Title: Minimal R/Shiny Interface to JavaScript Library 'ECharts'
Description: Deliver the full functionality of 'ECharts' with minimal overhead. 'echarty' users build R lists for 'ECharts' API. Lean set of powerful commands.
Author: Larry Helgason [aut, cre]
Maintainer: Larry Helgason <larry@helgasoft.com>
Diff between echarty versions 1.6.4 dated 2024-06-04 and 1.6.5 dated 2025-01-10
echarty-1.6.4/echarty/R/examples.R |only echarty-1.6.4/echarty/man/ec.examples.Rd |only echarty-1.6.5/echarty/DESCRIPTION | 20 echarty-1.6.5/echarty/MD5 | 61 +- echarty-1.6.5/echarty/NAMESPACE | 1 echarty-1.6.5/echarty/NEWS.md | 428 +++++++++--------- echarty-1.6.5/echarty/R/echarty.R | 300 ++++++------ echarty-1.6.5/echarty/R/util.R | 285 +++++++---- echarty-1.6.5/echarty/build/vignette.rds |binary echarty-1.6.5/echarty/demo/00Index | 1 echarty-1.6.5/echarty/demo/examples.R |only echarty-1.6.5/echarty/inst/doc/echarty.R | 2 echarty-1.6.5/echarty/inst/doc/echarty.Rmd | 120 +++-- echarty-1.6.5/echarty/inst/doc/echarty.html | 158 +++++- echarty-1.6.5/echarty/inst/htmlwidgets/echarty.js | 6 echarty-1.6.5/echarty/inst/js/echarts.min.js | 4 echarty-1.6.5/echarty/man/Introduction.Rd | 59 +- echarty-1.6.5/echarty/man/ec.clmn.Rd | 22 echarty-1.6.5/echarty/man/ec.data.Rd | 8 echarty-1.6.5/echarty/man/ec.fromJson.Rd | 9 echarty-1.6.5/echarty/man/ec.init.Rd | 50 +- echarty-1.6.5/echarty/man/ec.inspect.Rd | 6 echarty-1.6.5/echarty/man/ec.plugjs.Rd | 18 echarty-1.6.5/echarty/man/ec.upd.Rd | 2 echarty-1.6.5/echarty/man/ec.util.Rd | 270 ++++++----- echarty-1.6.5/echarty/man/ecr.ebars.Rd | 43 + echarty-1.6.5/echarty/man/ecs.exec.Rd | 4 echarty-1.6.5/echarty/tests/testthat/test-ec.clmn.R | 11 echarty-1.6.5/echarty/tests/testthat/test-ec.util.R | 119 +++-- echarty-1.6.5/echarty/tests/testthat/test-other.R | 82 ++- echarty-1.6.5/echarty/tests/testthat/test-presets.R | 60 +- echarty-1.6.5/echarty/tests/testthat/test-renderers.R | 20 echarty-1.6.5/echarty/vignettes/echarty.Rmd | 120 +++-- 33 files changed, 1350 insertions(+), 939 deletions(-)
Title: Analysis and Visualization of Archaeological Count Data
Description: An easy way to examine archaeological count data. This
package provides several tests and measures of diversity:
heterogeneity and evenness (Brillouin, Shannon, Simpson, etc.),
richness and rarefaction (Chao1, Chao2, ACE, ICE, etc.), turnover and
similarity (Brainerd-Robinson, etc.). It allows to easily visualize
count data and statistical thresholds: rank vs abundance plots,
heatmaps, Ford (1962) and Bertin (1977) diagrams, etc.
Author: Nicolas Frerebeau [aut, cre] ,
Brice Lebrun [ctb] ,
Matthew Peeples [ctb] ,
Ben Marwick [ctb] ,
Anne Philippe [ctb] ,
Jean-Baptiste Fourvel [ctb] ,
Universite Bordeaux Montaigne [fnd],
CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between tabula versions 3.1.1 dated 2024-09-05 and 3.2.0 dated 2025-01-10
DESCRIPTION | 33 - MD5 | 137 ++--- NAMESPACE | 1 NEWS.md | 17 R/AllGenerics.R | 76 +- R/diversity_alpha.R | 84 +-- R/occurrence.R | 83 ++- R/plot_diceleraas.R | 3 R/plot_diversity.R | 30 - R/plot_matrix.R | 18 R/plot_rank.R | 8 R/rarefaction.R | 6 R/similarity.R | 104 +-- R/statistics.R | 8 R/tabula-deprecated.R | 56 -- R/tabula-internal.R | 5 R/tabula-package.R | 9 R/validate.R | 4 R/zzz.R | 4 README.md | 22 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 2 inst/doc/alpha.R | 2 inst/doc/alpha.html | 12 inst/doc/beta.R | 4 inst/doc/beta.Rmd | 11 inst/doc/beta.html | 36 - inst/examples/ex-occurrence.R | 11 inst/examples/ex-similarity.R | 11 inst/po |only inst/tinytest/_tinysnapshot/plot_dice_leraas.svg | 2 inst/tinytest/_tinysnapshot/plot_mtx_count.svg | 526 +++++++++---------- inst/tinytest/_tinysnapshot/plot_mtx_notfixed.svg | 496 +++++++++--------- inst/tinytest/_tinysnapshot/plot_mtx_occ.svg | 20 inst/tinytest/_tinysnapshot/plot_mtx_prop1.svg | 532 ++++++++++---------- inst/tinytest/_tinysnapshot/plot_mtx_prop2.svg | 532 ++++++++++---------- inst/tinytest/_tinysnapshot/plot_mtx_sim.svg | 14 inst/tinytest/_tinysnapshot/plot_spot_occ.svg | 20 inst/tinytest/_tinysnapshot/plot_spot_plain.svg | 18 inst/tinytest/_tinysnapshot/plot_spot_prop1.svg | 16 inst/tinytest/_tinysnapshot/plot_spot_prop2.svg | 14 inst/tinytest/_tinysnapshot/plot_spot_ring.svg | 18 inst/tinytest/_tinysnapshot/plot_spot_sim_plain.svg | 14 inst/tinytest/_tinysnapshot/plot_spot_sim_ring.svg | 14 inst/tinytest/test_diversity.R | 2 inst/tinytest/test_index.R | 7 inst/tinytest/test_occurrence.R | 7 inst/tinytest/test_plots.R | 2 inst/tinytest/test_rarefaction.R | 2 inst/tinytest/test_richness.R | 2 inst/tinytest/test_similarity.R | 4 inst/tinytest/test_statistics.R | 3 man/figures/README-ford-1.png |binary man/figures/README-occurrence-1.png |binary man/figures/README-sample-size-1.png |binary man/figures/README-sample-size-2.png |binary man/index_binomial.Rd | 4 man/occurrence.Rd | 29 - man/plot_diversity.Rd | 4 man/plot_rank.Rd | 6 man/plot_rarefaction.Rd | 4 man/plot_spot.Rd | 2 man/profiles.Rd | 6 man/she.Rd | 6 man/similarity.Rd | 21 man/tabula-deprecated.Rd | 11 man/tabula-package.Rd | 13 po |only vignettes/beta.Rmd | 11 70 files changed, 1599 insertions(+), 1580 deletions(-)
Title: Nanosecond-Resolution Time Support for R
Description: Full 64-bit resolution date and time functionality with
nanosecond granularity is provided, with easy transition to and from
the standard 'POSIXct' type. Three additional classes offer interval,
period and duration functionality for nanosecond-resolution timestamps.
Author: Dirk Eddelbuettel [aut, cre] ,
Leonardo Silvestri [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between nanotime versions 0.3.10 dated 2024-09-16 and 0.3.11 dated 2025-01-10
ChangeLog | 20 ++++++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/nanotime.R | 7 ++++++- build/vignette.rds |binary inst/NEWS.Rd | 9 +++++++++ inst/doc/nanotime-introduction.pdf |binary src/period.cpp | 27 +++++++++++++++++++-------- 8 files changed, 65 insertions(+), 20 deletions(-)
Title: Harrell Miscellaneous
Description: Contains many functions useful for data
analysis, high-level graphics, utility operations, functions for
computing sample size and power, simulation, importing and annotating datasets,
imputing missing values, advanced table making, variable clustering,
character string manipulation, conversion of R objects to LaTeX and html code,
recoding variables, caching, simplified parallel computing, encrypting and decrypting data using a safe workflow, general moving window statistical estimation, and assistance in interpreting principal component analysis.
Author: Frank E Harrell Jr [aut, cre] ,
Charles Dupont [ctb]
Maintainer: Frank E Harrell Jr <fh@fharrell.com>
Diff between Hmisc versions 5.2-1 dated 2024-12-02 and 5.2-2 dated 2025-01-10
DESCRIPTION | 8 +-- MD5 | 30 +++++++------ NAMESPACE | 2 NEWS | 6 ++ R/cut2.s | 99 +++++++++++++++++++++++++++++++++++++++++++++- R/num.intercepts.s | 5 ++ R/ordGroupBoot.r |only R/plsmo.s | 4 - R/popower.s | 8 ++- R/xy.group.s | 29 +++++++------ inst/tests/ordGroupBoot.r |only man/cut2.Rd | 23 +++++++++- man/num.intercepts.Rd | 2 man/ordGroupBoot.Rd |only man/plsmo.Rd | 6 +- man/xy.group.Rd | 10 ++-- src/cutgn.f90 |only src/init.c | 2 18 files changed, 187 insertions(+), 47 deletions(-)
Title: Retrieve and Plot Google n-Gram Data
Description: Retrieve and plot word frequencies through time from the "Google
Ngram Viewer" <https://books.google.com/ngrams>.
Author: Sean Carmody [aut, cre, cph]
Maintainer: Sean Carmody <seancarmody@gmail.com>
Diff between ngramr versions 1.9.3 dated 2023-01-16 and 1.10.0 dated 2025-01-10
ngramr-1.10.0/ngramr/DESCRIPTION | 10 ++++---- ngramr-1.10.0/ngramr/MD5 | 25 ++++++++++------------ ngramr-1.10.0/ngramr/NEWS.md | 7 ++++++ ngramr-1.10.0/ngramr/R/data.R | 2 - ngramr-1.10.0/ngramr/R/ggram.R | 7 ------ ngramr-1.10.0/ngramr/R/ngram.R | 25 ++++++---------------- ngramr-1.10.0/ngramr/R/ngramr-package.R | 9 ++++--- ngramr-1.10.0/ngramr/R/sysdata.rda |binary ngramr-1.10.0/ngramr/man/corpuses.Rd | 2 - ngramr-1.10.0/ngramr/man/ggram.Rd | 4 --- ngramr-1.10.0/ngramr/man/ngram.Rd | 10 +------- ngramr-1.10.0/ngramr/man/ngramr.Rd | 10 ++++---- ngramr-1.10.0/ngramr/tests/testthat/test-ngramr.R | 6 ++--- ngramr-1.9.3/ngramr/R/add_count.R |only 14 files changed, 49 insertions(+), 68 deletions(-)
Title: Simulation of Inter-Related Genomic Datasets
Description: Generates three inter-related genomic datasets: methylation, gene expression and protein expression having user specified cluster patterns. The simulation utilizes the realistic inter- and intra- relationships from real DNA methylation, mRNA expression and protein expression data from the TCGA ovarian cancer study, Chalise (2016) <doi:10.1016/j.cmpb.2016.02.011>.
Author: Prabhakar Chalise [aut, cre],
Rama Raghavan [aut],
Brooke Fridley [aut]
Maintainer: Prabhakar Chalise <pchalise@kumc.edu>
Diff between InterSIM versions 2.2.0 dated 2018-07-16 and 2.3.0 dated 2025-01-10
DESCRIPTION | 24 ++++++++++++++++++------ MD5 | 8 ++++---- R/InterSIM.R | 4 ++-- man/InterSIM-package.Rd | 7 ++++--- man/InterSIM.Rd | 6 ++++-- 5 files changed, 32 insertions(+), 17 deletions(-)
Title: Parsing and Evaluation Tools that Provide More Details than the
Default
Description: Parsing and evaluation tools that make it easy to recreate
the command line behaviour of R.
Author: Hadley Wickham [aut, cre],
Yihui Xie [aut] ,
Michael Lawrence [ctb],
Thomas Kluyver [ctb],
Jeroen Ooms [ctb],
Barret Schloerke [ctb],
Adam Ryczkowski [ctb],
Hiroaki Yutani [ctb],
Michel Lang [ctb],
Karolis Koncevicius [ctb],
Posit Software, PBC [cph, [...truncated...]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between evaluate versions 1.0.1 dated 2024-10-10 and 1.0.3 dated 2025-01-10
DESCRIPTION | 10 ++--- MD5 | 32 ++++++++++++---- NEWS.md | 8 +++- R/conditions.R | 3 + R/evaluate.R | 8 +++- tests/testthat/_snaps/conditions |only tests/testthat/_snaps/conditions.md | 4 +- tests/testthat/helper.R | 17 ++++++++ tests/testthat/ressources |only tests/testthat/test-conditions.R | 71 ++++++++++++++++++++++++++++++++++-- 10 files changed, 133 insertions(+), 20 deletions(-)
Title: Read, Plot and Analyse Output from the DEPONS Model
Description: Methods for analyzing population dynamics and movement tracks simulated using the DEPONS model <https://www.depons.eu> (v.3.0), for manipulating input raster files, shipping routes and for analyzing sound propagated from ships.
Author: Jacob Nabe-Nielsen [aut, cre],
Caitlin K. Frankish [aut],
Axelle Cordier [aut],
Florian G. Weller [aut]
Maintainer: Jacob Nabe-Nielsen <jnn@ecos.au.dk>
Diff between DEPONS2R versions 1.2.4 dated 2024-11-20 and 1.2.5 dated 2025-01-10
DESCRIPTION | 18 MD5 | 49 - NAMESPACE | 4 R/a-misc.R | 218 +++-- R/calibrate_methods.R |only R/dyn-methods.R | 23 R/parameter-methods.R | 2 R/raster-methods.R | 2 R/ships_methods.R | 1300 ++++++++++++++++++++------------ R/track-methods.R | 35 R/z-accessors.R | 6 data/shipdata.RData |binary man/ais.to.DeponsShips.Rd | 3 man/as.data.frame-DeponsTrack-method.Rd | 2 man/calib_01.Rd |only man/check.DeponsShips.Rd |only man/get.simtime.Rd | 2 man/interpolate.ais.data.Rd | 5 man/make.DeponsDyn.Rd | 4 man/make.stationary.ships.Rd |only man/plot-DeponsDyn-missing-method.Rd | 2 man/read.DeponsDyn.Rd | 7 man/read.DeponsDynBatch.Rd |only man/read.DeponsShips.Rd | 3 man/read.DeponsTrack.Rd | 2 man/read.DeponsTrackBatch.Rd |only man/shipdata.Rd | 6 man/tick.to.time.Rd | 11 man/time.to.tick.Rd |only 29 files changed, 1081 insertions(+), 623 deletions(-)
Title: Access and Manipulate Amiga Disk Files
Description: Amiga Disk Files (ADF) are virtual
representations of 3.5 inch floppy disks for the
Commodore Amiga. Most disk drives from other systems
(including modern drives) are not able to read these
disks. The 'adfExplorer' package enables you to
establish R connections to files on such
virtual DOS-formatted disks, which can be use to
read from and write to those files.
Author: Pepijn de Vries [aut, cre] ,
Laurent Clevy [aut, cph]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between adfExplorer versions 2.0.0 dated 2024-12-23 and 2.0.3 dated 2025-01-10
DESCRIPTION | 13 MD5 | 110 +++---- NAMESPACE | 2 NEWS.md | 180 ++++++----- R/adfExplorer-package.R | 28 - R/blocks.R | 170 ++++++----- R/compress.R | 93 +++--- R/connect_adf.R | 257 +++++++++------- R/cpp11.R | 18 - R/demo.R |only R/device_create.R | 201 ++++++------- R/device_info.R | 417 +++++++++++++-------------- R/directory.R | 458 ++++++++++++++--------------- R/entry_info.R | 497 +++++++++++++++----------------- R/helpers.R | 8 R/move.R | 597 +++++++++++++++++++-------------------- R/remove.R | 172 +++++------ R/s3_conn.R | 304 +++++++++---------- R/s3_methods.R | 336 +++++++++++---------- R/virtual_path.R | 72 ++-- README.md | 3 configure.win | 30 - inst/doc/version2.Rmd | 284 +++++++++--------- inst/doc/version2.html | 2 man/adf_block.Rd | 19 + man/adf_directory.Rd | 9 man/close_all_devices.Rd |only man/demo_adf.Rd |only man/device_info.Rd | 9 man/entry_info.Rd | 3 man/exists.Rd | 3 man/list_adf_entries.Rd | 9 man/name.Rd | 9 man/remove_adf_entry.Rd | 10 man/s3_methods.Rd | 19 + man/virtual_path.Rd | 4 src/adf_file_info.cpp | 20 - src/adf_file_operators.cpp | 349 +++++----------------- src/adflib/adf_bitm.c | 2 src/adflib/adf_dev.c | 1 src/adflib/adf_dev_flop.c | 1 src/adflib/adf_file.c | 2 src/adflib/adf_util.h | 6 src/block_adf.cpp | 14 src/cpp11.cpp | 38 +- src/dev_format.cpp | 16 - src/dev_info.cpp | 18 - src/open_adf.cpp | 42 ++ src/open_adf.h | 3 src/open_adf_file.cpp | 153 ++++++--- src/open_adf_file.h | 7 tests/testthat.R | 9 tests/testthat/test_deprecated.R |only tests/testthat/test_directory.R |only tests/testthat/test_entryinfo.R |only tests/testthat/test_examples.R | 6 tests/testthat/test_exceptions.R |only tests/testthat/test_move.R |only tests/testthat/test_remove.R |only tests/testthat/test_s3.R |only vignettes/version2.Rmd | 284 +++++++++--------- 61 files changed, 2670 insertions(+), 2647 deletions(-)
Title: Helper Functions for Simulation Studies
Description: Calculates performance criteria measures and associated Monte Carlo standard errors for simulation results. Includes functions to help run simulation studies, following a general simulation workflow that closely aligns with the approach described by Morris, White, and Crowther (2019) <DOI:10.1002/sim.8086>. Also includes functions for calculating bootstrap confidence intervals (including normal, basic, studentized, percentile, bias-corrected, and bias-corrected-and-accelerated) with tidy output, as well as for extrapolating confidence interval coverage rates and hypothesis test rejection rates following techniques suggested by Boos and Zhang (2000) <DOI:10.1080/01621459.2000.10474226>.
Author: Megha Joshi [aut, cre] ,
James Pustejovsky [aut]
Maintainer: Megha Joshi <megha.j456@gmail.com>
Diff between simhelpers versions 0.3.0 dated 2024-09-04 and 0.3.1 dated 2025-01-10
DESCRIPTION | 8 - MD5 | 26 ++-- NEWS.md | 5 R/bootstrap-projection.R | 69 ++++++++-- R/bundle_sim.R | 2 build/partial.rdb |binary inst/REFERENCES.bib | 13 -- inst/doc/MCSE.html | 4 inst/doc/simulation_workflow.html | 6 inst/doc/visualization.html | 4 man/bootstrap_CIs.Rd | 23 ++- man/bundle_sim.Rd | 2 tests/testthat/test_bootstrap_CI_construction.R | 146 ++++++++++++++--------- tests/testthat/test_bootstrap_CI_extrapolation.R | 4 14 files changed, 198 insertions(+), 114 deletions(-)
Title: Confidence Intervals for Comparisons of Binomial or Poisson
Rates
Description: Computes confidence intervals for the rate (or risk)
difference ('RD') or rate ratio (or relative risk, 'RR') for
binomial proportions or Poisson rates, or for odds ratio
('OR', binomial only). Also confidence intervals for a single
binomial or Poisson rate, and intervals for matched pairs.
Includes skewness-corrected asymptotic score ('SCAS') methods,
which have been developed in Laud (2017) <doi:10.1002/pst.1813>
from Miettinen & Nurminen (1985) <doi:10.1002/sim.4780040211> and
Gart & Nam (1988) <doi:10.2307/2531848>. The same score produces
hypothesis tests analogous to the test for binomial RD and RR by
Farrington & Manning (1990) <doi:10.1002/sim.4780091208>, or the
McNemar test for paired data.
The package also includes MOVER methods
(Method Of Variance Estimates Recovery) for all contrasts, derived
from the Newcombe method but with options to use equal-tailed
intervals in place of the Wilson score method,
and generalised for Bayesian applicati [...truncated...]
Author: Pete Laud [aut, cre]
Maintainer: Pete Laud <p.j.laud@sheffield.ac.uk>
Diff between ratesci versions 0.4-0 dated 2021-12-05 and 0.5.0 dated 2025-01-10
DESCRIPTION | 30 + MD5 | 45 +- NAMESPACE | 1 NEWS.md | 47 +++ R/moverci.R | 83 +++-- R/pairbinci.R | 754 +++++++++++++++++++++++++++++++++++++++++++------ R/rateci.R | 160 +++++++--- R/ratesci-package.R | 30 - R/scoreci.R | 394 ++++++++++++++++--------- build |only man/jeffreysci.Rd | 6 man/moverbci.Rd | 6 man/moverci.Rd | 37 +- man/pairbinci.Rd | 169 ++++++++-- man/rateci.Rd | 9 man/ratesci-package.Rd | 53 +-- man/scasci.Rd | 56 ++- man/scaspci.Rd | 13 man/scoreci.Rd | 130 ++++---- man/tdasci.Rd | 56 ++- tests/testthat/test1.R | 95 +++++- tests/testthat/test2.R | 23 - tests/testthat/test3.R | 166 ++++++++++ tests/testthat/test4.R | 10 24 files changed, 1806 insertions(+), 567 deletions(-)
Title: Access the 'Quickbase' JSON API
Description: Programmatically access the 'Quickbase' JSON API <https://developer.quickbase.com>.
You supply parameters for an API call, 'qbr' delivers an http request to the
API endpoint and returns its response. Outputs follow 'tidyverse' philosophy.
Author: John Erdmann [aut, cre],
Keene State College [cph, fnd]
Maintainer: John Erdmann <john.erdmann@keene.edu>
Diff between qbr versions 1.2.4 dated 2024-09-26 and 1.3.0 dated 2025-01-10
DESCRIPTION | 8 ++--- MD5 | 13 ++++---- NAMESPACE | 1 NEWS.md | 3 + R/glob_vars.R | 1 R/qb_fields.R | 77 +++++++++++++++++++++++++++++++++++++++++++++++++++ README.md | 59 +++++++++++++++++++-------------------- man/delete_fields.Rd |only 8 files changed, 123 insertions(+), 39 deletions(-)
Title: R Interface to Geochemical Modeling Software
Description: A geochemical modeling program developed by the US Geological
Survey that is designed to perform a wide variety of aqueous geochemical
calculations, including speciation, batch-reaction, one-dimensional
reactive-transport, and inverse geochemical calculations.
Author: S.R. Charlton [aut, cre],
D.L. Parkhurst [aut],
C.A.J. Appelo [aut],
with contributions from D. Gillespie for Chipmunk BASIC [aut],
S.D. Cohen [aut],
A.C. Hindmarsh [aut],
R. Serban [aut],
D. Shumaker [aut],
A.G. Taylor for CVODE/SUNDIALS [aut]
Maintainer: S.R. Charlton <charlton@usgs.gov>
Diff between phreeqc versions 3.8.5 dated 2024-12-04 and 3.8.6 dated 2025-01-10
DESCRIPTION | 6 +++--- MD5 | 26 +++++++++++++------------- R/phreeqc.R | 4 ++-- data/databases.rda |binary data/examples.rda |binary man/phreeqc-package.Rd | 4 ++-- src/CSelectedOutput.cpp | 8 ++++---- src/IPhreeqc.cpp | 14 +++++++------- src/IPhreeqc.h | 12 ++++++------ src/IPhreeqchpp.h | 4 ++-- src/Version.h | 8 ++++---- src/phreeqcpp/mainsubs.cpp | 12 +++++++++--- src/phreeqcpp/tidy.cpp | 9 +++++++++ src/phreeqcpp/transport.cpp | 18 +++++++++++------- 14 files changed, 72 insertions(+), 53 deletions(-)
More information about BerkeleyForestsAnalytics at CRAN
Permanent link
Title: Query 'nycflights13'-Like Air Travel Data for Given Years and
Airports
Description: Supplies a set of functions to query air travel data for user-
specified years and airports. Datasets include on-time flights, airlines,
airports, planes, and weather.
Author: Simon P. Couch [aut, cre],
Hadley Wickham [ctb],
Jay Lee [ctb],
Dennis Irorere [ctb]
Maintainer: Simon P. Couch <simonpatrickcouch@gmail.com>
Diff between anyflights versions 0.3.4 dated 2023-09-11 and 0.3.5 dated 2025-01-10
DESCRIPTION | 13 +++++++------ MD5 | 14 +++++++------- NEWS.md | 31 +++++++++++++++---------------- R/get_airports.R | 2 +- R/utils.R | 11 ++++++++++- README.md | 36 +++++++++++++++++------------------- man/anyflights_description.Rd | 2 +- man/get_airports.Rd | 2 +- 8 files changed, 59 insertions(+), 52 deletions(-)
Title: Data Processing of SMN Hi-Res Weather Forecast from 'AWS'
Description: Exploration of Weather Research & Forecasting ('WRF') Model data
of Servicio Meteorologico Nacional (SMN) from Amazon Web Services
(<https://registry.opendata.aws/smn-ar-wrf-dataset/>) cloud. The package
provides the possibility of data downloading, processing and correction
methods. It also has map management and series exploration of available
meteorological variables of 'WRF' forecast.
Author: Gonzalo Diaz [cre, aut]
Maintainer: Gonzalo Diaz <gonzalomartindiaz22@gmail.com>
Diff between aws.wrfsmn versions 0.0.3 dated 2024-03-08 and 0.0.4 dated 2025-01-10
DESCRIPTION | 8 ++++---- MD5 | 18 ++++++++++-------- NAMESPACE | 3 +++ NEWS.md | 6 ++++++ R/ith.R |only R/load_by_variable.R | 4 ++-- build/vignette.rds |binary inst/doc/Multiple-Linear-Regression-Correction.html | 4 ++-- inst/doc/Package-Introduction.html | 2 +- man/ith.Rd |only man/load.by.variable.Rd | 4 ++-- 11 files changed, 30 insertions(+), 19 deletions(-)
Title: Create, Modify and Analyse Phylogenetic Trees
Description: Efficient implementations of functions for the creation,
modification and analysis of phylogenetic trees.
Applications include:
generation of trees with specified shapes;
tree rearrangement;
analysis of tree shape;
rooting of trees and extraction of subtrees;
calculation and depiction of split support;
plotting the position of rogue taxa (Klopfstein & Spasojevic 2019)
<doi:10.1371/journal.pone.0212942>;
calculation of ancestor-descendant relationships,
of 'stemwardness' (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>,
and of tree balance (Mir et al. 2013, Lemant et al. 2022)
<doi:10.1016/j.mbs.2012.10.005>, <doi:10.1093/sysbio/syac027>;
artificial extinction (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>;
import and export of trees from Newick, Nexus (Maddison et al. 1997)
<doi:10.1093/sysbio/46.4.590>,
and TNT <https://www.lillo.org.ar/phylogeny/tnt/> formats;
and analysis of splits and cladistic information.
Author: Martin R. Smith [aut, cre, cph]
,
Emmanuel Paradis [cph] ,
Robert Noble [cph]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TreeTools versions 1.12.0 dated 2024-07-25 and 1.13.0 dated 2025-01-10
DESCRIPTION | 8 MD5 | 147 +- NAMESPACE | 5 NEWS.md | 10 R/AddTip.R | 468 +++--- R/ClusterTable.R | 2 R/Decompose.R |only R/ReadTntTree.R | 4 R/SplitFunctions.R | 898 ++++++------ R/Splits.R | 1305 ++++++++---------- R/as.multiPhylo.R | 1 R/helper_functions.R | 8 R/in.R |only R/match.R |only R/mst.R | 1 R/parse_files.R | 10 R/phylo.R | 628 ++++---- R/sort.R | 1 R/tree_generation.R | 1061 +++++++-------- R/tree_shape.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 inst/REFERENCES.bib | 45 inst/WORDLIST | 2 inst/apa-old-doi-prefix.csl | 2306 ++++++++++++++++++++++----------- inst/doc/filesystem-navigation.Rmd | 3 inst/doc/filesystem-navigation.html | 8 inst/doc/load-data.html | 10 inst/doc/load-trees.html | 12 inst/include/TreeTools/ClusterTable.h | 18 inst/include/TreeTools/SplitList.h | 36 inst/include/TreeTools/assert.h | 6 inst/include/TreeTools/keep_tip.h | 4 inst/include/TreeTools/renumber_tree.h | 13 man/AddTip.Rd | 272 +-- man/AncestorEdge.Rd | 106 - man/ClusterTable-methods.Rd | 14 man/ClusterTable.Rd | 13 man/Decompose.Rd |only man/DescendantEdges.Rd | 178 +- man/EdgeAncestry.Rd | 124 - man/Hamming.Rd | 13 man/LabelSplits.Rd | 2 man/ListAncestors.Rd | 218 +-- man/MSTEdges.Rd | 13 man/MatrixToPhyDat.Rd | 1 man/NSplits.Rd | 2 man/NTip.Rd | 2 man/Neworder.Rd | 128 - man/PhyToString.Rd | 1 man/PolarizeSplits.Rd | 2 man/ReadCharacters.Rd | 277 ++- man/Reorder.Rd | 558 +++---- man/SampleOne.Rd | 17 man/SplitFrequency.Rd | 2 man/Splits.Rd | 2 man/SplitsInBinaryTree.Rd | 2 man/Subtree.Rd | 124 - man/TipLabels.Rd | 244 +-- man/TipTimedTree.Rd | 12 man/TipsInSplits.Rd | 2 man/TreeShape.Rd | 322 ++-- man/UnshiftTree.Rd | 13 man/as.multiPhylo.Rd | 14 man/match.Splits.Rd | 129 - man/match.multiPhylo.Rd |only man/sapply64.Rd | 151 +- man/sort.multiPhylo.Rd | 14 man/xor.Rd | 2 src/RcppExports.cpp | 4 src/splits.cpp | 76 - src/splits_to_tree.cpp | 9 src/tips_in_splits.cpp | 3 src/tree_shape.cpp | 4 tests/testthat/test-Decompose.R |only tests/testthat/test-match.R |only vignettes/filesystem-navigation.Rmd | 3 78 files changed, 5583 insertions(+), 4516 deletions(-)
Title: Base Tools for Semi-Automatic Reporting of Ordinary Surveys
Description: Scaffold an entire web-based report using template chunks, based on a small chapter overview and a dataset.
Highly adaptable with prefixes, suffixes, translations, etc. Also contains tools for password-protecting,
e.g. for each organization's report on a website. Developed for the common case of a survey across multiple organizations/sites
where each organization wants to obtain results for their organization compared with everyone else.
See 'saros' (<https://CRAN.R-project.org/package=saros>) for tools used for authors in the drafted reports.
Author: Stephan Daus [aut, cre, cph] ,
Nordic Institute for The Studies of Innovation, Research and Education
[fnd],
Kristiania University College [fnd]
Maintainer: Stephan Daus <stephus.daus@gmail.com>
Diff between saros.base versions 0.2.1 dated 2024-09-18 and 1.0.0 dated 2025-01-10
DESCRIPTION | 16 MD5 | 143 ++- NAMESPACE | 3 NEWS.md | 18 R/add_chapter_foldername_to_chapter_structure.R | 38 R/add_max_chars_labels_to_chapter_structure.R |only R/add_n_cats_to_chapter_structure.R | 34 R/add_n_range_to_chapter_structure.R | 18 R/add_n_to_chapter_structure.R | 45 - R/add_n_vars_to_chapter_structure.R | 15 R/add_obj_name_to_chapter_structure.R | 53 - R/add_parsed_vars_to_chapter_structure.R | 32 R/append_main_password_file.R | 31 R/arrange2.R | 115 +- R/attach_chapter_dataset.R | 53 - R/check_chapter_structure_for_duplicates.R |only R/collapse_chapter_structure_to_chr.R | 14 R/download_zip_to_folder.R | 9 R/draft_report.R | 38 R/eval_cols.R | 46 - R/filename_sanitizer.R | 101 +- R/find_stat_test.R | 438 ++++------ R/gen_qmd_chapters.R | 138 +-- R/gen_qmd_file.R | 124 +- R/gen_qmd_structure.R | 86 + R/get_organize_by_opts.R |only R/insert_chunk.R | 35 R/log_unused_variables.R | 16 R/look_for_extended.R | 298 +++--- R/process_yaml.R | 55 - R/refine_chapter_overview.R | 396 +++++---- R/remove_entry_from_sidebar.R |only R/remove_from_chapter_structure_if_n_below.R | 15 R/remove_from_chapter_structure_if_no_overlap.R |only R/remove_from_chapter_structure_if_no_type_match.R | 38 R/remove_from_chapter_structure_if_non_significant.R | 149 +-- R/replace_label_groups_with_name_groups.R | 4 R/setup_mesos.R |only R/split_chapter_structure_groups_if_single_y_bivariates.R | 42 R/validate_chapter_structure.R | 128 +- R/validate_draft_report_args.R | 40 R/validate_refine_chapter_overview_args.R | 73 - R/zzz.R | 98 +- build |only inst/WORDLIST | 35 inst/doc |only man/draft_report.Rd | 30 man/gen_qmd_chapters.Rd | 15 man/gen_qmd_file.Rd | 5 man/get_organize_by_opts.Rd |only man/refine_chapter_overview.Rd | 25 man/remove_entry_from_sidebar.Rd |only man/setup_mesos.Rd |only tests/testthat/test-add_chapter_foldername_to_chapter_structure.R | 9 tests/testthat/test-add_max_chars_labels_to_chapter_structure.R |only tests/testthat/test-add_n_cats_to_chapter_structure.R | 15 tests/testthat/test-arrange2.R | 7 tests/testthat/test-check_chapter_structure_for_duplicates.R |only tests/testthat/test-draft_report.R | 72 - tests/testthat/test-filename_sanitizer.R | 14 tests/testthat/test-find_stat_test.R |only tests/testthat/test-gen_qmd_file.R | 6 tests/testthat/test-refine_chapter_overview.R | 94 +- tests/testthat/test-remove_from_chapter_structure_if_no_overlap.R |only tests/testthat/test-setup_mesos.R |only vignettes |only 66 files changed, 1892 insertions(+), 1430 deletions(-)
Title: 'KorAP' Web Service Client Package
Description: A client package that makes the 'KorAP' web service API accessible from R.
The corpus analysis platform 'KorAP' has been developed as a scientific tool to make
potentially large, stratified and multiply annotated corpora, such as the 'German Reference Corpus DeReKo'
or the 'Corpus of the Contemporary Romanian Language CoRoLa', accessible for linguists to let them verify
hypotheses and to find interesting patterns in real language use.
The 'RKorAPClient' package provides access to 'KorAP' and the corpora behind it for user-created R code,
as a programmatic alternative to the 'KorAP' web user-interface.
You can learn more about 'KorAP' and use it directly on 'DeReKo' at <https://korap.ids-mannheim.de/>.
Author: Marc Kupietz [aut, cre],
Nils Diewald [ctb],
Leibniz Institute for the German Language [cph, fnd]
Maintainer: Marc Kupietz <kupietz@ids-mannheim.de>
Diff between RKorAPClient versions 0.8.1 dated 2024-05-02 and 0.9.0 dated 2025-01-10
DESCRIPTION | 8 - MD5 | 41 +++--- NAMESPACE | 15 ++ NEWS.md | 13 + R/KorAPConnection.R | 2 R/KorAPCorpusStats.R | 8 - R/KorAPQuery.R | 135 ++++++++++++-------- R/collocationAnalysis.R | 1 R/collocationScoreQuery.R | 44 ++++++ R/hc_freq_by_year_ci.R | 2 R/textMetadata.R | 35 +++-- demo/00Index | 1 demo/relativeTextpositionBoxplot.R |only inst/CITATION |only man/KorAPConnection-class.Rd | 2 man/KorAPQuery-class.Rd | 9 - man/collocationAnalysis-KorAPConnection-method.Rd | 2 man/collocationScoreQuery-KorAPConnection-method.Rd | 2 man/hc_freq_by_year_ci.Rd | 2 man/mergeDuplicateCollocates.Rd |only tests/testthat/test-collocations.R | 2 tests/testthat/test-corpusQuery.R | 93 +++++++++++++ tests/testthat/test-textMetadata.R | 6 23 files changed, 322 insertions(+), 101 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization, Stochastic dominance and Advanced Monte Carlo sampling. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole [aut, cre],
Roberto Spadim [ctb]
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 10.9.6 dated 2024-12-17 and 11.0 dated 2025-01-10
DESCRIPTION | 8 - MD5 | 34 ++--- R/ARMA.R | 203 +++++++++++++++++++-------------- R/ARMA_optim.R | 95 +++++++++++++-- R/Internal_Functions.R | 81 +++++++++++-- R/Multivariate_Regression.R | 206 ++++++++++++++++++++++++---------- R/NNS_VAR.R | 1 R/NNS_meboot.R | 119 +++++++++---------- R/RcppExports.R | 4 R/Regression.R | 4 README.md | 4 inst/doc/NNSvignette_Forecasting.Rmd | 2 inst/doc/NNSvignette_Forecasting.html | 2 man/NNS.ARMA.optim.Rd | 4 man/PM.matrix.Rd | 4 src/Makevars | 1 src/partial_moments_rcpp.cpp | 4 vignettes/NNSvignette_Forecasting.Rmd | 2 18 files changed, 510 insertions(+), 268 deletions(-)
Title: Collection of Data Sets for Teaching Purposes
Description: Collection (syllogi in greek) of real and fictitious data sets for teaching purposes.
The datasets were manually entered by the author from the respective references as listed in the individual dataset documentation.
The fictions datasets are the creation of the author, that he has found useful for teaching statistics.
Author: Jared Studyvin [aut, cre]
Maintainer: Jared Studyvin <studyvinstat@gmail.com>
Diff between syllogi versions 1.0.3 dated 2024-07-08 and 1.0.4 dated 2025-01-10
DESCRIPTION | 8 +++--- MD5 | 50 +++++++++++++++++++++++++---------------- R/beer.R |only R/golf.R |only R/shipDamage.R |only R/ski.R |only data/alligatorDiet.RData |binary data/alligatorLength.RData |binary data/annualSales.RData |binary data/beer.RData |only data/bighornSheep.RData |binary data/bladderCancer.RData |binary data/butterflyPlot.RData |binary data/depression.RData |binary data/dogFood.RData |binary data/federalistPapers.RData |binary data/genericData.RData |binary data/golf.RData |only data/nutritionCancer.RData |binary data/osteosarcoma.RData |binary data/patientSatisfaction.RData |binary data/politicalIdeology.RData |binary data/schoolProgram.RData |binary data/shipDamage.RData |only data/shipGold.RData |binary data/ski.RData |only data/weightLoss.RData |binary data/wheat.RData |binary man/beer.Rd |only man/golf.Rd |only man/shipDamage.Rd |only man/ski.Rd |only 32 files changed, 35 insertions(+), 23 deletions(-)
Title: Semi-Automatic Reporting of Ordinary Surveys
Description: Offers a systematic way for conditional reporting of figures and tables for many
(and bivariate combinations of) variables, typically from survey data.
Contains interactive 'ggiraph'-based
(<https://CRAN.R-project.org/package=ggiraph>) plotting functions and
data frame-based summary tables (bivariate significance tests,
frequencies/proportions, unique open ended responses, etc) with
many arguments for customization, and extensions possible. Uses a global
options() system for neatly reducing redundant code.
Also contains tools for immediate saving of objects and returning a hashed link to the object,
useful for creating download links to high resolution images upon rendering in 'Quarto'.
Suitable for highly customized reports, primarily intended for survey
research.
Author: Stephan Daus [aut, cre, cph] ,
Julia Silge [ctb] ,
David Robinson [ctb] ,
Nordic Institute for The Studies of Innovation, Research and Education
[fnd],
Kristiania University College [fnd]
Maintainer: Stephan Daus <stephus.daus@gmail.com>
Diff between saros versions 1.2.0 dated 2024-09-03 and 1.5.0 dated 2025-01-10
saros-1.2.0/saros/tests/testthat/_snaps |only saros-1.2.0/saros/tests/testthat/test-cat_plot_docx.R |only saros-1.2.0/saros/tests/testthat/test-cat_table_docx.R |only saros-1.2.0/saros/tests/testthat/test-summarize_data.R |only saros-1.5.0/saros/DESCRIPTION | 18 saros-1.5.0/saros/MD5 | 104 + saros-1.5.0/saros/NAMESPACE | 5 saros-1.5.0/saros/NEWS.md | 20 saros-1.5.0/saros/R/check_no_duplicated_label_suffix.R |only saros-1.5.0/saros/R/check_sort_by.R | 43 saros-1.5.0/saros/R/crosstable.R | 336 +----- saros-1.5.0/saros/R/crosstable.data.frame.R |only saros-1.5.0/saros/R/crosstable.survey.R |only saros-1.5.0/saros/R/fig_height_h_barchart.R | 548 +++++----- saros-1.5.0/saros/R/get_main_question.R | 45 saros-1.5.0/saros/R/ggsaver.R | 4 saros-1.5.0/saros/R/girafe.R |only saros-1.5.0/saros/R/keep_subitem.R | 25 saros-1.5.0/saros/R/make_content.R | 4 saros-1.5.0/saros/R/make_content.cat_freq_plot_docx.R | 98 + saros-1.5.0/saros/R/make_content.cat_plot_html.R | 160 +- saros-1.5.0/saros/R/make_content.cat_table_html.R | 111 +- saros-1.5.0/saros/R/make_content.chr_table_html.R | 17 saros-1.5.0/saros/R/make_content.sigtest_table_html.R | 56 - saros-1.5.0/saros/R/make_link.R | 144 ++ saros-1.5.0/saros/R/makeme.R | 363 +++--- saros-1.5.0/saros/R/makeme_helpers.R |only saros-1.5.0/saros/R/n_rng.R | 161 +- saros-1.5.0/saros/R/scale_x_reordered.R | 19 saros-1.5.0/saros/R/simple_desciptives.R | 92 + saros-1.5.0/saros/R/summarize_cat_cat_data.R | 374 ++++-- saros-1.5.0/saros/R/summarize_int_cat_data.R | 37 saros-1.5.0/saros/R/validate_makeme_options.R | 64 - saros-1.5.0/saros/R/zzz.R | 77 - saros-1.5.0/saros/build |only saros-1.5.0/saros/inst/WORDLIST | 9 saros-1.5.0/saros/inst/doc |only saros-1.5.0/saros/man/fig_height_h_barchart.Rd | 104 + saros-1.5.0/saros/man/fig_height_h_barchart2.Rd | 37 saros-1.5.0/saros/man/girafe.Rd |only saros-1.5.0/saros/man/make_link.Rd | 142 +- saros-1.5.0/saros/man/make_link.default.Rd |only saros-1.5.0/saros/man/make_link.list.Rd |only saros-1.5.0/saros/man/makeme.Rd | 107 + saros-1.5.0/saros/man/n_range.Rd | 2 saros-1.5.0/saros/man/summarize_cat_cat_data.Rd | 31 saros-1.5.0/saros/tests/testthat/test-add_n_to_label.R |only saros-1.5.0/saros/tests/testthat/test-crosstable.R | 75 - saros-1.5.0/saros/tests/testthat/test-fig_height_h_barchart.R | 226 +--- saros-1.5.0/saros/tests/testthat/test-make_content.cat_plot_docx.R |only saros-1.5.0/saros/tests/testthat/test-make_content.cat_table_docx.R |only saros-1.5.0/saros/tests/testthat/test-make_content.cat_table_html.R | 58 - saros-1.5.0/saros/tests/testthat/test-make_link.R | 15 saros-1.5.0/saros/tests/testthat/test-simple_desciptives.R | 12 saros-1.5.0/saros/tests/testthat/test-summarize_cat_cat_data.R |only saros-1.5.0/saros/vignettes |only 56 files changed, 2133 insertions(+), 1610 deletions(-)
Title: Loading Data from 'Google Ads API'
Description: Interface for loading data from 'Google Ads API',
see <https://developers.google.com/google-ads/api/docs/start>.
Package provide function for authorization and loading reports.
Author: Alexey Seleznev [aut, cre] ,
Netpeak [cph]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rgoogleads versions 0.11.0 dated 2024-05-14 and 0.12.0 dated 2025-01-10
DESCRIPTION | 6 - MD5 | 16 ++-- NEWS.md | 3 R/zzz.R | 2 build/vignette.rds |binary inst/doc/migrate_from_radrowds_us.R | 84 ++++++++++----------- inst/doc/migrate_from_radrowds_us.html | 127 ++++++++++++++++++++++----------- inst/doc/migrate_from_radwords_ru.R | 84 ++++++++++----------- inst/doc/migrate_from_radwords_ru.html | 124 +++++++++++++++++++++----------- 9 files changed, 268 insertions(+), 178 deletions(-)
Title: Construction of Genetic Maps in Experimental Crosses
Description: Analysis of molecular marker data from model (backcrosses,
F2 and recombinant inbred lines) and non-model systems (i. e.
outcrossing species). For the later, it allows statistical
analysis by simultaneously estimating linkage and linkage
phases (genetic map construction) according to Wu et al. (2002)
<doi:10.1006/tpbi.2002.1577>. All analysis are based on multipoint
approaches using hidden Markov models.
Author: Gabriel Margarido [aut],
Marcelo Mollinari [aut],
Cristiane Taniguti [ctb, cre],
Getulio Ferreira [ctb],
Rodrigo Amadeu [ctb],
Jeekin Lau [ctb],
Karl Broman [ctb],
Katharine Preedy [ctb, cph] ,
Bastian Schiffthaler [ctb, cph] ,
Augusto Garcia [aut, c [...truncated...]
Maintainer: Cristiane Taniguti <cht47@cornell.edu>
Diff between onemap versions 3.0.0 dated 2022-11-25 and 3.2.0 dated 2025-01-10
DESCRIPTION | 25 MD5 | 123 NAMESPACE | 9 R/codif_data.R | 354 - R/cpp_utils.R | 360 - R/create_dataset_bins.R | 297 - R/export_functions.R |only R/filters.R | 324 - R/find_bins.R | 30 R/make_seq.R | 10 R/map.R | 5 R/onemap_read_vcfR.R | 107 R/plot_genome_vs_cm.R |only R/read_mapmaker.R | 658 +- R/return_geno.R | 53 R/rf_graph_table.R | 680 +- R/summary_maps.R |only R/utils.R | 1280 ++-- R/write_haplotypes.R | 1036 +-- R/zzz.R | 32 build/partial.rdb |binary build/vignette.rds |binary data/onemap_example_f2.RData |binary data/simu_example_bc.RData |only data/simu_example_f2.RData |only data/simu_example_out.RData |only inst/doc/Inbred_Based_Populations.R | 1385 ++--- inst/doc/Inbred_Based_Populations.Rmd | 3705 +++++++------ inst/doc/Inbred_Based_Populations.html | 5853 ++++++++++------------ inst/doc/Introduction_R.R | 202 inst/doc/Introduction_R.Rmd | 794 +- inst/doc/Introduction_R.html | 1346 ++--- inst/doc/Outcrossing_Populations.R | 1661 +++--- inst/doc/Outcrossing_Populations.Rmd | 3908 +++++++------- inst/doc/Outcrossing_Populations.html | 7685 ++++++++++++++--------------- inst/doc/Overview.R | 28 inst/doc/Overview.Rmd | 32 inst/doc/Overview.html | 875 +-- inst/extdata/simParall_f2.raw |only inst/extdata/simParall_out.raw |only inst/extdata/simu_cod_f2.vcf.gz |only inst/extdata/simu_cod_out.vcf.gz |only inst/extdata/simu_example_bc.raw |only inst/extdata/simu_example_f2.raw |only inst/extdata/simu_example_out.raw |only inst/extdata/vcf_example_bc.raw |only inst/extdata/vcf_example_bc.vcf.gz |only inst/extdata/vcf_example_bc.vcf.gz.tbi |only inst/extdata/vcf_example_riself.raw |only inst/extdata/vcf_example_riself.vcf.gz |only inst/extdata/vcf_example_riself.vcf.gz.tbi |only man/edit_order_onemap.Rd |only man/export_mappoly_genoprob.Rd |only man/export_viewpoly.Rd |only man/load_onemap_sequences.Rd |only man/onemap_read_vcfR.Rd | 2 man/ord_by_geno.Rd |only man/parents_haplotypes.Rd | 11 man/plot_genome_vs_cm.Rd |only man/remove_inds.Rd | 25 man/save_onemap_sequences.Rd |only man/simu_example_bc.Rd |only man/simu_example_f2.Rd |only man/simu_example_out.Rd |only man/summary_maps_onemap.Rd |only src/Makevars.win | 1 src/twopts_bc.cpp | 4 src/twopts_out.cpp | 4 vignettes/Inbred_Based_Populations.Rmd | 3705 +++++++------ vignettes/Introduction_R.Rmd | 794 +- vignettes/Outcrossing_Populations.Rmd | 3908 +++++++------- vignettes/Overview.Rmd | 32 vignettes/f2_img/map.jpg |binary vignettes/f2_img/mds.jpg |binary vignettes/f2_img/plot.simParallel.jpg |only vignettes/f2_img/rcd.jpg |binary vignettes/f2_img/record.jpg |binary vignettes/f2_img/ug.jpg |binary 78 files changed, 21139 insertions(+), 20204 deletions(-)
Title: Multivariate Normal and t Distributions
Description: Computes multivariate normal and t probabilities, quantiles, random deviates,
and densities. Log-likelihoods for multivariate Gaussian models and Gaussian copulae
parameterised by Cholesky factors of covariance or precision matrices are implemented
for interval-censored and exact data, or a mix thereof. Score functions for these
log-likelihoods are available. A class representing multiple lower triangular matrices
and corresponding methods are part of this package.
Author: Alan Genz [aut],
Frank Bretz [aut],
Tetsuhisa Miwa [aut],
Xuefei Mi [aut],
Friedrich Leisch [ctb],
Fabian Scheipl [ctb],
Bjoern Bornkamp [ctb] ,
Martin Maechler [ctb] ,
Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mvtnorm versions 1.3-2 dated 2024-11-04 and 1.3-3 dated 2025-01-10
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ build/partial.rdb |binary inst/NEWS.Rd | 13 +++++++++++++ inst/doc/MVT_Rnews.pdf |binary inst/doc/lmvnorm_src.pdf |binary src/miwa.h | 8 +++++++- 7 files changed, 30 insertions(+), 11 deletions(-)
Title: Ratios of Coefficients in the General Linear Model
Description: Performs (simultaneous) inferences for ratios of linear combinations of coefficients in the general linear model, linear mixed model, and for quantiles in a one-way layout. Multiple comparisons and simultaneous confidence interval estimations can be performed for ratios of treatment means in the normal one-way layout with homogeneous and heterogeneous treatment variances, according to Dilba et al. (2007) <https://cran.r-project.org/doc/Rnews/Rnews_2007-1.pdf> and Hasler and Hothorn (2008) <doi:10.1002/bimj.200710466>. Confidence interval estimations for ratios of linear combinations of linear model parameters like in (multiple) slope ratio and parallel line assays can be carried out. Moreover, it is possible to calculate the sample sizes required in comparisons with a control based on relative margins. For the simple two-sample problem, functions for a t-test for ratio-formatted hypotheses and the corresponding confidence interval are provided assuming homogeneous or hetero [...truncated...]
Author: Gemechis Djira [aut],
Mario Hasler [aut],
Daniel Gerhard [aut],
Lawrence Segbehoe [aut],
Frank Schaarschmidt [aut, cre]
Maintainer: Frank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>
Diff between mratios versions 1.4.2 dated 2020-06-19 and 1.4.4 dated 2025-01-10
DESCRIPTION | 9 ++++--- MD5 | 22 +++++++++--------- R/ttestratio.R | 8 +++--- data/ASAT.rda |binary data/BW.rda |binary data/Mutagenicity.rda |binary data/SRAssay.rda |binary data/angina.rda |binary data/rat.weight.rda |binary man/mcpqrci.Rd | 8 ++++-- man/sci.ratioVH.Rd | 29 +++--------------------- man/simtest.ratioVH.Rd | 57 ++++++++++++++++++------------------------------- 12 files changed, 51 insertions(+), 82 deletions(-)
Title: Colour Schemes for Scientific Data Visualization
Description: Color schemes ready for each type of data (qualitative,
diverging or sequential), with colors that are distinct for all
people, including color-blind readers. This package provides an
implementation of Paul Tol (2018) and Fabio Crameri (2018)
<doi:10.5194/gmd-11-2541-2018> color schemes for use with 'graphics'
or 'ggplot2'. It provides tools to simulate color-blindness and to
test how well the colors of any palette are identifiable. Several
scientific thematic schemes (geologic timescale, land cover, FAO
soils, etc.) are also implemented.
Author: Nicolas Frerebeau [aut, cre] ,
Brice Lebrun [ctb] ,
Vincent Arel-Bundock [ctb] ,
Ulrik Stervbo [ctb] ,
Universite Bordeaux Montaigne [fnd],
CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between khroma versions 1.14.0 dated 2024-08-26 and 1.15.0 dated 2025-01-10
khroma-1.14.0/khroma/man/palette_size_range.Rd |only khroma-1.15.0/khroma/DESCRIPTION | 26 +++---- khroma-1.15.0/khroma/MD5 | 44 ++++++------- khroma-1.15.0/khroma/NAMESPACE | 2 khroma-1.15.0/khroma/NEWS.md | 7 ++ khroma-1.15.0/khroma/R/khroma-deprecated.R | 13 +++ khroma-1.15.0/khroma/R/khroma-package.R | 2 khroma-1.15.0/khroma/R/palettes.R | 30 +++++++- khroma-1.15.0/khroma/README.md | 4 - khroma-1.15.0/khroma/build/partial.rdb |binary khroma-1.15.0/khroma/build/vignette.rds |binary khroma-1.15.0/khroma/inst/CITATION | 2 khroma-1.15.0/khroma/inst/doc/crameri.html | 2 khroma-1.15.0/khroma/inst/doc/tol.html | 2 khroma-1.15.0/khroma/inst/examples/ex-palette-continuous.R | 21 ++++++ khroma-1.15.0/khroma/inst/examples/ex-palette-discrete.R | 1 khroma-1.15.0/khroma/inst/tinytest/test_palettes.R | 16 ++-- khroma-1.15.0/khroma/man/khroma-deprecated.Rd | 3 khroma-1.15.0/khroma/man/khroma-package.Rd | 2 khroma-1.15.0/khroma/man/palette_color_continuous.Rd | 23 ++++++ khroma-1.15.0/khroma/man/palette_color_discrete.Rd | 3 khroma-1.15.0/khroma/man/palette_color_picker.Rd | 2 khroma-1.15.0/khroma/man/palette_shape.Rd | 3 khroma-1.15.0/khroma/man/palette_size.Rd |only 24 files changed, 150 insertions(+), 58 deletions(-)
Title: Interactive Forest Plot
Description: Interactive forest plot for clinical trial safety analysis
using 'metalite', 'reactable', 'plotly', and Analysis Data Model (ADaM)
datasets. Includes functionality for adverse event filtering,
incidence-based group filtering, hover-over reveals, and search and sort
operations. The workflow allows for metadata construction, data preparation,
output formatting, and interactive plot generation.
Author: Yilong Zhang [aut],
Benjamin Wang [aut, cre],
Yujie Zhao [aut],
Nan Xiao [ctb],
Hiroaki Fukuda [ctb],
Yulia Sidi [ctb],
Xuan Deng [ctb],
Merck & Co., Inc., Rahway, NJ, USA and its affiliates [cph]
Maintainer: Benjamin Wang <benjamin.wang@merck.com>
Diff between forestly versions 0.1.1 dated 2024-07-08 and 0.1.2 dated 2025-01-10
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NEWS.md | 19 ++++++++++++------- R/ae_forestly.R | 16 ++++++++++++---- R/reactable2.R | 2 +- README.md | 7 +++++-- inst/doc/forest-plot-static.html | 8 ++++---- inst/doc/forestly-cran.R | 1 + inst/doc/forestly-cran.Rmd | 1 + inst/doc/forestly-cran.html | 13 +++++++------ man/ae_forestly.Rd | 3 +++ vignettes/forestly-cran.Rmd | 1 + 12 files changed, 62 insertions(+), 39 deletions(-)
Title: DSM and LiDAR downloader
Description: A collection of functions to search and donwload
DSM (Digital Surface Model) and LiDAR (Light Detection and Ranging) data via APIs,
including 'OpenTopography' <https://portal.opentopography.org/apidocs/> and
'TNMAccess' <https://apps.nationalmap.gov/tnmaccess/#/>.
Author: Xiaohao Yang [aut, cre, cph],
Nathan Fox [aut],
Derek Van Berkel [aut],
Mark Lindquist [aut]
Maintainer: Xiaohao Yang <xiaohaoy@umich.edu>
Diff between dsmSearch versions 1.1.0 dated 2024-12-19 and 1.1.1 dated 2025-01-10
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/get_lidar.R | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Contrast Analyses for Factorial Designs
Description: Contrast analysis for factorial designs provides an
alternative to the traditional ANOVA approach, offering the distinct
advantage of testing targeted hypotheses. The foundation of this
package is primarily rooted in the works of Rosenthal, Rosnow, and
Rubin (2000, ISBN: 978-0521659802) as well as Sedlmeier and Renkewitz
(2018, ISBN: 978-3868943214).
Author: Johannes Titz [aut, cre],
Markus Burkhardt [aut],
Mirka Henninger [ctb],
Simone Malejka [ctb]
Maintainer: Johannes Titz <johannes.titz@gmail.com>
Diff between cofad versions 0.3.1 dated 2024-12-06 and 0.3.2 dated 2025-01-10
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/data.R | 2 +- data/akan.rda |binary man/akan.Rd | 2 +- 6 files changed, 14 insertions(+), 10 deletions(-)
Title: Evaluate Function Calls on HPC Schedulers (LSF, SGE, SLURM,
PBS/Torque)
Description: Evaluate arbitrary function calls using workers on HPC schedulers
in single line of code. All processing is done on the network without
accessing the file system. Remote schedulers are supported via SSH.
Author: Michael Schubert [aut, cre, cph]
,
ZeroMQ authors [aut, cph]
Maintainer: Michael Schubert <mschu.dev@gmail.com>
Diff between clustermq versions 0.9.5 dated 2024-08-19 and 0.9.6 dated 2025-01-10
clustermq-0.9.5/clustermq/src/libzmq/config.log |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq.7 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_atomic_counter_dec.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_atomic_counter_destroy.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_atomic_counter_inc.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_atomic_counter_new.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_atomic_counter_set.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_atomic_counter_value.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_bind.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_close.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_connect.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_connect_peer.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_ctx_get.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_ctx_new.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_ctx_set.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_ctx_shutdown.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_ctx_term.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_curve.7 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_curve_keypair.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_curve_public.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_disconnect.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_errno.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_getsockopt.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_gssapi.7 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_has.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_inproc.7 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_ipc.7 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_msg_close.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_msg_copy.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_msg_data.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_msg_get.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_msg_gets.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_msg_init.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_msg_init_buffer.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_msg_init_data.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_msg_init_size.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_msg_more.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_msg_move.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_msg_recv.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_msg_routing_id.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_msg_send.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_msg_set.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_msg_set_routing_id.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_msg_size.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_null.7 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_pgm.7 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_plain.7 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_poll.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_poller.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_ppoll.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_proxy.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_proxy_steerable.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_recv.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_recvmsg.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_send.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_send_const.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_sendmsg.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_setsockopt.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_socket.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_socket_monitor.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_socket_monitor_versioned.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_strerror.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_tcp.7 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_timers.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_tipc.7 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_udp.7 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_unbind.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_version.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_vmci.7 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_z85_decode.3 |only clustermq-0.9.5/clustermq/src/libzmq/doc/zmq_z85_encode.3 |only clustermq-0.9.5/clustermq/src/libzmq/src/zmq_utils.h.orig |only clustermq-0.9.6/clustermq/DESCRIPTION | 6 clustermq-0.9.6/clustermq/MD5 | 146 clustermq-0.9.6/clustermq/NEWS.md | 6 clustermq-0.9.6/clustermq/R/Q_rows.r | 4 clustermq-0.9.6/clustermq/R/qsys_lsf.r | 2 clustermq-0.9.6/clustermq/R/qsys_sge.r | 2 clustermq-0.9.6/clustermq/R/qsys_slurm.r | 2 clustermq-0.9.6/clustermq/R/summarize_result.r | 2 clustermq-0.9.6/clustermq/R/util.r | 5 clustermq-0.9.6/clustermq/build/vignette.rds |binary clustermq-0.9.6/clustermq/inst/doc/faq.R | 14 clustermq-0.9.6/clustermq/inst/doc/technicaldocs.R | 50 clustermq-0.9.6/clustermq/inst/doc/userguide.R | 135 clustermq-0.9.6/clustermq/inst/doc/userguide.Rmd | 7 clustermq-0.9.6/clustermq/inst/doc/userguide.html | 342 clustermq-0.9.6/clustermq/src/CMQMaster.h | 33 clustermq-0.9.6/clustermq/src/CMQProxy.h | 2 clustermq-0.9.6/clustermq/src/common.cpp | 7 clustermq-0.9.6/clustermq/src/common.h | 1 clustermq-0.9.6/clustermq/src/libzmq/Makefile.in | 547 clustermq-0.9.6/clustermq/src/libzmq/aclocal.m4 | 466 clustermq-0.9.6/clustermq/src/libzmq/builds/Makefile.in | 19 clustermq-0.9.6/clustermq/src/libzmq/builds/deprecated-msvc/Makefile.in | 19 clustermq-0.9.6/clustermq/src/libzmq/config/compile | 11 clustermq-0.9.6/clustermq/src/libzmq/config/config.guess | 112 clustermq-0.9.6/clustermq/src/libzmq/config/config.sub | 251 clustermq-0.9.6/clustermq/src/libzmq/config/depcomp | 15 clustermq-0.9.6/clustermq/src/libzmq/config/install-sh | 14 clustermq-0.9.6/clustermq/src/libzmq/config/ltmain.sh | 735 - clustermq-0.9.6/clustermq/src/libzmq/config/missing | 75 clustermq-0.9.6/clustermq/src/libzmq/config/test-driver | 15 clustermq-0.9.6/clustermq/src/libzmq/configure | 5811 ++++++---- clustermq-0.9.6/clustermq/src/libzmq/doc/Makefile.in | 28 clustermq-0.9.6/clustermq/src/libzmq/include/zmq_utils.h | 23 clustermq-0.9.6/clustermq/src/libzmq/include/zmq_utils.h.orig | 23 clustermq-0.9.6/clustermq/src/libzmq/src/platform.hpp.in | 61 clustermq-0.9.6/clustermq/tests/testthat/test-0-util.r | 21 clustermq-0.9.6/clustermq/vignettes/userguide.Rmd | 7 110 files changed, 5668 insertions(+), 3351 deletions(-)
Title: Workflow for Open Reproducible Code in Science
Description: Create reproducible and transparent research projects in 'R'.
This package is based on the Workflow for Open
Reproducible Code in Science (WORCS), a step-by-step procedure based on best
practices for
Open Science. It includes an 'RStudio' project template, several
convenience functions, and all dependencies required to make your project
reproducible and transparent. WORCS is explained in the tutorial paper
by Van Lissa, Brandmaier, Brinkman, Lamprecht, Struiksma, & Vreede (2021).
<doi:10.3233/DS-210031>.
Author: Caspar J. Van Lissa [aut, cre]
,
Aaron Peikert [aut] ,
Andreas M. Brandmaier [aut]
Maintainer: Caspar J. Van Lissa <c.j.vanlissa@tilburguniversity.edu>
Diff between worcs versions 0.1.16 dated 2025-01-07 and 0.1.17 dated 2025-01-10
DESCRIPTION | 10 - MD5 | 48 ++-- NAMESPACE | 4 R/check_installation.R | 311 ++++++++++++-------------------- R/export.R | 8 R/github.R | 82 ++++---- R/worcs_project.R | 28 -- R/zzz.R | 15 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/citation.html | 9 inst/doc/synthetic_data.R | 17 - inst/doc/synthetic_data.Rmd | 17 - inst/doc/synthetic_data.html | 62 +++--- man/has_git_user.Rd | 15 + tests/testthat/helper_usethis.R | 17 + tests/testthat/test-add_manuscript.R | 6 tests/testthat/test-checksum_markdown.R | 17 - tests/testthat/test-citations.R | 2 tests/testthat/test-dir_of_save_data.R | 2 tests/testthat/test-export_project.R | 3 tests/testthat/test-github.R | 2 tests/testthat/test-targets.R | 184 +++++++++--------- tests/testthat/test-worcs_project.R | 15 - vignettes/synthetic_data.Rmd | 17 - 25 files changed, 412 insertions(+), 479 deletions(-)
Title: A Pharmacometrics Data Transformation and Analysis Tool
Description: Exploration of pharmacometrics data involves both general tools (transformation and plotting) and specific techniques (non-compartmental analysis). This kind of exploration is generally accomplished by utilizing different packages. The purpose of 'ruminate' is to create a 'shiny' interface to make these tools more broadly available while creating reproducible results.
Author: John Harrold [aut, cre]
Maintainer: John Harrold <john.m.harrold@gmail.com>
Diff between ruminate versions 0.2.4 dated 2024-05-27 and 0.3.1 dated 2025-01-10
DESCRIPTION | 19 MD5 | 161 ++++-- NAMESPACE | 51 ++ NEWS.md | 11 R/CTS_Server.R |only R/MB_Server.R |only R/NCA_Server.R | 779 +++++++++++++++++++++----------- R/ruminate.R | 35 + R/simulate_rules.R | 616 ++++++++++++++++++++----- README.md | 57 -- build/vignette.rds |binary inst/doc/deployment.R | 64 +- inst/doc/deployment.Rmd | 14 inst/doc/deployment.html | 64 +- inst/doc/noncompartmental_analysis.R | 116 ++-- inst/doc/noncompartmental_analysis.html | 28 - inst/docker/install_packages.R | 23 inst/docker/local_container | 6 inst/preload |only inst/templates/CTS.yaml |only inst/templates/CTS_module_components.R |only inst/templates/MB.yaml |only inst/templates/MB_model_NONMEM.ctl |only inst/templates/MB_model_rxode2.R |only inst/templates/MB_module_components.R |only inst/templates/NCA.yaml | 20 inst/templates/ruminate.R | 43 + inst/templates/ruminate_devel.R | 61 +- inst/test_apps/CTS_funcs.R |only inst/test_apps/MB_funcs.R |only inst/test_apps/NCA_funcs.R | 9 inst/test_apps/nca_app.R | 43 + inst/test_apps/simulate_rules_funcs.R | 16 man/CTS_Server.Rd |only man/CTS_add_covariate.Rd |only man/CTS_add_rule.Rd |only man/CTS_append_report.Rd |only man/CTS_change_source_model.Rd |only man/CTS_del_current_element.Rd |only man/CTS_fetch_code.Rd |only man/CTS_fetch_current_element.Rd |only man/CTS_fetch_ds.Rd |only man/CTS_fetch_sc_meta.Rd |only man/CTS_fetch_state.Rd |only man/CTS_init_element_model.Rd |only man/CTS_init_state.Rd |only man/CTS_mk_preload.Rd |only man/CTS_new_element.Rd |only man/CTS_plot_element.Rd |only man/CTS_preload.Rd |only man/CTS_set_current_element.Rd |only man/CTS_sim_isgood.Rd |only man/CTS_simulate_element.Rd |only man/CTS_test_mksession.Rd |only man/CTS_update_checksum.Rd |only man/MB_Server.Rd |only man/MB_append_report.Rd |only man/MB_build_code.Rd |only man/MB_del_current_element.Rd |only man/MB_fetch_appends.Rd |only man/MB_fetch_catalog.Rd |only man/MB_fetch_code.Rd |only man/MB_fetch_component.Rd |only man/MB_fetch_current_element.Rd |only man/MB_fetch_mdl.Rd |only man/MB_fetch_state.Rd |only man/MB_init_state.Rd |only man/MB_mk_preload.Rd |only man/MB_new_element.Rd |only man/MB_preload.Rd |only man/MB_set_current_element.Rd |only man/MB_test_catalog.Rd |only man/MB_test_mksession.Rd |only man/MB_update_checksum.Rd |only man/MB_update_model.Rd |only man/NCA_Server.Rd | 43 + man/NCA_add_int.Rd | 2 man/NCA_append_report.Rd | 13 man/NCA_fetch_ana_ds.Rd | 9 man/NCA_fetch_ana_pknca.Rd | 9 man/NCA_fetch_code.Rd | 9 man/NCA_fetch_current_ana.Rd | 9 man/NCA_fetch_current_obj.Rd | 2 man/NCA_fetch_ds.Rd | 2 man/NCA_fetch_state.Rd | 9 man/NCA_find_col.Rd | 9 man/NCA_mk_preload.Rd |only man/NCA_mkactive_ana.Rd | 9 man/NCA_new_ana.Rd | 9 man/NCA_preload.Rd |only man/NCA_process_current_ana.Rd | 9 man/NCA_set_current_ana.Rd | 9 man/NCA_test_mksession.Rd | 34 - man/fetch_rxinfo.Rd |only man/fetch_rxtc.Rd |only man/mk_figure_ind_obs.Rd | 12 man/mk_rx_obj.Rd |only man/mk_subjects.Rd |only man/mk_table_ind_obs.Rd | 12 man/mk_table_nca_params.Rd | 12 man/nca_builder.Rd | 16 man/plot_sr_ev.Rd |only man/plot_sr_tc.Rd |only man/ruminate.Rd | 6 man/run_nca_components.Rd | 9 man/rx2other.Rd |only man/simulate_rules.Rd |only tests/testthat/test-CTS.R |only tests/testthat/test-NCA.R | 6 tests/testthat/test-fetch_rxinfo.R |only vignettes/deployment.Rmd | 14 vignettes/rmdhunks/simulate_rules.Rmd | 26 - 112 files changed, 1629 insertions(+), 906 deletions(-)
Title: Calculate Clinical Scores for Hidradenitis Suppurativa (HS), a
Dermatologic Disease
Description: Calculate clinical scores for hidradenitis suppurativa (HS), a
dermatologic disease. The scores are typically used for evaluation of
efficacy in clinical trials. The scores are not commonly used in clinical
practice. The specific scores implemented are Hidradenitis Suppurativa
Clinical Response (HiSCR) (Kimball, et al. (2015) <doi:10.1111/jdv.13216>),
Hidradenitis Suppurativa Area and Severity Index Revised (HASI-R) (Goldfarb,
et al. (2020) <doi:10.1111/bjd.19565>), hidradenitis suppurativa Physician
Global Assessment (HS PGA) (Marzano, et al. (2020) <doi:10.1111/jdv.16328>),
and the International Hidradenitis Suppurativa Severity Score System (IHS4)
(Zouboulis, et al. (2017) <doi:10.1111/bjd.15748>).
Author: Bill Denney [aut, cre] ,
Devon Bartlett [aut]
Maintainer: Bill Denney <wdenney@humanpredictions.com>
Diff between hidradenitis versions 1.0.0 dated 2024-07-04 and 1.0.1 dated 2025-01-10
DESCRIPTION | 9 +++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ README.md | 8 ++++---- 4 files changed, 16 insertions(+), 11 deletions(-)
Title: Classical Cryptography Methods for Words and Phrases
Description: Classical cryptography methods for words and brief phrases.
Substitution, transposition and concealment (null) ciphers are available, like
Caesar, Vigenère, Atbash, affine, simple substitution, Playfair,
rail fence, Scytale, single column, bifid, trifid, and Polybius ciphers.
Author: Luigi Annicchiarico [cre, aut]
Maintainer: Luigi Annicchiarico <luigi.annic@gmail.com>
Diff between ciphertext versions 0.1.0 dated 2024-12-20 and 0.1.1 dated 2025-01-10
DESCRIPTION | 8 +++---- MD5 | 48 +++++++++++++++++++++++++---------------------- NAMESPACE | 2 + NEWS.md | 7 ++++++ R/affine.R | 6 ++--- R/bifid_delastelle.R |only R/caesar.R | 7 +++--- R/nullcipher.R | 4 +-- R/playfair.R | 15 +++++++------- R/polybius.R | 11 +++++----- R/railfence.R | 2 - R/scytale.R | 9 ++++---- R/singlecolumn.R | 2 - R/trifid_delastelle.R |only R/vigenere.R | 7 +++--- man/affine.Rd | 4 +-- man/bifid_delastelle.Rd |only man/caesar.Rd | 4 +-- man/nullcipher.Rd | 4 +-- man/playfair.Rd | 6 ++--- man/polybius.Rd | 6 ++--- man/railfence.Rd | 2 - man/scytale.Rd | 4 +-- man/singlecolumn.Rd | 2 - man/trifid_delastelle.Rd |only man/vigenere.Rd | 4 +-- tests/testthat/tests.R | 4 +-- 27 files changed, 93 insertions(+), 75 deletions(-)
Title: Generalized Dissimilarity Modeling
Description: A toolkit with functions to fit, plot, summarize, and apply Generalized Dissimilarity Models. Mokany K, Ware C, Woolley SNC, Ferrier S, Fitzpatrick MC (2022) <doi:10.1111/geb.13459> Ferrier S, Manion G, Elith J, Richardson K (2007) <doi:10.1111/j.1472-4642.2007.00341.x>.
Author: Matt Fitzpatrick [aut, cre] ,
Karel Mokany [aut] ,
Glenn Manion [aut],
Diego Nieto-Lugilde [aut] ,
Simon Ferrier [aut] ,
Roozbeh Valavi [ctb],
Matthew Lisk [ctb],
Chris Ware [ctb],
Skip Woolley [ctb],
Tom Harwood [ctb]
Maintainer: Matt Fitzpatrick <mfitzpatrick@umces.edu>
Diff between gdm versions 1.6.0-4 dated 2024-12-02 and 1.6.0-5 dated 2025-01-10
DESCRIPTION | 8 +-- MD5 | 22 ++++----- NEWS.md | 7 +++ R/gdm.transform.R | 94 ++++++++++++++++++++++++++++-------------- inst/tinytest/test_gdm.R | 68 +++++++++++++++--------------- man/formatsitepair.Rd | 4 - man/gdm.Rd | 4 - man/gdm.partition.deviance.Rd | 4 - man/gdm.varImp.Rd | 4 - man/plot.gdm.Rd | 4 - man/plotUncertainty.Rd | 4 - man/subsample.sitepair.Rd | 4 - 12 files changed, 133 insertions(+), 94 deletions(-)
More information about exams.forge.data at CRAN
Permanent link
Title: Display Idiomatic Code to Construct Most R Objects
Description: Prints code that can be used to recreate R objects. In a
sense it is similar to 'base::dput()' or 'base::deparse()' but
'constructive' strives to use idiomatic constructors.
Author: Antoine Fabri [aut, cre],
Kirill Mueller [ctb] ,
Jacob Scott [ctb]
Maintainer: Antoine Fabri <antoine.fabri@gmail.com>
Diff between constructive versions 1.0.1 dated 2024-07-07 and 1.1.0 dated 2025-01-10
constructive-1.0.1/constructive/man/dot-cstr_fetch_opts.Rd |only constructive-1.1.0/constructive/DESCRIPTION | 32 - constructive-1.1.0/constructive/MD5 | 161 +++++--- constructive-1.1.0/constructive/NAMESPACE | 29 + constructive-1.1.0/constructive/NEWS.md | 32 + constructive-1.1.0/constructive/R/bypass.R | 13 constructive-1.1.0/constructive/R/character-helpers.R | 2 constructive-1.1.0/constructive/R/construct-helpers.R | 1 constructive-1.1.0/constructive/R/construct.R | 9 constructive-1.1.0/constructive/R/construct_clip.R | 2 constructive-1.1.0/constructive/R/construct_diff.R | 5 constructive-1.1.0/constructive/R/construct_idiomatic.R | 2 constructive-1.1.0/constructive/R/deparse_call.R | 2 constructive-1.1.0/constructive/R/environment_utils.R | 5 constructive-1.1.0/constructive/R/opts.R | 23 - constructive-1.1.0/constructive/R/s3-POSIXct.R | 12 constructive-1.1.0/constructive/R/s3-POSIXlt.R | 26 + constructive-1.1.0/constructive/R/s3-R6.R |only constructive-1.1.0/constructive/R/s3-R6ClassGenerator.R |only constructive-1.1.0/constructive/R/s3-data.frame.R | 41 +- constructive-1.1.0/constructive/R/s3-data.table.R | 40 +- constructive-1.1.0/constructive/R/s3-environment.R | 2 constructive-1.1.0/constructive/R/s3-matrix.R | 34 + constructive-1.1.0/constructive/R/s3-numeric_version.R | 9 constructive-1.1.0/constructive/R/s3-tbl_df.R | 66 +++ constructive-1.1.0/constructive/R/s3-xts.R |only constructive-1.1.0/constructive/R/s3-yearmon.R |only constructive-1.1.0/constructive/R/s3-yearqtr.R |only constructive-1.1.0/constructive/R/s3-zoo.R |only constructive-1.1.0/constructive/R/s3-zooreg.R |only constructive-1.1.0/constructive/R/templates.R | 35 + constructive-1.1.0/constructive/R/zzz.R | 2 constructive-1.1.0/constructive/README.md | 2 constructive-1.1.0/constructive/inst/WORDLIST |only constructive-1.1.0/constructive/inst/doc/extend-constructive.R | 16 constructive-1.1.0/constructive/inst/doc/extend-constructive.html | 182 +++++----- constructive-1.1.0/constructive/inst/new_class_template_commented_no_import.R |only constructive-1.1.0/constructive/inst/new_class_template_no_import.R |only constructive-1.1.0/constructive/inst/new_constructor_template_commented_no_import.R |only constructive-1.1.0/constructive/inst/new_constructor_template_no_import.R |only constructive-1.1.0/constructive/man/construct.Rd | 15 constructive-1.1.0/constructive/man/constructive-package.Rd | 3 constructive-1.1.0/constructive/man/figures/logo.png |only constructive-1.1.0/constructive/man/opts_R6.Rd |only constructive-1.1.0/constructive/man/opts_R6ClassGenerator.Rd |only constructive-1.1.0/constructive/man/opts_data.frame.Rd | 6 constructive-1.1.0/constructive/man/opts_data.table.Rd | 7 constructive-1.1.0/constructive/man/opts_matrix.Rd | 4 constructive-1.1.0/constructive/man/opts_tbl_df.Rd | 6 constructive-1.1.0/constructive/man/opts_xts.Rd |only constructive-1.1.0/constructive/man/opts_yearmon.Rd |only constructive-1.1.0/constructive/man/opts_yearqtr.Rd |only constructive-1.1.0/constructive/man/opts_zoo.Rd |only constructive-1.1.0/constructive/man/opts_zooreg.Rd |only constructive-1.1.0/constructive/man/templates.Rd | 15 constructive-1.1.0/constructive/tests/testthat/_snaps/construct_diff.md | 8 constructive-1.1.0/constructive/tests/testthat/_snaps/construct_dput.md | 18 constructive-1.1.0/constructive/tests/testthat/_snaps/deparse_call.md | 8 constructive-1.1.0/constructive/tests/testthat/_snaps/encoding.md | 24 + constructive-1.1.0/constructive/tests/testthat/_snaps/s3-AsIs.md | 2 constructive-1.1.0/constructive/tests/testthat/_snaps/s3-POSIXct.md | 7 constructive-1.1.0/constructive/tests/testthat/_snaps/s3-POSIXlt.md | 27 + constructive-1.1.0/constructive/tests/testthat/_snaps/s3-R6.md |only constructive-1.1.0/constructive/tests/testthat/_snaps/s3-R6ClassGenerator.md |only constructive-1.1.0/constructive/tests/testthat/_snaps/s3-array.md | 8 constructive-1.1.0/constructive/tests/testthat/_snaps/s3-constructive_options.md | 2 constructive-1.1.0/constructive/tests/testthat/_snaps/s3-data.frame.md | 143 ++++++- constructive-1.1.0/constructive/tests/testthat/_snaps/s3-data.table.md | 109 +++++ constructive-1.1.0/constructive/tests/testthat/_snaps/s3-dm.md | 2 constructive-1.1.0/constructive/tests/testthat/_snaps/s3-grouped_df.md | 2 constructive-1.1.0/constructive/tests/testthat/_snaps/s3-matrix.md | 47 ++ constructive-1.1.0/constructive/tests/testthat/_snaps/s3-mts.md | 60 +++ constructive-1.1.0/constructive/tests/testthat/_snaps/s3-numeric_version.md | 12 constructive-1.1.0/constructive/tests/testthat/_snaps/s3-rowwise_df.md | 4 constructive-1.1.0/constructive/tests/testthat/_snaps/s3-tbl_df.md | 81 ++++ constructive-1.1.0/constructive/tests/testthat/_snaps/s3-xts.md |only constructive-1.1.0/constructive/tests/testthat/_snaps/s3-yearmon.md |only constructive-1.1.0/constructive/tests/testthat/_snaps/s3-yearqtr.md |only constructive-1.1.0/constructive/tests/testthat/_snaps/s3-zoo.md |only constructive-1.1.0/constructive/tests/testthat/_snaps/s3-zooreg.md |only constructive-1.1.0/constructive/tests/testthat/test-deparse_call.R | 4 constructive-1.1.0/constructive/tests/testthat/test-encoding.R | 15 constructive-1.1.0/constructive/tests/testthat/test-s3-POSIXct.R | 48 ++ constructive-1.1.0/constructive/tests/testthat/test-s3-POSIXlt.R | 11 constructive-1.1.0/constructive/tests/testthat/test-s3-R6.R |only constructive-1.1.0/constructive/tests/testthat/test-s3-R6ClassGenerator.R |only constructive-1.1.0/constructive/tests/testthat/test-s3-array.R | 6 constructive-1.1.0/constructive/tests/testthat/test-s3-data.frame.R | 36 + constructive-1.1.0/constructive/tests/testthat/test-s3-data.table.R | 33 + constructive-1.1.0/constructive/tests/testthat/test-s3-ggplot2-Coord.R | 1 constructive-1.1.0/constructive/tests/testthat/test-s3-matrix.R | 20 + constructive-1.1.0/constructive/tests/testthat/test-s3-mts.R | 11 constructive-1.1.0/constructive/tests/testthat/test-s3-numeric_version.R | 3 constructive-1.1.0/constructive/tests/testthat/test-s3-tbl_df.R | 30 + constructive-1.1.0/constructive/tests/testthat/test-s3-xts.R |only constructive-1.1.0/constructive/tests/testthat/test-s3-yearmon.R |only constructive-1.1.0/constructive/tests/testthat/test-s3-yearqtr.R |only constructive-1.1.0/constructive/tests/testthat/test-s3-zoo.R |only constructive-1.1.0/constructive/tests/testthat/test-s3-zooreg.R |only 99 files changed, 1279 insertions(+), 344 deletions(-)
Title: Package for Community Ecology and Suitability Analysis
Description: Graphical User Interface (via the R-Commander) and utility functions (often based on the vegan package) for statistical analysis of biodiversity and ecological communities, including species accumulation curves, diversity indices, Renyi profiles, GLMs for analysis of species abundance and presence-absence, distance matrices, Mantel tests, and cluster, constrained and unconstrained ordination analysis. A book on biodiversity and community ecology analysis is available for free download from the website. In 2012, methods for (ensemble) suitability modelling and mapping were expanded in the package.
Author: Roeland Kindt [cre, aut]
Maintainer: Roeland Kindt <RoelandCEKindt@gmail.com>
Diff between BiodiversityR versions 2.16-1 dated 2024-03-16 and 2.17-1 dated 2025-01-10
DESCRIPTION | 12 +-- MD5 | 14 ++-- NAMESPACE | 2 R/treegoer.R | 151 ++++++++++++++++++++++++++++++++++++++++---- inst/ChangeLog | 21 ++++++ inst/etc/Rcmdr-menus.txt | 3 man/ensemble.PET.seasons.Rd | 2 man/treegoer.Rd | 85 ++++++++++++++++++++++-- 8 files changed, 254 insertions(+), 36 deletions(-)
Title: Species-Habitat Associations
Description: Analyse species-habitat associations in R. Therefore, information about the location
of the species (as a point pattern) is needed together with environmental conditions
(as a categorical raster). To test for significance habitat associations, one of
the two components is randomized. Methods are mainly based on Plotkin et al. (2000)
<doi:10.1006/jtbi.2000.2158> and Harms et al. (2001) <doi:10.1111/j.1365-2745.2001.00615.x>.
Author: Maximilian H.K. Hesselbarth [aut, cre]
,
Marco Sciaini [aut] ,
Chris Wudel [aut] ,
Zeke Marshall [ctb] ,
Thomas Etherington [ctb] ,
Janosch Heinermann [ctb]
Maintainer: Maximilian H.K. Hesselbarth <mhk.hesselbarth@gmail.com>
Diff between shar versions 2.3 dated 2024-02-14 and 2.3.1 dated 2025-01-10
DESCRIPTION | 8 MD5 | 74 +- NEWS.md | 4 R/calculate_energy.R | 366 ++++++------ R/classify_habitats.R | 160 ++--- R/get_dist_pairs.R | 46 - R/list_to_randomized.R | 160 ++--- R/pack_randomized.R | 72 +- R/plot.rd_mar.R | 400 ++++++------- R/plot.rd_pat.R | 520 ++++++++--------- R/plot.rd_ras.R | 128 ++-- R/plot_energy.R | 146 ++--- R/print.rd_pat.R | 184 +++--- R/print.rd_ras.R | 130 ++-- R/reconstruct_pattern.R | 278 ++++----- R/reconstruct_pattern_marks.R | 642 +++++++++++----------- R/reconstruct_pattern_multi.R | 1068 ++++++++++++++++++------------------ R/results_habitat_association.R | 518 ++++++++--------- R/unpack_randomized.R | 76 +- build/vignette.rds |binary inst/doc/get_started.R | 98 +-- inst/doc/get_started.html | 1076 ++++++++++++++++++------------------- man/calculate_energy.Rd | 128 ++-- man/classify_habitats.Rd | 2 man/get_dist_pairs.Rd | 52 - man/list_to_randomized.Rd | 4 man/pack_randomized.Rd | 4 man/plot.rd_mar.Rd | 128 ++-- man/plot.rd_pat.Rd | 128 ++-- man/plot.rd_ras.Rd | 2 man/plot_energy.Rd | 2 man/print.rd_pat.Rd | 2 man/print.rd_ras.Rd | 2 man/reconstruct_pattern.Rd | 244 ++++---- man/reconstruct_pattern_marks.Rd | 2 man/reconstruct_pattern_multi.Rd | 340 +++++------ man/results_habitat_association.Rd | 2 man/unpack_randomized.Rd | 2 38 files changed, 3601 insertions(+), 3597 deletions(-)
Title: Miscellaneous Functions for Panel Data, Quantiles, and Printing
Results
Description: These are miscellaneous functions for working with panel data, quantiles, and printing results. For panel data, the package includes functions for making a panel data balanced (that is, dropping missing individuals that have missing observations in any time period), converting id numbers to row numbers, and to treat repeated cross sections as panel data under the assumption of rank invariance. For quantiles, there are functions to make distribution functions from a set of data points (this is particularly useful when a distribution function is created in several steps), to combine distribution functions based on some external weights, and to invert distribution functions. Finally, there are several other miscellaneous functions for obtaining weighted means, weighted distribution functions, and weighted quantiles; to generate summary statistics and their differences for two groups; and to add or drop covariates from formulas.
Author: Brantly Callaway [aut, cre]
Maintainer: Brantly Callaway <brantly.callaway@uga.edu>
Diff between BMisc versions 1.4.6 dated 2024-03-09 and 1.4.7 dated 2025-01-10
DESCRIPTION | 10 MD5 | 48 ++- NAMESPACE | 14 + NEWS.md | 40 ++ R/BMisc.R | 559 +++++++++++++++++++++++++++++----------- R/imports.R | 12 R/zzz.R | 2 README.md | 2 man/BMisc.Rd | 15 + man/addCovToFormla.Rd | 2 man/blockBootSample.Rd | 13 man/check_staggered.Rd |only man/check_staggered_inner.Rd |only man/checkfun.Rd | 2 man/combineDfs.Rd | 10 man/dropCovFromFormla.Rd | 2 man/drop_collinear.Rd |only man/getListElement.Rd | 2 man/get_principal_components.Rd |only man/ids2rownum.Rd | 4 man/makeBalancedPanel.Rd | 10 man/makeDist.Rd | 2 man/mv_mult.Rd |only man/orig2t.Rd |only man/orig2t_inner.Rd |only man/subsample.Rd | 15 - man/t2orig.Rd |only man/t2orig_inner.Rd |only man/time_invariant_to_panel.Rd |only man/toformula.Rd | 2 30 files changed, 544 insertions(+), 222 deletions(-)
Title: Retrieving and Analyzing Air Quality and Weather Data from ARPA
Lombardia
Description: Contains functions for retrieving, managing and analysing air quality and weather data from Regione Lombardia open database (<https://www.dati.lombardia.it/>).
Data are collected by ARPA Lombardia (Lombardia Environmental Protection Agency), Italy, through its ground monitoring network (<https://www.dati.lombardia.it/stories/s/auv9-c2sj>).
See the webpage <https://www.arpalombardia.it/> for further information on ARPA Lombardia's activities and history.
Data quality (e.g. missing values, exported values, graphical mapping) has been checked involving members of the ARPA Lombardia's office for air quality control.
The package makes available observations since 1989 (for weather) and 1968 (for air quality) and are updated with daily frequency by the regional agency.
Full description of the package can be retrieved in the companion paper Maranzano \& Algieri (2024), "ARPALData: an R package for retrieving and analyzing air quality
and weather data from ARPA Lombardia [...truncated...]
Author: Paolo Maranzano [aut, cre, cph]
,
Andrea Algieri [aut, cph]
Maintainer: Paolo Maranzano <pmaranzano.ricercastatistica@gmail.com>
Diff between ARPALData versions 1.6.0 dated 2024-08-26 and 1.6.1 dated 2025-01-10
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NAMESPACE | 2 +- R/W_download_current.R | 2 +- R/get_ARPA_Lombardia_W_data.R | 29 ++++++++++++++++++++--------- R/url_AQ_year_dataset.R | 6 +++--- man/get_ARPA_Lombardia_W_data.Rd | 10 +++++----- 7 files changed, 40 insertions(+), 29 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-09 0.6.0
2022-01-13 0.5.0
2021-08-17 0.4.0
2021-07-12 0.3.0
2021-02-21 0.2.0
2020-09-25 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-04-21 0.1.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-12-19 1.0.4
2024-08-31 1.0.3
2024-06-07 1.0.2
2024-05-07 1.0.1
2024-05-03 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-12-06 1.7.4
2022-09-04 1.7.3
2021-01-11 1.7.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-11 0.2.6
2022-03-10 0.2.5
2021-12-06 0.2.4
2019-05-08 0.2.3
2018-11-13 0.2.2
2018-11-09 0.2.1
2018-11-08 0.2.0
2017-05-04 0.1.0
2017-01-19 0.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-18 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-22 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-04-25 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-18 0.3
2017-09-14 0.2
2016-09-18 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-23 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-05-09 3.4.2
2022-09-04 3.3.2
2022-04-18 3.3.1
2022-01-05 3.3.0
2021-04-21 3.2.1
2021-01-05 3.2.0
2020-04-24 3.0.0
2019-06-17 2.2.0
2019-04-25 2.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-03-09 0.1.12
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-06 0.1002
2016-12-25 0.1001
Title: Tidy Methods for Bayesian Treatment Effect Models
Description: Functions for extracting tidy data from Bayesian treatment effect models, in particular BART, but extensions are possible. Functionality includes extracting tidy posterior summaries as in 'tidybayes' <https://github.com/mjskay/tidybayes>, estimating (average) treatment effects, common support calculations, and plotting useful summaries of these.
Author: Joshua J Bon [aut, cre]
Maintainer: Joshua J Bon <joshuajbon@gmail.com>
Diff between tidytreatment versions 0.2.2 dated 2022-02-21 and 0.3.1 dated 2025-01-10
DESCRIPTION | 14 MD5 | 49 + NAMESPACE | 17 NEWS.md | 12 R/covariate-importance.R | 29 R/data.R | 26 R/simulate-su-hill.R | 11 R/tidy-posterior-bartCause.R |only R/tidy-posterior-stan4bart.R |only R/tidytreatment-package.R | 5 R/treatment-effects-bartCause.R |only R/utils-pipe.R |only README.md | 1 build/vignette.rds |binary data/suhillsim2_ranef.rda |only inst/doc/use-tidytreatment-BART.R | 160 ++--- inst/doc/use-tidytreatment-BART.html | 956 +++++++++++++++++++----------- inst/doc/use-tidytreatment-bartCause.R |only inst/doc/use-tidytreatment-bartCause.Rmd |only inst/doc/use-tidytreatment-bartCause.html |only man/epred_draws.bartcFit.Rd |only man/epred_draws.stan4bartFit.Rd |only man/highDim_testdataset3.Rd | 2 man/linpred_draws.bartcFit.Rd |only man/linpred_draws.stan4bartFit.Rd |only man/pipe.Rd |only man/predicted_draws.bartcFit.Rd |only man/predicted_draws.stan4bartFit.Rd |only man/simulate_su_hill_data.Rd | 6 man/suhillsim2_ranef.Rd |only man/tidy_draws.bartcFit.Rd |only man/tidytreatment.Rd | 13 man/treatment_effects.bartcFit.Rd |only vignettes/use-tidytreatment-bartCause.Rmd |only vignettes/vignette.bib | 11 35 files changed, 854 insertions(+), 458 deletions(-)
Title: Utility Functions for Multilevel Mediation Analysis
Description: The ultimate goal is to support 2-2-1, 2-1-1, and 1-1-1 models for
multilevel mediation, the option of a moderating variable for either the a, b,
or both paths, and covariates. Currently the 1-1-1 model is supported
and several options of random effects; the initial code for bootstrapping was
evaluated in simulations by Falk, Vogel, Hammami, and Miočević (2024) <doi:10.3758/s13428-023-02079-4>.
Support for Bayesian estimation using 'brms' comprises ongoing work. Currently
only continuous mediators and outcomes are supported. Factors for any
predictors must be numerically represented.
Author: Carl F. Falk [cre, aut],
Todd Vogel [aut],
Sarah Hammami [aut],
Milica Miocevic [aut]
Maintainer: Carl F. Falk <carl.falk@mcgill.ca>
Diff between multilevelmediation versions 0.3.1 dated 2024-02-29 and 0.4.1 dated 2025-01-10
DESCRIPTION | 16 MD5 | 38 NAMESPACE | 10 R/BPG06dat.R | 2 R/customboot.R | 30 R/modmedmlm.R | 148 ++ R/modmedmlmbrms.R | 62 - R/utils.R | 6 README.md | 18 build/partial.rdb |binary inst/CITATION | 10 man/BPG06dat.Rd | 2 man/modmed.mlm.Rd | 30 man/modmed.mlm.brms.Rd | 14 man/stack_bpg.Rd | 6 tests/testthat/_snaps/bootmodmedmlm.md | 514 +++++----- tests/testthat/_snaps/brms.md | 920 +++++++++--------- tests/testthat/_snaps/customboot.md | 486 ++++----- tests/testthat/_snaps/modmedmlm.md | 1650 ++++++++++++++++----------------- tests/testthat/test-customboot.R | 29 20 files changed, 2076 insertions(+), 1915 deletions(-)
More information about multilevelmediation at CRAN
Permanent link
Title: Landscape Metrics for Categorical Map Patterns
Description: Calculates landscape metrics for categorical landscape patterns in
a tidy workflow. 'landscapemetrics' reimplements the most common metrics from
'FRAGSTATS' (<https://www.fragstats.org/>) and new ones from the current
literature on landscape metrics. This package supports 'terra' SpatRaster objects
as input arguments. It further provides utility functions to visualize patches,
select metrics and building blocks to develop new metrics.
Author: Maximilian H.K. Hesselbarth [aut, cre]
,
Marco Sciaini [aut] ,
Jakub Nowosad [aut] ,
Sebastian Hanss [aut] ,
Laura J. Graham [ctb] ,
Jeffrey Hollister [ctb] ,
Kimberly A. With [ctb] ,
Florian Prive [ctb] function),
Project Nayuki [ctb] ,
Matt Strima [...truncated...]
Maintainer: Maximilian H.K. Hesselbarth <mhk.hesselbarth@gmail.com>
Diff between landscapemetrics versions 2.1.4 dated 2024-07-22 and 2.2 dated 2025-01-10
DESCRIPTION | 6 - MD5 | 33 +++++----- NAMESPACE | 1 NEWS.md | 6 + R/construct_buffer.R | 7 -- R/extract_lsm.R | 5 - R/points_as_mat.R | 9 +- R/sample_lsm.R | 98 +++++++++++++++---------------- R/scale_sample.R |only build/vignette.rds |binary inst/doc/get_started.html | 6 - man/construct_buffer.Rd | 6 - man/extract_lsm.Rd | 2 man/figures/README-unnamed-chunk-2-1.png |binary man/points_as_mat.Rd | 2 man/sample_lsm.Rd | 2 man/scale_sample.Rd |only tests/testthat/test-sample-lsm.R | 2 tests/testthat/test-scale-sample.R |only 19 files changed, 98 insertions(+), 87 deletions(-)
More information about landscapemetrics at CRAN
Permanent link
Title: Approximate String Matching, Fuzzy Text Search, and String
Distance Functions
Description: Implements an approximate string matching version of R's native
'match' function. Also offers fuzzy text search based on various string
distance measures. Can calculate various string distances based on edits
(Damerau-Levenshtein, Hamming, Levenshtein, optimal sting alignment), qgrams (q-
gram, cosine, jaccard distance) or heuristic metrics (Jaro, Jaro-Winkler). An
implementation of soundex is provided as well. Distances can be computed between
character vectors while taking proper care of encoding or between integer
vectors representing generic sequences. This package is built for speed and
runs in parallel by using 'openMP'. An API for C or C++ is exposed as well.
Reference: MPJ van der Loo (2014) <doi:10.32614/RJ-2014-011>.
Author: Mark van der Loo [aut, cre] ,
Jan van der Laan [ctb],
R Core Team [ctb],
Nick Logan [ctb],
Chris Muir [ctb],
Johannes Gruber [ctb],
Brian Ripley [ctb]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between stringdist versions 0.9.14 dated 2024-12-10 and 0.9.15 dated 2025-01-10
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NEWS | 5 +++++ R/afind.R | 2 ++ R/amatch.R | 4 ++++ R/seqdist.R | 2 ++ R/stringdist.R | 6 +++++- inst/doc/RJournal_6_111-122-2014.pdf |binary inst/doc/stringdist_C-Cpp_api.pdf |binary inst/tinytest/test_afind.R | 11 +++++++++++ inst/tinytest/test_amatch.R | 11 +++++++++++ inst/tinytest/test_seq_dist.R | 6 ++++++ inst/tinytest/test_stringdist.R | 8 ++++++++ 13 files changed, 69 insertions(+), 16 deletions(-)
Title: 'R' Bindings for 'TMB'
Description: Native 'R' interface to 'TMB' (Template Model Builder) so models can be written entirely in 'R' rather than 'C++'. Automatic differentiation, to any order, is available for a rich subset of 'R' features, including linear algebra for dense and sparse matrices, complex arithmetic, Fast Fourier Transform, probability distributions and special functions. 'RTMB' provides easy access to model fitting and validation following the principles of Kristensen, K., Nielsen, A., Berg, C. W., Skaug, H., & Bell, B. M. (2016) <DOI:10.18637/jss.v070.i05> and Thygesen, U.H., Albertsen, C.M., Berg, C.W. et al. (2017) <DOI:10.1007/s10651-017-0372-4>.
Author: Kasper Kristensen [aut, cre]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>
Diff between RTMB versions 1.6 dated 2024-09-11 and 1.7 dated 2025-01-10
DESCRIPTION | 8 MD5 | 62 +++-- NAMESPACE | 5 R/00roxygen.R | 12 + R/RcppExports.R | 20 + R/advector.R | 33 ++- R/distributions.R | 82 ++----- R/expAv.R | 12 - R/methods.R | 46 ++++ R/mvgauss.R | 10 inst/doc/RTMB-advanced.html | 4 inst/doc/RTMB-introduction.html | 4 inst/include/CallRTMB.hpp |only inst/include/RTMB.h | 43 +++- inst/include/RTMB_stubs.cpp | 94 ++++++-- inst/include/TMB.h | 5 man/AD.Rd | 2 man/ADmatrix.Rd | 17 + man/ADsparse.Rd |only man/ADvector.Rd | 16 + man/Distributions.Rd | 38 ++- man/expAv.Rd | 7 src/RTMB.cpp | 91 +++++--- src/RTMB.h | 37 ++- src/RTMB_tape.cpp | 65 ++---- src/RcppExports.cpp | 425 +++++++++++++++++++++------------------- src/TMB.h | 5 src/distributions.cpp | 248 ++++++++++++----------- src/interpol.cpp | 31 +- src/math.cpp | 158 ++++++++------ src/math_complex.cpp | 10 src/misc.cpp | 37 +-- src/poshess.cpp | 10 33 files changed, 976 insertions(+), 661 deletions(-)
Title: SDTM Datacut
Description: Supports the process of applying a cut to Standard Data Tabulation Model (SDTM),
as part of the analysis of specific points in time of the data, normally as part of
investigation into clinical trials. The functions support different approaches of
cutting to the different domains of SDTM normally observed.
Author: Tim Barnett [cph, aut, cre],
Nathan Rees [aut],
Alana Harris [aut],
Cara Andrews [aut]
Maintainer: Tim Barnett <timothy.barnett@roche.com>
Diff between datacutr versions 0.2.1 dated 2024-12-18 and 0.2.2 dated 2025-01-10
DESCRIPTION | 6 +-- MD5 | 10 ++--- NEWS.md | 8 ++++ inst/doc/variable_cut.html | 24 ++++++------ tests/testthat/test-process_cut.R | 21 ++++++----- tests/testthat/test-read_out.R | 71 ++++++++++++++++++++++++++++---------- 6 files changed, 94 insertions(+), 46 deletions(-)
Title: Mesh Generation and Surface Tessellation
Description: Makes the 'Qhull' library <http://www.qhull.org>
available in R, in a similar manner as in Octave and MATLAB. Qhull
computes convex hulls, Delaunay triangulations, halfspace
intersections about a point, Voronoi diagrams, furthest-site
Delaunay triangulations, and furthest-site Voronoi diagrams. It
runs in 2D, 3D, 4D, and higher dimensions. It implements the
Quickhull algorithm for computing the convex hull. Qhull does not
support constrained Delaunay triangulations, or mesh generation of
non-convex objects, but the package does include some R functions
that allow for this.
Author: Jean-Romain Roussel [cph, ctb] ,
C. B. Barber [cph],
Kai Habel [cph, aut],
Raoul Grasman [cph, aut],
Robert B. Gramacy [cph, aut],
Pavlo Mozharovskyi [cph, aut],
David C. Sterratt [cph, aut, cre]
Maintainer: David C. Sterratt <david.c.sterratt@ed.ac.uk>
Diff between geometry versions 0.5.0 dated 2024-08-31 and 0.5.1 dated 2025-01-10
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- NEWS | 11 +++++++++++ build/vignette.rds |binary inst/doc/qhull-eg.pdf |binary src/global_r.c | 8 ++++---- src/io_r.c | 2 +- src/libqhull_r.h | 2 +- src/qset_r.c | 8 ++++---- src/qset_r.h | 11 ++++++++++- src/stat_r.c | 10 +++++----- 11 files changed, 51 insertions(+), 31 deletions(-)
Title: Easy Data Wrangling and Statistical Transformations
Description: A lightweight package to assist in key steps involved in any data
analysis workflow: (1) wrangling the raw data to get it in the needed form,
(2) applying preprocessing steps and statistical transformations, and
(3) compute statistical summaries of data properties and distributions.
It is also the data wrangling backend for packages in 'easystats' ecosystem.
References: Patil et al. (2022) <doi:10.21105/joss.04684>.
Author: Indrajeet Patil [aut] ,
Etienne Bacher [aut, cre] ,
Dominique Makowski [aut] ,
Daniel Luedecke [aut] ,
Mattan S. Ben-Shachar [aut] ,
Brenton M. Wiernik [aut] ,
Remi Theriault [ctb] ,
Thomas J. Faulkenberry [rev],
Robert Garrett [rev]
Maintainer: Etienne Bacher <etienne.bacher@protonmail.com>
Diff between datawizard versions 0.13.0 dated 2024-10-05 and 1.0.0 dated 2025-01-10
DESCRIPTION | 10 MD5 | 250 ++++++++++---------- NAMESPACE | 3 NEWS.md | 74 +++++ R/adjust.R | 12 R/categorize.R | 1 R/data_addprefix.R | 12 R/data_arrange.R | 4 R/data_codebook.R | 6 R/data_group.R | 2 R/data_match.R | 20 + R/data_modify.R | 21 + R/data_read.R | 48 +-- R/data_relocate.R | 1 R/data_rename.R | 263 +++++++++++++++------ R/data_rescale.R | 21 - R/data_reverse.R | 3 R/data_rotate.R | 3 R/data_summary.R | 27 +- R/data_tabulate.R | 11 R/data_to_long.R | 9 R/data_write.R | 2 R/data_xtabulate.R | 234 ++++++++++++------ R/demean.R | 36 ++ R/describe_distribution.R | 27 +- R/descriptives.R | 2 R/extract_column_names.R | 29 +- R/normalize.R | 1 R/ranktransform.R | 59 +++- R/rescale_weights.R | 348 +++++++++++++++++++++------- R/row_count.R |only R/row_means.R | 142 ++++++++--- R/select_nse.R | 186 ++++++++++---- R/skewness_kurtosis.R | 2 R/smoothness.R | 20 - R/standardize.R | 4 R/standardize.models.R | 48 +-- R/text_format.R | 3 R/to_numeric.R | 1 R/unstandardize.R | 8 R/utils-cols.R | 2 R/utils-rows.R | 1 R/utils.R | 23 + R/visualisation_recipe.R | 1 README.md | 140 +++-------- inst/WORDLIST | 14 - man/adjust.Rd | 25 +- man/assign_labels.Rd | 21 + man/categorize.Rd | 32 +- man/center.Rd | 21 + man/convert_na_to.Rd | 21 + man/convert_to_na.Rd | 21 + man/data_codebook.Rd | 24 + man/data_duplicated.Rd | 21 + man/data_extract.Rd | 21 + man/data_group.Rd | 21 + man/data_match.Rd | 25 +- man/data_merge.Rd | 11 man/data_modify.Rd | 6 man/data_partition.Rd | 13 - man/data_peek.Rd | 21 + man/data_prefix_suffix.Rd |only man/data_read.Rd | 32 +- man/data_relocate.Rd | 32 +- man/data_rename.Rd | 167 ++++++------- man/data_replicate.Rd | 21 + man/data_rotate.Rd | 11 man/data_separate.Rd | 21 + man/data_summary.Rd | 6 man/data_tabulate.Rd | 24 + man/data_to_long.Rd | 34 +- man/data_to_wide.Rd | 11 man/data_unique.Rd | 21 + man/data_unite.Rd | 21 + man/demean.Rd | 15 - man/describe_distribution.Rd | 21 + man/extract_column_names.Rd | 40 ++- man/labels_to_levels.Rd | 21 + man/means_by_group.Rd | 21 + man/normalize.Rd | 21 + man/ranktransform.Rd | 42 ++- man/recode_values.Rd | 32 +- man/rescale.Rd | 22 + man/rescale_weights.Rd | 193 ++++++++++----- man/reverse.Rd | 21 + man/row_count.Rd |only man/row_means.Rd | 76 ++++-- man/slide.Rd | 32 +- man/standardize.Rd | 21 + man/text_format.Rd | 9 man/to_factor.Rd | 21 + man/to_numeric.Rd | 21 + man/winsorize.Rd | 11 tests/testthat/_snaps/data_codebook.md | 264 +++++++++++++++++++++ tests/testthat/_snaps/data_tabulate.md | 128 ++++++---- tests/testthat/_snaps/demean.md | 29 ++ tests/testthat/_snaps/rescale_weights.md | 237 +++++++++++++------ tests/testthat/test-adjust.R | 10 tests/testthat/test-attributes-grouped-df.R | 4 tests/testthat/test-attributes.R | 18 - tests/testthat/test-categorize.R | 1 tests/testthat/test-center.R | 1 tests/testthat/test-convert_na_to.R | 10 tests/testthat/test-data_codebook.R | 32 +- tests/testthat/test-data_match.R | 4 tests/testthat/test-data_modify.R | 52 ++++ tests/testthat/test-data_read.R | 49 ++- tests/testthat/test-data_recode.R | 5 tests/testthat/test-data_relocate.R | 1 tests/testthat/test-data_rename.R | 201 +++++++++++----- tests/testthat/test-data_rescale.R | 1 tests/testthat/test-data_reverse.R | 5 tests/testthat/test-data_select.R | 11 tests/testthat/test-data_summary.R | 23 + tests/testthat/test-data_tabulate.R | 7 tests/testthat/test-data_to_factor.R | 1 tests/testthat/test-data_to_long.R | 7 tests/testthat/test-data_to_wide.R | 3 tests/testthat/test-data_write.R | 3 tests/testthat/test-demean.R | 28 +- tests/testthat/test-describe_distribution.R | 19 + tests/testthat/test-labelled_data.R | 16 - tests/testthat/test-ranktransform.R | 26 +- tests/testthat/test-rescale_weights.R | 107 ++++++++ tests/testthat/test-row_count.R |only tests/testthat/test-row_means.R | 11 tests/testthat/test-select_nse.R | 21 + tests/testthat/test-standardize_models.R | 36 ++ 128 files changed, 3314 insertions(+), 1536 deletions(-)
Title: Explanation Groves
Description: Compute surrogate explanation groves for predictive machine learning models and analyze complexity vs. explanatory power of an explanation according to Szepannek, G. and von Holt, B. (2023) <doi:10.1007/s41237-023-00205-2>.
Author: Gero Szepannek [aut, cre]
Maintainer: Gero Szepannek <gero.szepannek@web.de>
Diff between xgrove versions 0.1-13 dated 2024-09-22 and 0.1-15 dated 2025-01-10
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 7 +++++++ NEWS | 10 ++++++---- R/xgrove.R | 45 +++++++++++++++++++++++++++++++++++++++++---- man/plot.xgrove.Rd | 7 ++++++- 6 files changed, 70 insertions(+), 19 deletions(-)
Title: Interfaces to Various State-of-Art SVD and Eigensolvers
Description: R bindings to SVD and eigensolvers (PROPACK, nuTRLan).
Author: Anton Korobeynikov [aut, cre],
Rasmus Munk Larsen [ctb, cph],
Lawrence Berkeley National Laboratory [ctb, cph]
Maintainer: Anton Korobeynikov <anton@korobeynikov.info>
Diff between svd versions 0.5.7 dated 2024-09-28 and 0.5.8 dated 2025-01-10
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/propack/dlansvd_irl.f | 9 ++++----- 3 files changed, 9 insertions(+), 10 deletions(-)
Title: Reproducible Data Science Environments with 'Nix'
Description: Simplifies the creation of reproducible data science environments
using the 'Nix' package manager, as described in
Dolstra (2006) <ISBN 90-393-4130-3>. The included `rix()`
function generates a complete description of the environment as a
`default.nix` file, which can then be built using 'Nix'. This results in
project specific software environments with pinned versions of R, packages,
linked system dependencies, and other tools. Additional helpers make it easy
to run R code in 'Nix' software environments for testing and production.
Author: Bruno Rodrigues [aut, cre] ,
Philipp Baumann [aut] ,
David Watkins [rev] for
rOpenSci, see
<https://github.com/ropensci/software-review/issues/625>),
Jacob Wujiciak-Jens [rev] for rOpenSci, see
<https://github.com/ropensci/software-review/issues/62 [...truncated...]
Maintainer: Bruno Rodrigues <bruno@brodrigues.co>
Diff between rix versions 0.12.4 dated 2024-10-02 and 0.14.3 dated 2025-01-10
rix-0.12.4/rix/R/included-datasets.R |only rix-0.12.4/rix/man/generate_rpkgs.Rd |only rix-0.12.4/rix/tests/testthat/_snaps/rix/bleeding_edge_default.nix |only rix-0.12.4/rix/tests/testthat/_snaps/rix/frozen_edge_default.nix |only rix-0.14.3/rix/DESCRIPTION | 33 rix-0.14.3/rix/MD5 | 228 +++-- rix-0.14.3/rix/NAMESPACE | 6 rix-0.14.3/rix/NEWS.md | 79 + rix-0.14.3/rix/R/available_r.R | 53 + rix-0.14.3/rix/R/fetchers.R | 192 +++- rix-0.14.3/rix/R/ga_cachix.R | 6 rix-0.14.3/rix/R/get_latest.R | 57 + rix-0.14.3/rix/R/make_nixpkgs_url.R | 39 rix-0.14.3/rix/R/nix_hash.R | 36 rix-0.14.3/rix/R/renv_helpers.R |only rix-0.14.3/rix/R/rix.R | 132 +-- rix-0.14.3/rix/R/rix_helpers.R | 27 rix-0.14.3/rix/R/setup_cachix.R |only rix-0.14.3/rix/R/tar_nix_ga.R | 6 rix-0.14.3/rix/R/zzz.R | 26 rix-0.14.3/rix/README.md | 203 ++++ rix-0.14.3/rix/build/vignette.rds |binary rix-0.14.3/rix/inst/doc/a-getting-started.R | 24 rix-0.14.3/rix/inst/doc/a-getting-started.Rmd | 88 +- rix-0.14.3/rix/inst/doc/a-getting-started.html | 75 + rix-0.14.3/rix/inst/doc/b1-setting-up-and-using-rix-on-linux-and-windows.R | 52 - rix-0.14.3/rix/inst/doc/b1-setting-up-and-using-rix-on-linux-and-windows.Rmd | 58 + rix-0.14.3/rix/inst/doc/b1-setting-up-and-using-rix-on-linux-and-windows.html | 99 +- rix-0.14.3/rix/inst/doc/b2-setting-up-and-using-rix-on-macos.R | 8 rix-0.14.3/rix/inst/doc/b2-setting-up-and-using-rix-on-macos.Rmd | 70 + rix-0.14.3/rix/inst/doc/b2-setting-up-and-using-rix-on-macos.html | 85 + rix-0.14.3/rix/inst/doc/c-using-rix-to-build-project-specific-environments.R | 122 +- rix-0.14.3/rix/inst/doc/c-using-rix-to-build-project-specific-environments.Rmd | 242 ++++- rix-0.14.3/rix/inst/doc/c-using-rix-to-build-project-specific-environments.html | 304 ++++-- rix-0.14.3/rix/inst/doc/d1-installing-r-packages-in-a-nix-environment.R | 116 +- rix-0.14.3/rix/inst/doc/d1-installing-r-packages-in-a-nix-environment.Rmd | 379 +++++++- 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rix-0.14.3/rix/vignettes/d1-installing-r-packages-in-a-nix-environment.Rmd | 379 +++++++- rix-0.14.3/rix/vignettes/d2-installing-system-tools-and-texlive-packages-in-a-nix-environment.Rmd | 11 rix-0.14.3/rix/vignettes/e-interactive-use.Rmd | 6 rix-0.14.3/rix/vignettes/f-renv2nix.Rmd |only rix-0.14.3/rix/vignettes/z-advanced-topic-building-an-environment-for-literate-programming.Rmd | 6 rix-0.14.3/rix/vignettes/z-advanced-topic-handling-packages-with-remote-dependencies.Rmd | 435 +++++++-- rix-0.14.3/rix/vignettes/z-advanced-topic-reproducible-analytical-pipelines-with-nix.Rmd | 89 +- rix-0.14.3/rix/vignettes/z-advanced-topic-running-r-or-shell-code-in-nix-from-r.Rmd | 88 -- rix-0.14.3/rix/vignettes/z-advanced-topic-using-nix-inside-docker.Rmd | 16 rix-0.14.3/rix/vignettes/z-binary_cache.Rmd | 32 rix-0.14.3/rix/vignettes/z-bleeding_edge.Rmd | 167 +++ rix-0.14.3/rix/vignettes/z-contributing_to_nixpkgs.Rmd | 8 124 files changed, 5659 insertions(+), 2600 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-19 3.0-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-02 0.9-0.4
2024-08-27 0.9-0.1
2024-08-23 0.9-0
2023-11-28 0.8-0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-28 1.1.5
2015-10-07 1.1.4
2015-03-25 1.1.3
2015-01-20 1.1.1
2014-05-11 1.1.0
2014-03-05 1.0.11
2014-02-06 1.0.10
2014-02-02 1.0.9
2013-05-14 1.0.8
2013-04-16 1.0.7
2012-11-02 1.0.6
2012-08-01 1.0.5
2012-04-13 1.0.4
2011-07-29 1.0.3
2011-05-24 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-22 1.4-1
2018-12-13 1.4
2017-09-04 1.3-1
2017-06-07 1.3
2016-09-19 1.2
2016-04-20 1.1
2015-01-01 1.0-2.1
2014-12-23 1.0-2
2014-10-13 1.0-1
2014-10-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-03-04 0.1.61
2023-02-16 0.1.6
2023-02-03 0.1.5
2020-09-29 0.1.4
2020-04-14 0.1.3
2019-09-12 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-09 1.6.1
2022-05-26 1.5.1
2022-05-26 1.5.2
2022-05-10 1.4.1
2022-03-16 1.3.5
2022-02-04 1.3.4
2022-01-28 1.3.2
2022-01-07 1.2.3
2022-01-05 1.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-04-18 0.2.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-05-19 2.0.6
2021-11-22 2.0.5
2021-10-28 2.0.4
2021-09-08 2.0.3
2021-08-03 2.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-04-18 0.1.2
2022-10-14 0.1.1
2022-10-12 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-06-07 2.9.7
2022-12-06 2.7.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-29 0.7.0
2023-10-19 0.6.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-06-14 1.1.1
2023-06-12 1.1.0
2022-04-25 1.0.0
2022-04-06 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-12 0.1.1
2021-01-08 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-06-12 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-12-07 1.0.8
2023-03-06 1.0.7
2022-05-25 1.0.6
2022-01-20 1.0.5
2021-09-14 1.0.4
2021-06-28 1.0.2
2021-06-18 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-05 2.1.2
2020-02-12 2.1.1
2019-08-19 1.9
2019-08-19 1.9.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-12-08 2024.12.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-06-28 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-29 1.4.3
2015-10-22 1.4.2
2014-06-21 1.4.1
2014-05-12 1.4.0
2014-02-06 1.3.1
2013-05-02 1.3.0
2013-01-11 1.2.1
2012-09-28 1.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-20 0.1.4
2024-03-03 0.1.3
2024-01-10 0.1.2
2023-09-01 0.1.1