morphometric Tools to Align, Scale, and Compare
"Shape" of Menstrual Cycle Hormones
Description: Mitteroecker & Gunz (2009) <doi:10.1007/s11692-009-9055-x> describe
how geometric morphometric methods allow researchers to quantify the size
and shape of physical biological structures. We provide tools to extend geometric
morphometric principles to the study of non-physical structures, hormone profiles,
as outlined in Ehrlich et al (2021) <doi:10.1002/ajpa.24514>. Easily transform
daily measures into multivariate landmark-based data. Includes custom functions
to apply multivariate methods for data exploration as well as hypothesis testing.
Also includes 'shiny' web app to streamline data exploration. Developed to study
menstrual cycle hormones but functions have been generalized and should be
applicable to any biomarker over any time period.
Author: Daniel Ehrlich [aut, cre]
Maintainer: Daniel Ehrlich <dan.ehrlich.e@gmail.com>
Diff between moRphomenses versions 1.0.2 dated 2024-12-12 and 1.0.3 dated 2025-01-08
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/explore.R | 36 ++++++++++++++++++++++++++---------- man/mm_Phenotype.Rd | 4 ++-- man/mm_PlotArray.Rd | 6 +++++- man/mm_grps_PlotArray.Rd | 8 ++++++-- 6 files changed, 47 insertions(+), 23 deletions(-)
Title: Customized Training for Lasso and Elastic-Net Regularized
Generalized Linear Models
Description: Customized training is a simple technique for transductive
learning, when the test covariates are known at the time of training. The
method identifies a subset of the training set to serve as the training set
for each of a few identified subsets in the training set. This package
implements customized training for the glmnet() and cv.glmnet() functions.
Author: Scott Powers [aut, cre],
Trevor Hastie [aut],
Robert Tibshirani [aut]
Maintainer: Scott Powers <saberpowers@gmail.com>
Diff between customizedTraining versions 1.2 dated 2019-01-29 and 1.3 dated 2025-01-08
DESCRIPTION | 24 +++- MD5 | 54 +++++----- NAMESPACE | 28 ++--- R/customizedGlmnet.R | 117 ++++++++++++++++++++++- R/cv.customizedGlmnet.R | 144 +++++++++++++++++++++++++++- R/nonzero.R | 13 ++ R/nonzero.customizedGlmnet.R | 61 ++++++++++++ R/nonzero.singleton.R | 11 ++ R/plot.customizedGlmnet.R | 67 ++++++++++++- R/plot.cv.customizedGlmnet.R | 96 +++++++++++++++++++ R/predict.customizedGlmnet.R | 66 ++++++++++++- R/predict.cv.customizedGlmnet.R | 97 +++++++++++++++++++ R/predict.singleton.R | 11 ++ R/print.customizedGlmnet.R | 54 ++++++++++ R/print.cv.customizedGlmnet.R | 93 ++++++++++++++++++ README.md | 2 man/customizedGlmnet.Rd | 154 +++++++++++------------------- man/cv.customizedGlmnet.Rd | 185 +++++++++++++------------------------ man/nonzero.Rd | 53 +--------- man/nonzero.customizedGlmnet.Rd | 60 ++---------- man/nonzero.singleton.Rd | 55 +---------- man/plot.customizedGlmnet.Rd | 62 ++---------- man/plot.cv.customizedGlmnet.Rd | 61 ++---------- man/predict.customizedGlmnet.Rd | 67 +++---------- man/predict.cv.customizedGlmnet.Rd | 52 ++-------- man/predict.singleton.Rd | 65 ++----------- man/print.customizedGlmnet.Rd | 56 ++--------- man/print.cv.customizedGlmnet.Rd | 57 ++--------- 28 files changed, 1106 insertions(+), 759 deletions(-)
More information about customizedTraining at CRAN
Permanent link
Title: Classes and Methods for Training and Using Binary Prediction
Models
Description: Defines classes and methods to learn models and use them
to predict binary outcomes. These are generic tools, but we also
include specific examples for many common classifiers.
Author: Kevin R. Coombes [aut, cre]
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between Modeler versions 3.4.5 dated 2019-05-06 and 3.4.7 dated 2025-01-08
DESCRIPTION | 16 ++++++++++------ MD5 | 8 ++++---- build/vignette.rds |binary inst/doc/Modeler.pdf |binary man/learnRPART.Rd | 2 +- 5 files changed, 15 insertions(+), 11 deletions(-)
Title: Minimalist Async Evaluation Framework for R
Description: Designed for simplicity, a 'mirai' evaluates an R expression
asynchronously in a parallel process, locally or distributed over the
network, with the result automatically available upon completion. Modern
networking and concurrency built on 'nanonext' and 'NNG' (Nanomsg Next Gen)
ensure reliable and efficient scheduling, over fast inter-process
communications or TCP/IP secured by TLS. Advantages include being inherently
queued thus handling many more tasks than available processes, no storage on
the file system, support for otherwise non-exportable reference objects, an
event-driven promises implementation, and built-in asynchronous parallel
map.
Author: Charlie Gao [aut, cre] ,
Joe Cheng [ctb],
Hibiki AI Limited [cph],
Posit Software, PBC [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between mirai versions 1.3.1 dated 2024-11-15 and 2.0.0 dated 2025-01-08
DESCRIPTION | 13 - MD5 | 122 ++++++------ NAMESPACE | 6 NEWS.md | 38 +++ R/daemon.R | 222 +++++++++++++++-------- R/daemons.R | 414 ++++++++++++++++++------------------------- R/dispatcher.R | 356 +++++++++++++++++++++++++----------- R/launchers.R | 167 ++++++----------- R/map.R | 65 +++--- R/mirai-package.R | 24 +- R/mirai.R | 188 +++++++++++-------- R/next.R | 6 R/parallel.R | 10 - R/promises.R | 4 README.md | 6 inst/CITATION | 2 inst/doc/databases.Rmd | 13 - inst/doc/databases.html | 68 +++---- inst/doc/mirai.Rmd | 270 +++++++++++----------------- inst/doc/mirai.html | 308 ++++++++++++++----------------- inst/doc/parallel.Rmd | 14 - inst/doc/parallel.html | 69 +++---- inst/doc/plumber.Rmd | 40 ++-- inst/doc/plumber.html | 95 +++++---- inst/doc/promises.Rmd | 2 inst/doc/promises.html | 57 +++-- inst/doc/shiny.Rmd | 15 + inst/doc/shiny.html | 69 +++---- inst/doc/torch.Rmd | 62 +++--- inst/doc/torch.html | 121 ++++++------ man/call_mirai.Rd | 7 man/collect_mirai.Rd | 30 +-- man/daemon.Rd | 66 ++---- man/daemons.Rd | 163 ++++++---------- man/dispatcher.Rd | 43 +--- man/dot-flat.Rd | 6 man/everywhere.Rd | 56 +++-- man/host_url.Rd | 10 - man/is_mirai.Rd | 2 man/launch_local.Rd | 51 ++--- man/mirai.Rd | 29 +-- man/mirai_map.Rd | 6 man/remote_config.Rd | 34 +-- man/saisei.Rd | 46 ---- man/serial_config.Rd | 2 man/status.Rd | 44 +--- man/stop_mirai.Rd | 24 +- man/with.miraiDaemons.Rd | 8 tests/tests.R | 242 ++++++++++++++----------- vignettes/databases.Rmd | 13 - vignettes/databases.Rmd.orig | 11 - vignettes/mirai.Rmd | 270 +++++++++++----------------- vignettes/mirai.Rmd.orig | 135 +++++--------- vignettes/parallel.Rmd | 14 - vignettes/plumber.Rmd | 40 ++-- vignettes/plumber.Rmd.orig | 8 vignettes/promises.Rmd | 2 vignettes/promises.Rmd.orig | 2 vignettes/shiny.Rmd | 15 + vignettes/shiny.Rmd.orig | 15 + vignettes/torch.Rmd | 62 +++--- vignettes/torch.Rmd.orig | 16 - 62 files changed, 2153 insertions(+), 2165 deletions(-)
Title: Physics-Informed Spatial and Functional Data Analysis
Description: An implementation of regression models with partial differential regularizations, making use of the Finite Element Method. The models efficiently handle data distributed over irregularly shaped domains and can comply with various conditions at the boundaries of the domain. A priori information about the spatial structure of the phenomenon under study can be incorporated in the model via the differential regularization. See Sangalli, L. M. (2021) <doi:10.1111/insr.12444> "Spatial Regression With Partial Differential Equation Regularisation" for an overview. The release 1.1-9 requires R (>= 4.2.0) to be installed on windows machines.
Author: Eleonora Arnone [aut, cre],
Aldo Clemente [aut],
Laura M. Sangalli [aut],
Eardi Lila [aut],
Jim Ramsay [aut],
Luca Formaggia [aut],
Giovanni Ardenghi [ctb],
Blerta Begu [ctb],
Michele Cavazzutti [ctb],
Alessandra Colli [ctb],
Alberto Colombo [ctb],
L [...truncated...]
Maintainer: Eleonora Arnone <eleonora.arnone@polimi.it>
Diff between fdaPDE versions 1.1-20 dated 2024-09-17 and 1.1-21 dated 2025-01-08
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- R/DE.R | 6 +++--- R/DE_CPP.R | 4 ++-- R/DE_init.R | 15 +++------------ R/DE_init_CPP.R | 6 ++++++ R/DE_init_CPP_time.R | 6 ++++++ R/DE_init_time.R | 15 +++------------ R/DE_time.R | 6 +++--- R/mesh.R | 8 ++++---- man/DE.FEM.Rd | 4 ++-- man/DE.FEM.time.Rd | 4 ++-- man/create.mesh.2.5D.Rd | 2 +- man/create.mesh.2D.Rd | 2 +- man/create.mesh.3D.Rd | 2 +- 15 files changed, 55 insertions(+), 61 deletions(-)
Title: Functions to Work with NCBI Accessions and Taxonomy
Description: Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to download NCBI data dumps and create a local database for fast and local taxonomic assignment.
Author: Scott Sherrill-Mix [aut, cre]
Maintainer: Scott Sherrill-Mix <ssm@msu.edu>
Diff between taxonomizr versions 0.10.6 dated 2023-12-15 and 0.10.7 dated 2025-01-08
DESCRIPTION | 10 MD5 | 16 - R/taxa.R | 2 README.md | 74 +++--- build/vignette.rds |binary inst/doc/usage.R | 4 inst/doc/usage.Rmd | 6 inst/doc/usage.html | 572 +++++++++++++++++++++++++++++++++++----------------- vignettes/usage.Rmd | 6 9 files changed, 455 insertions(+), 235 deletions(-)
Title: Tidy Tools for Visualizing Mixture Models
Description: The main function, plot_mm(), is used for (gg)plotting output from mixture models,
including both densities and overlaying mixture weight component curves from the fit models in line with the
tidy principles. The package includes several additional functions for added plot customization.
Supported model objects include: 'mixtools', 'EMCluster', and 'flexmix', with more from each in active dev.
Supported mixture model specifications include mixtures of univariate Gaussians, multivariate Gaussians, Gammas,
logistic regressions, linear regressions, and Poisson regressions.
Author: Philip Waggoner [aut, cre],
Fong Chan [aut, ctb],
Lu Zhang [aut, ctb]
Maintainer: Philip Waggoner <philip.waggoner@gmail.com>
Diff between plotmm versions 0.1.1 dated 2022-11-09 and 0.1.2 dated 2025-01-08
DESCRIPTION | 15 + MD5 | 38 ++-- NEWS | 5 R/plot_cut_point.R | 2 R/plot_gmm.R | 2 R/plot_mix_comps.R | 2 R/plot_mix_comps_normal.R | 2 R/plot_mm.R | 2 build/vignette.rds |binary inst/doc/Getting-Started.R | 166 +++++++++++--------- inst/doc/Getting-Started.Rmd | 28 +++ inst/doc/Getting-Started.html | 325 +++++++++++++++++++---------------------- man/plot_cut_point.Rd | 2 man/plot_gmm.Rd | 2 man/plot_mix_comps.Rd | 2 man/plot_mix_comps_normal.Rd | 2 man/plot_mm.Rd | 2 tests/testthat/test_plot_gmm.R | 22 ++ tests/testthat/test_plot_mm.R | 22 ++ vignettes/Getting-Started.Rmd | 28 +++ 20 files changed, 390 insertions(+), 279 deletions(-)
Title: Search Data Frames for Personally Identifiable Information
Description: Check a data frame for personal information, including names, location, disability status, and geo-coordinates.
Author: Jacob Patterson-Stein [aut, cre]
Maintainer: Jacob Patterson-Stein <jacobpstein@gmail.com>
Diff between pii versions 1.0.0 dated 2024-10-21 and 1.1.0 dated 2025-01-08
DESCRIPTION | 6 +-- MD5 | 8 ++-- NEWS.md | 2 + R/check_PII.R | 94 +++++++++++++++++++++++++++++++++++++--------------------- README.md | 32 ++++++++++++------- 5 files changed, 90 insertions(+), 52 deletions(-)
Title: An Simplified Implementation of the 'network' Package
Functionality
Description: An implementation of some of the core 'network' package functionality based on a
simplified data structure that is faster in many research applications. This package is designed
for back-end use in the 'statnet' family of packages, including 'EpiModel'. Support is provided for
binary and weighted, directed and undirected, bipartite and unipartite networks; no current
support for multigraphs, hypergraphs, or loops.
Author: Samuel Jenness [cre, aut],
Steven M. Goodreau [aut],
Martina Morris [aut],
Adrien Le Guillou [aut],
Chad Klumb [aut],
Skye Bender-deMoll [ctb],
Pavel N. Krivitsky [ctb]
Maintainer: Samuel Jenness <samuel.m.jenness@emory.edu>
Diff between networkLite versions 1.0.5 dated 2023-03-10 and 1.1.0 dated 2025-01-08
DESCRIPTION | 23 +++--- MD5 | 36 +++++----- NAMESPACE | 7 ++ R/add_edges.R | 9 -- R/add_vertices.R | 34 +++++++++- R/as_networkLite.R | 6 - R/attribute_methods.R | 52 ++++----------- R/constructors.R | 8 +- R/delete_edges.R | 5 - R/delete_vertices.R | 44 ++++++++++++- R/matrix_conversions.R | 35 ++++++---- R/misc.R | 12 +-- R/networkLite-package.R | 6 - R/to_network_networkLite.R | 2 R/utils.R | 18 ++--- man/get.inducedSubgraph.networkLite.Rd |only man/matrix_conversions.Rd | 10 ++- man/networkLite-package.Rd | 4 - man/permute.vertexIDs.networkLite.Rd |only tests/testthat/test-networkLite.R | 110 ++++++++++++++++++++++++++------- 20 files changed, 272 insertions(+), 149 deletions(-)
Title: Tools to Calibrate and Work with NEON Atmospheric Isotope Data
Description: Functions for downloading,
calibrating, and analyzing atmospheric isotope data bundled
into the eddy covariance data products of the National Ecological
Observatory Network (NEON) <https://www.neonscience.org>.
Calibration tools are provided for carbon and water isotope products.
Carbon isotope calibration details are found in Fiorella et al. (2021)
<doi:10.1029/2020JG005862>, and the readme
file at <https://github.com/lanl/NEONiso>. Tools for calibrating water
isotope products have been added as of 0.6.0, but have known deficiencies
and should be considered experimental and unsupported.
Author: Rich Fiorella [aut, cre]
Maintainer: Rich Fiorella <rfiorella@lanl.gov>
Diff between NEONiso versions 0.7.0 dated 2024-04-05 and 0.7.1 dated 2025-01-08
NEONiso-0.7.0/NEONiso/R/calibrate_ambient_carbon_Bowling2003.R |only NEONiso-0.7.0/NEONiso/R/excised.R |only NEONiso-0.7.0/NEONiso/build/partial.rdb |only NEONiso-0.7.0/NEONiso/man/calibrate_ambient_carbon_Bowling2003.Rd |only NEONiso-0.7.0/NEONiso/man/copy_qfqm_group.Rd |only NEONiso-0.7.0/NEONiso/man/copy_ucrt_group.Rd |only NEONiso-0.7.0/NEONiso/man/write_qfqm.Rd |only NEONiso-0.7.0/NEONiso/man/write_ucrt.Rd |only NEONiso-0.7.1/NEONiso/DESCRIPTION | 10 NEONiso-0.7.1/NEONiso/MD5 | 130 ++++------ NEONiso-0.7.1/NEONiso/NEWS.md | 11 NEONiso-0.7.1/NEONiso/R/NEONiso-package.R | 8 NEONiso-0.7.1/NEONiso/R/calibrate_ambient_carbon_gainoffset.R |only NEONiso-0.7.1/NEONiso/R/calibrate_ambient_carbon_linreg.R | 14 - NEONiso-0.7.1/NEONiso/R/calibrate_ambient_water_isotopes.R | 14 - NEONiso-0.7.1/NEONiso/R/calibrate_carbon.R | 24 + NEONiso-0.7.1/NEONiso/R/calibrate_water.R | 2 NEONiso-0.7.1/NEONiso/R/filtering_functions.R | 7 NEONiso-0.7.1/NEONiso/R/isotope_conversions.R | 31 ++ NEONiso-0.7.1/NEONiso/R/output_functions.R | 27 +- NEONiso-0.7.1/NEONiso/R/quality_control.R | 21 + NEONiso-0.7.1/NEONiso/R/reference_data_extraction.R | 12 NEONiso-0.7.1/NEONiso/R/reference_data_regression.R | 67 +++-- NEONiso-0.7.1/NEONiso/R/reference_data_selection.R | 2 NEONiso-0.7.1/NEONiso/R/restructure_data.R | 31 +- NEONiso-0.7.1/NEONiso/R/standard_corrections.R | 7 NEONiso-0.7.1/NEONiso/R/time_functions.R | 9 NEONiso-0.7.1/NEONiso/R/utility_functions.R | 31 +- NEONiso-0.7.1/NEONiso/build/vignette.rds |binary NEONiso-0.7.1/NEONiso/inst/doc/example_workflow.html | 1 NEONiso-0.7.1/NEONiso/man/NEONiso-package.Rd | 7 NEONiso-0.7.1/NEONiso/man/R_to_delta.Rd | 5 NEONiso-0.7.1/NEONiso/man/calculate_12CO2.Rd | 7 NEONiso-0.7.1/NEONiso/man/calculate_13CO2.Rd | 7 NEONiso-0.7.1/NEONiso/man/calibrate_ambient_carbon_gainoffset.Rd |only NEONiso-0.7.1/NEONiso/man/calibrate_ambient_carbon_linreg.Rd | 10 NEONiso-0.7.1/NEONiso/man/calibrate_ambient_water_linreg.Rd | 8 NEONiso-0.7.1/NEONiso/man/calibrate_carbon.Rd | 2 NEONiso-0.7.1/NEONiso/man/calibrate_water.Rd | 2 NEONiso-0.7.1/NEONiso/man/carbon_regression_plots.Rd | 5 NEONiso-0.7.1/NEONiso/man/convert_NEONhdf5_to_POSIXct_time.Rd | 5 NEONiso-0.7.1/NEONiso/man/convert_POSIXct_to_NEONhdf5_time.Rd | 4 NEONiso-0.7.1/NEONiso/man/correct_carbon_ref_output.Rd | 3 NEONiso-0.7.1/NEONiso/man/delta_to_R.Rd | 5 NEONiso-0.7.1/NEONiso/man/estimate_calibration_error.Rd | 10 NEONiso-0.7.1/NEONiso/man/extract_carbon_cal_data.Rd | 6 NEONiso-0.7.1/NEONiso/man/extract_water_calibration_data.Rd | 6 NEONiso-0.7.1/NEONiso/man/filter_median_brock86.Rd | 5 NEONiso-0.7.1/NEONiso/man/fit_carbon_regression.Rd | 15 - NEONiso-0.7.1/NEONiso/man/fit_water_regression.Rd | 7 NEONiso-0.7.1/NEONiso/man/get_Rstd.Rd | 7 NEONiso-0.7.1/NEONiso/man/ingest_data.Rd | 7 NEONiso-0.7.1/NEONiso/man/loocv.Rd | 6 NEONiso-0.7.1/NEONiso/man/manage_local_EC_archive.Rd | 6 NEONiso-0.7.1/NEONiso/man/restructure_carbon_variables.Rd | 5 NEONiso-0.7.1/NEONiso/man/restructure_variables.Rd | 6 NEONiso-0.7.1/NEONiso/man/restructure_water_variables.Rd | 5 NEONiso-0.7.1/NEONiso/man/select_daily_reference_data.Rd | 4 NEONiso-0.7.1/NEONiso/man/setup_output_file.Rd | 6 NEONiso-0.7.1/NEONiso/man/terrestrial_core_sites.Rd | 5 NEONiso-0.7.1/NEONiso/man/terrestrial_gradient_sites.Rd | 5 NEONiso-0.7.1/NEONiso/man/validate_analyte.Rd | 5 NEONiso-0.7.1/NEONiso/man/validate_output_file.Rd | 6 NEONiso-0.7.1/NEONiso/man/water_isotope_sites.Rd | 5 NEONiso-0.7.1/NEONiso/man/write_carbon_ambient_data.Rd | 2 NEONiso-0.7.1/NEONiso/man/write_carbon_calibration_data.Rd | 6 NEONiso-0.7.1/NEONiso/man/write_water_ambient_data.Rd | 2 NEONiso-0.7.1/NEONiso/man/write_water_calibration_data.Rd | 5 NEONiso-0.7.1/NEONiso/tests/testthat/test-data_regression.R | 14 - NEONiso-0.7.1/NEONiso/tests/testthat/test-high_level_functions.R | 33 +- NEONiso-0.7.1/NEONiso/tests/testthat/test-output_values.R | 14 - 71 files changed, 451 insertions(+), 281 deletions(-)
More information about voronoifortune at CRAN
Permanent link
Title: Template Model Builder: A General Random Effect Tool Inspired by
'ADMB'
Description: With this tool, a user should be able to quickly implement
complex random effect models through simple C++ templates. The package combines
'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector
library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain
an efficient implementation of the applied Laplace approximation with exact
derivatives. Key features are: Automatic sparseness detection, parallelism
through 'BLAS' and parallel user templates.
Author: Kasper Kristensen [aut, cre, cph],
Brad Bell [cph],
Hans Skaug [ctb],
Arni Magnusson [ctb],
Casper Berg [ctb],
Anders Nielsen [ctb],
Martin Maechler [ctb],
Theo Michelot [ctb],
Mollie Brooks [ctb],
Alex Forrence [ctb],
Christoffer Moesgaard Albertsen [...truncated...]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>
Diff between TMB versions 1.9.15 dated 2024-09-09 and 1.9.16 dated 2025-01-08
DESCRIPTION | 8 +- MD5 | 22 +++---- NEWS | 11 +++ R/sdreport.R | 7 ++ inst/include/TMBad/ad_blas.hpp | 4 + inst/include/atomic_math.hpp | 24 ++++++++ inst/include/convert.hpp | 32 +++++++++++ inst/include/lgamma.hpp | 73 ++++++++++++++++---------- inst/include/tiny_ad/atomic.hpp | 4 - inst/include/tiny_ad/robust/distributions.hpp | 39 ------------- inst/include/tmb_core.hpp | 4 - inst/include/tmbutils/tmbutils.hpp | 13 ++++ 12 files changed, 153 insertions(+), 88 deletions(-)
Title: Extensions to 'ggplot2' for Radiation Spectra
Description: Additional annotations, stats, geoms and scales for plotting
"light" spectra with 'ggplot2', together with specializations of ggplot()
and autoplot() methods for spectral data and waveband definitions
stored in objects of classes defined in package 'photobiology'. Part of the
'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] ,
Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggspectra versions 0.3.14 dated 2024-11-13 and 0.3.15 dated 2025-01-08
ggspectra-0.3.14/ggspectra/R/autoplot-utils.R |only ggspectra-0.3.14/ggspectra/man/validate_idfactor.Rd |only ggspectra-0.3.15/ggspectra/DESCRIPTION | 10 ggspectra-0.3.15/ggspectra/MD5 | 100 - ggspectra-0.3.15/ggspectra/NEWS.md | 30 ggspectra-0.3.15/ggspectra/R/autoplot-calibration-spct.R | 32 ggspectra-0.3.15/ggspectra/R/autoplot-cps-spct.r | 51 ggspectra-0.3.15/ggspectra/R/autoplot-filter-spct.r | 551 +++++----- ggspectra-0.3.15/ggspectra/R/autoplot-generic-spct.R | 6 ggspectra-0.3.15/ggspectra/R/autoplot-raw-spct.r | 58 - ggspectra-0.3.15/ggspectra/R/autoplot-response-spct.r | 217 ++- ggspectra-0.3.15/ggspectra/R/autoplot-source-spct.r | 338 ++---- ggspectra-0.3.15/ggspectra/R/autoplot-waveband.R | 96 - ggspectra-0.3.15/ggspectra/R/autotitle.R | 9 ggspectra-0.3.15/ggspectra/R/axis-utils-calibration-spct.R | 15 ggspectra-0.3.15/ggspectra/R/axis-utils-cps-spct.R | 32 ggspectra-0.3.15/ggspectra/R/axis-utils-filter-spct.R | 108 + ggspectra-0.3.15/ggspectra/R/axis-utils-raw-spct.R | 36 ggspectra-0.3.15/ggspectra/R/axis-utils-response-spct.R | 43 ggspectra-0.3.15/ggspectra/R/axis-utils-source-spct.R | 67 - ggspectra-0.3.15/ggspectra/R/utils-internal.R |only ggspectra-0.3.15/ggspectra/README.md | 19 ggspectra-0.3.15/ggspectra/inst/doc/userguide-0-r4p-introduction.html | 2 ggspectra-0.3.15/ggspectra/inst/doc/userguide1-grammar.html | 128 +- ggspectra-0.3.15/ggspectra/inst/doc/userguide2-autoplot-methods.R | 3 ggspectra-0.3.15/ggspectra/inst/doc/userguide2-autoplot-methods.Rmd | 8 ggspectra-0.3.15/ggspectra/inst/doc/userguide2-autoplot-methods.html | 309 ++--- ggspectra-0.3.15/ggspectra/man/apply_normalization.Rd |only ggspectra-0.3.15/ggspectra/man/autoplot.calibration_spct.Rd | 46 ggspectra-0.3.15/ggspectra/man/autoplot.cps_spct.Rd | 48 ggspectra-0.3.15/ggspectra/man/autoplot.filter_spct.Rd | 41 ggspectra-0.3.15/ggspectra/man/autoplot.generic_spct.Rd | 20 ggspectra-0.3.15/ggspectra/man/autoplot.object_spct.Rd | 39 ggspectra-0.3.15/ggspectra/man/autoplot.raw_spct.Rd | 48 ggspectra-0.3.15/ggspectra/man/autoplot.reflector_spct.Rd | 46 ggspectra-0.3.15/ggspectra/man/autoplot.response_spct.Rd | 65 - ggspectra-0.3.15/ggspectra/man/autoplot.source_spct.Rd | 53 ggspectra-0.3.15/ggspectra/man/autoplot.waveband.Rd | 60 - ggspectra-0.3.15/ggspectra/man/check_idfactor_arg.Rd |only ggspectra-0.3.15/ggspectra/man/duration2character.Rd | 7 ggspectra-0.3.15/ggspectra/man/figures/README-example0-1.png |binary ggspectra-0.3.15/ggspectra/man/figures/README-example1-1.png |binary ggspectra-0.3.15/ggspectra/man/figures/README-example2-1.png |binary ggspectra-0.3.15/ggspectra/man/raw_plot.Rd | 1 ggspectra-0.3.15/ggspectra/man/rename_idfactor.Rd |only ggspectra-0.3.15/ggspectra/man/scale_y_A_continuous.Rd | 17 ggspectra-0.3.15/ggspectra/man/scale_y_Rfr_continuous.Rd | 21 ggspectra-0.3.15/ggspectra/man/scale_y_Tfr_continuous.Rd | 20 ggspectra-0.3.15/ggspectra/man/scale_y_counts_continuous.Rd | 24 ggspectra-0.3.15/ggspectra/man/scale_y_cps_continuous.Rd | 27 ggspectra-0.3.15/ggspectra/man/scale_y_multipliers_continuous.Rd | 4 ggspectra-0.3.15/ggspectra/man/scale_y_s.e.irrad_continuous.Rd | 40 ggspectra-0.3.15/ggspectra/man/scale_y_s.e.response_continuous.Rd | 23 ggspectra-0.3.15/ggspectra/vignettes/userguide2-autoplot-methods.Rmd | 8 54 files changed, 1535 insertions(+), 1391 deletions(-)
Title: Business Days Calculations and Utilities
Description: Business days calculations based on a list of holidays and
nonworking weekdays. Quite useful for fixed income and derivatives pricing.
Author: Wilson Freitas [aut, cre]
Maintainer: Wilson Freitas <wilson.freitas@gmail.com>
Diff between bizdays versions 1.0.16 dated 2024-02-12 and 1.0.17 dated 2025-01-08
DESCRIPTION | 14 +++++++++----- MD5 | 12 ++++++------ NEWS.md | 4 ++++ inst/doc/Creating_Calendars.html | 4 ++-- inst/doc/Financial_and_non_financial.html | 4 ++-- inst/doc/bizdays.html | 8 ++++---- inst/extdata/Brazil_B3.json | 15 +++++++++++++-- 7 files changed, 40 insertions(+), 21 deletions(-)
More information about archeofrag.gui at CRAN
Permanent link
Title: Retrieve Global River Gauge Data
Description: Provides access to global river gauge data from a variety of national-level river agencies. The package interfaces with the national-level agency websites to provide access to river gauge locations, river discharge, and river stage. Currently, the package is available for the following countries: Australia, Brazil, Canada, Chile, France, Japan, South Africa, the United Kingdom, and the United States.
Author: Ryan Riggs [aut, cre] ,
Simon Moulds [aut] ,
Michel Wortmann [aut] ,
Louise Slater [aut] ,
George Allen [aut]
Maintainer: Ryan Riggs <ryanriggs7@gmail.com>
Diff between RivRetrieve versions 0.1.5 dated 2024-04-22 and 0.1.6 dated 2025-01-08
DESCRIPTION | 6 - MD5 | 14 +- NEWS.md | 4 README.md | 4 inst/doc/my-vignette.R | 32 +++-- inst/doc/my-vignette.Rmd | 45 +++++--- inst/doc/my-vignette.html | 253 +++++++++++++++++----------------------------- vignettes/my-vignette.Rmd | 45 +++++--- 8 files changed, 187 insertions(+), 216 deletions(-)
Title: 'RStudio' Addins and 'Shiny' Modules for Medical Research
Description: 'RStudio' addins and 'Shiny' modules for descriptive statistics, regression and survival analysis.
Author: Jinseob Kim [aut, cre] ,
Zarathu [cph, fnd],
Hyunki Lee [aut],
Changwoo Lim [aut],
Jinhwan Kim [aut] ,
Yoonkyoung Jeon [aut],
Jaewoong Heo [aut],
Youngsun Park [aut] ,
Hyungwoo Jo [aut],
Jeongmin Seo [aut]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jsmodule versions 1.6.0 dated 2024-12-11 and 1.6.1 dated 2025-01-08
DESCRIPTION | 26 - MD5 | 40 + NEWS.md | 6 R/coxph.R | 61 +- R/forestcox.R | 54 +- R/forestglm.R | 10 R/jsPropensityGadget.R | 106 ++++ R/jsRepeatedGadget.R | 122 +++++ R/jsSurveyGadget.R | 702 +++++++++++++++++++-------------- R/kaplan.R | 44 +- R/roc.R | 220 +++++++++- R/tb1.R | 91 +++- build/vignette.rds |binary inst/doc/jsmodule.html | 4 inst/doc/jsmodule_subgroup_cmprsk.R |only inst/doc/jsmodule_subgroup_cmprsk.Rmd |only inst/doc/jsmodule_subgroup_cmprsk.html |only man/forestcoxServer.Rd | 5 man/forestglmServer.Rd | 5 vignettes/figures/cmprsk_cox.png |only vignettes/figures/cmprsk_kaplan.png |only vignettes/figures/cmprsk_subcox.png |only vignettes/figures/subgroup_cox.png |only vignettes/figures/sublog.png |only vignettes/figures/subreg.png |only vignettes/jsmodule_subgroup_cmprsk.Rmd |only 26 files changed, 1073 insertions(+), 423 deletions(-)
Title: Utilities for Interacting with the 'CTX' APIs
Description: Access chemical, hazard, bioactivity, and exposure data from the
Computational Toxicology and Exposure ('CTX') APIs
<https://www.epa.gov/comptox-tools/computational-toxicology-and-exposure-apis>.
'ctxR' was developed to streamline the process of accessing the information
available through the 'CTX' APIs without requiring prior knowledge of how to
use APIs. Most data is also available on the CompTox Chemical Dashboard
('CCD') <https://comptox.epa.gov/dashboard/> and other resources found at the
EPA Computational Toxicology and Exposure Online Resources
<https://www.epa.gov/comptox-tools>.
Author: Paul Kruse [aut, cre] ,
Caroline Ring [aut] ,
Madison Feshuk [ctb] ,
Carter Thunes [ctb],
Jason Brown [ctb]
Maintainer: Paul Kruse <kruse.paul@epa.gov>
Diff between ctxR versions 1.0.0 dated 2024-07-04 and 1.1.0 dated 2025-01-08
ctxR-1.0.0/ctxR/man/get_cancer_hazard_batch_old.Rd |only ctxR-1.0.0/ctxR/man/get_chem_info_batch_old.Rd |only ctxR-1.0.0/ctxR/man/get_ecotox_hazard_by_dtxsid_batch_old.Rd |only ctxR-1.0.0/ctxR/man/get_fate_by_dtxsid_batch_old.Rd |only ctxR-1.0.0/ctxR/man/get_genetox_details_batch_old.Rd |only ctxR-1.0.0/ctxR/man/get_genetox_summary_batch_old.Rd |only ctxR-1.0.0/ctxR/man/get_hazard_by_dtxsid_batch_old.Rd |only ctxR-1.0.0/ctxR/man/get_human_hazard_by_dtxsid_batch_old.Rd |only ctxR-1.0.0/ctxR/man/get_skin_eye_hazard_batch_old.Rd |only ctxR-1.0.0/ctxR/tests/testthat/bioactivity-batch/bioactivity/data/search/by-aeid |only ctxR-1.0.0/ctxR/tests/testthat/bioactivity-batch/bioactivity/data/search/by-dtxsid |only ctxR-1.0.0/ctxR/tests/testthat/chemical-batch/chemical/detail/search/by-dtxsid-9e51f1-cd40e5-POST.R |only ctxR-1.0.0/ctxR/tests/testthat/chemical-batch/chemical/fate/search/by-dtxsid-cd40e5-POST.R |only ctxR-1.0.0/ctxR/tests/testthat/chemical-batch/chemical/list/search/by-dtxsid/DTXSID7020182.R |only ctxR-1.0.0/ctxR/tests/testthat/chemical-batch/chemical/list/search/by-name/BIOSOLIDS2021.R |only ctxR-1.0.0/ctxR/tests/testthat/chemical-batch/chemical/list/search/by-type/federal.R |only ctxR-1.0.0/ctxR/tests/testthat/chemical-batch/chemical/msready/search/by-dtxcid/DTXCID30182.R |only ctxR-1.0.0/ctxR/tests/testthat/chemical-batch/chemical/msready/search/by-formula/CH4.R |only ctxR-1.0.0/ctxR/tests/testthat/chemical-batch/chemical/property/search/by-dtxsid-cd40e5-POST.R |only ctxR-1.0.0/ctxR/tests/testthat/chemical-batch/chemical/search/contain/DTXSID7020182.R |only ctxR-1.0.0/ctxR/tests/testthat/chemical-batch/chemical/search/equal-a5c27e-POST.R |only ctxR-1.0.0/ctxR/tests/testthat/chemical-batch/chemical/search/start-with/DTXSID7020182.R |only ctxR-1.0.0/ctxR/tests/testthat/chemical-batch/chemical/synonym/search/by-dtxsid |only ctxR-1.0.0/ctxR/tests/testthat/chemical-batch/chemical/synonym/search/by-dtxsid.R |only ctxR-1.0.0/ctxR/tests/testthat/chemical/chemical/detail/search/by-dtxsid-9e51f1-67ad88-POST.json |only ctxR-1.0.0/ctxR/tests/testthat/hazard-batch/hazard/cancer-summary/search/by-dtxsid-cd40e5-POST.R |only ctxR-1.0.0/ctxR/tests/testthat/hazard-batch/hazard/eco/search/by-dtxsid-cd40e5-POST.R |only ctxR-1.0.0/ctxR/tests/testthat/hazard-batch/hazard/genetox/details/search/by-dtxsid-cd40e5-POST.R |only ctxR-1.0.0/ctxR/tests/testthat/hazard-batch/hazard/genetox/summary/search/by-dtxsid-cd40e5-POST.R |only ctxR-1.0.0/ctxR/tests/testthat/hazard-batch/hazard/human/search/by-dtxsid-cd40e5-POST.R |only ctxR-1.0.0/ctxR/tests/testthat/hazard-batch/hazard/search/by-dtxsid-cd40e5-POST.R |only ctxR-1.0.0/ctxR/tests/testthat/hazard-batch/hazard/skin-eye/search/by-dtxsid-cd40e5-POST.R |only ctxR-1.1.0/ctxR/DESCRIPTION | 23 ctxR-1.1.0/ctxR/MD5 | 489 ctxR-1.1.0/ctxR/NAMESPACE | 15 ctxR-1.1.0/ctxR/NEWS.md | 51 ctxR-1.1.0/ctxR/R/bioactivity-APIs-batch.R | 135 ctxR-1.1.0/ctxR/R/bioactivity-APIs.R | 71 ctxR-1.1.0/ctxR/R/chemical-APIs-batch.R | 1323 ctxR-1.1.0/ctxR/R/chemical-APIs.R | 580 ctxR-1.1.0/ctxR/R/exposure-APIs-batch.R | 336 ctxR-1.1.0/ctxR/R/exposure-APIs.R | 242 ctxR-1.1.0/ctxR/R/hazard-APIs-batch.R | 497 ctxR-1.1.0/ctxR/R/hazard-APIs.R | 92 ctxR-1.1.0/ctxR/R/register_ctx.R | 20 ctxR-1.1.0/ctxR/README.md | 57 ctxR-1.1.0/ctxR/build/vignette.rds |binary ctxR-1.1.0/ctxR/inst/doc/Bioactivity.R | 45 ctxR-1.1.0/ctxR/inst/doc/Bioactivity.Rmd | 125 ctxR-1.1.0/ctxR/inst/doc/Bioactivity.html |15770 + ctxR-1.1.0/ctxR/inst/doc/Chemical.R | 89 ctxR-1.1.0/ctxR/inst/doc/Chemical.Rmd | 253 ctxR-1.1.0/ctxR/inst/doc/Chemical.html | 2048 ctxR-1.1.0/ctxR/inst/doc/Exposure.R | 53 ctxR-1.1.0/ctxR/inst/doc/Exposure.Rmd | 180 ctxR-1.1.0/ctxR/inst/doc/Exposure.html | 2136 ctxR-1.1.0/ctxR/inst/doc/Hazard.R | 17 ctxR-1.1.0/ctxR/inst/doc/Hazard.Rmd | 98 ctxR-1.1.0/ctxR/inst/doc/Hazard.html | 527 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ctxR-1.1.0/ctxR/tests/testthat/hazard-batch/hazard/search/by-dtxsid-cd40e5-POST.json |122962 +++++++--- ctxR-1.1.0/ctxR/tests/testthat/hazard-batch/hazard/search/by-dtxsid-ddb193-POST.json | 6 ctxR-1.1.0/ctxR/tests/testthat/hazard-batch/hazard/skin-eye/search/by-dtxsid-cd40e5-POST.json | 52 ctxR-1.1.0/ctxR/tests/testthat/hazard-batch/hazard/skin-eye/search/by-dtxsid-ddb193-POST.json | 6 ctxR-1.1.0/ctxR/tests/testthat/test-bioactivity-APIs-batch.R | 4 ctxR-1.1.0/ctxR/tests/testthat/test-bioactivity-APIs.R | 2 ctxR-1.1.0/ctxR/tests/testthat/test-chemical-APIs-batch.R | 178 ctxR-1.1.0/ctxR/tests/testthat/test-chemical-APIs.R | 71 ctxR-1.1.0/ctxR/tests/testthat/test-exposure-APIs-batch.R | 21 ctxR-1.1.0/ctxR/tests/testthat/test-exposure-APIs.R | 9 ctxR-1.1.0/ctxR/tests/testthat/test-hazard-APIs-batch.R | 14 ctxR-1.1.0/ctxR/vignettes/4/0/bioactivity/assay/search/by-aeid/700.json | 156 ctxR-1.1.0/ctxR/vignettes/4/0/bioactivity/assay/search/by-aeid/759.json | 2 ctxR-1.1.0/ctxR/vignettes/4/0/bioactivity/assay/search/by-aeid/891.json | 162 ctxR-1.1.0/ctxR/vignettes/4/0/bioactivity/data/search/by-aeid/704.json |18414 - ctxR-1.1.0/ctxR/vignettes/4/0/bioactivity/data/search/by-dtxsid/DTXSID30944145.json | 2128 ctxR-1.1.0/ctxR/vignettes/4/0/bioactivity/data/search/by-m4id/739695.json | 430 ctxR-1.1.0/ctxR/vignettes/4/0/bioactivity/data/search/by-spid/TP0000904H05.json | 3430 ctxR-1.1.0/ctxR/vignettes/4/0/bioactivity/data/summary/search/by-aeid/700.json | 14 ctxR-1.1.0/ctxR/vignettes/4/0/bioactivity/data/summary/search/by-aeid/759.json | 14 ctxR-1.1.0/ctxR/vignettes/4/0/bioactivity/data/summary/search/by-aeid/891.json | 14 ctxR-1.1.0/ctxR/vignettes/5/0/expo-demo |only ctxR-1.1.0/ctxR/vignettes/5/0/expo-gen |only ctxR-1.1.0/ctxR/vignettes/5/0/exposure/fun-use/category.json | 1284 ctxR-1.1.0/ctxR/vignettes/5/0/exposure/fun-use/probability/search/by-dtxsid/DTXSID0020232.json | 36 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|binary ctxR-1.1.0/ctxR/vignettes/Pictures/CCD_Batch_Search.png |binary ctxR-1.1.0/ctxR/vignettes/Pictures/CCD_Batch_Search_customize_export_results.png |binary ctxR-1.1.0/ctxR/vignettes/Pictures/CTX_API_Key_authentication.png |binary ctxR-1.1.0/ctxR/vignettes/Pictures/CTX_Chemical_API_endpoints.png |binary ctxR-1.1.0/ctxR/vignettes/Pictures/Get_Data_by_DTXSID_BOTTOM.png |binary ctxR-1.1.0/ctxR/vignettes/Pictures/Get_Data_by_DTXSID_TOP.png |binary ctxR-1.1.0/ctxR/vignettes/Pictures/ctxR_hex.png |only ctxR-1.1.0/ctxR/vignettes/css |only 270 files changed, 272674 insertions(+), 111402 deletions(-)
Title: Choose Univariate Class Intervals
Description: Selected commonly used methods for choosing univariate class intervals for mapping or other graphics purposes.
Author: Roger Bivand [aut, cre] ,
Bill Denney [ctb] ,
Richard Dunlap [ctb],
Diego Hernangomez [ctb] ,
Hisaji Ono [ctb],
Josiah Parry [ctb] ,
Matthieu Stigler [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between classInt versions 0.4-10 dated 2023-09-05 and 0.4-11 dated 2025-01-08
DESCRIPTION | 8 MD5 | 17 NEWS.md | 12 R/classInt.R | 21 build/vignette.rds |binary inst/doc/headtailsR.Rmd | 2 inst/doc/headtailsR.html | 1069 ++++++++++++++++++------------------ inst/tinytest/test_quantile_probs.R |only man/classIntervals.Rd | 4 vignettes/headtailsR.Rmd | 2 10 files changed, 582 insertions(+), 553 deletions(-)
Title: Bayesian Post-Estimation on the Mean Scale
Description: Computes Bayesian posterior distributions of predictions, marginal effects, and differences of marginal effects for various generalized linear models. Importantly, the posteriors are on the mean (response) scale, allowing for more natural interpretation than summaries on the link scale. Also, predictions and marginal effects of the count probabilities for Poisson and negative binomial models can be computed.
Author: David M. Dalenberg [aut, cre]
Maintainer: David M. Dalenberg <dalenbe2@gmail.com>
Diff between bayesMeanScale versions 0.2.0 dated 2024-12-20 and 0.2.1 dated 2025-01-08
bayesMeanScale-0.2.0/bayesMeanScale/R/sysdata.rda |only bayesMeanScale-0.2.1/bayesMeanScale/DESCRIPTION | 6 bayesMeanScale-0.2.1/bayesMeanScale/MD5 | 61 +-- bayesMeanScale-0.2.1/bayesMeanScale/NEWS.md | 4 bayesMeanScale-0.2.1/bayesMeanScale/R/bayes-count-marg-effects.R | 12 bayesMeanScale-0.2.1/bayesMeanScale/R/bayes-count-preds.R | 12 bayesMeanScale-0.2.1/bayesMeanScale/R/bayes-marg-compare.R | 4 bayesMeanScale-0.2.1/bayesMeanScale/R/bayes-marg-effects.R | 12 bayesMeanScale-0.2.1/bayesMeanScale/R/bayes-preds.R | 12 bayesMeanScale-0.2.1/bayesMeanScale/R/count-pred-table.R | 2 bayesMeanScale-0.2.1/bayesMeanScale/R/pred-table.R | 2 bayesMeanScale-0.2.1/bayesMeanScale/R/preds-error-check.R | 2 bayesMeanScale-0.2.1/bayesMeanScale/inst/doc/introduction.R | 8 bayesMeanScale-0.2.1/bayesMeanScale/inst/doc/introduction.Rmd | 16 bayesMeanScale-0.2.1/bayesMeanScale/inst/doc/introduction.html | 166 ++++------ bayesMeanScale-0.2.1/bayesMeanScale/man/bayesCountMargEffF.Rd | 9 bayesMeanScale-0.2.1/bayesMeanScale/man/bayesCountPredsF.Rd | 7 bayesMeanScale-0.2.1/bayesMeanScale/man/bayesMargCompareF.Rd | 10 bayesMeanScale-0.2.1/bayesMeanScale/man/bayesMargEffF.Rd | 11 bayesMeanScale-0.2.1/bayesMeanScale/man/bayesOrdinalMargEffF.Rd | 6 bayesMeanScale-0.2.1/bayesMeanScale/man/bayesOrdinalPredsF.Rd | 4 bayesMeanScale-0.2.1/bayesMeanScale/man/bayesPredsF.Rd | 6 bayesMeanScale-0.2.1/bayesMeanScale/tests/testthat/test-bayes-count-marg-effects.R | 1 bayesMeanScale-0.2.1/bayesMeanScale/tests/testthat/test-bayes-count-preds.R | 8 bayesMeanScale-0.2.1/bayesMeanScale/tests/testthat/test-bayes-ordinal-preds.R | 4 bayesMeanScale-0.2.1/bayesMeanScale/tests/testthat/test-bayes-preds.R | 4 bayesMeanScale-0.2.1/bayesMeanScale/tests/testthat/test-levels-prep.R | 4 bayesMeanScale-0.2.1/bayesMeanScale/tests/testthat/test-marg-effects-error-check.R | 2 bayesMeanScale-0.2.1/bayesMeanScale/tests/testthat/test-marg-effects.R | 2 bayesMeanScale-0.2.1/bayesMeanScale/tests/testthat/test-preds-error-check.R | 2 bayesMeanScale-0.2.1/bayesMeanScale/tests/testthat/test-preds-ordinal-error-check.R | 1 bayesMeanScale-0.2.1/bayesMeanScale/vignettes/introduction.Rmd | 16 32 files changed, 208 insertions(+), 208 deletions(-)
More information about bayesMeanScale at CRAN
Permanent link
Title: Accelerated Stability Kinetic Modelling
Description: Estimate the Šesták–Berggren kinetic model (degradation model) from experimental data. A
A closed-form (analytic) solution to the degradation model is implemented as a non-linear fit,
allowing for the extrapolation of the degradation of a drug product - both in time and
temperature. Parametric bootstrap, with kinetic parameters drawn from the multivariate
t-distribution, and analytical formulae (the delta method) are available options to calculate
the confidence and prediction intervals.
The results (modelling, extrapolations and statistical intervals) can be visualised
with multiple plots. The examples illustrate the accelerated stability modelling in drugs and
vaccines development.
Author: Bernard G Franq [aut, cph],
Ben Wells [cre],
Alex Ball [ctb]
Maintainer: Ben Wells <benwells@bayezian.com>
Diff between AccelStab versions 2.0.2 dated 2024-10-21 and 2.1.0 dated 2025-01-08
DESCRIPTION | 6 MD5 | 26 ++-- NAMESPACE | 1 NEWS.md | 19 +++ R/antigenicity.R | 46 +++---- R/step1_down.R | 22 ++- R/step1_down_basic.R |only R/step1_plot_CI.R | 164 +++++++++++++------------- R/step1_plot_diagnostic.R | 270 +++++++++++++++++++++++++++---------------- data/antigenicity.rda |binary man/antigenicity.Rd | 12 + man/step1_down.Rd | 8 - man/step1_down_basic.Rd |only man/step1_plot_CI.Rd | 2 man/step1_plot_diagnostic.Rd | 5 15 files changed, 350 insertions(+), 231 deletions(-)
Title: A Simple Interface for Interacting with 'WebDAV' Servers
Description: An easy-to-use interface for interacting with 'WebDAV' servers,
including 'OwnCloud'. It simplifies the use of 'WebDAV' methods such as COPY, MKCOL, MOVE, and others.
With built-in authentication and request handling, it allows for easy
management of files and directories over the 'WebDAV' protocol.
Author: Andre Leite [aut, cre],
Hugo Vaconcelos [aut],
Diogo Bezerra [aut]
Maintainer: Andre Leite <leite@castlab.org>
Diff between webdav versions 0.1.2 dated 2024-12-02 and 0.1.3 dated 2025-01-08
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/webdav.R | 31 ++++++++++++++++++++++++++++--- README.md | 2 +- inst/doc/env_variables.html | 9 +++++---- inst/doc/webdav.html | 9 +++++---- man/webdav_list_files.Rd | 9 ++++++++- 8 files changed, 63 insertions(+), 25 deletions(-)
Title: Datasets for Spatial Analysis
Description: Diverse spatial datasets for demonstrating, benchmarking and teaching spatial data analysis.
It includes R data of class sf (defined by the package 'sf'), Spatial ('sp'), and nb ('spdep').
Unlike other spatial data packages such as 'rnaturalearth' and 'maps',
it also contains data stored in a range of file formats including GeoJSON and GeoPackage, but from version 2.3.4, no longer ESRI Shapefile - use GeoPackage instead.
Some of the datasets are designed to illustrate specific analysis techniques.
cycle_hire() and cycle_hire_osm(), for example, is designed to illustrate point pattern analysis techniques.
Author: Roger Bivand [aut] ,
Jakub Nowosad [aut, cre] ,
Robin Lovelace [aut] ,
Angelos Mimis [ctb],
Mark Monmonier [ctb] ,
Greg Snow [ctb]
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between spData versions 2.3.3 dated 2024-09-02 and 2.3.4 dated 2025-01-08
spData-2.3.3/spData/inst/shapes/NY8_utm18.dbf |only spData-2.3.3/spData/inst/shapes/NY8_utm18.prj |only spData-2.3.3/spData/inst/shapes/NY8_utm18.shp |only spData-2.3.3/spData/inst/shapes/NY8_utm18.shx |only spData-2.3.3/spData/inst/shapes/auckland.dbf |only spData-2.3.3/spData/inst/shapes/auckland.shp |only spData-2.3.3/spData/inst/shapes/auckland.shx |only spData-2.3.3/spData/inst/shapes/baltim.dbf |only spData-2.3.3/spData/inst/shapes/baltim.shp |only spData-2.3.3/spData/inst/shapes/baltim.shx |only spData-2.3.3/spData/inst/shapes/boston_tracts.dbf |only spData-2.3.3/spData/inst/shapes/boston_tracts.prj |only spData-2.3.3/spData/inst/shapes/boston_tracts.shp |only spData-2.3.3/spData/inst/shapes/boston_tracts.shx |only spData-2.3.3/spData/inst/shapes/columbus.dbf |only spData-2.3.3/spData/inst/shapes/columbus.shp |only spData-2.3.3/spData/inst/shapes/columbus.shx |only spData-2.3.3/spData/inst/shapes/eire.dbf |only spData-2.3.3/spData/inst/shapes/eire.shp |only spData-2.3.3/spData/inst/shapes/eire.shx |only spData-2.3.3/spData/inst/shapes/sids.dbf |only spData-2.3.3/spData/inst/shapes/sids.shp |only spData-2.3.3/spData/inst/shapes/sids.shx |only spData-2.3.3/spData/inst/shapes/wheat.dbf |only spData-2.3.3/spData/inst/shapes/wheat.shp |only spData-2.3.3/spData/inst/shapes/wheat.shx |only spData-2.3.3/spData/inst/shapes/world.dbf |only spData-2.3.3/spData/inst/shapes/world.prj |only spData-2.3.3/spData/inst/shapes/world.shp |only spData-2.3.3/spData/inst/shapes/world.shx |only spData-2.3.4/spData/DESCRIPTION | 8 - spData-2.3.4/spData/MD5 | 45 +--------- spData-2.3.4/spData/NEWS.md | 12 ++ spData-2.3.4/spData/R/wheat.R | 2 spData-2.3.4/spData/README.md | 92 +++++++++++----------- spData-2.3.4/spData/data/nz.rda |binary spData-2.3.4/spData/data/nz_height.rda |binary spData-2.3.4/spData/man/figures |only spData-2.3.4/spData/man/wheat.Rd | 2 39 files changed, 70 insertions(+), 91 deletions(-)
Title: R Bayesian Evidence Synthesis Tools
Description: Tool-set to support Bayesian evidence synthesis. This
includes meta-analysis, (robust) prior derivation from historical
data, operating characteristics and analysis (1 and 2 sample
cases). Please refer to Weber et al. (2021) <doi:10.18637/jss.v100.i19>
for details on applying this package while Neuenschwander et al. (2010)
<doi:10.1177/1740774509356002> and Schmidli et al. (2014)
<doi:10.1111/biom.12242> explain details on the methodology.
Author: Novartis Pharma AG [cph],
Sebastian Weber [aut, cre],
Beat Neuenschwander [ctb],
Heinz Schmidli [ctb],
Baldur Magnusson [ctb],
Yue Li [ctb],
Satrajit Roychoudhury [ctb],
Trustees of Columbia University [cph]
Maintainer: Sebastian Weber <sebastian.weber@novartis.com>
Diff between RBesT versions 1.7-4 dated 2024-11-21 and 1.8-0 dated 2025-01-08
DESCRIPTION | 8 MD5 | 248 ++--- NEWS.md | 18 R/AS.R | 11 R/BinaryExactCI.R | 44 R/Curry.R | 11 R/EM_bmm_ab.R | 551 ++++++------ R/EM_bmm_mun.R | 465 +++++----- R/EM_gmm.R | 470 +++++----- R/EM_logLik.R | 12 R/EM_mnmm.R | 483 +++++----- R/EM_msmm.R | 406 ++++----- R/EM_plot.R | 314 +++---- R/KLdivmix.R | 15 R/RBesT-package.R | 2 R/SimSum.R | 24 R/automixfit.R | 69 - R/chains2sample.R | 13 R/colVars.R | 7 R/crohn.R | 11 R/dBetaBinomial.R | 19 R/decision1S.R | 76 - R/decision1S_boundary.R | 273 +++--- R/decision2S.R | 104 +- R/decision2S_boundary.R | 782 ++++++++--------- R/deprecation_message.R | 7 R/dlink.R | 140 +-- R/forest_plot.R | 158 +-- R/gMAP.R | 1344 +++++++++++++++--------------- R/get_color.R | 16 R/integrate_logit_log.R | 135 +-- R/knn.R | 145 +-- R/likelihood.R | 14 R/lodds.R | 10 R/log_inv_logit.R | 12 R/mix.R | 505 +++++------ R/mixbeta.R | 135 +-- R/mixcombine.R | 45 - R/mixdiff.R | 222 ++-- R/mixdist3.R | 43 R/mixess.R | 576 ++++++------ R/mixfit.R | 127 +- R/mixgamma.R | 147 +-- R/mixmode.R | 44 R/mixmvnorm.R | 253 ++--- R/mixnorm.R | 104 +- R/mixplot.R | 115 +- R/mixstanvar.R | 227 ++--- R/oc1S.R | 133 +- R/oc2S.R | 431 ++++----- R/plot_gMAP.R | 130 +- R/pos1S.R | 95 +- R/pos2S.R | 289 +++--- R/postmix.R | 173 +-- R/preddist.R | 79 - R/predict_gMAP.R | 232 ++--- R/robustify.R | 99 +- R/support.R | 8 R/sysdata.rda |binary R/uniroot_int.R | 96 +- R/zzz.R | 11 demo/oc2S-tte.R | 163 +-- demo/robustMAP.R | 345 +++---- inst/doc/RBesT.pdf |binary inst/doc/introduction.R | 195 ++-- inst/doc/introduction.Rmd | 191 ++-- inst/doc/introduction.html | 207 ++-- inst/examples/ess.R | 36 inst/examples/mixcombine.R | 6 inst/examples/predict_gMAP.R | 27 inst/examples/robustify.R | 12 inst/extra/run-oq.R | 9 inst/sbc/make_reference_rankhist.R | 148 +-- inst/sbc/sbc_report.R | 118 +- inst/sbc/sbc_report.html | 2 inst/sbc/sbc_report_plots.R | 1 inst/sbc/sbc_tools.R | 274 +++--- inst/stan/gMAP.stan | 250 +++-- inst/stan/include/copyright_novartis.stan | 2 man/AS.Rd | 11 man/BinaryExactCI.Rd | 6 man/automixfit.Rd | 7 man/crohn.Rd | 11 man/decision1S.Rd | 23 man/decision1S_boundary.Rd | 16 man/decision2S.Rd | 24 man/decision2S_boundary.Rd | 16 man/ess.Rd | 97 +- man/forest_plot.Rd | 15 man/gMAP.Rd | 75 - man/mix.Rd | 7 man/mixbeta.Rd | 8 man/mixcombine.Rd | 6 man/mixdiff.Rd | 20 man/mixfit.Rd | 4 man/mixgamma.Rd | 10 man/mixmvnorm.Rd | 9 man/mixnorm.Rd | 8 man/mixplot.Rd | 23 man/mixstanvar.Rd | 30 man/oc1S.Rd | 29 man/oc2S.Rd | 19 man/plot.EM.Rd | 6 man/pos1S.Rd | 15 man/pos2S.Rd | 10 man/postmix.Rd | 26 man/preddist.Rd | 22 man/predict.gMAP.Rd | 27 man/robustify.Rd | 12 src/stanExports_gMAP.h | 358 +++---- tests/testthat.R | 8 tests/testthat/helper-utils.R | 18 tests/testthat/test-EM.R | 272 +++--- tests/testthat/test-gMAP.R | 334 +++---- tests/testthat/test-mixdiff.R | 146 +-- tests/testthat/test-mixdist.R | 315 ++++--- tests/testthat/test-mixstanvar.R | 378 +++++--- tests/testthat/test-oc1S.R | 129 +- tests/testthat/test-oc2S.R | 620 +++++++------ tests/testthat/test-pos1S.R | 68 - tests/testthat/test-pos2S.R | 182 ++-- tests/testthat/test-postmix.R | 31 tests/testthat/test-preddist.R | 119 +- tests/testthat/test-utils.R | 604 ++++++++----- vignettes/introduction.Rmd | 191 ++-- 125 files changed, 9066 insertions(+), 8021 deletions(-)
Title: Univariate Kernel Density Estimation
Description: Provides an efficient implementation of univariate local polynomial
kernel density estimators that can handle bounded and discrete data. See
Geenens (2014) <doi:10.48550/arXiv.1303.4121>,
Geenens and Wang (2018) <doi:10.48550/arXiv.1602.04862>,
Nagler (2018a) <doi:10.48550/arXiv.1704.07457>,
Nagler (2018b) <doi:10.48550/arXiv.1705.05431>.
Author: Thomas Nagler [aut, cre],
Thibault Vatter [aut]
Maintainer: Thomas Nagler <mail@tnagler.com>
Diff between kde1d versions 1.0.7 dated 2024-01-26 and 1.1.0 dated 2025-01-08
DESCRIPTION | 20 LICENSE | 4 MD5 | 49 +- NAMESPACE | 2 NEWS.md | 16 R/RcppExports.R | 17 R/kde1d-methods.R | 99 +++- R/kde1d-package.R | 12 R/kde1d.R | 48 +- R/tools.R | 43 - README.md | 24 - inst/include/kde1d-wrappers.hpp | 40 + inst/include/kde1d.hpp |only inst/include/kde1d/dpik.hpp | 82 +-- inst/include/kde1d/interpolation.hpp | 71 +-- inst/include/kde1d/kde1d.hpp | 756 +++++++++++++++++++++++++---------- inst/include/kde1d/kdefft.hpp | 28 - inst/include/kde1d/stats.hpp | 31 - inst/include/kde1d/tools.hpp | 25 - inst/include/kde1d/version.hpp |only man/kde1d-package.Rd | 24 - man/kde1d.Rd | 29 + man/plot.kde1d.Rd | 16 src/RcppExports.cpp | 14 src/kde1d-interface.cpp | 32 - tests/testthat/Rplots.pdf |only tests/testthat/test_kde1d.R | 41 + 27 files changed, 1021 insertions(+), 502 deletions(-)
Title: Kaplan-Meier Plot with 'ggplot2'
Description: The function 'jskm()' creates publication quality Kaplan-Meier plot with at risk tables below. 'svyjskm()' provides plot for weighted Kaplan-Meier estimator.
Author: Jinseob Kim [aut, cre] ,
yoonkyoung Chun [aut],
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jskm versions 0.5.6 dated 2024-10-23 and 0.5.8 dated 2025-01-08
DESCRIPTION | 8 - MD5 | 42 ++--- NEWS.md | 8 + R/jskm.R | 215 ++++++++++++++++-------------- R/svyjskm.R | 26 +++ build/vignette.rds |binary inst/doc/jskm.html | 167 +++++++++++++++++++++-- man/figures/README-unnamed-chunk-1-1.png |binary man/figures/README-unnamed-chunk-1-2.png |binary man/figures/README-unnamed-chunk-10-1.png |binary man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-3-2.png |binary man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-4-2.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-7-2.png |binary man/figures/README-unnamed-chunk-8-3.png |binary man/figures/README-unnamed-chunk-9-1.png |binary man/jskm.Rd | 6 man/svyjskm.Rd | 6 22 files changed, 340 insertions(+), 138 deletions(-)
Title: Miscellaneous Functions in C++
Description: Provides utility functions that are simply, frequently used,
but may require higher performance that what can be obtained from base R.
Incidentally provides support for 'reverse geocoding', such as matching a point
with its nearest neighbour in another array. Used as a complement to package
'hutils' by sacrificing compilation or installation time for higher running
speeds. The name is a portmanteau of the author and 'Rcpp'.
Author: Hugh Parsonage [aut, cre],
Simon Urbanek [ctb]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between hutilscpp versions 0.10.6 dated 2024-11-03 and 0.10.7 dated 2025-01-08
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 7 +++++++ src/Crange.c | 3 ++- src/character.c | 5 +---- 5 files changed, 17 insertions(+), 12 deletions(-)
Title: Quantitative Analysis of Textual Data
Description: A fast, flexible, and comprehensive framework for
quantitative text analysis in R. Provides functionality for corpus management,
creating and manipulating tokens and n-grams, exploring keywords in context,
forming and manipulating sparse matrices
of documents by features and feature co-occurrences, analyzing keywords, computing feature similarities and
distances, applying content dictionaries, applying supervised and unsupervised machine learning,
visually representing text and text analyses, and more.
Author: Kenneth Benoit [cre, aut, cph]
,
Kohei Watanabe [aut] ,
Haiyan Wang [aut] ,
Paul Nulty [aut] ,
Adam Obeng [aut] ,
Stefan Mueller [aut] ,
Akitaka Matsuo [aut] ,
William Lowe [aut] ,
Christian Mueller [ctb],
Olivier Delmarcelle [ctb] ,
European Research [...truncated...]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda versions 4.1.0 dated 2024-09-04 and 4.2.0 dated 2025-01-08
quanteda-4.1.0/quanteda/tests/testthat/test-wordstem.R |only quanteda-4.2.0/quanteda/DESCRIPTION | 6 quanteda-4.2.0/quanteda/MD5 | 175 +++++----- quanteda-4.2.0/quanteda/NAMESPACE | 2 quanteda-4.2.0/quanteda/NEWS.md | 17 quanteda-4.2.0/quanteda/R/RcppExports.R | 4 quanteda-4.2.0/quanteda/R/casechange-functions.R | 66 ++- quanteda-4.2.0/quanteda/R/dfm_compress.R | 24 - quanteda-4.2.0/quanteda/R/dfm_group.R | 24 - quanteda-4.2.0/quanteda/R/dfm_lookup.R | 30 - quanteda-4.2.0/quanteda/R/dfm_match.R | 17 quanteda-4.2.0/quanteda/R/dfm_replace.R | 11 quanteda-4.2.0/quanteda/R/dfm_sample.R | 18 - quanteda-4.2.0/quanteda/R/dfm_select.R | 13 quanteda-4.2.0/quanteda/R/dfm_subset.R | 29 - quanteda-4.2.0/quanteda/R/dfm_trim.R | 10 quanteda-4.2.0/quanteda/R/message.R | 10 quanteda-4.2.0/quanteda/R/nfunctions.R | 8 quanteda-4.2.0/quanteda/R/tokenizers.R | 5 quanteda-4.2.0/quanteda/R/tokens.R | 2 quanteda-4.2.0/quanteda/R/tokens_chunk.R | 26 + quanteda-4.2.0/quanteda/R/tokens_compound.R | 24 - quanteda-4.2.0/quanteda/R/tokens_group.R | 19 - quanteda-4.2.0/quanteda/R/tokens_lookup.R | 12 quanteda-4.2.0/quanteda/R/tokens_ngrams.R | 32 + quanteda-4.2.0/quanteda/R/tokens_replace.R | 18 - quanteda-4.2.0/quanteda/R/tokens_sample.R | 19 - quanteda-4.2.0/quanteda/R/tokens_segment.R | 32 + quanteda-4.2.0/quanteda/R/tokens_select.R | 10 quanteda-4.2.0/quanteda/R/tokens_split.R | 20 - quanteda-4.2.0/quanteda/R/tokens_xptr.R | 2 quanteda-4.2.0/quanteda/R/wordstem.R | 41 +- quanteda-4.2.0/quanteda/README.md | 65 +++ quanteda-4.2.0/quanteda/build/partial.rdb |binary quanteda-4.2.0/quanteda/build/vignette.rds |binary quanteda-4.2.0/quanteda/inst/doc/quickstart.R | 86 ++-- quanteda-4.2.0/quanteda/man/dfm_compress.Rd | 9 quanteda-4.2.0/quanteda/man/dfm_group.Rd | 11 quanteda-4.2.0/quanteda/man/dfm_lookup.Rd | 8 quanteda-4.2.0/quanteda/man/dfm_match.Rd | 5 quanteda-4.2.0/quanteda/man/dfm_replace.Rd | 3 quanteda-4.2.0/quanteda/man/dfm_sample.Rd | 12 quanteda-4.2.0/quanteda/man/dfm_subset.Rd | 13 quanteda-4.2.0/quanteda/man/dfm_tolower.Rd | 11 quanteda-4.2.0/quanteda/man/dfm_trim.Rd | 3 quanteda-4.2.0/quanteda/man/tokens_chunk.Rd | 11 quanteda-4.2.0/quanteda/man/tokens_compound.Rd | 8 quanteda-4.2.0/quanteda/man/tokens_group.Rd | 11 quanteda-4.2.0/quanteda/man/tokens_lookup.Rd | 3 quanteda-4.2.0/quanteda/man/tokens_ngrams.Rd | 19 - quanteda-4.2.0/quanteda/man/tokens_replace.Rd | 3 quanteda-4.2.0/quanteda/man/tokens_sample.Rd | 6 quanteda-4.2.0/quanteda/man/tokens_segment.Rd | 7 quanteda-4.2.0/quanteda/man/tokens_split.Rd | 6 quanteda-4.2.0/quanteda/man/tokens_trim.Rd | 3 quanteda-4.2.0/quanteda/man/tokens_wordstem.Rd | 21 - quanteda-4.2.0/quanteda/src/RcppExports.cpp | 12 quanteda-4.2.0/quanteda/src/serialize.cpp | 4 quanteda-4.2.0/quanteda/src/tokens_chunk.cpp | 10 quanteda-4.2.0/quanteda/src/tokens_combine.cpp | 33 + quanteda-4.2.0/quanteda/src/tokens_segment.cpp | 10 quanteda-4.2.0/quanteda/src/tokens_xptr.cpp | 25 + quanteda-4.2.0/quanteda/tests/testthat/test-casechanges.R | 29 + quanteda-4.2.0/quanteda/tests/testthat/test-default-methods.R | 8 quanteda-4.2.0/quanteda/tests/testthat/test-dfm_compress.R | 31 + quanteda-4.2.0/quanteda/tests/testthat/test-dfm_group.R | 16 quanteda-4.2.0/quanteda/tests/testthat/test-dfm_lookup.R | 74 +++- quanteda-4.2.0/quanteda/tests/testthat/test-dfm_match.R | 8 quanteda-4.2.0/quanteda/tests/testthat/test-dfm_replace.R | 9 quanteda-4.2.0/quanteda/tests/testthat/test-dfm_sample.R | 14 quanteda-4.2.0/quanteda/tests/testthat/test-dfm_select.R | 124 +++---- quanteda-4.2.0/quanteda/tests/testthat/test-dfm_subset.R | 17 quanteda-4.2.0/quanteda/tests/testthat/test-dfm_trim.R | 9 quanteda-4.2.0/quanteda/tests/testthat/test-dfm_wordstem.R |only quanteda-4.2.0/quanteda/tests/testthat/test-fcm_methods.R | 3 quanteda-4.2.0/quanteda/tests/testthat/test-nfunctions.R | 47 +- quanteda-4.2.0/quanteda/tests/testthat/test-tokens-word4.R | 22 - quanteda-4.2.0/quanteda/tests/testthat/test-tokens.R | 12 quanteda-4.2.0/quanteda/tests/testthat/test-tokens_chunk.R | 5 quanteda-4.2.0/quanteda/tests/testthat/test-tokens_compound.R | 16 quanteda-4.2.0/quanteda/tests/testthat/test-tokens_group.R | 5 quanteda-4.2.0/quanteda/tests/testthat/test-tokens_lookup.R | 5 quanteda-4.2.0/quanteda/tests/testthat/test-tokens_ngrams.R | 8 quanteda-4.2.0/quanteda/tests/testthat/test-tokens_replace.R | 5 quanteda-4.2.0/quanteda/tests/testthat/test-tokens_sample.R | 27 + quanteda-4.2.0/quanteda/tests/testthat/test-tokens_segment.R | 6 quanteda-4.2.0/quanteda/tests/testthat/test-tokens_select.R | 6 quanteda-4.2.0/quanteda/tests/testthat/test-tokens_split.R | 5 quanteda-4.2.0/quanteda/tests/testthat/test-tokens_subset.R | 3 quanteda-4.2.0/quanteda/tests/testthat/test-tokens_wordstem.R |only 90 files changed, 1154 insertions(+), 504 deletions(-)
Title: Fit Probabilistic Index Models
Description: Fit a probabilistic index model as described in
Thas et al, 2012: <doi:10.1111/j.1467-9868.2011.01020.x>. The interface to the
modeling function has changed in this new version. The old version is
still available at R-Forge.
Author: Joris Meys [aut, cre],
Jan De Neve [aut],
Nick Sabbe [aut],
Gustavo Guimaraes de Castro Amorim [aut]
Maintainer: Joris Meys <Joris.Meys@UGent.be>
Diff between pim versions 2.0.2 dated 2020-02-03 and 2.0.4 dated 2025-01-08
DESCRIPTION | 11 MD5 | 119 +++--- NAMESPACE | 2 NEWS |only R/Estimators.R | 8 R/Extract.pim.summary.R | 20 - R/InternalFunctions.R | 25 - R/confint.pim.R | 34 - R/new.pim.poset.R | 74 ++-- R/pim-package.R | 7 build/vignette.rds |binary inst/doc/pim.Rnw | 764 +++++++++++++++++++++---------------------- inst/doc/pim.pdf |binary man/CreateScoreFun.Rd | 60 +-- man/DysData.Rd | 42 +- man/EngelData.Rd | 34 - man/Extract.pim.summary.Rd | 97 +---- man/FEVData.Rd | 42 +- man/L.Rd | 118 +++--- man/MHData.Rd | 36 +- man/P.Rd | 86 ++-- man/SUData.Rd | 40 +- man/add.poset.Rd | 112 +++--- man/as.data.frame.Rd | 86 ++-- man/as.matrix.pim.summary.Rd | 58 +-- man/classes.Rd | 186 +++++----- man/coef.Rd | 68 +-- man/confint.pim.Rd | 60 +-- man/create.poset.Rd | 56 +-- man/estimators.Rd | 254 +++++++------- man/formula.Rd | 106 ++--- man/getters-pim.formula.Rd | 158 ++++---- man/has.intercept.Rd | 136 +++---- man/is.complete.Rd | 70 +-- man/make.posfun.Rd | 38 +- man/model.matrix.pim.Rd | 136 +++---- man/new.pim.Rd | 36 +- man/new.pim.env.Rd | 184 +++++----- man/new.pim.formula.Rd | 132 +++---- man/new.pim.poset.Rd | 230 ++++++------ man/nobs.Rd | 84 ++-- man/penv.Rd | 100 ++--- man/pim-class.Rd | 94 ++--- man/pim-getters.Rd | 82 ++-- man/pim-package.Rd | 54 +-- man/pim.Rd | 362 ++++++++++---------- man/pim.environment-class.Rd | 90 ++--- man/pim.fit.Rd | 140 +++---- man/pim.formula-class.Rd | 150 ++++---- man/pim.poset-class.Rd | 64 +-- man/pim.summary-class.Rd | 90 ++--- man/pimdata.Rd | 50 +- man/poset.Rd | 116 +++--- man/print.Rd | 94 ++--- man/response.Rd | 90 ++--- man/sandwich.estimator.Rd | 84 ++-- man/summary.pim.Rd | 66 +-- man/vcov.Rd | 68 +-- man/vcov.estimators.Rd | 110 +++--- man/vcov.internal.Rd | 66 +-- vignettes/pim.Rnw | 764 +++++++++++++++++++++---------------------- 61 files changed, 3263 insertions(+), 3280 deletions(-)
Title: Mixed Model ANOVA and Statistics for Education
Description: The main functions perform mixed models analysis by least squares
or REML by adding the function r() to formulas of lm() and glm(). A collection of
text-book statistics for higher education is also included, e.g. modifications
of the functions lm(), glm() and associated summaries from the package 'stats'.
Author: Kristian Hovde Liland [aut, cre],
Solve Saeboe¸ [ctb],
R-Core [ctb]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between mixlm versions 1.4.0 dated 2024-10-07 and 1.4.1 dated 2025-01-08
DESCRIPTION | 8 +- MD5 | 22 +++---- NAMESPACE | 2 NEWS | 10 +++ R/glm.R | 64 ++++++++++++++++++++-- R/lm.R | 141 +++++++++++++++++++++++++++++++++++++++----------- R/mixlm.R | 19 +++--- R/utilities.R | 44 +++++++++++++-- man/contr.weighted.Rd | 4 + man/effect.labels.Rd | 5 + man/glm.Rd | 9 +-- man/lm.Rd | 4 + 12 files changed, 258 insertions(+), 74 deletions(-)
Title: Client for 'LaminDB'
Description: Interact with 'LaminDB'. 'LaminDB' is an open-source data
framework for biology. This package allows you to query and download
data from 'LaminDB' instances.
Author: Robrecht Cannoodt [aut, cre] ,
Luke Zappia [aut] ,
Data Intuitive [aut],
Lamin Labs [aut, cph]
Maintainer: Robrecht Cannoodt <robrecht@data-intuitive.com>
Diff between laminr versions 0.3.0 dated 2024-12-02 and 0.3.1 dated 2025-01-08
DESCRIPTION | 14 +++---- MD5 | 38 +++++++++++-------- NAMESPACE | 3 + R/Artifact.R | 1 R/Instance.R | 19 ++++----- R/connect.R | 77 ++++++++++++++++++++++++++++++++++++++++ R/install.R |only R/settings_store.R | 7 +++ R/zzz.R |only README.md | 30 ++++++++++++--- inst/doc/architecture.html | 4 +- inst/doc/architecture.qmd | 4 +- inst/doc/development.html | 8 ++++ inst/doc/development.qmd | 8 ++++ man/Instance.Rd | 2 - man/install_lamindb.Rd |only man/lamin_connect.Rd |only man/lamin_login.Rd |only vignettes/architecture.qmd | 4 +- vignettes/concepts_features.Rmd | 6 +-- vignettes/development.qmd | 8 ++++ vignettes/laminr.Rmd | 14 ++++--- vignettes/setup.Rmd |only 23 files changed, 189 insertions(+), 58 deletions(-)
Title: Clustering of Sites with Species Data
Description: Clustering algorithm developed for use with plot inventories of species. It groups plots by subsets of diagnostic species rather than overall species composition. There is an unsupervised and a supervised mode, the latter accepting suggestions for species with greater weight and cluster medoids.
Author: Sebastian Schmidtlein [aut, cre]
,
Jason Collison [aut],
Robin Pfannendoerfer [aut],
Lubomir Tichy [ctb]
Maintainer: Sebastian Schmidtlein <schmidtlein@kit.edu>
Diff between isopam versions 3.0 dated 2024-11-10 and 3.1 dated 2025-01-08
DESCRIPTION | 6 +++--- MD5 | 6 ++++-- NAMESPACE | 1 + R/clusters.R |only man/clusters.Rd |only 5 files changed, 8 insertions(+), 5 deletions(-)
Title: 'HiGHS' Optimization Solver
Description: R interface to 'HiGHS', an optimization solver for solving mixed integer
optimization problems with quadratic or linear objective and linear constraints.
Author: Florian Schwendinger [aut, cre],
Dirk Schumacher [aut],
Julian Hall [cph],
Ivet Galabova [cph],
Leona Gottwald [cph],
Michael Feldmeier [cph]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between highs versions 0.1-10 dated 2023-05-16 and 1.9.0-1 dated 2025-01-08
highs-0.1-10/highs/inst/HiGHS/HConfig.h.bazel |only highs-0.1-10/highs/inst/HiGHS/LICENSE |only highs-0.1-10/highs/inst/HiGHS/MANIFEST.in |only highs-0.1-10/highs/inst/HiGHS/MODS.md |only highs-0.1-10/highs/inst/HiGHS/examples/build.BAZEL |only highs-0.1-10/highs/inst/HiGHS/examples/tests |only highs-0.1-10/highs/inst/HiGHS/extern/doctest.h |only highs-0.1-10/highs/inst/HiGHS/osi-highs.pc.in |only highs-0.1-10/highs/inst/HiGHS/src/lp_data/HighsRuntimeOptions.h |only highs-0.1-10/highs/inst/HiGHS/src/qpsolver/feasibility.hpp |only highs-0.1-10/highs/inst/HiGHS/src/qpsolver/feasibility_quass.hpp |only highs-0.1-10/highs/inst/HiGHS/src/qpsolver/result.hpp |only highs-0.1-10/highs/inst/HiGHS/src/qpsolver/vector.hpp |only highs-1.9.0-1/highs/DESCRIPTION | 10 highs-1.9.0-1/highs/MD5 | 775 highs-1.9.0-1/highs/NEWS.md |only highs-1.9.0-1/highs/R/api.R |only highs-1.9.0-1/highs/R/highs.R | 89 highs-1.9.0-1/highs/R/model.R |only highs-1.9.0-1/highs/R/smat.R | 2 highs-1.9.0-1/highs/configure | 1 highs-1.9.0-1/highs/inst/HiGHS/CMakeLists.txt | 986 highs-1.9.0-1/highs/inst/HiGHS/CONTRIBUTING.md | 4 highs-1.9.0-1/highs/inst/HiGHS/FEATURES.md |only highs-1.9.0-1/highs/inst/HiGHS/LICENSE.txt |only highs-1.9.0-1/highs/inst/HiGHS/MODULE.bazel |only highs-1.9.0-1/highs/inst/HiGHS/README.md | 363 highs-1.9.0-1/highs/inst/HiGHS/Version.txt |only highs-1.9.0-1/highs/inst/HiGHS/WORKSPACE | 12 highs-1.9.0-1/highs/inst/HiGHS/app/CMakeLists.txt | 93 highs-1.9.0-1/highs/inst/HiGHS/app/HighsRuntimeOptions.h |only highs-1.9.0-1/highs/inst/HiGHS/app/RunHighs.cpp | 47 highs-1.9.0-1/highs/inst/HiGHS/app/cxxopts.hpp | 3339 - highs-1.9.0-1/highs/inst/HiGHS/cmake |only highs-1.9.0-1/highs/inst/HiGHS/docs/HiGHS_CopyrightHeader.pl | 9 highs-1.9.0-1/highs/inst/HiGHS/docs/Project.toml |only highs-1.9.0-1/highs/inst/HiGHS/docs/README.md |only highs-1.9.0-1/highs/inst/HiGHS/docs/c_api_gen |only highs-1.9.0-1/highs/inst/HiGHS/docs/make.jl |only highs-1.9.0-1/highs/inst/HiGHS/docs/src |only highs-1.9.0-1/highs/inst/HiGHS/examples/CMakeLists.txt |only highs-1.9.0-1/highs/inst/HiGHS/examples/Docs.py |only highs-1.9.0-1/highs/inst/HiGHS/examples/branch-and-price.py |only highs-1.9.0-1/highs/inst/HiGHS/examples/call_highs_from_c.c | 438 highs-1.9.0-1/highs/inst/HiGHS/examples/call_highs_from_c_minimal.c |only highs-1.9.0-1/highs/inst/HiGHS/examples/call_highs_from_cpp.cpp | 44 highs-1.9.0-1/highs/inst/HiGHS/examples/call_highs_from_csharp.cs | 58 highs-1.9.0-1/highs/inst/HiGHS/examples/call_highs_from_fortran.f90 | 68 highs-1.9.0-1/highs/inst/HiGHS/examples/call_highs_from_python.py | 464 highs-1.9.0-1/highs/inst/HiGHS/examples/call_highs_from_python_highspy.py |only highs-1.9.0-1/highs/inst/HiGHS/examples/call_highs_from_python_mps.py |only highs-1.9.0-1/highs/inst/HiGHS/examples/chip.py |only highs-1.9.0-1/highs/inst/HiGHS/examples/distillation.py |only highs-1.9.0-1/highs/inst/HiGHS/examples/knapsack.py |only highs-1.9.0-1/highs/inst/HiGHS/examples/minimal.py | 23 highs-1.9.0-1/highs/inst/HiGHS/examples/network_flow.py |only highs-1.9.0-1/highs/inst/HiGHS/examples/nqueens.py |only highs-1.9.0-1/highs/inst/HiGHS/examples/plot_highs_log.py |only highs-1.9.0-1/highs/inst/HiGHS/extern/catch.hpp |28131 +++++----- highs-1.9.0-1/highs/inst/HiGHS/extern/filereaderlp/builder.hpp | 25 highs-1.9.0-1/highs/inst/HiGHS/extern/filereaderlp/def.hpp | 6 highs-1.9.0-1/highs/inst/HiGHS/extern/filereaderlp/model.hpp | 67 highs-1.9.0-1/highs/inst/HiGHS/extern/filereaderlp/reader.cpp | 2165 highs-1.9.0-1/highs/inst/HiGHS/extern/zstr/strict_fstream.hpp | 4 highs-1.9.0-1/highs/inst/HiGHS/extern/zstr/zstr.hpp | 921 highs-1.9.0-1/highs/inst/HiGHS/flake.lock |only highs-1.9.0-1/highs/inst/HiGHS/flake.nix |only highs-1.9.0-1/highs/inst/HiGHS/highs-config.cmake.in | 10 highs-1.9.0-1/highs/inst/HiGHS/highs.pc.in | 4 highs-1.9.0-1/highs/inst/HiGHS/meson.build |only highs-1.9.0-1/highs/inst/HiGHS/meson_options.txt |only highs-1.9.0-1/highs/inst/HiGHS/nuget |only highs-1.9.0-1/highs/inst/HiGHS/pyproject.toml |only highs-1.9.0-1/highs/inst/HiGHS/src/CMakeLists.txt | 1088 highs-1.9.0-1/highs/inst/HiGHS/src/HConfig.h.bazel.in |only highs-1.9.0-1/highs/inst/HiGHS/src/HConfig.h.in | 8 highs-1.9.0-1/highs/inst/HiGHS/src/HConfig.h.meson.in |only highs-1.9.0-1/highs/inst/HiGHS/src/Highs.h | 527 highs-1.9.0-1/highs/inst/HiGHS/src/highs_bindings.cpp |only highs-1.9.0-1/highs/inst/HiGHS/src/highspy |only highs-1.9.0-1/highs/inst/HiGHS/src/interfaces |only highs-1.9.0-1/highs/inst/HiGHS/src/io/Filereader.cpp | 35 highs-1.9.0-1/highs/inst/HiGHS/src/io/Filereader.h | 6 highs-1.9.0-1/highs/inst/HiGHS/src/io/FilereaderEms.cpp | 10 highs-1.9.0-1/highs/inst/HiGHS/src/io/FilereaderEms.h | 6 highs-1.9.0-1/highs/inst/HiGHS/src/io/FilereaderLp.cpp | 65 highs-1.9.0-1/highs/inst/HiGHS/src/io/FilereaderLp.h | 6 highs-1.9.0-1/highs/inst/HiGHS/src/io/FilereaderMps.cpp | 9 highs-1.9.0-1/highs/inst/HiGHS/src/io/FilereaderMps.h | 6 highs-1.9.0-1/highs/inst/HiGHS/src/io/HMPSIO.cpp | 185 highs-1.9.0-1/highs/inst/HiGHS/src/io/HMPSIO.h | 6 highs-1.9.0-1/highs/inst/HiGHS/src/io/HMpsFF.cpp | 474 highs-1.9.0-1/highs/inst/HiGHS/src/io/HMpsFF.h | 18 highs-1.9.0-1/highs/inst/HiGHS/src/io/HighsIO.cpp | 218 highs-1.9.0-1/highs/inst/HiGHS/src/io/HighsIO.h | 52 highs-1.9.0-1/highs/inst/HiGHS/src/io/LoadOptions.cpp | 33 highs-1.9.0-1/highs/inst/HiGHS/src/io/LoadOptions.h | 13 highs-1.9.0-1/highs/inst/HiGHS/src/ipm/IpxSolution.h | 6 highs-1.9.0-1/highs/inst/HiGHS/src/ipm/IpxWrapper.cpp | 386 highs-1.9.0-1/highs/inst/HiGHS/src/ipm/IpxWrapper.h | 9 highs-1.9.0-1/highs/inst/HiGHS/src/ipm/basiclu/basiclu_factorize.c | 2 highs-1.9.0-1/highs/inst/HiGHS/src/ipm/basiclu/lu_build_factors.c | 4 highs-1.9.0-1/highs/inst/HiGHS/src/ipm/basiclu/lu_garbage_perm.c | 4 highs-1.9.0-1/highs/inst/HiGHS/src/ipm/basiclu/lu_markowitz.c | 2 highs-1.9.0-1/highs/inst/HiGHS/src/ipm/basiclu/lu_pivot.c | 21 highs-1.9.0-1/highs/inst/HiGHS/src/ipm/basiclu/lu_setup_bump.c | 2 highs-1.9.0-1/highs/inst/HiGHS/src/ipm/basiclu/lu_singletons.c | 3 highs-1.9.0-1/highs/inst/HiGHS/src/ipm/basiclu/lu_solve_for_update.c | 1 highs-1.9.0-1/highs/inst/HiGHS/src/ipm/basiclu/lu_solve_sparse.c | 1 highs-1.9.0-1/highs/inst/HiGHS/src/ipm/basiclu/lu_update.c | 18 highs-1.9.0-1/highs/inst/HiGHS/src/ipm/ipx/basiclu_kernel.cc | 2 highs-1.9.0-1/highs/inst/HiGHS/src/ipm/ipx/basiclu_wrapper.cc | 23 highs-1.9.0-1/highs/inst/HiGHS/src/ipm/ipx/basis.cc | 23 highs-1.9.0-1/highs/inst/HiGHS/src/ipm/ipx/conjugate_residuals.h | 7 highs-1.9.0-1/highs/inst/HiGHS/src/ipm/ipx/control.cc | 60 highs-1.9.0-1/highs/inst/HiGHS/src/ipm/ipx/control.h | 30 highs-1.9.0-1/highs/inst/HiGHS/src/ipm/ipx/crossover.cc | 57 highs-1.9.0-1/highs/inst/HiGHS/src/ipm/ipx/crossover.h | 2 highs-1.9.0-1/highs/inst/HiGHS/src/ipm/ipx/diagonal_precond.cc | 4 highs-1.9.0-1/highs/inst/HiGHS/src/ipm/ipx/forrest_tomlin.cc | 4 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highs-1.9.0-1/highs/inst/HiGHS/src/qpsolver/ratiotest.hpp | 6 highs-1.9.0-1/highs/inst/HiGHS/src/qpsolver/reducedcosts.hpp | 18 highs-1.9.0-1/highs/inst/HiGHS/src/qpsolver/reducedgradient.hpp | 24 highs-1.9.0-1/highs/inst/HiGHS/src/qpsolver/runtime.hpp | 44 highs-1.9.0-1/highs/inst/HiGHS/src/qpsolver/scaling.cpp | 9 highs-1.9.0-1/highs/inst/HiGHS/src/qpsolver/settings.hpp | 55 highs-1.9.0-1/highs/inst/HiGHS/src/qpsolver/steepestedgepricing.hpp | 133 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HApp.h | 117 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HEkk.cpp | 280 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HEkk.h | 108 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HEkkControl.cpp | 6 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HEkkDebug.cpp | 14 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HEkkDual.cpp | 188 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HEkkDual.h | 9 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HEkkDualMulti.cpp | 32 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HEkkDualRHS.cpp | 43 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HEkkDualRHS.h | 22 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HEkkDualRow.cpp | 75 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HEkkDualRow.h | 8 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HEkkInterface.cpp | 6 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HEkkPrimal.cpp | 171 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HEkkPrimal.h | 11 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HSimplex.cpp | 21 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HSimplex.h | 8 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HSimplexDebug.cpp | 6 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HSimplexDebug.h | 6 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HSimplexNla.cpp | 28 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HSimplexNla.h | 6 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HSimplexNlaDebug.cpp | 13 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HSimplexNlaFreeze.cpp | 6 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HSimplexNlaProductForm.cpp | 6 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HSimplexReport.cpp | 39 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HSimplexReport.h | 8 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HighsSimplexAnalysis.cpp | 26 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/HighsSimplexAnalysis.h | 334 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/SimplexConst.h | 26 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/SimplexStruct.h | 18 highs-1.9.0-1/highs/inst/HiGHS/src/simplex/SimplexTimer.h | 6 highs-1.9.0-1/highs/inst/HiGHS/src/test/DevKkt.cpp | 8 highs-1.9.0-1/highs/inst/HiGHS/src/test/DevKkt.h | 6 highs-1.9.0-1/highs/inst/HiGHS/src/test/KktCh2.cpp | 10 highs-1.9.0-1/highs/inst/HiGHS/src/test/KktCh2.h | 6 highs-1.9.0-1/highs/inst/HiGHS/src/util/FactorTimer.h | 6 highs-1.9.0-1/highs/inst/HiGHS/src/util/HFactor.cpp | 237 highs-1.9.0-1/highs/inst/HiGHS/src/util/HFactor.h | 48 highs-1.9.0-1/highs/inst/HiGHS/src/util/HFactorConst.h | 6 highs-1.9.0-1/highs/inst/HiGHS/src/util/HFactorDebug.cpp | 15 highs-1.9.0-1/highs/inst/HiGHS/src/util/HFactorDebug.h | 6 highs-1.9.0-1/highs/inst/HiGHS/src/util/HFactorExtend.cpp | 6 highs-1.9.0-1/highs/inst/HiGHS/src/util/HFactorRefactor.cpp | 8 highs-1.9.0-1/highs/inst/HiGHS/src/util/HFactorUtils.cpp | 6 highs-1.9.0-1/highs/inst/HiGHS/src/util/HSet.cpp | 6 highs-1.9.0-1/highs/inst/HiGHS/src/util/HSet.h | 8 highs-1.9.0-1/highs/inst/HiGHS/src/util/HVector.h | 6 highs-1.9.0-1/highs/inst/HiGHS/src/util/HVectorBase.cpp | 6 highs-1.9.0-1/highs/inst/HiGHS/src/util/HVectorBase.h | 8 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsCDouble.h | 22 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsComponent.h | 6 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsDataStack.h | 16 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsDisjointSets.h | 6 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsHash.cpp | 6 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsHash.h | 75 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsHashTree.h | 149 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsInt.h | 6 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsIntegers.h | 21 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsLinearSumBounds.cpp | 6 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsLinearSumBounds.h | 6 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsMatrixPic.cpp | 6 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsMatrixPic.h | 6 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsMatrixSlice.h | 25 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsMatrixUtils.cpp | 32 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsMatrixUtils.h | 6 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsMemoryAllocation.h |only highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsRandom.h | 52 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsRbTree.h | 8 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsSort.cpp | 14 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsSort.h | 18 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsSparseMatrix.cpp | 262 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsSparseMatrix.h | 29 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsSparseVectorSum.h | 8 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsSplay.h | 6 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsTimer.h | 112 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsUtils.cpp | 139 highs-1.9.0-1/highs/inst/HiGHS/src/util/HighsUtils.h | 49 highs-1.9.0-1/highs/inst/HiGHS/src/util/stringutil.cpp | 56 highs-1.9.0-1/highs/inst/HiGHS/src/util/stringutil.h | 35 highs-1.9.0-1/highs/inst/HiGHS/subprojects |only highs-1.9.0-1/highs/inst/HiGHS/tests |only highs-1.9.0-1/highs/inst/HiGHS/version.rc.in |only highs-1.9.0-1/highs/inst/build_highs.sh | 12 highs-1.9.0-1/highs/man/hapi_new_model.Rd |only highs-1.9.0-1/highs/man/highs_model.Rd | 8 highs-1.9.0-1/highs/man/highs_solve.Rd | 8 highs-1.9.0-1/highs/src/highs_interface.cpp | 8 382 files changed, 39487 insertions(+), 27207 deletions(-)
Title: Make 'ggplot2' Graphics Interactive
Description: Create interactive 'ggplot2' graphics using 'htmlwidgets'.
Author: David Gohel [aut, cre],
Panagiotis Skintzos [aut],
Mike Bostock [cph] ,
Speros Kokenes [cph] ,
Eric Shull [cph] ,
Lee Thomason [cph] ,
Vladimir Agafonkin [cph] ,
Eric Book [ctb]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between ggiraph versions 0.8.11 dated 2024-11-19 and 0.8.12 dated 2025-01-08
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/interactive.cpp | 14 ++++++++++++-- 3 files changed, 17 insertions(+), 7 deletions(-)
Title: Block Structure Detection Using Singular Vectors
Description: Performs block diagonal covariance matrix detection using singular vectors (BD-SVD), which can be extended to hierarchical variable clustering (HC-SVD). The methods are described in Bauer (2024) <doi:10.1080/10618600.2024.2422985> and Bauer (202X) <doi:10.48550/arXiv.2308.06820>.
Author: Jan O. Bauer [aut, cre] ,
Ron Holzapfel [aut]
Maintainer: Jan O. Bauer <j.bauer@vu.nl>
Diff between bdsvd versions 0.2.0 dated 2024-07-06 and 0.2.1 dated 2025-01-08
DESCRIPTION | 8 MD5 | 26 +-- NAMESPACE | 1 R/bdsvd.R | 72 ++++---- R/hcsvd.R | 372 ++++++++++++++++++++++++++++---------------- man/bdsvd.Rd | 19 +- man/bdsvd.cov.sim.Rd | 4 man/bdsvd.ht.Rd | 14 - man/bdsvd.structure.Rd | 10 - man/detect.blocks.Rd | 10 - man/hcsvd.Rd | 65 ++++--- man/hcsvd.cor.sim.Rd | 6 man/single.bdsvd.Rd | 10 - tests/testthat/test-hcsvd.R | 55 ++---- 14 files changed, 395 insertions(+), 277 deletions(-)
Title: Exploratory Data Analysis for the 'spatstat' Family
Description: Functionality for exploratory data analysis and nonparametric analysis of
spatial data, mainly spatial point patterns,
in the 'spatstat' family of packages.
(Excludes analysis of spatial data on a linear network,
which is covered by the separate package 'spatstat.linnet'.)
Methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported.
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb],
Warick Brown [cph],
Achmad Choiruddin [ctb],
Jean-Francois Coeurjolly [ctb],
Ottmar Cronie [ctb],
Tilman Davies [ctb, cph],
Julian Gi [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.explore versions 3.3-3 dated 2024-10-22 and 3.3-4 dated 2025-01-08
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 11 +++++++++++ R/scriptUtils.R | 8 ++++++-- inst/doc/packagesizes.txt | 1 + inst/info/packagesizes.txt | 1 + man/reload.or.compute.Rd | 42 +++++++++++++++++++++++++++++------------- 7 files changed, 58 insertions(+), 25 deletions(-)
More information about spatstat.explore at CRAN
Permanent link
Title: 'Rcpp' Interface for Querying System Configuration Variables
Description: The 'getconf' command-line tool provided by 'libc' allows
querying of a large number of system variables. This package provides
similar functionality.
Author: Dirk Eddelbuettel [aut, cre]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppGetconf versions 0.0.3 dated 2018-11-16 and 0.0.4 dated 2025-01-08
ChangeLog | 60 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 19 ++++++++++-------- MD5 | 14 ++++++------- NAMESPACE | 2 - README.md | 54 ++++++++++++++++++++++++++++++++++++++++++++++++----- cleanup | 2 - configure | 2 - inst/NEWS.Rd | 11 ++++++++++ 8 files changed, 141 insertions(+), 23 deletions(-)
Title: Extensible Data Pattern Searching Framework
Description: Extensible framework for
subgroup discovery (Atzmueller (2015) <doi:10.1002/widm.1144>),
contrast patterns (Chen (2022) <doi:10.48550/arXiv.2209.13556>),
emerging patterns (Dong (1999) <doi:10.1145/312129.312191>),
association rules (Agrawal (1994) <https://www.vldb.org/conf/1994/P487.PDF>) and
conditional correlations (Hájek (1978) <doi:10.1007/978-3-642-66943-9>).
Both crisp (Boolean, binary) and fuzzy data are supported.
It generates conditions in the form of elementary conjunctions, evaluates
them on a dataset and checks the induced sub-data for interesting statistical
properties. A user-defined function may be defined to evaluate on each generated
condition to search for custom patterns.
Author: Michal Burda [aut, cre]
Maintainer: Michal Burda <michal.burda@osu.cz>
Diff between nuggets versions 1.3.0 dated 2024-11-13 and 1.4.0 dated 2025-01-08
nuggets-1.3.0/nuggets/src/dig/TaskQueue.h |only nuggets-1.3.0/nuggets/src/test-dig-TaskQueue.cpp |only nuggets-1.3.0/nuggets/tests/testthat/test-dig_implications.R |only nuggets-1.4.0/nuggets/DESCRIPTION | 18 nuggets-1.4.0/nuggets/MD5 | 163 +-- nuggets-1.4.0/nuggets/NAMESPACE | 12 nuggets-1.4.0/nuggets/NEWS.md | 22 nuggets-1.4.0/nuggets/R/convert_data_to_list.R | 24 nuggets-1.4.0/nuggets/R/dichotomize.R | 13 nuggets-1.4.0/nuggets/R/dig.R | 343 +++++- nuggets-1.4.0/nuggets/R/dig_associations.R |only nuggets-1.4.0/nuggets/R/dig_baseline_contrasts.R |only nuggets-1.4.0/nuggets/R/dig_complement_contrasts.R |only nuggets-1.4.0/nuggets/R/dig_contrasts.R | 221 ++-- nuggets-1.4.0/nuggets/R/dig_correlations.R | 94 + nuggets-1.4.0/nuggets/R/dig_grid.R | 333 ++++-- nuggets-1.4.0/nuggets/R/dig_implications.R | 176 --- nuggets-1.4.0/nuggets/R/dig_paired_baseline_contrasts.R |only nuggets-1.4.0/nuggets/R/extract_cols.R | 64 - nuggets-1.4.0/nuggets/R/format_condition.R | 10 nuggets-1.4.0/nuggets/R/is_degree.R | 10 nuggets-1.4.0/nuggets/R/is_subset.R | 8 nuggets-1.4.0/nuggets/R/msg.R |only nuggets-1.4.0/nuggets/R/nuggets-package.R | 7 nuggets-1.4.0/nuggets/R/partition.R | 96 + nuggets-1.4.0/nuggets/R/quietly.R |only nuggets-1.4.0/nuggets/R/t_test.R |only nuggets-1.4.0/nuggets/R/testers.R | 141 +- nuggets-1.4.0/nuggets/R/var_grid.R | 189 ++- nuggets-1.4.0/nuggets/R/var_names.R |only nuggets-1.4.0/nuggets/R/var_test.R |only nuggets-1.4.0/nuggets/R/wilcox_test.R |only nuggets-1.4.0/nuggets/README.md | 516 ---------- nuggets-1.4.0/nuggets/build/partial.rdb |binary nuggets-1.4.0/nuggets/build/vignette.rds |only nuggets-1.4.0/nuggets/inst/doc |only nuggets-1.4.0/nuggets/man/dichotomize.Rd | 13 nuggets-1.4.0/nuggets/man/dig.Rd | 192 +++ nuggets-1.4.0/nuggets/man/dig_associations.Rd |only nuggets-1.4.0/nuggets/man/dig_baseline_contrasts.Rd |only nuggets-1.4.0/nuggets/man/dig_complement_contrasts.Rd |only nuggets-1.4.0/nuggets/man/dig_contrasts.Rd | 85 + nuggets-1.4.0/nuggets/man/dig_correlations.Rd | 69 + nuggets-1.4.0/nuggets/man/dig_grid.Rd | 148 ++ nuggets-1.4.0/nuggets/man/dig_implications.Rd | 42 nuggets-1.4.0/nuggets/man/dig_paired_baseline_contrasts.Rd |only nuggets-1.4.0/nuggets/man/figures |only nuggets-1.4.0/nuggets/man/format_condition.Rd | 10 nuggets-1.4.0/nuggets/man/is_degree.Rd | 11 nuggets-1.4.0/nuggets/man/is_subset.Rd | 4 nuggets-1.4.0/nuggets/man/nuggets-package.Rd | 9 nuggets-1.4.0/nuggets/man/partition.Rd | 45 nuggets-1.4.0/nuggets/man/var_grid.Rd | 76 + nuggets-1.4.0/nuggets/man/var_names.Rd |only nuggets-1.4.0/nuggets/src/AlignedAllocator.h | 42 nuggets-1.4.0/nuggets/src/Makevars | 2 nuggets-1.4.0/nuggets/src/common.h | 7 nuggets-1.4.0/nuggets/src/dig/ArgumentValue.h | 39 nuggets-1.4.0/nuggets/src/dig/Config.h | 35 nuggets-1.4.0/nuggets/src/dig/ContiNnArgumentator.h | 2 nuggets-1.4.0/nuggets/src/dig/ContiNpArgumentator.h | 2 nuggets-1.4.0/nuggets/src/dig/ContiPnArgumentator.h | 2 nuggets-1.4.0/nuggets/src/dig/ContiPpArgumentator.h | 2 nuggets-1.4.0/nuggets/src/dig/Data.h | 14 nuggets-1.4.0/nuggets/src/dig/Digger.h | 128 +- nuggets-1.4.0/nuggets/src/dig/EmptyFociFilter.h | 6 nuggets-1.4.0/nuggets/src/dig/Executor.h | 50 nuggets-1.4.0/nuggets/src/dig/Filter.h | 7 nuggets-1.4.0/nuggets/src/dig/FociSupportsArgumentator.h | 2 nuggets-1.4.0/nuggets/src/dig/Iterator.h | 41 nuggets-1.4.0/nuggets/src/dig/MaxSupportFilter.h |only nuggets-1.4.0/nuggets/src/dig/MinConditionalFocusSupportFilter.h |only nuggets-1.4.0/nuggets/src/dig/MinLengthFilter.h | 2 nuggets-1.4.0/nuggets/src/dig/MinSupportFilter.h | 4 nuggets-1.4.0/nuggets/src/dig/TaskSequence.h |only nuggets-1.4.0/nuggets/src/test-dig-Task.cpp | 2 nuggets-1.4.0/nuggets/src/test-dig-TaskSequence.cpp |only nuggets-1.4.0/nuggets/tests/testthat/test-convert_data_to_list.R |only nuggets-1.4.0/nuggets/tests/testthat/test-dichotomize.R | 4 nuggets-1.4.0/nuggets/tests/testthat/test-dig.R | 180 ++- nuggets-1.4.0/nuggets/tests/testthat/test-dig_associations.R |only nuggets-1.4.0/nuggets/tests/testthat/test-dig_baseline_contrasts.R |only nuggets-1.4.0/nuggets/tests/testthat/test-dig_complement_contrasts.R |only nuggets-1.4.0/nuggets/tests/testthat/test-dig_correlations.R | 31 nuggets-1.4.0/nuggets/tests/testthat/test-dig_grid.R | 352 ++++++ nuggets-1.4.0/nuggets/tests/testthat/test-dig_paired_baseline_contrasts.R |only nuggets-1.4.0/nuggets/tests/testthat/test-extract_cols.R |only nuggets-1.4.0/nuggets/tests/testthat/test-format_condition.R | 3 nuggets-1.4.0/nuggets/tests/testthat/test-is_degree.R | 1 nuggets-1.4.0/nuggets/tests/testthat/test-is_subset.R | 14 nuggets-1.4.0/nuggets/tests/testthat/test-partition.R | 130 ++ nuggets-1.4.0/nuggets/tests/testthat/test-quietly.R |only nuggets-1.4.0/nuggets/tests/testthat/test-t_test.R |only nuggets-1.4.0/nuggets/tests/testthat/test-testers.R |only nuggets-1.4.0/nuggets/tests/testthat/test-var_grid.R | 66 + nuggets-1.4.0/nuggets/tests/testthat/test-var_names.R |only nuggets-1.4.0/nuggets/tests/testthat/test-var_test.R |only nuggets-1.4.0/nuggets/tests/testthat/test-wilcox_test.R |only nuggets-1.4.0/nuggets/vignettes |only 99 files changed, 2885 insertions(+), 1449 deletions(-)
Title: Continuous Time Mediation
Description: Calculates standard errors and confidence intervals for effects in continuous-time mediation models. This package extends the work of
Deboeck and Preacher (2015) <doi:10.1080/10705511.2014.973960> and
Ryan and Hamaker (2021) <doi:10.1007/s11336-021-09767-0>
by providing methods to generate standard errors and confidence intervals for the total, direct, and indirect effects in these models.
Author: Ivan Jacob Agaloos Pesigan [aut, cre, cph]
Maintainer: Ivan Jacob Agaloos Pesigan <r.jeksterslab@gmail.com>
Diff between cTMed versions 1.0.3 dated 2024-12-16 and 1.0.4 dated 2025-01-08
cTMed-1.0.3/cTMed/tests/testthat/test-delta-beta-std.R |only cTMed-1.0.3/cTMed/tests/testthat/test-delta-beta.R |only cTMed-1.0.3/cTMed/tests/testthat/test-delta-indirect-central.R |only cTMed-1.0.3/cTMed/tests/testthat/test-delta-med-std.R |only cTMed-1.0.3/cTMed/tests/testthat/test-delta-med.R |only cTMed-1.0.3/cTMed/tests/testthat/test-delta-total-central.R |only cTMed-1.0.3/cTMed/tests/testthat/test-direct-std.R |only cTMed-1.0.3/cTMed/tests/testthat/test-direct.R |only cTMed-1.0.3/cTMed/tests/testthat/test-indirect-central.R |only cTMed-1.0.3/cTMed/tests/testthat/test-indirect-std.R |only cTMed-1.0.3/cTMed/tests/testthat/test-indirect.R |only cTMed-1.0.3/cTMed/tests/testthat/test-mc-beta-std.R |only cTMed-1.0.3/cTMed/tests/testthat/test-mc-beta.R |only cTMed-1.0.3/cTMed/tests/testthat/test-mc-indirect-central.R |only cTMed-1.0.3/cTMed/tests/testthat/test-mc-med-std.R |only cTMed-1.0.3/cTMed/tests/testthat/test-mc-med.R |only cTMed-1.0.3/cTMed/tests/testthat/test-mc-phi.R |only cTMed-1.0.3/cTMed/tests/testthat/test-mc-total-central.R |only cTMed-1.0.3/cTMed/tests/testthat/test-posterior-beta.R |only cTMed-1.0.3/cTMed/tests/testthat/test-posterior-indirect-central.R |only cTMed-1.0.3/cTMed/tests/testthat/test-posterior-med.R |only cTMed-1.0.3/cTMed/tests/testthat/test-posterior-total-central.R |only cTMed-1.0.3/cTMed/tests/testthat/test-test-stable.R |only cTMed-1.0.3/cTMed/tests/testthat/test-total-central.R |only cTMed-1.0.3/cTMed/tests/testthat/test-total-std.R |only cTMed-1.0.3/cTMed/tests/testthat/test-total.R |only cTMed-1.0.3/cTMed/tests/testthat/test-trajectory.R |only cTMed-1.0.3/cTMed/tests/testthat/test-wald-ci-wald-ci-dot.R |only cTMed-1.0.3/cTMed/tests/testthat/test-wald-probs-of-alpha-dot.R |only cTMed-1.0.4/cTMed/DESCRIPTION | 6 cTMed-1.0.4/cTMed/MD5 | 168 +++--- cTMed-1.0.4/cTMed/NAMESPACE | 8 cTMed-1.0.4/cTMed/NEWS.md | 6 cTMed-1.0.4/cTMed/R/cTMed-boot-beta-dot.R |only cTMed-1.0.4/cTMed/R/cTMed-boot-beta-std-dot.R |only cTMed-1.0.4/cTMed/R/cTMed-boot-beta-std.R |only cTMed-1.0.4/cTMed/R/cTMed-boot-beta.R |only cTMed-1.0.4/cTMed/R/cTMed-boot-ci-dot.R |only cTMed-1.0.4/cTMed/R/cTMed-boot-med-dot.R |only cTMed-1.0.4/cTMed/R/cTMed-boot-med-std-dot.R |only cTMed-1.0.4/cTMed/R/cTMed-boot-med-std.R |only cTMed-1.0.4/cTMed/R/cTMed-boot-med.R |only cTMed-1.0.4/cTMed/R/cTMed-delta-beta-std.R | 10 cTMed-1.0.4/cTMed/R/cTMed-delta-beta.R | 44 + cTMed-1.0.4/cTMed/R/cTMed-delta-indirect-central.R | 47 + cTMed-1.0.4/cTMed/R/cTMed-delta-med-std.R | 60 +- cTMed-1.0.4/cTMed/R/cTMed-delta-med.R | 53 +- cTMed-1.0.4/cTMed/R/cTMed-delta-total-central.R | 47 + cTMed-1.0.4/cTMed/R/cTMed-direct-std.R | 2 cTMed-1.0.4/cTMed/R/cTMed-indirect-std.R | 2 cTMed-1.0.4/cTMed/R/cTMed-mc-beta-dot.R | 150 ++++-- cTMed-1.0.4/cTMed/R/cTMed-mc-beta-std-dot.R | 182 +++++-- cTMed-1.0.4/cTMed/R/cTMed-mc-beta-std.R | 5 cTMed-1.0.4/cTMed/R/cTMed-mc-beta.R | 4 cTMed-1.0.4/cTMed/R/cTMed-mc-central-dot.R | 182 +++++-- cTMed-1.0.4/cTMed/R/cTMed-mc-med-dot.R | 198 +++++--- cTMed-1.0.4/cTMed/R/cTMed-mc-med-std-dot.R | 247 ++++++---- cTMed-1.0.4/cTMed/R/cTMed-mc-med-std.R | 4 cTMed-1.0.4/cTMed/R/cTMed-mc-phi.R | 68 +- cTMed-1.0.4/cTMed/R/cTMed-med-std.R | 3 cTMed-1.0.4/cTMed/R/cTMed-methods-ctmedboot.R |only cTMed-1.0.4/cTMed/R/cTMed-methods-ctmedmc.R | 4 cTMed-1.0.4/cTMed/R/cTMed-posterior-beta-dot.R | 104 ++-- cTMed-1.0.4/cTMed/R/cTMed-posterior-central-dot.R | 127 +++-- cTMed-1.0.4/cTMed/R/cTMed-posterior-med-dot.R | 131 +++-- cTMed-1.0.4/cTMed/R/cTMed-total-std.R | 2 cTMed-1.0.4/cTMed/R/methods.R | 138 ++++- cTMed-1.0.4/cTMed/R/nBootstrap-bc-ci-dot.R |only cTMed-1.0.4/cTMed/R/nBootstrap-bc-probs-dot.R |only cTMed-1.0.4/cTMed/R/nBootstrap-z0-dot.R |only cTMed-1.0.4/cTMed/R/nBootstrap-z1-dot.R |only cTMed-1.0.4/cTMed/build/partial.rdb |binary cTMed-1.0.4/cTMed/man/BootBeta.Rd |only cTMed-1.0.4/cTMed/man/BootBetaStd.Rd |only cTMed-1.0.4/cTMed/man/BootMed.Rd |only cTMed-1.0.4/cTMed/man/BootMedStd.Rd |only cTMed-1.0.4/cTMed/man/DeltaBeta.Rd | 4 cTMed-1.0.4/cTMed/man/DeltaBetaStd.Rd | 10 cTMed-1.0.4/cTMed/man/DeltaIndirectCentral.Rd | 4 cTMed-1.0.4/cTMed/man/DeltaMed.Rd | 4 cTMed-1.0.4/cTMed/man/DeltaMedStd.Rd | 8 cTMed-1.0.4/cTMed/man/DeltaTotalCentral.Rd | 4 cTMed-1.0.4/cTMed/man/Direct.Rd | 4 cTMed-1.0.4/cTMed/man/DirectStd.Rd | 6 cTMed-1.0.4/cTMed/man/ExpCov.Rd | 4 cTMed-1.0.4/cTMed/man/ExpMean.Rd | 4 cTMed-1.0.4/cTMed/man/Indirect.Rd | 4 cTMed-1.0.4/cTMed/man/IndirectCentral.Rd | 4 cTMed-1.0.4/cTMed/man/IndirectStd.Rd | 6 cTMed-1.0.4/cTMed/man/MCBeta.Rd | 8 cTMed-1.0.4/cTMed/man/MCBetaStd.Rd | 9 cTMed-1.0.4/cTMed/man/MCIndirectCentral.Rd | 4 cTMed-1.0.4/cTMed/man/MCMed.Rd | 4 cTMed-1.0.4/cTMed/man/MCMedStd.Rd | 8 cTMed-1.0.4/cTMed/man/MCPhi.Rd | 4 cTMed-1.0.4/cTMed/man/MCTotalCentral.Rd | 4 cTMed-1.0.4/cTMed/man/Med.Rd | 4 cTMed-1.0.4/cTMed/man/MedStd.Rd | 7 cTMed-1.0.4/cTMed/man/PosteriorBeta.Rd | 4 cTMed-1.0.4/cTMed/man/PosteriorIndirectCentral.Rd | 4 cTMed-1.0.4/cTMed/man/PosteriorMed.Rd | 4 cTMed-1.0.4/cTMed/man/PosteriorTotalCentral.Rd | 4 cTMed-1.0.4/cTMed/man/Total.Rd | 4 cTMed-1.0.4/cTMed/man/TotalCentral.Rd | 4 cTMed-1.0.4/cTMed/man/TotalStd.Rd | 6 cTMed-1.0.4/cTMed/man/Trajectory.Rd | 4 cTMed-1.0.4/cTMed/man/confint.ctmedboot.Rd |only cTMed-1.0.4/cTMed/man/plot.ctmedboot.Rd |only cTMed-1.0.4/cTMed/man/print.ctmedboot.Rd |only cTMed-1.0.4/cTMed/man/summary.ctmedboot.Rd |only cTMed-1.0.4/cTMed/tests/testthat/test-cTMed.R |only 111 files changed, 1525 insertions(+), 629 deletions(-)
Title: Calculate Distance Measures for a Given List of Data Frames with
Factors
Description: It provides functions that calculate Mahalanobis distance, Euclidean distance, Manhattan distance, Chebyshev distance, Hamming distance, Canberra distance, Minkowski distance, Cosine distance, Bhattacharyya distance, Jaccard distance, Hellinger distance, Bray-Curtis distance, Sorensen-Dice distance between each pair of species in a list of data frames. These metrics are fundamental in various fields, such as cluster analysis, classification, and other applications of machine learning and data mining, where assessing similarity or dissimilarity between data is crucial. The package is designed to be flexible and easily integrated into data analysis workflows, providing reliable tools for evaluating distances in multidimensional contexts.
Author: Flavio Gioia [aut, cre]
Maintainer: Flavio Gioia <flaviogioia.fg@gmail.com>
Diff between cmahalanobis versions 0.4.2 dated 2024-09-23 and 0.5.0 dated 2025-01-08
DESCRIPTION | 12 MD5 | 52 NAMESPACE | 29 R/cmahalanobis.R | 2537 +++++++++++++++++++++- inst/rmarkdown/template_report_cbhattacharyya.Rmd |only inst/rmarkdown/template_report_cbraycurtis.Rmd |only inst/rmarkdown/template_report_ccanberra.Rmd |only inst/rmarkdown/template_report_cchebyshev.Rmd | 19 inst/rmarkdown/template_report_ccosine.Rmd |only inst/rmarkdown/template_report_ceuclide.Rmd | 15 inst/rmarkdown/template_report_chamming.Rmd |only inst/rmarkdown/template_report_chellinger.Rmd |only inst/rmarkdown/template_report_cjaccard.Rmd |only inst/rmarkdown/template_report_cmahalanobis.Rmd | 2 inst/rmarkdown/template_report_cmanhattan.Rmd | 46 inst/rmarkdown/template_report_cminkowski.Rmd |only inst/rmarkdown/template_report_csorensendice.Rmd |only man/cbraycurtis.Rd |only man/ccanberra.Rd |only man/ccbhattacharyya.Rd |only man/ccosine.Rd |only man/chamming.Rd |only man/chellinger.Rd |only man/cjaccard.Rd |only man/cminkowski.Rd |only man/csorensendice.Rd |only man/generate_report_cbhattacharyya.Rd |only man/generate_report_cbraycurtis.Rd |only man/generate_report_ccanberra.Rd |only man/generate_report_ccosine.Rd |only man/generate_report_chamming.Rd |only man/generate_report_chellinger.Rd |only man/generate_report_cjaccard.Rd |only man/generate_report_cminkowski.Rd |only man/generate_report_csorensendice.Rd |only man/pvaluescbatt.Rd |only man/pvaluescbrcu.Rd |only man/pvaluesccanb.Rd |only man/pvaluesccosi.Rd |only man/pvalueschamm.Rd |only man/pvalueschell.Rd |only man/pvaluescjacc.Rd |only man/pvaluescmink.Rd |only man/pvaluescsore.Rd |only tests/testthat/cmahalanobis.R | 2537 +++++++++++++++++++++- 45 files changed, 5058 insertions(+), 191 deletions(-)
Title: 'tidyverse' Methods and 'ggplot2' Helpers for 'terra' Objects
Description: Extension of the 'tidyverse' for 'SpatRaster' and
'SpatVector' objects of the 'terra' package. It includes also new
'geom_' functions that provide a convenient way of visualizing 'terra'
objects with 'ggplot2'.
Author: Diego Hernangomez [aut, cre, cph]
,
Dewey Dunnington [ctb] ,
ggplot2 authors [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between tidyterra versions 0.6.1 dated 2024-06-08 and 0.6.2 dated 2025-01-08
DESCRIPTION | 15 MD5 | 68 - NAMESPACE | 2 NEWS.md | 8 R/data.R | 2 R/fortify-Spat.R | 355 +++--- R/geom_spatraster.R | 8 R/geom_spatraster_rgb.R | 36 R/scales_cross_blended.R | 1504 ++++++++++++++-------------- R/scales_hypso.R | 4 R/sysdata.rda |binary R/tidyterra-package.R | 1 README.md | 62 - build/partial.rdb |binary build/vignette.rds |binary data/cross_blended_hypsometric_tints_db.rda |binary data/grass_db.rda |binary data/hypsometric_tints_db.rda |binary data/princess_db.rda |binary data/volcano2.rda |binary inst/WORDLIST | 1 inst/doc/tidyterra.html | 2 inst/doc/welcome.Rmd | 16 inst/doc/welcome.html | 326 +++--- inst/schemaorg.json | 4 man/fortify.Spat.Rd | 5 man/geom_spatraster_rgb.Rd | 310 ++--- man/hypsometric_tints_db.Rd | 2 man/scale_cross_blended.Rd | 2 man/scale_hypso.Rd | 4 tests/testthat/test-fortify-Spat.R | 28 tests/testthat/test-geom_spatraster_3lyr.R | 15 tests/testthat/test-geom_spatraster_rgb.R | 48 vignettes/paper.bib | 512 ++++----- vignettes/welcome.Rmd | 16 35 files changed, 1757 insertions(+), 1599 deletions(-)
Title: Generalized Latent Markov Models
Description: Latent Markov models for longitudinal continuous and categorical data. See Bartolucci, Pandolfi, Pennoni (2017)<doi:10.18637/jss.v081.i04>.
Author: Francesco Bartolucci [aut, cre],
Silvia Pandolfi [aut],
Fulvia Pennoni [aut],
Alessio Farcomeni [ctb],
Alessio Serafini [ctb]
Maintainer: Francesco Bartolucci <francesco.bartolucci@unipg.it>
Diff between LMest versions 3.2.4 dated 2024-12-06 and 3.2.5 dated 2025-01-08
DESCRIPTION | 8 +- MD5 | 12 +-- R/complk.R | 20 +++--- R/lmbasic.R | 141 ++++++++++++++++++++++++-------------------- R/lmcovlatent.R | 19 ++++- R/lmest.R | 19 +---- inst/doc/vignetteLMest.html | 96 ++++++++++++++--------------- 7 files changed, 166 insertions(+), 149 deletions(-)
Title: Set Axis Break for 'ggplot2'
Description: An implementation of scale functions for setting axis breaks of a 'gg' plot (S Xu (2021) <doi:10.3389/fgene.2021.774846>).
Author: Guangchuang Yu [aut, cre, cph]
,
Shuangbin Xu [aut]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between ggbreak versions 0.1.2 dated 2023-06-26 and 0.1.3 dated 2025-01-08
DESCRIPTION | 16 +++++++--------- MD5 | 23 +++++++++++++---------- NAMESPACE | 2 ++ NEWS.md | 3 +++ R/ggbreak-package.R |only R/scales.R | 30 ++++++++++++++++++++++++++++++ R/zzz.R | 8 ++++---- build/partial.rdb |only build/vignette.rds |binary inst/doc/ggbreak.R | 8 +------- inst/doc/ggbreak.Rmd | 8 +------- inst/doc/ggbreak.html | 42 +++++++++++++++++++++--------------------- man/ggbreak-package.Rd |only vignettes/ggbreak.Rmd | 8 +------- 14 files changed, 83 insertions(+), 65 deletions(-)
Title: Convenience Functions by Michael Chirico
Description: YACFP (Yet Another Convenience Function Package). get_age() is a fast & accurate tool for measuring fractional years between two dates. stale_package_check() tries to identify any library() calls to unused packages.
Author: Michael Chirico [aut, cre]
Maintainer: Michael Chirico <MichaelChirico4@gmail.com>
Diff between funchir versions 0.2.2 dated 2022-04-17 and 0.3.0-1 dated 2025-01-08
funchir-0.2.2/funchir/R/io_functions.R |only funchir-0.2.2/funchir/man/funchir-io.Rd |only funchir-0.2.2/funchir/man/funchir-table.Rd |only funchir-0.2.2/funchir/tests/testthat/test-io-utils.R |only funchir-0.3.0-1/funchir/DESCRIPTION | 22 funchir-0.3.0-1/funchir/LICENSE |only funchir-0.3.0-1/funchir/MD5 | 28 - funchir-0.3.0-1/funchir/NAMESPACE | 17 funchir-0.3.0-1/funchir/NEWS.md | 16 funchir-0.3.0-1/funchir/R/plot_functions.R | 16 funchir-0.3.0-1/funchir/R/utils.R | 230 ++-------- funchir-0.3.0-1/funchir/man/funchir-infix.Rd | 17 funchir-0.3.0-1/funchir/man/funchir-utils.Rd | 73 --- funchir-0.3.0-1/funchir/man/get_age.Rd |only funchir-0.3.0-1/funchir/tests/testthat/stale_package_test_scripts/simple.R | 6 funchir-0.3.0-1/funchir/tests/testthat/stale_package_test_scripts/use_namespace_call.R | 3 funchir-0.3.0-1/funchir/tests/testthat/test-plot-utils.R | 3 funchir-0.3.0-1/funchir/tests/testthat/test-utils.R | 165 +++---- 18 files changed, 221 insertions(+), 375 deletions(-)
Title: Probabilities for Pedigrees Given DNA Data
Description: An interface to the core 'Familias' functions which are
programmed in C++. The implementation is described in Egeland, Mostad and Olaisen
(1997) <doi:10.1016/S1355-0306(97)72202-0> and Simonsson and Mostad
(2016) <doi:10.1016/j.fsigen.2016.04.005>.
Author: Petter Mostad [aut],
Thore Egeland [aut, cre],
Ivar Simonsson [aut]
Maintainer: Thore Egeland <Thore.Egeland@nmbu.no>
Diff between Familias versions 2.6.1 dated 2024-01-09 and 2.6.2 dated 2025-01-08
DESCRIPTION | 26 +++++++++++++++++++++----- MD5 | 8 ++++---- README.md | 5 ++++- man/Familias-package.Rd | 2 ++ man/FamiliasPosterior.Rd | 9 ++++++++- 5 files changed, 39 insertions(+), 11 deletions(-)
Title: Core Functions to Read and Fit 13c Time Series from Breath Tests
Description: Reads several formats of 13C data (IRIS/Wagner,
BreathID) and CSV. Creates artificial sample data for testing. Fits
Maes/Ghoos, Bluck-Coward self-correcting formula using 'nls', 'nlme'.
Methods to fit breath test curves with Bayesian Stan methods are
refactored to package 'breathteststan'. For a Shiny GUI, see package
'dmenne/breathtestshiny' on github.
Author: Dieter Menne [aut, cre],
Menne Biomed Consulting Tuebingen [cph],
Benjamin Misselwitz [fnd],
Mark Fox [fnd],
Andreas Steingoetter [dtc],
University Hospital of Zurich, Dep. Gastroenterology [fnd, dtc]
Maintainer: Dieter Menne <dieter.menne@menne-biomed.de>
Diff between breathtestcore versions 0.8.8 dated 2024-12-03 and 0.8.9 dated 2025-01-08
DESCRIPTION | 6 - MD5 | 20 +++--- R/breathtest_data.R | 5 - R/read_any_breathtest.R | 5 + R/read_breathid_xml.R | 86 +++++++++++++++------------ inst/doc/data_formats.html | 6 - inst/extdata/BreathID_dec_2025.txt |only inst/extdata/defect_dec_2024_manual_edit.xml |only inst/extdata/short_record.xml |only man/read_breathid_xml.Rd | 7 +- tests/testthat/test_read_any_breathtest.R | 8 ++ tests/testthat/test_read_breathid_xml.R | 10 ++- tests/testthat/testthat-problems.rds |only 13 files changed, 96 insertions(+), 57 deletions(-)
More information about breathtestcore at CRAN
Permanent link
Title: Commodore Amiga File Format Handler
Description: Modern software often poorly support older file formats. This
package intends to handle many file formats that were native to the
antiquated Commodore Amiga machine. This package focuses on file types from
the older Amiga operating systems (<= 3.0). It will read and write specific
file formats and coerces them into more contemporary data.
Author: Pepijn de Vries [aut, cre, dtc]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between AmigaFFH versions 0.4.5 dated 2024-02-29 and 0.4.7 dated 2025-01-08
DESCRIPTION | 13 MD5 | 144 - NEWS.md | 192 +- R/adfExplorer.clone.r | 10 R/basic.r | 3347 ++++++++++++++++++++--------------------- R/bitmapfont.r | 2843 +++++++++++++++++----------------- R/data.r | 370 ++-- R/generic_support.r | 2806 +++++++++++++++++----------------- R/hardwareSprites.r | 596 +++---- R/iff.0.r | 2438 ++++++++++++++--------------- R/iff.8svx.r | 532 +++--- R/iff.ilbm.r | 1384 ++++++++-------- R/system_configuration.r | 996 ++++++------ R/workbench_icon.r | 1399 ++++++++--------- README.md | 11 man/AmigaBasic-files.Rd | 2 man/AmigaBasic.Rd | 2 man/AmigaBasicBMAP-io.Rd | 14 man/AmigaBasicShape.Rd | 2 man/AmigaBitmapFont.Rd | 4 man/ExtractBasic.Rd | 2 man/IFFChunk-class.Rd | 2 man/IFFChunk.Rd | 2 man/WaveToIFF.Rd | 4 man/as.AmigaBasic.Rd | 2 man/as.AmigaBasicBMAP.Rd | 2 man/as.character.Rd | 2 man/as.raster.Rd | 4 man/as.raw.Rd | 2 man/availableFontSizes.Rd | 2 man/bitmapToRaster.Rd | 4 man/c.Rd | 2 man/check.names.AmigaBasic.Rd | 2 man/colourToAmigaRaw.Rd | 2 man/deltaFibonacciCompress.Rd | 18 man/dither.Rd | 6 man/fontName.Rd | 2 man/getAmigaBitmapFont.Rd | 2 man/getIFFChunk.Rd | 2 man/ilbm8lores.iff.Rd | 2 man/index.colours.Rd | 8 man/interpretIFFChunk.Rd | 2 man/play.Rd | 8 man/plot.Rd | 4 man/rasterToAmigaBasicShape.Rd | 2 man/rasterToAmigaBitmapFont.Rd | 10 man/rasterToBitmap.Rd | 4 man/rasterToHWSprite.Rd | 2 man/rasterToIFF.Rd | 2 man/rawToAmigaBasic.Rd | 2 man/rawToAmigaBasicBMAP.Rd | 2 man/rawToAmigaBasicShape.Rd | 2 man/rawToAmigaBitmapFont.Rd | 2 man/rawToAmigaBitmapFontSet.Rd | 9 man/rawToAmigaIcon.Rd | 2 man/rawToIFFChunk.Rd | 2 man/rawToSysConfig.Rd | 21 man/read.AmigaBasic.Rd | 11 man/read.AmigaBasicShape.Rd | 11 man/read.AmigaBitmapFont.Rd | 27 man/read.AmigaBitmapFontSet.Rd | 27 man/read.AmigaIcon.Rd | 9 man/read.SysConfig.Rd | 9 man/read.iff.Rd | 9 man/simpleAmigaIcon.Rd | 2 man/simpleSysConfig.Rd | 2 man/write.AmigaBasic.Rd | 14 man/write.AmigaBasicShape.Rd | 14 man/write.AmigaBitmapFont.Rd | 30 man/write.AmigaIcon.Rd | 12 man/write.SysConfig.Rd | 12 man/write.iff.Rd | 11 tests |only 73 files changed, 8605 insertions(+), 8850 deletions(-)
Title: Accessing and Analyzing Large-Scale Environmental Data
Description: Functions are designed to facilitate access to and utility with large scale, publicly available environmental data in R. The package contains functions for downloading raw data files from web URLs (download_data()), processing the raw data files into clean spatial objects (process_covariates()), and extracting values from the spatial data objects at point and polygon locations (calculate_covariates()). These functions call a series of source-specific functions which are tailored to each data sources/datasets particular URL structure, data format, and spatial/temporal resolution. The functions are tested, versioned, and open source and open access. For sum_edc() method details, see Messier, Akita, and Serre (2012) <doi:10.1021/es203152a>.
Author: Mitchell Manware [aut, ctb] ,
Insang Song [aut, ctb] ,
Eva Marques [aut, ctb] ,
Mariana Alifa Kassien [aut, ctb]
,
Elizabeth Scholl [ctb] ,
Kyle Messier [aut, cre] ,
Spatiotemporal Exposures and Toxicology Group [cph]
Maintainer: Kyle Messier <kyle.messier@nih.gov>
Diff between amadeus versions 1.1.6 dated 2024-11-13 and 1.2.2 dated 2025-01-08
amadeus-1.1.6/amadeus/inst/doc/workflow.R |only amadeus-1.1.6/amadeus/inst/doc/workflow.Rmd |only amadeus-1.1.6/amadeus/inst/doc/workflow.html |only amadeus-1.1.6/amadeus/man/calculate_modis_par.Rd |only amadeus-1.1.6/amadeus/man/calculate_sedac_groads.Rd |only amadeus-1.1.6/amadeus/man/calculate_sedac_population.Rd |only amadeus-1.1.6/amadeus/man/download_sedac_groads.Rd |only amadeus-1.1.6/amadeus/man/download_sedac_population.Rd |only amadeus-1.1.6/amadeus/man/process_sedac_groads.Rd |only amadeus-1.1.6/amadeus/man/process_sedac_population.Rd |only amadeus-1.1.6/amadeus/vignettes/workflow.Rmd |only amadeus-1.2.2/amadeus/DESCRIPTION | 10 amadeus-1.2.2/amadeus/MD5 | 70 +- amadeus-1.2.2/amadeus/NAMESPACE | 20 amadeus-1.2.2/amadeus/NEWS.md |only amadeus-1.2.2/amadeus/R/calculate_covariates.R | 328 ++------------ amadeus-1.2.2/amadeus/R/calculate_covariates_auxiliary.R | 162 ++++++ amadeus-1.2.2/amadeus/R/download.R | 40 - amadeus-1.2.2/amadeus/R/download_auxiliary.R | 4 amadeus-1.2.2/amadeus/R/process.R | 35 - amadeus-1.2.2/amadeus/README.md | 42 - amadeus-1.2.2/amadeus/build/partial.rdb |binary amadeus-1.2.2/amadeus/build/vignette.rds |binary amadeus-1.2.2/amadeus/inst/doc/gridmet_workflow.R |only amadeus-1.2.2/amadeus/inst/doc/gridmet_workflow.Rmd |only amadeus-1.2.2/amadeus/inst/doc/gridmet_workflow.html |only amadeus-1.2.2/amadeus/inst/doc/narr_workflow.R |only amadeus-1.2.2/amadeus/inst/doc/narr_workflow.Rmd |only amadeus-1.2.2/amadeus/inst/doc/narr_workflow.html |only amadeus-1.2.2/amadeus/inst/doc/terraclimate_workflow.R |only amadeus-1.2.2/amadeus/inst/doc/terraclimate_workflow.Rmd |only amadeus-1.2.2/amadeus/inst/doc/terraclimate_workflow.html |only amadeus-1.2.2/amadeus/man/calculate_covariates.Rd | 6 amadeus-1.2.2/amadeus/man/calculate_groads.Rd |only amadeus-1.2.2/amadeus/man/calculate_modis.Rd |only amadeus-1.2.2/amadeus/man/calculate_modis_daily.Rd | 6 amadeus-1.2.2/amadeus/man/calculate_nlcd.Rd | 3 amadeus-1.2.2/amadeus/man/calculate_population.Rd |only amadeus-1.2.2/amadeus/man/download_data.Rd | 4 amadeus-1.2.2/amadeus/man/download_groads.Rd |only amadeus-1.2.2/amadeus/man/download_modis.Rd | 7 amadeus-1.2.2/amadeus/man/download_population.Rd |only amadeus-1.2.2/amadeus/man/process_covariates.Rd | 4 amadeus-1.2.2/amadeus/man/process_groads.Rd |only amadeus-1.2.2/amadeus/man/process_modis_sds.Rd | 2 amadeus-1.2.2/amadeus/man/process_population.Rd |only amadeus-1.2.2/amadeus/man/sum_edc.Rd | 7 amadeus-1.2.2/amadeus/vignettes/gridmet_workflow.Rmd |only amadeus-1.2.2/amadeus/vignettes/images/air2m_process.png |only amadeus-1.2.2/amadeus/vignettes/images/sph_process.png |only amadeus-1.2.2/amadeus/vignettes/images/ws_process.png |only amadeus-1.2.2/amadeus/vignettes/narr_workflow.Rmd |only amadeus-1.2.2/amadeus/vignettes/terraclimate_workflow.Rmd |only 53 files changed, 361 insertions(+), 389 deletions(-)
Title: Common R Scripts and Utilities Used by the Statnet Project
Software
Description: Non-statistical utilities used by the software developed by the Statnet Project. They may also be of use to others.
Author: Pavel N. Krivitsky [aut, cre] ,
Skye Bender-deMoll [ctb],
Chad Klumb [ctb]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between statnet.common versions 4.10.0 dated 2024-10-06 and 4.11.0 dated 2025-01-08
DESCRIPTION | 10 +++---- MD5 | 27 ++++++++++---------- NAMESPACE | 2 + NEWS | 12 +++++++++ NEWS.md | 6 ++++ R/formula.utilities.R | 6 +++- R/logspace.utils.R | 8 ++++++ R/misc.utilities.R | 65 +++++++++++++++++++++++++++++++++++++++++++++++++ build/stage23.rdb |binary inst/CITATION | 14 +++++----- man/logspace.utils.Rd | 9 ++++++ man/modify_in_place.Rd |only man/trim_env.Rd | 4 ++- src/init.c | 6 +--- src/logspace_utils.c | 11 ++++++++ 15 files changed, 148 insertions(+), 32 deletions(-)
More information about statnet.common at CRAN
Permanent link
Title: Interface for the 'QuickJS' Lightweight 'JavaScript' Engine
Description: An 'R' interface to the 'QuickJS' portable 'JavaScript'
engine. The engine and all 'R' to 'JavaScript' interoperability is bundled
within the package, requiring no dependencies beyond a 'C' compiler.
Author: Andrew R. Johnson [aut, cre] ,
Fabrice Bellard [cph] ,
Charlie Gordon [cph] ,
QuickJS-NG Authors [cph]
Maintainer: Andrew R. Johnson <andrew.johnson@arjohnsonau.com>
Diff between QuickJSR versions 1.4.0 dated 2024-10-01 and 1.5.1 dated 2025-01-08
QuickJSR-1.4.0/QuickJSR/src/quickjs/doc |only QuickJSR-1.4.0/QuickJSR/src/quickjs/examples |only QuickJSR-1.4.0/QuickJSR/src/quickjs/gen |only QuickJSR-1.4.0/QuickJSR/src/quickjs/tests |only QuickJSR-1.5.1/QuickJSR/DESCRIPTION | 6 QuickJSR-1.5.1/QuickJSR/LICENSE | 4 QuickJSR-1.5.1/QuickJSR/MD5 | 219 QuickJSR-1.5.1/QuickJSR/NAMESPACE | 20 QuickJSR-1.5.1/QuickJSR/NEWS.md | 133 QuickJSR-1.5.1/QuickJSR/R/JSContext.R | 336 QuickJSR-1.5.1/QuickJSR/R/flags.R | 82 QuickJSR-1.5.1/QuickJSR/R/qjs.R | 158 QuickJSR-1.5.1/QuickJSR/R/quickjsr-package.R | 20 QuickJSR-1.5.1/QuickJSR/R/utils.R | 6 QuickJSR-1.5.1/QuickJSR/R/zzz.R | 8 QuickJSR-1.5.1/QuickJSR/README.md | 284 QuickJSR-1.5.1/QuickJSR/inst/doc/working_with_js_types.Rmd | 224 QuickJSR-1.5.1/QuickJSR/inst/doc/working_with_js_types.html | 2 QuickJSR-1.5.1/QuickJSR/inst/include/cpp11.hpp | 4 QuickJSR-1.5.1/QuickJSR/inst/include/cpp11/R.hpp | 76 QuickJSR-1.5.1/QuickJSR/inst/include/cpp11/altrep.hpp | 46 QuickJSR-1.5.1/QuickJSR/inst/include/cpp11/as.hpp | 4 QuickJSR-1.5.1/QuickJSR/inst/include/cpp11/attribute_proxy.hpp | 4 QuickJSR-1.5.1/QuickJSR/inst/include/cpp11/data_frame.hpp | 16 QuickJSR-1.5.1/QuickJSR/inst/include/cpp11/declarations.hpp | 15 QuickJSR-1.5.1/QuickJSR/inst/include/cpp11/doubles.hpp | 127 QuickJSR-1.5.1/QuickJSR/inst/include/cpp11/environment.hpp | 19 QuickJSR-1.5.1/QuickJSR/inst/include/cpp11/external_pointer.hpp | 12 QuickJSR-1.5.1/QuickJSR/inst/include/cpp11/function.hpp | 60 QuickJSR-1.5.1/QuickJSR/inst/include/cpp11/integers.hpp | 121 QuickJSR-1.5.1/QuickJSR/inst/include/cpp11/list.hpp | 138 QuickJSR-1.5.1/QuickJSR/inst/include/cpp11/list_of.hpp | 8 QuickJSR-1.5.1/QuickJSR/inst/include/cpp11/logicals.hpp | 121 QuickJSR-1.5.1/QuickJSR/inst/include/cpp11/matrix.hpp | 9 QuickJSR-1.5.1/QuickJSR/inst/include/cpp11/named_arg.hpp | 4 QuickJSR-1.5.1/QuickJSR/inst/include/cpp11/protect.hpp | 167 QuickJSR-1.5.1/QuickJSR/inst/include/cpp11/r_bool.hpp | 6 QuickJSR-1.5.1/QuickJSR/inst/include/cpp11/r_string.hpp | 4 QuickJSR-1.5.1/QuickJSR/inst/include/cpp11/r_vector.hpp | 1317 ++- QuickJSR-1.5.1/QuickJSR/inst/include/cpp11/raws.hpp | 133 QuickJSR-1.5.1/QuickJSR/inst/include/cpp11/sexp.hpp | 40 QuickJSR-1.5.1/QuickJSR/inst/include/cpp11/strings.hpp | 133 QuickJSR-1.5.1/QuickJSR/inst/include/quickjs/cutils.h | 31 QuickJSR-1.5.1/QuickJSR/inst/include/quickjs/libunicode-table.h | 3374 ++++---- QuickJSR-1.5.1/QuickJSR/inst/include/quickjs/libunicode.h | 1 QuickJSR-1.5.1/QuickJSR/inst/include/quickjs/quickjs-atom.h | 4 QuickJSR-1.5.1/QuickJSR/inst/include/quickjs/quickjs.h | 158 QuickJSR-1.5.1/QuickJSR/inst/include/quickjs/unicode_gen_def.h | 14 QuickJSR-1.5.1/QuickJSR/inst/include/quickjs_helpers.hpp | 6 QuickJSR-1.5.1/QuickJSR/inst/include/quickjsr/JS_SEXP.hpp | 4 QuickJSR-1.5.1/QuickJSR/inst/tinytest/test_JSContext.R | 94 QuickJSR-1.5.1/QuickJSR/inst/tinytest/test_data_conversion.R | 122 QuickJSR-1.5.1/QuickJSR/inst/tinytest/test_qjs_eval.R | 16 QuickJSR-1.5.1/QuickJSR/inst/tinytest/test_to_json_asis.R | 20 QuickJSR-1.5.1/QuickJSR/inst/tinytest/test_to_json_dataframe.R | 32 QuickJSR-1.5.1/QuickJSR/inst/tinytest/test_to_json_date.R | 28 QuickJSR-1.5.1/QuickJSR/inst/tinytest/test_to_json_factor.R | 12 QuickJSR-1.5.1/QuickJSR/inst/tinytest/test_to_json_matrix.R | 22 QuickJSR-1.5.1/QuickJSR/man/JSContext-method-assign.Rd | 64 QuickJSR-1.5.1/QuickJSR/man/JSContext-method-call.Rd | 66 QuickJSR-1.5.1/QuickJSR/man/JSContext-method-get.Rd | 60 QuickJSR-1.5.1/QuickJSR/man/JSContext-method-source.Rd | 70 QuickJSR-1.5.1/QuickJSR/man/JSContext-method-validate.Rd | 58 QuickJSR-1.5.1/QuickJSR/man/JSContext.Rd | 42 QuickJSR-1.5.1/QuickJSR/man/QuickJSR-package.Rd | 58 QuickJSR-1.5.1/QuickJSR/man/cxxflags.Rd | 38 QuickJSR-1.5.1/QuickJSR/man/from_json.Rd | 34 QuickJSR-1.5.1/QuickJSR/man/ldflags.Rd | 36 QuickJSR-1.5.1/QuickJSR/man/qjs_eval.Rd | 56 QuickJSR-1.5.1/QuickJSR/man/quickjs_version.Rd | 28 QuickJSR-1.5.1/QuickJSR/man/to_json.Rd | 38 QuickJSR-1.5.1/QuickJSR/src/quickjs/CMakeLists.txt | 790 +- QuickJSR-1.5.1/QuickJSR/src/quickjs/LICENSE | 48 QuickJSR-1.5.1/QuickJSR/src/quickjs/README.md | 46 QuickJSR-1.5.1/QuickJSR/src/quickjs/ctest.c |only QuickJSR-1.5.1/QuickJSR/src/quickjs/cutils.c | 22 QuickJSR-1.5.1/QuickJSR/src/quickjs/cutils.h | 31 QuickJSR-1.5.1/QuickJSR/src/quickjs/cxxtest.cc |only QuickJSR-1.5.1/QuickJSR/src/quickjs/fuzz.c |only QuickJSR-1.5.1/QuickJSR/src/quickjs/libbf.c | 7 QuickJSR-1.5.1/QuickJSR/src/quickjs/libregexp.c | 2 QuickJSR-1.5.1/QuickJSR/src/quickjs/libunicode-table.h | 3374 ++++---- QuickJSR-1.5.1/QuickJSR/src/quickjs/libunicode.c | 8 QuickJSR-1.5.1/QuickJSR/src/quickjs/libunicode.h | 1 QuickJSR-1.5.1/QuickJSR/src/quickjs/qjs.c | 192 QuickJSR-1.5.1/QuickJSR/src/quickjs/qjsc.c | 32 QuickJSR-1.5.1/QuickJSR/src/quickjs/quickjs-atom.h | 4 QuickJSR-1.5.1/QuickJSR/src/quickjs/quickjs-libc.c | 355 QuickJSR-1.5.1/QuickJSR/src/quickjs/quickjs.c | 3030 ++++++-- QuickJSR-1.5.1/QuickJSR/src/quickjs/quickjs.h | 158 QuickJSR-1.5.1/QuickJSR/src/quickjs/repl.js | 3773 +++++----- QuickJSR-1.5.1/QuickJSR/src/quickjs/run-test262.c | 858 +- QuickJSR-1.5.1/QuickJSR/src/quickjs/standalone.js |only QuickJSR-1.5.1/QuickJSR/src/quickjs/test262-fast.conf | 264 QuickJSR-1.5.1/QuickJSR/src/quickjs/test262.conf | 782 +- QuickJSR-1.5.1/QuickJSR/src/quickjs/test262_errors.txt | 924 -- QuickJSR-1.5.1/QuickJSR/src/quickjs/tests.conf |only QuickJSR-1.5.1/QuickJSR/src/quickjs/unicode_download.sh | 38 QuickJSR-1.5.1/QuickJSR/src/quickjs/unicode_gen.c | 25 QuickJSR-1.5.1/QuickJSR/src/quickjs/unicode_gen_def.h | 14 QuickJSR-1.5.1/QuickJSR/src/quickjsr.cpp | 14 QuickJSR-1.5.1/QuickJSR/tests/tinytest.R | 10 QuickJSR-1.5.1/QuickJSR/vignettes/working_with_js_types.Rmd | 224 103 files changed, 12899 insertions(+), 10799 deletions(-)
Title: Quantile-Frequency Analysis (QFA) of Time Series
Description: Quantile-frequency analysis (QFA) of time series based on trigonometric quantile regression.
Spline quantile regression (SQR) for regression coefficient estimation.
References:
[1] Li, T.-H. (2012) "Quantile periodograms", Journal of the American Statistical
Association, 107, 765–776, <doi:10.1080/01621459.2012.682815>.
[2] Li, T.-H. (2014) Time Series with Mixed Spectra, CRC Press, <doi:10.1201/b15154>
[3] Li, T.-H. (2022) "Quantile Fourier transform, quantile series, and nonparametric
estimation of quantile spectra", <doi:10.48550/arXiv.2211.05844>.
[4] Li, T.-H. (2024) "Quantile crossing spectrum and spline autoregression
estimation," <doi:10.48550/arXiv.2412.02513>.
[5] Li, T.-H. (2024) "Spline autoregression method for estimation of quantile spectrum",
<doi:10.48550/arXiv.2412.17163>.
Author: Ta-Hsin Li [cre, aut]
Maintainer: Ta-Hsin Li <thl024@outlook.com>
Diff between qfa versions 3.1 dated 2024-12-20 and 4.0 dated 2025-01-08
qfa-3.1/qfa/R/qfa3.1.R |only qfa-4.0/qfa/DESCRIPTION | 23 ++++++----- qfa-4.0/qfa/MD5 | 70 +++++++++++++++++++++--------------- qfa-4.0/qfa/NAMESPACE | 5 ++ qfa-4.0/qfa/R/datasets.R |only qfa-4.0/qfa/R/qfa4.0.R |only qfa-4.0/qfa/data |only qfa-4.0/qfa/man/birthweight.Rd |only qfa-4.0/qfa/man/engel.Rd |only qfa-4.0/qfa/man/per.Rd | 6 +-- qfa-4.0/qfa/man/qacf.Rd | 2 - qfa-4.0/qfa/man/qcser.Rd | 4 +- qfa-4.0/qfa/man/qdft.Rd | 2 - qfa-4.0/qfa/man/qdft2qacf.Rd | 2 - qfa-4.0/qfa/man/qdft2qper.Rd | 2 - qfa-4.0/qfa/man/qdft2qser.Rd | 2 - qfa-4.0/qfa/man/qfa.plot.Rd | 2 - qfa-4.0/qfa/man/qkl.divergence.Rd | 2 - qfa-4.0/qfa/man/qper.Rd | 2 - qfa-4.0/qfa/man/qper2.Rd | 2 - qfa-4.0/qfa/man/qser.Rd | 2 - qfa-4.0/qfa/man/qser2ar.Rd | 2 - qfa-4.0/qfa/man/qser2qacf.Rd | 2 - qfa-4.0/qfa/man/qser2sar.Rd | 2 - qfa-4.0/qfa/man/qspec.ar.Rd | 2 - qfa-4.0/qfa/man/qspec.lw.Rd | 2 - qfa-4.0/qfa/man/qspec.sar.Rd | 2 - qfa-4.0/qfa/man/qspec2qcoh.Rd | 2 - qfa-4.0/qfa/man/sar.eq.bootstrap.Rd | 6 +-- qfa-4.0/qfa/man/sar.eq.test.Rd | 2 - qfa-4.0/qfa/man/sar.gc.bootstrap.Rd | 6 +-- qfa-4.0/qfa/man/sar.gc.coef.Rd | 2 - qfa-4.0/qfa/man/sar.gc.test.Rd | 2 - qfa-4.0/qfa/man/sqdft.Rd |only qfa-4.0/qfa/man/sqdft.fit.Rd |only qfa-4.0/qfa/man/sqr.Rd |only qfa-4.0/qfa/man/sqr.fit.Rd | 26 ++++++++++--- qfa-4.0/qfa/man/sqr.fit.optim.Rd |only qfa-4.0/qfa/man/tqr.fit.Rd | 2 - qfa-4.0/qfa/man/tsqr.fit.Rd |only qfa-4.0/qfa/man/yearssn.Rd |only 41 files changed, 111 insertions(+), 77 deletions(-)
Title: Simulation of Parameterized Stochastic Boolean Networks
Description: A Boolean network is a particular kind of discrete dynamical system where the variables are simple binary switches. Despite its simplicity, Boolean network modeling has been a successful method to describe the behavioral pattern of various phenomena. Applying stochastic noise to Boolean networks is a useful approach for representing the effects of various perturbing stimuli on complex systems. A number of methods have been developed to control noise effects on Boolean networks using parameters integrated into the update rules. This package provides functions to examine three such methods: Boolean network with perturbations (BNp), described by Trairatphisan et al. (2013) <doi:10.1186/1478-811X-11-46>, stochastic discrete dynamical systems (SDDS), proposed by Murrugarra et al. (2012) <doi:10.1186/1687-4153-2012-5>, and Boolean network with probabilistic edge weights (PEW), presented by Deritei et al. (2022) <doi:10.1371/journal.pcbi.1010536>. This package includes sourc [...truncated...]
Author: Mohammad Taheri-Ledari [aut, cre, cph]
,
Kaveh Kavousi [ctb] ,
Sayed-Amir Marashi [ctb] ,
Authors of BoolNet [ctb] ,
Troy D. Hanson [ctb]
Maintainer: Mohammad Taheri-Ledari <mo.taheri@ut.ac.ir>
Diff between pastboon versions 0.1.2 dated 2024-08-22 and 0.1.3 dated 2025-01-08
DESCRIPTION | 6 +++--- MD5 | 14 ++++++++------ R/calc_convergence_time.R | 2 +- R/get_reached_states.R | 19 +++++++++++++------ data/myeloid_differentiation_net.rda |only man/calc_node_activities.Rd | 29 +++++++++++++++++++++-------- man/lac_operon_net.Rd | 2 +- man/myeloid_differentiation_net.Rd |only src/PEW_simulation.c | 8 ++++---- 9 files changed, 51 insertions(+), 29 deletions(-)
Title: Characterise Tables of an OMOP Common Data Model Instance
Description: Summarises key information in data mapped to the Observational
Medical Outcomes Partnership (OMOP) common data model. Assess suitability to
perform specific epidemiological studies and explore the different domains
to obtain feasibility counts and trends.
Author: Marta Alcalde-Herraiz [aut] ,
Kim Lopez-Guell [aut] ,
Elin Rowlands [aut] ,
Cecilia Campanile [aut, cre] ,
Edward Burn [aut] ,
Marti Catala [aut]
Maintainer: Cecilia Campanile <cecilia.campanile@ndorms.ox.ac.uk>
Diff between OmopSketch versions 0.1.2 dated 2024-11-12 and 0.2.0 dated 2025-01-08
OmopSketch-0.1.2/OmopSketch/R/plotConceptCounts.R |only OmopSketch-0.1.2/OmopSketch/R/summarisePopulationCharacteristics.R |only OmopSketch-0.1.2/OmopSketch/R/tablePopulationCharacteristics.R |only OmopSketch-0.1.2/OmopSketch/inst/doc/B-summarise_concept_counts.R |only OmopSketch-0.1.2/OmopSketch/inst/doc/B-summarise_concept_counts.Rmd |only OmopSketch-0.1.2/OmopSketch/inst/doc/B-summarise_concept_counts.html |only OmopSketch-0.1.2/OmopSketch/man/plotConceptCounts.Rd |only OmopSketch-0.1.2/OmopSketch/man/summarisePopulationCharacteristics.Rd |only OmopSketch-0.1.2/OmopSketch/man/tablePopulationCharacteristics.Rd |only OmopSketch-0.1.2/OmopSketch/tests/testthat/test-summariseConceptCounts.R |only OmopSketch-0.1.2/OmopSketch/tests/testthat/test-summarisePopulationCharacteristics.R |only OmopSketch-0.1.2/OmopSketch/vignettes/B-summarise_concept_counts.Rmd |only OmopSketch-0.2.0/OmopSketch/DESCRIPTION | 33 OmopSketch-0.2.0/OmopSketch/MD5 | 152 OmopSketch-0.2.0/OmopSketch/NAMESPACE | 69 OmopSketch-0.2.0/OmopSketch/R/OmopSketch-package.R | 22 OmopSketch-0.2.0/OmopSketch/R/checks.R | 358 - OmopSketch-0.2.0/OmopSketch/R/mockOmopSketch.R | 155 OmopSketch-0.2.0/OmopSketch/R/plotConceptSetCounts.R |only OmopSketch-0.2.0/OmopSketch/R/plotInObservation.R | 181 OmopSketch-0.2.0/OmopSketch/R/plotObservationPeriod.R | 289 - OmopSketch-0.2.0/OmopSketch/R/plotRecordCount.R | 160 OmopSketch-0.2.0/OmopSketch/R/reexport-omopgenerics.R | 40 OmopSketch-0.2.0/OmopSketch/R/summariseClinicalRecords.R | 1017 +-- OmopSketch-0.2.0/OmopSketch/R/summariseConceptCounts.R | 598 -- OmopSketch-0.2.0/OmopSketch/R/summariseConceptIdCounts.R |only OmopSketch-0.2.0/OmopSketch/R/summariseConceptSetCounts.R |only OmopSketch-0.2.0/OmopSketch/R/summariseInObservation.R | 717 +- OmopSketch-0.2.0/OmopSketch/R/summariseInternal.R |only OmopSketch-0.2.0/OmopSketch/R/summariseMissingData.R |only OmopSketch-0.2.0/OmopSketch/R/summariseObservationPeriod.R | 422 - OmopSketch-0.2.0/OmopSketch/R/summariseOmopSnapshot.R | 10 OmopSketch-0.2.0/OmopSketch/R/summariseRecordCount.R | 429 - OmopSketch-0.2.0/OmopSketch/R/sysdata.rda |binary OmopSketch-0.2.0/OmopSketch/R/tableClinicalRecords.R | 5 OmopSketch-0.2.0/OmopSketch/R/tableConceptIdCounts.R |only OmopSketch-0.2.0/OmopSketch/R/tableMissingData.R |only OmopSketch-0.2.0/OmopSketch/R/tableObservationPeriod.R | 5 OmopSketch-0.2.0/OmopSketch/R/tableOmopSnapshot.R | 6 OmopSketch-0.2.0/OmopSketch/R/utilities.R | 116 OmopSketch-0.2.0/OmopSketch/README.md | 903 --- OmopSketch-0.2.0/OmopSketch/build/vignette.rds |binary OmopSketch-0.2.0/OmopSketch/inst/doc/A-summarise_clinical_tables_records.R | 249 OmopSketch-0.2.0/OmopSketch/inst/doc/A-summarise_clinical_tables_records.Rmd | 397 - 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OmopSketch-0.2.0/OmopSketch/vignettes/B-summarise_concept_set_counts.Rmd |only 98 files changed, 5809 insertions(+), 6607 deletions(-)
Title: Manipulating Labelled Data
Description: Work with labelled data imported from 'SPSS'
or 'Stata' with 'haven' or 'foreign'. This package
provides useful functions to deal with "haven_labelled" and
"haven_labelled_spss" classes introduced by 'haven' package.
Author: Joseph Larmarange [aut, cre] ,
Daniel Ludecke [ctb],
Hadley Wickham [ctb],
Michal Bojanowski [ctb],
Francois Briatte [ctb]
Maintainer: Joseph Larmarange <joseph@larmarange.net>
Diff between labelled versions 2.13.0 dated 2024-04-23 and 2.14.0 dated 2025-01-08
labelled-2.13.0/labelled/inst/doc/intro_labelled.R |only labelled-2.13.0/labelled/inst/doc/intro_labelled.Rmd |only labelled-2.13.0/labelled/inst/doc/intro_labelled.html |only labelled-2.13.0/labelled/man/figures/labelled.png |only labelled-2.13.0/labelled/man/figures/labelled.svg |only labelled-2.13.0/labelled/vignettes/intro_labelled.Rmd |only labelled-2.14.0/labelled/DESCRIPTION | 19 - labelled-2.14.0/labelled/MD5 | 94 ++++---- labelled-2.14.0/labelled/NAMESPACE | 3 labelled-2.14.0/labelled/NEWS.md | 12 + labelled-2.14.0/labelled/R/copy_labels.R | 31 -- labelled-2.14.0/labelled/R/import-standalone-obj-type.R |only labelled-2.14.0/labelled/R/import-standalone-types-check.R |only labelled-2.14.0/labelled/R/is_prefixed.R | 10 labelled-2.14.0/labelled/R/labelled-package.R | 7 labelled-2.14.0/labelled/R/lookfor.R | 16 - labelled-2.14.0/labelled/R/na_values.R | 72 +++--- labelled-2.14.0/labelled/R/recode.R | 14 - labelled-2.14.0/labelled/R/recode_if.R | 33 +- labelled-2.14.0/labelled/R/remove_labels.R | 28 +- labelled-2.14.0/labelled/R/tagged_na.R | 12 - labelled-2.14.0/labelled/R/to_factor.R | 2 labelled-2.14.0/labelled/R/to_labelled.R | 30 -- labelled-2.14.0/labelled/R/update_with.R | 23 +- labelled-2.14.0/labelled/R/val_labels.R | 135 ++++-------- labelled-2.14.0/labelled/R/var_label.R | 74 +++--- labelled-2.14.0/labelled/README.md | 4 labelled-2.14.0/labelled/build/vignette.rds |binary labelled-2.14.0/labelled/inst/WORDLIST | 1 labelled-2.14.0/labelled/inst/doc/labelled.R |only labelled-2.14.0/labelled/inst/doc/labelled.Rmd |only labelled-2.14.0/labelled/inst/doc/labelled.html |only labelled-2.14.0/labelled/inst/doc/look_for.Rmd | 4 labelled-2.14.0/labelled/inst/doc/look_for.html | 12 - labelled-2.14.0/labelled/inst/doc/missing_values.html | 10 labelled-2.14.0/labelled/inst/doc/packed_columns.html | 4 labelled-2.14.0/labelled/man/figures/logo.png |only labelled-2.14.0/labelled/man/figures/logo.svg |only labelled-2.14.0/labelled/man/look_for.Rd | 3 labelled-2.14.0/labelled/man/recode.haven_labelled.Rd | 6 labelled-2.14.0/labelled/man/to_labelled.Rd | 4 labelled-2.14.0/labelled/man/update_variable_labels_with.Rd | 12 + labelled-2.14.0/labelled/man/var_label.Rd | 9 labelled-2.14.0/labelled/tests/testthat.R | 9 labelled-2.14.0/labelled/tests/testthat/test-copy_labels.r | 12 - labelled-2.14.0/labelled/tests/testthat/test-labelled.r | 81 ++++--- labelled-2.14.0/labelled/tests/testthat/test-miscellanous.R | 2 labelled-2.14.0/labelled/tests/testthat/test-na_values.R | 12 - labelled-2.14.0/labelled/tests/testthat/test-recode_if.r | 12 - labelled-2.14.0/labelled/tests/testthat/test-tagged_na.r | 7 labelled-2.14.0/labelled/tests/testthat/test-to_labelled.r | 17 - labelled-2.14.0/labelled/tests/testthat/test-update_with.r | 12 - labelled-2.14.0/labelled/tests/testthat/test_lookfor.R | 7 labelled-2.14.0/labelled/vignettes/labelled.Rmd |only labelled-2.14.0/labelled/vignettes/look_for.Rmd | 4 55 files changed, 440 insertions(+), 419 deletions(-)
Title: USGS INL Project Office Publications
Description: Contains bibliographic information for the U.S. Geological Survey
(USGS) Idaho National Laboratory (INL) Project Office.
Author: Jason C. Fisher [aut, cre] ,
Kerri C. Treinen [aut] ,
Allison R. Trcka [aut]
Maintainer: Jason C. Fisher <jfisher@usgs.gov>
Diff between inlpubs versions 1.1.3 dated 2024-07-02 and 1.2.0 dated 2025-01-08
inlpubs-1.1.3/inlpubs/R/extract_pdf_image.R |only inlpubs-1.1.3/inlpubs/R/extract_pdf_text.R |only inlpubs-1.1.3/inlpubs/man/extract_pdf_image.Rd |only inlpubs-1.1.3/inlpubs/man/extract_pdf_text.Rd |only inlpubs-1.2.0/inlpubs/DESCRIPTION | 10 +- inlpubs-1.2.0/inlpubs/MD5 | 34 ++++---- inlpubs-1.2.0/inlpubs/NAMESPACE | 4 inlpubs-1.2.0/inlpubs/NEWS.md | 5 + inlpubs-1.2.0/inlpubs/R/add_content.R | 11 -- inlpubs-1.2.0/inlpubs/R/get_pdf_image.R |only inlpubs-1.2.0/inlpubs/R/get_pdf_text.R |only inlpubs-1.2.0/inlpubs/R/terms.R | 2 inlpubs-1.2.0/inlpubs/README.md | 104 +++++++++++++++++++------ inlpubs-1.2.0/inlpubs/build/partial.rdb |binary inlpubs-1.2.0/inlpubs/data/authors.rda |binary inlpubs-1.2.0/inlpubs/data/pubs.rda |binary inlpubs-1.2.0/inlpubs/data/terms.rda |binary inlpubs-1.2.0/inlpubs/inst/REFERENCES.bib | 53 ++++++++++++ inlpubs-1.2.0/inlpubs/man/add_content.Rd | 6 - inlpubs-1.2.0/inlpubs/man/get_pdf_image.Rd |only inlpubs-1.2.0/inlpubs/man/get_pdf_text.Rd |only inlpubs-1.2.0/inlpubs/man/terms.Rd | 2 22 files changed, 173 insertions(+), 58 deletions(-)
Title: Merge and Download International Large-Scale Assessments (ILSA)
Data
Description: Merges and downloads 'SPSS' data from different International Large-Scale Assessments (ILSA), including: Trends in International Mathematics and Science Study (TIMSS), Progress in International Reading Literacy Study (PIRLS), and others.
Author: Andres Christiansen [aut, cre]
,
Andres Strello [ctb]
Maintainer: Andres Christiansen <andres.christiansen@iea-hamburg.de>
Diff between ILSAmerge versions 1.3.0 dated 2024-11-26 and 1.3.5 dated 2025-01-08
DESCRIPTION | 8 - MD5 | 64 ++++++++----- NAMESPACE | 8 + NEWS.md | 11 +- R/ILSAdownload.R | 7 - R/ILSAmerge.R | 58 ++++++++---- R/ILSAready.R | 10 +- R/ILSArename.R | 1 R/addSchools.R | 6 - R/asthistibble.R |only R/combineStudents.R | 8 - R/get.atr.R |only R/justload.R | 44 +++++---- R/mistoNAs.R |only R/readILSA.R | 77 +++++++++++++++- R/spss.syntax.R | 1 R/sysdata.rda |binary R/untibble.R |only R/whichcol.R |only README.md | 9 - build/vignette.rds |binary inst/doc/Download.R | 14 +- inst/doc/Download.html | 50 ++++------ inst/doc/IdentifyILSAfiles.html | 12 +- inst/doc/Load.html | 110 ++++++++++++----------- inst/doc/Merge.R | 6 - inst/doc/Merge.html | 170 ++++++++++++++++++------------------ inst/doc/Onestep.html | 120 ++++++++++++------------- inst/doc/Rename.html | 24 ++--- inst/extdata/ilsainfo/ILSAlinks.csv |only man/ILSAdownload.Rd | 5 - man/ILSAready.Rd | 9 + man/asthistibble.Rd |only man/get.atr.Rd |only man/justload.Rd | 2 man/mistoNAs.Rd |only man/readILSA.Rd |only man/untibble.Rd |only man/whichcol.Rd |only 39 files changed, 485 insertions(+), 349 deletions(-)
Title: Machine Learning Time Series Forecasting
Description: Compute static, onestep and multistep time series forecasts for machine learning models.
Author: Ho Tsung-wu [aut, cre]
Maintainer: Ho Tsung-wu <tsungwu@ntnu.edu.tw>
Diff between iForecast versions 1.0.9 dated 2024-10-31 and 1.1.0 dated 2025-01-08
iForecast-1.0.9/iForecast/R/rollingWindows.R |only iForecast-1.0.9/iForecast/R/ttsAutoML.R |only iForecast-1.0.9/iForecast/R/ttsCaret.R |only iForecast-1.0.9/iForecast/R/ttsPredict.R |only iForecast-1.1.0/iForecast/DESCRIPTION | 15 ++++----- iForecast-1.1.0/iForecast/MD5 | 24 ++++++++------- iForecast-1.1.0/iForecast/NAMESPACE | 9 ++--- iForecast-1.1.0/iForecast/R/tts_autoML.R |only iForecast-1.1.0/iForecast/R/tts_caret.R |only iForecast-1.1.0/iForecast/R/tts_predict.R |only iForecast-1.1.0/iForecast/R/tts_rollingWindows.R |only iForecast-1.1.0/iForecast/R/tts_utilities.R |only iForecast-1.1.0/iForecast/data/bc.rda |binary iForecast-1.1.0/iForecast/man/Accuracy.Rd |only iForecast-1.1.0/iForecast/man/iForecast.Rd | 32 +++++++++++--------- iForecast-1.1.0/iForecast/man/rollingWindows.Rd | 26 +++++++++++----- iForecast-1.1.0/iForecast/man/tts.autoML.Rd | 36 ++++++++++++++--------- iForecast-1.1.0/iForecast/man/tts.caret.Rd | 30 ++++++++++--------- 18 files changed, 100 insertions(+), 72 deletions(-)
Title: General Equilibrium Modeling
Description: Some tools for developing general equilibrium models and some general equilibrium models. These models can be used for teaching economic theory and are built by the methods of new structural economics (see LI Wu, 2019, ISBN: 9787521804225, General Equilibrium and Structural Dynamics: Perspectives of New Structural Economics. Beijing: Economic Science Press). The model form and mathematical methods can be traced back to J. von Neumann (1945, A Model of General Economic Equilibrium. The Review of Economic Studies, 13. pp. 1-9), J. G. Kemeny, O. Morgenstern and G. L. Thompson (1956, A Generalization of the von Neumann Model of an Expanding Economy, Econometrica, 24, pp. 115-135) et al. By the way, J. G. Kemeny is a co-inventor of the computer language BASIC.
Author: Wu LI [aut, cre]
Maintainer: Wu LI <liwu.shu@qq.com>
Diff between GE versions 0.4.5 dated 2024-06-05 and 0.4.8 dated 2025-01-08
GE-0.4.5/GE/man/gemInstantaneousEquilibriumPath_StickyDecisions.Rd |only GE-0.4.8/GE/DESCRIPTION | 20 - GE-0.4.8/GE/MD5 | 144 +++++----- GE-0.4.8/GE/NAMESPACE | 4 GE-0.4.8/GE/R/convert_ir.R |only GE-0.4.8/GE/R/demCreditPolicy.R | 4 GE-0.4.8/GE/R/gemBalancedGrowthPath.R | 2 GE-0.4.8/GE/R/gemCanonicalDynamicMacroeconomic_3_2.R | 19 - GE-0.4.8/GE/R/gemCanonicalDynamicMacroeconomic_4_3.R | 20 - GE-0.4.8/GE/R/gemCanonicalDynamicMacroeconomic_Sequential_3_2.R | 10 GE-0.4.8/GE/R/gemCapitalAccumulation_3_3.R | 4 GE-0.4.8/GE/R/gemConstantGrowthPath_TechnologyProgress_3_3.R | 2 GE-0.4.8/GE/R/gemExogenousUtilityLevel_EndogenousLaborSupply_3_3.R | 2 GE-0.4.8/GE/R/gemFirmAsConsumer.R | 2 GE-0.4.8/GE/R/gemHeterogeneousFirms_2_3.R | 4 GE-0.4.8/GE/R/gemInstantaneousEquilibriumPath_StickyDecisions.R | 8 GE-0.4.8/GE/R/gemIntertemporalStochastic_Bank_TwoPeriods.R | 60 +++- GE-0.4.8/GE/R/gemIntertemporal_EndogenousEquilibriumInterestRate_MoneyVelocity.R | 86 +++-- GE-0.4.8/GE/R/gemLand_Labor.R | 6 GE-0.4.8/GE/R/gemLand_Labor_Capital_4_3.R | 10 GE-0.4.8/GE/R/gemMarketClearingPath_2_2.R | 4 GE-0.4.8/GE/R/gemMoney_3_2.R | 2 GE-0.4.8/GE/R/gemOLGF_OneFirm.R | 2 GE-0.4.8/GE/R/gemOLGF_PureExchange.R | 129 ++++++-- GE-0.4.8/GE/R/gemOLG_StochasticInstantaneousEquilibrium_3_3.R |only GE-0.4.8/GE/R/gemOLG_StochasticSequential_3_3.R | 6 GE-0.4.8/GE/R/gemPersistentTechnologicalProgress.R | 6 GE-0.4.8/GE/R/gemResearchDevelopmentIntensity.R | 11 GE-0.4.8/GE/R/gemTemporaryEquilibriumPath.R | 4 GE-0.4.8/GE/R/gem_4_4.R | 2 GE-0.4.8/GE/R/gemstEndogenousLaborSupply_2_2.R | 2 GE-0.4.8/GE/R/gemstEndogenousProductionFunction_2_2.R | 2 GE-0.4.8/GE/R/gemstEndogenousUtilityFunction.R | 2 GE-0.4.8/GE/R/gemstStructuralMultipleEquilibria_2_2.R | 4 GE-0.4.8/GE/R/makePolicyStickyPrice.R | 4 GE-0.4.8/GE/R/node_plot.R | 2 GE-0.4.8/GE/R/policyMarketClearingPrice.R | 16 - GE-0.4.8/GE/R/rate_to_beta.R | 4 GE-0.4.8/GE/R/sdm2.R | 10 GE-0.4.8/GE/man/AMSD.Rd | 6 GE-0.4.8/GE/man/DCES.Rd | 10 GE-0.4.8/GE/man/convert_ir.Rd |only GE-0.4.8/GE/man/demCreditPolicy.Rd | 4 GE-0.4.8/GE/man/gemBalancedGrowthPath.Rd | 2 GE-0.4.8/GE/man/gemCanonicalDynamicMacroeconomic_3_2.Rd | 21 - GE-0.4.8/GE/man/gemCanonicalDynamicMacroeconomic_4_3.Rd | 22 - GE-0.4.8/GE/man/gemCanonicalDynamicMacroeconomic_Sequential_3_2.Rd | 10 GE-0.4.8/GE/man/gemCapitalAccumulation.Rd | 4 GE-0.4.8/GE/man/gemConstantGrowthPath_TechnologyProgress_3_3.Rd | 2 GE-0.4.8/GE/man/gemExogenousUtilityLevel_EndogenousLaborSupply_3_3.Rd | 2 GE-0.4.8/GE/man/gemFirmAsConsumer.Rd | 2 GE-0.4.8/GE/man/gemHeterogeneousFirms_2_3.Rd | 4 GE-0.4.8/GE/man/gemIntertemporalStochastic_Bank_TwoPeriods.Rd | 60 +++- GE-0.4.8/GE/man/gemIntertemporal_EndogenousEquilibriumInterestRate_MoneyVelocity.Rd | 86 +++-- GE-0.4.8/GE/man/gemLand_Labor.Rd | 6 GE-0.4.8/GE/man/gemLand_Labor_Capital_4_3.Rd | 10 GE-0.4.8/GE/man/gemMarketClearingPath_2_2.Rd | 4 GE-0.4.8/GE/man/gemMoney_3_2.Rd | 2 GE-0.4.8/GE/man/gemOLGF_OneFirm.Rd | 2 GE-0.4.8/GE/man/gemOLGF_PureExchange.Rd | 123 ++++++-- GE-0.4.8/GE/man/gemOLG_StochasticSequential_3_3.Rd | 6 GE-0.4.8/GE/man/gemOLG_StochasticSpotEquilibrium_3_3.Rd |only GE-0.4.8/GE/man/gemPersistentTechnologicalProgress.Rd | 6 GE-0.4.8/GE/man/gemResearchDevelopmentIntensity.Rd | 11 GE-0.4.8/GE/man/gemSpotEquilibriumPath_StickyDecisions.Rd |only GE-0.4.8/GE/man/gemTemporaryEquilibriumPath.Rd | 4 GE-0.4.8/GE/man/gem_4_4.Rd | 2 GE-0.4.8/GE/man/gemstEndogenousLaborSupply_2_2.Rd | 2 GE-0.4.8/GE/man/gemstEndogenousProductionFunction_2_2.Rd | 2 GE-0.4.8/GE/man/gemstEndogenousUtilityFunction.Rd | 2 GE-0.4.8/GE/man/gemstStructuralMultipleEquilibria_2_2.Rd | 4 GE-0.4.8/GE/man/node_plot.Rd | 2 GE-0.4.8/GE/man/policyMarketClearingPrice.Rd | 4 GE-0.4.8/GE/man/rate_to_beta.Rd | 10 GE-0.4.8/GE/man/sdm2.Rd | 12 GE-0.4.8/GE/man/var.p.Rd | 6 76 files changed, 663 insertions(+), 411 deletions(-)
Title: Fast Machine Learning Model Training and Evaluation
Description: Streamlines the training, evaluation, and comparison of multiple machine learning models with minimal code by providing
comprehensive data preprocessing and support for a wide range of algorithms with hyperparameter tuning.
It offers performance metrics and visualization tools to facilitate efficient and effective machine learning workflows.
Author: Selcuk Korkmaz [aut, cre] ,
Dincer Goksuluk [aut] ,
Eda Karaismailoglu [aut]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>
Diff between fastml versions 0.3.0 dated 2024-12-16 and 0.4.0 dated 2025-01-08
fastml-0.3.0/fastml/R/explain.fastml_model.R |only fastml-0.3.0/fastml/man/explain.Rd |only fastml-0.4.0/fastml/DESCRIPTION | 23 + fastml-0.4.0/fastml/MD5 | 31 +- fastml-0.4.0/fastml/NAMESPACE | 86 +++++- fastml-0.4.0/fastml/R/evaluate_models.R | 25 + fastml-0.4.0/fastml/R/fastexplain.R |only fastml-0.4.0/fastml/R/fastexplore.R |only fastml-0.4.0/fastml/R/fastml.R | 171 +++++++----- fastml-0.4.0/fastml/R/helper_functions.R |only fastml-0.4.0/fastml/R/models.R | 95 +++++- fastml-0.4.0/fastml/R/sanitize.R |only fastml-0.4.0/fastml/R/summary.fastml_model.R | 340 +++++++++++++++++++----- fastml-0.4.0/fastml/R/train_models.R | 70 +++- fastml-0.4.0/fastml/man/evaluate_models.Rd | 12 fastml-0.4.0/fastml/man/fastexplain.Rd |only fastml-0.4.0/fastml/man/fastexplore.Rd |only fastml-0.4.0/fastml/man/fastml.Rd | 23 + fastml-0.4.0/fastml/man/sanitize.Rd |only fastml-0.4.0/fastml/man/summary.fastml_model.Rd | 3 fastml-0.4.0/fastml/tests |only 21 files changed, 686 insertions(+), 193 deletions(-)
Title: Automatic Codebooks from Metadata Encoded in Dataset Attributes
Description: Easily automate the following tasks to describe data frames:
Summarise the distributions, and labelled missings of variables graphically
and using descriptive statistics.
For surveys, compute and summarise reliabilities (internal consistencies,
retest, multilevel) for psychological scales.
Combine this information with metadata (such as item labels and labelled
values) that is derived from R attributes.
To do so, the package relies on 'rmarkdown' partials, so you can generate
HTML, PDF, and Word documents.
Codebooks are also available as tables (CSV, Excel, etc.) and in JSON-LD, so
that search engines can find your data and index the metadata.
The metadata are also available at your fingertips via RStudio Addins.
Author: Ruben Arslan [aut, cre]
Maintainer: Ruben Arslan <ruben.arslan@gmail.com>
Diff between codebook versions 0.9.5 dated 2024-10-14 and 0.9.6 dated 2025-01-08
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 5 +++++ inst/doc/codebook.html | 8 ++++---- inst/doc/codebook_qualtrics.html | 4 ++-- inst/doc/codebook_sav.html | 4 ++-- inst/doc/codebook_tutorial.html | 4 ++-- 7 files changed, 25 insertions(+), 20 deletions(-)
Title: Stan-Based Fit to Gastric Emptying Curves
Description: Stan-based curve-fitting function
for use with package 'breathtestcore' by the same author.
Stan functions are refactored here for easier testing.
Author: Dieter Menne [aut, cre],
Menne Biomed Consulting Tuebingen [cph],
Benjamin Misselwitz [fnd],
Mark Fox [fnd],
University Hospital of Zurich, Dep. Gastroenterology [fnd, dtc]
Maintainer: Dieter Menne <dieter.menne@menne-biomed.de>
Diff between breathteststan versions 0.8.8 dated 2024-12-03 and 0.8.9 dated 2025-01-08
DESCRIPTION | 8 ++++---- MD5 | 3 ++- tests/testthat/test_stan_fit_6.R |only 3 files changed, 6 insertions(+), 5 deletions(-)
More information about breathteststan at CRAN
Permanent link
Title: SPecies Association Analysis
Description: Miscellaneous functions for analysing species association
and niche overlap.
Author: Jinlong Zhang [aut, cre]
Maintainer: Jinlong Zhang <jinlongzhang01@gmail.com>
Diff between spaa versions 0.2.2 dated 2016-06-13 and 0.2.5 dated 2025-01-08
spaa-0.2.2/spaa/R/add.col.R |only spaa-0.2.2/spaa/R/plotlowertri.R |only spaa-0.2.2/spaa/R/plotnetwork.R |only spaa-0.2.2/spaa/man/add.col.Rd |only spaa-0.2.2/spaa/man/plotlowertri.Rd |only spaa-0.2.2/spaa/man/plotnetwork.Rd |only spaa-0.2.5/spaa/DESCRIPTION | 8 - spaa-0.2.5/spaa/MD5 | 66 +++----- spaa-0.2.5/spaa/R/data2mat.R | 24 +-- spaa-0.2.5/spaa/R/deg2dec.R | 5 spaa-0.2.5/spaa/R/dist2list.R | 2 spaa-0.2.5/spaa/R/freq.calc.R | 27 +-- spaa-0.2.5/spaa/R/lab.mat.R | 1 spaa-0.2.5/spaa/R/lgeodist.R | 2 spaa-0.2.5/spaa/R/niche.overlap.R | 83 +++++----- spaa-0.2.5/spaa/R/niche.overlap.boot.R | 30 +-- spaa-0.2.5/spaa/R/niche.overlap.boot.pair.R | 41 ++--- spaa-0.2.5/spaa/R/niche.overlap.pair.R | 73 ++++----- spaa-0.2.5/spaa/R/niche.width.R | 76 ++++----- spaa-0.2.5/spaa/R/sp.assoc.R | 55 ++++-- spaa-0.2.5/spaa/R/sp.pair.R | 199 +++++++++++++++---------- spaa-0.2.5/spaa/R/sub.sp.matrix.R | 65 ++++---- spaa-0.2.5/spaa/README.md | 6 spaa-0.2.5/spaa/man/data2mat.Rd | 12 - spaa-0.2.5/spaa/man/datasample.Rd | 11 - spaa-0.2.5/spaa/man/freq.calc.Rd | 12 - spaa-0.2.5/spaa/man/niche.overlap.Rd | 13 - spaa-0.2.5/spaa/man/niche.overlap.boot.Rd | 41 ++--- spaa-0.2.5/spaa/man/niche.overlap.boot.pair.Rd | 29 +-- spaa-0.2.5/spaa/man/niche.overlap.pair.Rd | 15 - spaa-0.2.5/spaa/man/niche.width.Rd | 15 - spaa-0.2.5/spaa/man/sp.assoc.Rd | 51 ++---- spaa-0.2.5/spaa/man/sp.pair.Rd | 76 ++++----- spaa-0.2.5/spaa/man/spaa-package.Rd | 41 ----- spaa-0.2.5/spaa/man/splist.Rd | 10 - spaa-0.2.5/spaa/man/sub.sp.matrix.Rd | 21 +- spaa-0.2.5/spaa/man/testdata.Rd | 8 - 37 files changed, 550 insertions(+), 568 deletions(-)
Title: Simulate Data from State Space Models
Description: Provides a streamlined and user-friendly framework
for simulating data in state space models,
particularly when the number of subjects/units (n) exceeds one,
a scenario commonly encountered in social and behavioral sciences.
For an introduction to state space models in social and behavioral sciences,
refer to Chow, Ho, Hamaker, and Dolan (2010) <doi:10.1080/10705511003661553>.
Author: Ivan Jacob Agaloos Pesigan [aut, cre, cph]
Maintainer: Ivan Jacob Agaloos Pesigan <r.jeksterslab@gmail.com>
Diff between simStateSpace versions 1.2.3 dated 2024-11-26 and 1.2.7 dated 2025-01-08
simStateSpace-1.2.3/simStateSpace/tests/testthat/test-simStateSpace-sim-beta-n.R |only simStateSpace-1.2.3/simStateSpace/tests/testthat/test-simStateSpace-sim-phi-n.R |only simStateSpace-1.2.3/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-fixed.R |only simStateSpace-1.2.3/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-i-vary.R |only simStateSpace-1.2.3/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-lin-growth-i-vary.R |only simStateSpace-1.2.3/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-lin-growth.R |only simStateSpace-1.2.3/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-lin-sde-fixed.R |only simStateSpace-1.2.3/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-lin-sde-i-vary.R |only simStateSpace-1.2.3/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-ou-fixed.R |only simStateSpace-1.2.3/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-ou-i-vary.R |only simStateSpace-1.2.3/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-var-fixed.R |only simStateSpace-1.2.3/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-var-i-vary.R |only simStateSpace-1.2.3/simStateSpace/tests/testthat/test-simStateSpace-tests.R |only simStateSpace-1.2.7/simStateSpace/DESCRIPTION | 11 simStateSpace-1.2.7/simStateSpace/MD5 | 117 +++++++--- simStateSpace-1.2.7/simStateSpace/NAMESPACE | 11 simStateSpace-1.2.7/simStateSpace/NEWS.md | 7 simStateSpace-1.2.7/simStateSpace/R/linearAlgebra-vec-dot.R |only simStateSpace-1.2.7/simStateSpace/R/linearAlgebra-vech-dot.R |only simStateSpace-1.2.7/simStateSpace/R/nBootstrap-bc-ci-dot.R |only simStateSpace-1.2.7/simStateSpace/R/nBootstrap-bc-probs-dot.R |only simStateSpace-1.2.7/simStateSpace/R/nBootstrap-ci-format-dot.R |only simStateSpace-1.2.7/simStateSpace/R/nBootstrap-pc-ci-dot.R |only simStateSpace-1.2.7/simStateSpace/R/nBootstrap-pc-probs-dot.R |only simStateSpace-1.2.7/simStateSpace/R/nBootstrap-z0-dot.R |only simStateSpace-1.2.7/simStateSpace/R/nBootstrap-z1-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-coef-fit-dynr-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-dynr-data-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-dynr-dynamics-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-dynr-initial-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-dynr-measurement-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-dynr-noise-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-formula-lin-sde-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-formula-ou-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-formula-var-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-label-full-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-label-sym-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-lambda-label-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-methods-statespacepb.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ci-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-coef-dynr-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-fit-dynr-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-fixed-data-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-fixed-fork-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-fixed-prep-dynr-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-fixed-serial-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-fixed-socket-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-fixed.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-lin-sde-fixed-data-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-lin-sde-fixed-fork-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-lin-sde-fixed-prep-dynr-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-lin-sde-fixed-serial-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-lin-sde-fixed-socket-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-lin-sde-fixed.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-ou-fixed-data-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-ou-fixed-fork-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-ou-fixed-prep-dynr-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-ou-fixed-serial-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-ou-fixed-socket-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-ou-fixed.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-var-fixed-data-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-var-fixed-fork-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-var-fixed-prep-dynr-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-var-fixed-serial-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-var-fixed-socket-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-pb-ssm-var-fixed.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-vec-2-full-mat-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-vec-2-mat-dot.R |only simStateSpace-1.2.7/simStateSpace/R/simStateSpace-vec-2-sym-mat-dot.R |only simStateSpace-1.2.7/simStateSpace/build/partial.rdb |binary simStateSpace-1.2.7/simStateSpace/man/LinSDE2SSM.Rd | 4 simStateSpace-1.2.7/simStateSpace/man/PBSSMFixed.Rd |only simStateSpace-1.2.7/simStateSpace/man/PBSSMLinSDEFixed.Rd |only simStateSpace-1.2.7/simStateSpace/man/PBSSMOUFixed.Rd |only simStateSpace-1.2.7/simStateSpace/man/PBSSMVARFixed.Rd |only simStateSpace-1.2.7/simStateSpace/man/SimBetaN.Rd | 4 simStateSpace-1.2.7/simStateSpace/man/SimPhiN.Rd | 4 simStateSpace-1.2.7/simStateSpace/man/SimSSMFixed.Rd | 4 simStateSpace-1.2.7/simStateSpace/man/SimSSMIVary.Rd | 4 simStateSpace-1.2.7/simStateSpace/man/SimSSMLinGrowth.Rd | 4 simStateSpace-1.2.7/simStateSpace/man/SimSSMLinGrowthIVary.Rd | 8 simStateSpace-1.2.7/simStateSpace/man/SimSSMLinSDEFixed.Rd | 4 simStateSpace-1.2.7/simStateSpace/man/SimSSMLinSDEIVary.Rd | 4 simStateSpace-1.2.7/simStateSpace/man/SimSSMOUFixed.Rd | 4 simStateSpace-1.2.7/simStateSpace/man/SimSSMOUIVary.Rd | 4 simStateSpace-1.2.7/simStateSpace/man/SimSSMVARFixed.Rd | 4 simStateSpace-1.2.7/simStateSpace/man/SimSSMVARIVary.Rd | 4 simStateSpace-1.2.7/simStateSpace/man/TestPhi.Rd | 4 simStateSpace-1.2.7/simStateSpace/man/TestStability.Rd | 4 simStateSpace-1.2.7/simStateSpace/man/TestStationarity.Rd | 4 simStateSpace-1.2.7/simStateSpace/man/coef.statespacepb.Rd |only simStateSpace-1.2.7/simStateSpace/man/confint.statespacepb.Rd |only simStateSpace-1.2.7/simStateSpace/man/extract.Rd |only simStateSpace-1.2.7/simStateSpace/man/extract.statespacepb.Rd |only simStateSpace-1.2.7/simStateSpace/man/print.statespacepb.Rd |only simStateSpace-1.2.7/simStateSpace/man/summary.statespacepb.Rd |only simStateSpace-1.2.7/simStateSpace/man/vcov.statespacepb.Rd |only simStateSpace-1.2.7/simStateSpace/tests/testthat/test-simStateSpace.R |only 98 files changed, 176 insertions(+), 38 deletions(-)
Title: Score Matching Estimation by Automatic Differentiation
Description: Hyvärinen's score matching (Hyvärinen, 2005) <https://jmlr.org/papers/v6/hyvarinen05a.html> is a useful estimation technique when the normalising constant for a probability distribution is difficult to compute. This package implements score matching estimators using automatic differentiation in the 'CppAD' library <https://github.com/coin-or/CppAD> and is designed for quickly implementing score matching estimators for new models. Also available is general robustification (Windham, 1995) <https://www.jstor.org/stable/2346159>. Already in the package are estimators for directional distributions (Mardia, Kent and Laha, 2016) <doi:10.48550/arXiv.1604.08470> and the flexible Polynomially-Tilted Pairwise Interaction model for compositional data. The latter estimators perform well when there are zeros in the compositions (Scealy and Wood, 2023) <doi:10.1080/01621459.2021.2016422>, even many zeros (Scealy, Hingee, Kent, and Wood, 2024) <doi:10.1007/s11222-024-1 [...truncated...]
Author: Kassel Liam Hingee [aut, cre] ,
Janice Scealy [aut] ,
Bradley M. Bell [cph]
Maintainer: Kassel Liam Hingee <kassel.hingee@anu.edu.au>
Diff between scorematchingad versions 0.0.67 dated 2024-07-24 and 0.1.1 dated 2025-01-08
scorematchingad-0.0.67/scorematchingad/R/ADFun.R |only scorematchingad-0.0.67/scorematchingad/R/ADFun_builders.R |only scorematchingad-0.0.67/scorematchingad/R/buildsmdtape.R |only scorematchingad-0.0.67/scorematchingad/R/customlikelihood.R |only scorematchingad-0.0.67/scorematchingad/R/tapesmo.R |only scorematchingad-0.0.67/scorematchingad/inst/include/utils/approx.hpp |only scorematchingad-0.0.67/scorematchingad/man/ADFun.Rd |only scorematchingad-0.0.67/scorematchingad/man/buildsmdtape.Rd |only scorematchingad-0.0.67/scorematchingad/man/customll.Rd |only scorematchingad-0.0.67/scorematchingad/man/evalll.Rd |only scorematchingad-0.0.67/scorematchingad/man/moretapebuilders.Rd |only scorematchingad-0.0.67/scorematchingad/src/approxwrap.cpp |only scorematchingad-0.0.67/scorematchingad/src/approxwrap.h |only scorematchingad-0.0.67/scorematchingad/src/cppad_interface.cpp |only scorematchingad-0.0.67/scorematchingad/src/cppad_interface.h |only scorematchingad-0.0.67/scorematchingad/tests/testthat/test-customll.R |only scorematchingad-0.1.1/scorematchingad/DESCRIPTION | 16 scorematchingad-0.1.1/scorematchingad/MD5 | 189 ++++----- scorematchingad-0.1.1/scorematchingad/NAMESPACE | 26 - scorematchingad-0.1.1/scorematchingad/NEWS.md | 28 + scorematchingad-0.1.1/scorematchingad/R/Bingham.R | 4 scorematchingad-0.1.1/scorematchingad/R/FB.R | 2 scorematchingad-0.1.1/scorematchingad/R/RcppExports.R | 179 +++----- scorematchingad-0.1.1/scorematchingad/R/Rcpp_ADFun.R |only scorematchingad-0.1.1/scorematchingad/R/Rcpp_ADFun_print.R |only scorematchingad-0.1.1/scorematchingad/R/cppad_closed.R | 12 scorematchingad-0.1.1/scorematchingad/R/cppad_search.R | 15 scorematchingad-0.1.1/scorematchingad/R/cppad_search_SE.R | 10 scorematchingad-0.1.1/scorematchingad/R/evaltape.R | 14 scorematchingad-0.1.1/scorematchingad/R/init.R |only scorematchingad-0.1.1/scorematchingad/R/manifoldtransform.R | 12 scorematchingad-0.1.1/scorematchingad/R/microbiome.R | 4 scorematchingad-0.1.1/scorematchingad/R/ppi.R | 4 scorematchingad-0.1.1/scorematchingad/R/ppi_smvalues.R | 4 scorematchingad-0.1.1/scorematchingad/R/quadratictape_parts.R | 16 scorematchingad-0.1.1/scorematchingad/R/rppi.R | 2 scorematchingad-0.1.1/scorematchingad/R/scorematchingad-package.R | 7 scorematchingad-0.1.1/scorematchingad/R/simplex_bdryapprox.R | 4 scorematchingad-0.1.1/scorematchingad/R/smvalues.R | 16 scorematchingad-0.1.1/scorematchingad/R/tape_smd.R |only scorematchingad-0.1.1/scorematchingad/R/tape_uld.R |only scorematchingad-0.1.1/scorematchingad/R/tapell.R | 43 -- scorematchingad-0.1.1/scorematchingad/R/testquadratic.R | 49 +- scorematchingad-0.1.1/scorematchingad/R/vMF.R | 2 scorematchingad-0.1.1/scorematchingad/R/vMF_kappa.R | 2 scorematchingad-0.1.1/scorematchingad/build/partial.rdb |binary scorematchingad-0.1.1/scorematchingad/configure | 21 - scorematchingad-0.1.1/scorematchingad/configure.ac | 4 scorematchingad-0.1.1/scorematchingad/inst/cppad/include/cppad/CMakeLists.txt | 1 scorematchingad-0.1.1/scorematchingad/inst/cppad/include/cppad/utility/error_handler.hpp | 2 scorematchingad-0.1.1/scorematchingad/inst/cppad/include/cppad/utility/speed_test.hpp | 4 scorematchingad-0.1.1/scorematchingad/inst/demo_custom_uld.cpp |only scorematchingad-0.1.1/scorematchingad/inst/include/scorematchingad.h | 1 scorematchingad-0.1.1/scorematchingad/inst/include/utils/pADFun.h |only scorematchingad-0.1.1/scorematchingad/inst/include/utils/wrapas.hpp | 6 scorematchingad-0.1.1/scorematchingad/man/Bingham.Rd | 4 scorematchingad-0.1.1/scorematchingad/man/FB.Rd | 4 scorematchingad-0.1.1/scorematchingad/man/Rcpp_ADFun-class.Rd |only scorematchingad-0.1.1/scorematchingad/man/Windham.Rd | 3 scorematchingad-0.1.1/scorematchingad/man/Windham_populationinverse.Rd | 6 scorematchingad-0.1.1/scorematchingad/man/cppad_closed.Rd | 15 scorematchingad-0.1.1/scorematchingad/man/cppad_search.Rd | 13 scorematchingad-0.1.1/scorematchingad/man/dppi.Rd | 2 scorematchingad-0.1.1/scorematchingad/man/evaltape.Rd | 6 scorematchingad-0.1.1/scorematchingad/man/microbiome.Rd | 14 scorematchingad-0.1.1/scorematchingad/man/ppi.Rd | 4 scorematchingad-0.1.1/scorematchingad/man/ppi_param_tools.Rd | 4 scorematchingad-0.1.1/scorematchingad/man/ppi_robust.Rd | 2 scorematchingad-0.1.1/scorematchingad/man/print-Rcpp_ADFun.Rd |only scorematchingad-0.1.1/scorematchingad/man/quadratictape_parts.Rd | 8 scorematchingad-0.1.1/scorematchingad/man/rppi.Rd | 10 scorematchingad-0.1.1/scorematchingad/man/scorematchingad-package.Rd | 9 scorematchingad-0.1.1/scorematchingad/man/smvalues.Rd | 6 scorematchingad-0.1.1/scorematchingad/man/tape_Hessian.Rd |only scorematchingad-0.1.1/scorematchingad/man/tape_Jacobian.Rd |only scorematchingad-0.1.1/scorematchingad/man/tape_gradoffset.Rd |only scorematchingad-0.1.1/scorematchingad/man/tape_logJacdet.Rd |only scorematchingad-0.1.1/scorematchingad/man/tape_smd.Rd |only scorematchingad-0.1.1/scorematchingad/man/tape_swap.Rd |only scorematchingad-0.1.1/scorematchingad/man/tape_uld.Rd |only scorematchingad-0.1.1/scorematchingad/man/testquadratic.Rd | 27 - scorematchingad-0.1.1/scorematchingad/src/RcppExports.cpp | 204 +++++----- scorematchingad-0.1.1/scorematchingad/src/abort_recording.cpp |only scorematchingad-0.1.1/scorematchingad/src/approx.cpp |only scorematchingad-0.1.1/scorematchingad/src/approx.h |only scorematchingad-0.1.1/scorematchingad/src/error_handler.cpp |only scorematchingad-0.1.1/scorematchingad/src/fixdynamic.cpp |only scorematchingad-0.1.1/scorematchingad/src/fixdynamic.h |only scorematchingad-0.1.1/scorematchingad/src/pADFun.cpp |only scorematchingad-0.1.1/scorematchingad/src/pADFun_retape.cpp |only scorematchingad-0.1.1/scorematchingad/src/pADFun_retape.h |only scorematchingad-0.1.1/scorematchingad/src/tapell.cpp | 30 - scorematchingad-0.1.1/scorematchingad/src/tapell.h | 29 - scorematchingad-0.1.1/scorematchingad/src/tapesmd.cpp | 103 ++--- scorematchingad-0.1.1/scorematchingad/src/tapesmd.h | 27 - scorematchingad-0.1.1/scorematchingad/tests/testthat/test-ADFun.R | 12 scorematchingad-0.1.1/scorematchingad/tests/testthat/test-ADFun_builders.R | 12 scorematchingad-0.1.1/scorematchingad/tests/testthat/test-Bingham.R | 8 scorematchingad-0.1.1/scorematchingad/tests/testthat/test-FB.R | 14 scorematchingad-0.1.1/scorematchingad/tests/testthat/test-buildsmdtape-ppi-derivs.R | 58 +- scorematchingad-0.1.1/scorematchingad/tests/testthat/test-buildsmdtape-tapevalues.R | 30 - scorematchingad-0.1.1/scorematchingad/tests/testthat/test-closed-dirichlet.R | 12 scorematchingad-0.1.1/scorematchingad/tests/testthat/test-closed-ppi-Hclr.R | 6 scorematchingad-0.1.1/scorematchingad/tests/testthat/test-closed-ppi-sphere-simplex.R | 30 - scorematchingad-0.1.1/scorematchingad/tests/testthat/test-cppad_closed.R | 6 scorematchingad-0.1.1/scorematchingad/tests/testthat/test-cppad_search.R | 10 scorematchingad-0.1.1/scorematchingad/tests/testthat/test-error_handler.R |only scorematchingad-0.1.1/scorematchingad/tests/testthat/test-fixdynamic.R |only scorematchingad-0.1.1/scorematchingad/tests/testthat/test-manifolds.R | 25 - scorematchingad-0.1.1/scorematchingad/tests/testthat/test-ppi-llderivs.R | 42 +- scorematchingad-0.1.1/scorematchingad/tests/testthat/test-ppi-quadraticsmo.R | 38 - scorematchingad-0.1.1/scorematchingad/tests/testthat/test-ppi-sec2_3model_betap.R | 6 scorematchingad-0.1.1/scorematchingad/tests/testthat/test-quadtraticsmo_parts.R | 6 scorematchingad-0.1.1/scorematchingad/tests/testthat/test-reembed.R |only scorematchingad-0.1.1/scorematchingad/tests/testthat/test-tape_uld.R |only scorematchingad-0.1.1/scorematchingad/tests/testthat/test-tapell.R | 32 - scorematchingad-0.1.1/scorematchingad/tests/testthat/test-vMF.R | 4 scorematchingad-0.1.1/scorematchingad/tests/testthat/test-weights-cppad_simulated_weights.R | 30 - 118 files changed, 802 insertions(+), 808 deletions(-)
More information about scorematchingad at CRAN
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Title: Bayes Factors, Model Choice and Variable Selection in Linear
Models
Description: Bayes factors and posterior probabilities in Linear models,
aimed at provide a formal Bayesian answer to testing and variable
selection problems.
Author: Gonzalo Garcia-Donato [aut, cre],
Anabel Forte [aut],
Carlos Vergara-Hernandez [ctb]
Maintainer: Gonzalo Garcia-Donato <gonzalo.garciadonato@uclm.es>
Diff between BayesVarSel versions 2.2.5 dated 2023-03-08 and 2.4.5 dated 2025-01-08
DESCRIPTION | 8 MD5 | 14 NEWS.md | 6 R/GibbsBvs.R | 6 src/main.c | 813 +++++++++++++++++++++++++++--------------------------- src/mainGibbs.c | 825 +++++++++++++++++++++++++++---------------------------- src/mainGibbsF.c | 182 ++++++------ src/priorprob.c | 4 8 files changed, 936 insertions(+), 922 deletions(-)
Title: Testing for Structural Breaks under Long Memory and Testing for
Changes in Persistence
Description: Test procedures and break point estimators for persistent processes that exhibit structural breaks in mean or in persistence.
On the one hand the package contains the most popular approaches for testing whether a time series exhibits a break in persistence from I(0) to I(1) or vice versa, such as those of Busetti and Taylor (2004) and Leybourne, Kim, and Taylor (2007).
The approach by Martins and Rodrigues (2014), which allows to detect changes from I(d1) to I(d2) with d1 and d2 being non-integers, is included as well.
In case the tests reject the null of constant persistence, various breakpoint estimators are available to detect the point of the break as well as the order of integration in the two regimes.
On the other hand the package contains the most popular approaches to test for a change-in-mean of a long-memory time series, which were recently reviewed by Wenger, Leschinski, and Sibbertsen (2018).
These include memory robust versions of the CUSUM, sup-Wald, and Wilcoxon type tes [...truncated...]
Author: Janis Becker [aut],
Kai Wenger [aut, cre]
Maintainer: Kai Wenger <kai.wenger@gmx.de>
Diff between memochange versions 1.1.1 dated 2020-07-26 and 1.1.2 dated 2025-01-08
DESCRIPTION | 15 MD5 | 24 - README.md | 1 build/vignette.rds |binary inst/CITATION | 2 inst/doc/Change_in_Mean.R | 198 ++++---- inst/doc/Change_in_Mean.Rmd | 6 inst/doc/Change_in_Mean.html | 874 ++++++++++++++++++++++++------------- inst/doc/break_in_persistence.R | 30 - inst/doc/break_in_persistence.Rmd | 4 inst/doc/break_in_persistence.html | 723 ++++++++++++++++++++---------- vignettes/Change_in_Mean.Rmd | 6 vignettes/break_in_persistence.Rmd | 4 13 files changed, 1197 insertions(+), 690 deletions(-)
Title: Integration to 'Apache' 'Arrow'
Description: 'Apache' 'Arrow' <https://arrow.apache.org/> is a cross-language
development platform for in-memory data. It specifies a standardized
language-independent columnar memory format for flat and hierarchical data,
organized for efficient analytic operations on modern hardware. This
package provides an interface to the 'Arrow C++' library.
Author: Neal Richardson [aut],
Ian Cook [aut],
Nic Crane [aut],
Dewey Dunnington [aut] ,
Romain Francois [aut] ,
Jonathan Keane [aut, cre],
Dragoș Moldovan-Gruenfeld [aut],
Jeroen Ooms [aut],
Jacob Wujciak-Jens [aut],
Javier Luraschi [ctb],
Karl Dunkle Werner [...truncated...]
Maintainer: Jonathan Keane <jkeane@gmail.com>
Diff between arrow versions 18.1.0 dated 2024-12-05 and 18.1.0.1 dated 2025-01-08
DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- NEWS.md | 4 ++++ tools/cpp/cmake_modules/ThirdpartyToolchain.cmake | 17 ++++++++++++++++- tools/cpp/cmake_modules/thrift-cstdint.patch |only 5 files changed, 28 insertions(+), 8 deletions(-)
Title: Tidy Quantitative Financial Analysis
Description: Bringing business and financial analysis to the 'tidyverse'. The 'tidyquant'
package provides a convenient wrapper to various 'xts', 'zoo', 'quantmod', 'TTR'
and 'PerformanceAnalytics' package
functions and returns the objects in the tidy 'tibble' format. The main
advantage is being able to use quantitative functions with the 'tidyverse'
functions including 'purrr', 'dplyr', 'tidyr', 'ggplot2', 'lubridate', etc. See
the 'tidyquant' website for more information, documentation and examples.
Author: Matt Dancho [aut, cre],
Davis Vaughan [aut]
Maintainer: Matt Dancho <mdancho@business-science.io>
Diff between tidyquant versions 1.0.9 dated 2024-09-02 and 1.0.10 dated 2025-01-08
tidyquant-1.0.10/tidyquant/DESCRIPTION | 15 +-- tidyquant-1.0.10/tidyquant/MD5 | 48 +++------- tidyquant-1.0.10/tidyquant/NAMESPACE | 2 tidyquant-1.0.10/tidyquant/NEWS.md | 4 tidyquant-1.0.10/tidyquant/R/tidyquant-package.R | 2 tidyquant-1.0.10/tidyquant/R/tq_get.R | 6 - tidyquant-1.0.10/tidyquant/R/tq_stock_list.R | 4 tidyquant-1.0.10/tidyquant/build/vignette.rds |binary tidyquant-1.0.10/tidyquant/inst/doc/TQ06-excel-in-r.html | 2 tidyquant-1.0.10/tidyquant/man/tq_get.Rd | 6 - tidyquant-1.0.10/tidyquant/vignettes/temp |only tidyquant-1.0.9/tidyquant/inst/doc/TQ00-introduction-to-tidyquant.R |only tidyquant-1.0.9/tidyquant/inst/doc/TQ00-introduction-to-tidyquant.Rmd |only tidyquant-1.0.9/tidyquant/inst/doc/TQ00-introduction-to-tidyquant.html |only tidyquant-1.0.9/tidyquant/inst/doc/TQ01-core-functions-in-tidyquant.R |only tidyquant-1.0.9/tidyquant/inst/doc/TQ01-core-functions-in-tidyquant.Rmd |only tidyquant-1.0.9/tidyquant/inst/doc/TQ01-core-functions-in-tidyquant.html |only tidyquant-1.0.9/tidyquant/inst/doc/TQ02-quant-integrations-in-tidyquant.R |only tidyquant-1.0.9/tidyquant/inst/doc/TQ02-quant-integrations-in-tidyquant.Rmd |only tidyquant-1.0.9/tidyquant/inst/doc/TQ02-quant-integrations-in-tidyquant.html |only tidyquant-1.0.9/tidyquant/inst/doc/TQ03-scaling-and-modeling-with-tidyquant.R |only tidyquant-1.0.9/tidyquant/inst/doc/TQ03-scaling-and-modeling-with-tidyquant.Rmd |only tidyquant-1.0.9/tidyquant/inst/doc/TQ03-scaling-and-modeling-with-tidyquant.html |only tidyquant-1.0.9/tidyquant/inst/doc/TQ04-charting-with-tidyquant.R |only tidyquant-1.0.9/tidyquant/inst/doc/TQ04-charting-with-tidyquant.Rmd |only tidyquant-1.0.9/tidyquant/inst/doc/TQ04-charting-with-tidyquant.html |only tidyquant-1.0.9/tidyquant/inst/doc/TQ05-performance-analysis-with-tidyquant.R |only tidyquant-1.0.9/tidyquant/inst/doc/TQ05-performance-analysis-with-tidyquant.Rmd |only tidyquant-1.0.9/tidyquant/inst/doc/TQ05-performance-analysis-with-tidyquant.html |only tidyquant-1.0.9/tidyquant/vignettes/TQ00-introduction-to-tidyquant.Rmd |only tidyquant-1.0.9/tidyquant/vignettes/TQ01-core-functions-in-tidyquant.Rmd |only tidyquant-1.0.9/tidyquant/vignettes/TQ02-quant-integrations-in-tidyquant.Rmd |only tidyquant-1.0.9/tidyquant/vignettes/TQ03-scaling-and-modeling-with-tidyquant.Rmd |only tidyquant-1.0.9/tidyquant/vignettes/TQ04-charting-with-tidyquant.Rmd |only tidyquant-1.0.9/tidyquant/vignettes/TQ05-performance-analysis-with-tidyquant.Rmd |only 35 files changed, 42 insertions(+), 47 deletions(-)
Title: Spring Phenological Prediction
Description: Predicts the occurrence times (in day-of-year) of spring phenological events. Three methods, including the accumulated degree days (ADD) method, the accumulated days transferred to a standardized temperature (ADTS) method, and the accumulated developmental progress (ADP) method, were used. See Shi et al. (2017a) <doi:10.1016/j.agrformet.2017.04.001> and Shi et al. (2017b) <doi:10.1093/aesa/sax063> for details.
Author: Peijian Shi [aut, cre],
Zhenghong Chen [aut],
Brady K. Quinn [aut]
Maintainer: Peijian Shi <pjshi@njfu.edu.cn>
Diff between spphpr versions 0.1.4 dated 2024-12-13 and 1.0.0 dated 2025-01-08
spphpr-0.1.4/spphpr/data/BJMDT.rda |only spphpr-0.1.4/spphpr/man/BJMDT.Rd |only spphpr-1.0.0/spphpr/DESCRIPTION | 10 ++--- spphpr-1.0.0/spphpr/MD5 | 32 ++++++++-------- spphpr-1.0.0/spphpr/R/ADD.R | 6 +-- spphpr-1.0.0/spphpr/R/ADP.R | 4 +- spphpr-1.0.0/spphpr/R/ADTS.R | 10 ++--- spphpr-1.0.0/spphpr/build/partial.rdb |binary spphpr-1.0.0/spphpr/data/BJDAT.rda |only spphpr-1.0.0/spphpr/man/ADD.Rd | 46 +++++++++++------------ spphpr-1.0.0/spphpr/man/ADP.Rd | 68 +++++++++++++++++----------------- spphpr-1.0.0/spphpr/man/ADTS.Rd | 40 ++++++++++---------- spphpr-1.0.0/spphpr/man/BJDAT.Rd |only spphpr-1.0.0/spphpr/man/apricotFFD.Rd | 13 +++--- spphpr-1.0.0/spphpr/man/predADD.Rd | 22 +++++------ spphpr-1.0.0/spphpr/man/predADP.Rd | 32 ++++++++-------- spphpr-1.0.0/spphpr/man/predADTS.Rd | 32 ++++++++-------- spphpr-1.0.0/spphpr/man/spphpr.Rd | 4 +- spphpr-1.0.0/spphpr/man/toDOY.Rd | 14 +++---- 19 files changed, 167 insertions(+), 166 deletions(-)
Title: DBI Connector to Presto
Description: Implements a 'DBI' compliant interface to Presto. Presto is
an open source distributed SQL query engine for running interactive
analytic queries against data sources of all sizes ranging from
gigabytes to petabytes: <https://prestodb.io/>.
Author: Onur Ismail Filiz [aut],
Sergey Goder [aut],
Jarod G.R. Meng [aut, cre],
Thomas J. Leeper [ctb],
John Myles White [ctb]
Maintainer: Jarod G.R. Meng <jarodm@fb.com>
Diff between RPresto versions 1.4.6 dated 2023-10-31 and 1.4.7 dated 2025-01-08
RPresto-1.4.6/RPresto/tests/testthat/credentials.dcf |only RPresto-1.4.6/RPresto/tests/testthat/utilities.R |only RPresto-1.4.7/RPresto/DESCRIPTION | 10 RPresto-1.4.7/RPresto/MD5 | 189 ++++---- RPresto-1.4.7/RPresto/NAMESPACE | 1 RPresto-1.4.7/RPresto/NEWS.md | 9 RPresto-1.4.7/RPresto/R/PrestoQuery.R | 14 RPresto-1.4.7/RPresto/R/cte.R | 14 RPresto-1.4.7/RPresto/R/dbAppendTable.R | 1 RPresto-1.4.7/RPresto/R/dbConnect.R | 4 RPresto-1.4.7/RPresto/R/dbCreateTable.R | 1 RPresto-1.4.7/RPresto/R/dbCreateTableAs.R | 2 RPresto-1.4.7/RPresto/R/dbDisconnect.R | 2 RPresto-1.4.7/RPresto/R/dbExistsTable.R | 4 RPresto-1.4.7/RPresto/R/dbFetch.R | 2 RPresto-1.4.7/RPresto/R/dbListFields.R | 1 RPresto-1.4.7/RPresto/R/dbQuoteIdentifier.R | 58 ++ RPresto-1.4.7/RPresto/R/dbQuoteLiteral.R | 1 RPresto-1.4.7/RPresto/R/dbWriteTable.R | 6 RPresto-1.4.7/RPresto/R/dbplyr-sql.R | 4 RPresto-1.4.7/RPresto/R/dbplyr-src.R | 57 ++ RPresto-1.4.7/RPresto/R/default.R | 2 RPresto-1.4.7/RPresto/R/presto.field.R | 27 + RPresto-1.4.7/RPresto/R/presto.field_utilities.R | 1 RPresto-1.4.7/RPresto/R/sqlCreateTableAs.R | 12 RPresto-1.4.7/RPresto/README.md | 16 RPresto-1.4.7/RPresto/build/vignette.rds |binary RPresto-1.4.7/RPresto/inst/doc/common-table-expressions.R | 2 RPresto-1.4.7/RPresto/inst/doc/common-table-expressions.html | 45 -- RPresto-1.4.7/RPresto/inst/doc/complex-types.R | 2 RPresto-1.4.7/RPresto/inst/doc/complex-types.html | 6 RPresto-1.4.7/RPresto/inst/doc/primitive-types.R | 4 RPresto-1.4.7/RPresto/inst/doc/primitive-types.html | 16 RPresto-1.4.7/RPresto/inst/docker-compose.yml |only RPresto-1.4.7/RPresto/inst/prestodb_presto |only RPresto-1.4.7/RPresto/inst/trinodb_trino |only RPresto-1.4.7/RPresto/man/Presto.Rd | 4 RPresto-1.4.7/RPresto/man/PrestoConnection-class.Rd | 16 RPresto-1.4.7/RPresto/man/dbCreateTableAs.Rd | 11 RPresto-1.4.7/RPresto/man/dbplyr-sql.Rd | 6 RPresto-1.4.7/RPresto/man/dplyr_source_function_implementations.Rd | 14 RPresto-1.4.7/RPresto/man/presto_has_default.Rd | 2 RPresto-1.4.7/RPresto/man/sqlCreateTableAs.Rd | 6 RPresto-1.4.7/RPresto/tests/testthat/helper-live_connection.R |only RPresto-1.4.7/RPresto/tests/testthat/helper-mock_connection.R |only RPresto-1.4.7/RPresto/tests/testthat/helper-mock_httr.R |only RPresto-1.4.7/RPresto/tests/testthat/helper-test_data.R |only RPresto-1.4.7/RPresto/tests/testthat/helper-test_helper_functions.R |only RPresto-1.4.7/RPresto/tests/testthat/setup.R |only RPresto-1.4.7/RPresto/tests/testthat/test-PrestoQuery.R | 2 RPresto-1.4.7/RPresto/tests/testthat/test-add_chunk.R | 2 RPresto-1.4.7/RPresto/tests/testthat/test-bigint_handling.R | 4 RPresto-1.4.7/RPresto/tests/testthat/test-check.status.code.R | 2 RPresto-1.4.7/RPresto/tests/testthat/test-copy_to.src_presto.R | 26 - RPresto-1.4.7/RPresto/tests/testthat/test-cte.R | 28 - RPresto-1.4.7/RPresto/tests/testthat/test-data_types.R | 10 RPresto-1.4.7/RPresto/tests/testthat/test-dbAppendTable.R | 6 RPresto-1.4.7/RPresto/tests/testthat/test-dbClearResult.R | 4 RPresto-1.4.7/RPresto/tests/testthat/test-dbCreateTable.R | 4 RPresto-1.4.7/RPresto/tests/testthat/test-dbCreateTableAs.R | 4 RPresto-1.4.7/RPresto/tests/testthat/test-dbDataType.R | 2 RPresto-1.4.7/RPresto/tests/testthat/test-dbDisconnect.R | 4 RPresto-1.4.7/RPresto/tests/testthat/test-dbExecute.R | 14 RPresto-1.4.7/RPresto/tests/testthat/test-dbExistsTable.R | 4 RPresto-1.4.7/RPresto/tests/testthat/test-dbFetch.R | 4 RPresto-1.4.7/RPresto/tests/testthat/test-dbGetInfo.R | 4 RPresto-1.4.7/RPresto/tests/testthat/test-dbGetQuery.R | 4 RPresto-1.4.7/RPresto/tests/testthat/test-dbGetRowCount.R | 4 RPresto-1.4.7/RPresto/tests/testthat/test-dbGetStatement.R | 4 RPresto-1.4.7/RPresto/tests/testthat/test-dbHasCompleted.R | 4 RPresto-1.4.7/RPresto/tests/testthat/test-dbIsValid.R | 6 RPresto-1.4.7/RPresto/tests/testthat/test-dbListFields.R | 24 - 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Title: 'Ollama' Language Models
Description: An interface to easily run local language models with 'Ollama' <https://ollama.com> server
and API endpoints (see <https://github.com/ollama/ollama/blob/main/docs/api.md> for details). It lets
you run open-source large language models locally on your machine.
Author: Hause Lin [aut, cre, cph] ,
Tawab Safi [aut, ctb]
Maintainer: Hause Lin <hauselin@gmail.com>
Diff between ollamar versions 1.2.1 dated 2024-08-25 and 1.2.2 dated 2025-01-08
DESCRIPTION | 9 MD5 | 79 +++--- NEWS.md | 15 - R/ollama.R | 50 ++- R/scratch.R | 18 - R/utils.R | 75 +++++ README.md | 433 +++------------------------------- build |only inst/doc |only man/chat.Rd | 9 man/copy.Rd | 2 man/create.Rd | 2 man/embed.Rd | 2 man/embeddings.Rd | 2 man/figures |only man/generate.Rd | 7 man/get_tool_calls.Rd |only man/list_models.Rd | 2 man/model_avail.Rd | 2 man/ohelp.Rd | 2 man/ps.Rd | 2 man/pull.Rd | 2 man/push.Rd | 2 man/resp_process.Rd | 11 man/show.Rd | 2 man/test_connection.Rd | 10 tests/testthat/test-chat.R | 156 +++++++++++- tests/testthat/test-copy.R | 2 tests/testthat/test-create.R | 2 tests/testthat/test-delete.R | 2 tests/testthat/test-embed.R | 2 tests/testthat/test-embeddings.R | 2 tests/testthat/test-generate.R | 40 ++- tests/testthat/test-list_models.R | 2 tests/testthat/test-model_avail.R | 2 tests/testthat/test-ps.R | 2 tests/testthat/test-pull.R | 2 tests/testthat/test-push.R | 2 tests/testthat/test-show.R | 2 tests/testthat/test-test_connection.R | 13 - tests/testthat/test-utils.R | 2 vignettes |only 42 files changed, 448 insertions(+), 523 deletions(-)
Title: Estimate Gaussian and Student's t Mixture Vector Autoregressive
Models
Description: Unconstrained and constrained maximum likelihood estimation of structural and reduced form
Gaussian mixture vector autoregressive, Student's t mixture vector autoregressive, and Gaussian and Student's t
mixture vector autoregressive models, quantile residual tests, graphical diagnostics,
simulations, forecasting, and estimation of generalized impulse response function and generalized
forecast error variance decomposition.
Leena Kalliovirta, Mika Meitz, Pentti Saikkonen (2016) <doi:10.1016/j.jeconom.2016.02.012>,
Savi Virolainen (2025) <doi:10.1080/07350015.2024.2322090>,
Savi Virolainen (2022) <doi:10.48550/arXiv.2109.13648>.
Author: Savi Virolainen [aut, cre]
Maintainer: Savi Virolainen <savi.virolainen@helsinki.fi>
Diff between gmvarkit versions 2.1.3 dated 2024-12-04 and 2.1.4 dated 2025-01-08
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Title: Bayesian Estimation and Forecasting of Age-Specific Rates
Description: Fast Bayesian estimation and forecasting of age-specific
rates, probabilities, and means, based on 'Template Model Builder'.
Author: John Bryant [aut, cre],
Junni Zhang [aut],
Bayesian Demography Limited [cph]
Maintainer: John Bryant <john@bayesiandemography.com>
Diff between bage versions 0.7.4 dated 2024-08-28 and 0.9.0 dated 2025-01-08
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Title: Interactive Graphics for Portfolio Data
Description: Creates an interactive graphics
interface to visualize backtest results of different financial
instruments, such as equities, futures, and credit default swaps.
The package does not run backtests on the given data set but
displays a graphical explanation of the backtest results. Users can
look at backtest graphics for different instruments, investment
strategies, and portfolios. Summary statistics of different
portfolio holdings are shown in the left panel, and interactive
plots of profit and loss (P&L), net market value (NMV) and
gross market value (GMV) are displayed in the right panel.
Author: Yanrong Song [aut, cre],
Zijie Zhu [aut],
David Kane [aut],
Ziqi Lu [aut],
Karan Tibrewal [aut],
Fan Zhang [aut]
Maintainer: Yanrong Song <yrsong129@gmail.com>
Diff between backtestGraphics versions 0.1.7 dated 2024-12-20 and 0.1.8 dated 2025-01-08
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More information about backtestGraphics at CRAN
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