Title: Data Only Package to 'healthyR'
Description: Provides data for functions typically used in the 'healthyR' package.
Author: Steven Sanderson [aut, cre, cph]
Maintainer: Steven Sanderson <spsanderson@gmail.com>
Diff between healthyR.data versions 1.1.1 dated 2024-07-04 and 1.2.0 dated 2025-01-12
DESCRIPTION | 6 ++-- MD5 | 8 ++--- NEWS.md | 13 ++++++++- R/utils-valid-url.R | 74 ++++++++++++++++++++++++++-------------------------- README.md | 3 -- 5 files changed, 57 insertions(+), 47 deletions(-)
Title: Functional Analysis of Phenotypic Growth Data to Smooth and
Extract Traits
Description: Assists in the plotting and functional smoothing of traits
measured over time and the extraction of features from these traits,
implementing the SET (Smoothing and Extraction of Traits) method
described in Brien et al. (2020) Plant Methods, 16. Smoothing of
growth trends for individual plants using natural cubic smoothing
splines or P-splines is available for removing transient effects and
segmented smoothing is available to deal with discontinuities in
growth trends. There are graphical tools for assessing the adequacy
of trait smoothing, both when using this and other packages, such as
those that fit nonlinear growth models. A range of per-unit (plant,
pot, plot) growth traits or features can be extracted from the
data, including single time points, interval growth rates and other
growth statistics, such as maximum growth or days to maximum growth.
The package also has tools adapted to inputting data from
high-throughput phenotyping facilities, such from a Lemna-Tec
Scananalyzer 3D ( [...truncated...]
Author: Chris Brien [aut, cre]
Maintainer: Chris Brien <chris.brien@adelaide.edu.au>
Diff between growthPheno versions 2.1.25 dated 2024-07-24 and 3.1.10 dated 2025-01-12
growthPheno-2.1.25/growthPheno/R/dataLongi_v9.r |only growthPheno-2.1.25/growthPheno/R/softDeprec.r |only growthPheno-2.1.25/growthPheno/man/fitSpline.Rd |only growthPheno-2.1.25/growthPheno/man/intervalGRaverage.Rd |only growthPheno-2.1.25/growthPheno/man/intervalGRdiff.Rd |only growthPheno-2.1.25/growthPheno/man/intervalValueCalculate.Rd |only growthPheno-2.1.25/growthPheno/man/intervalWUI.Rd |only growthPheno-2.1.25/growthPheno/man/longitudinalPrime.Rd |only growthPheno-2.1.25/growthPheno/man/plotLongitudinal.Rd |only growthPheno-2.1.25/growthPheno/man/plotMedianDeviations.Rd |only growthPheno-2.1.25/growthPheno/man/probeSmoothing.Rd |only growthPheno-2.1.25/growthPheno/man/splitContGRdiff.Rd |only growthPheno-2.1.25/growthPheno/man/splitSplines.Rd |only growthPheno-2.1.25/growthPheno/man/splitValueCalculate.Rd |only growthPheno-2.1.25/growthPheno/tests/testthat/testProbeSmoothing.r |only growthPheno-2.1.25/growthPheno/tests/testthat/testSplines.r |only growthPheno-3.1.10/growthPheno/DESCRIPTION | 8 growthPheno-3.1.10/growthPheno/MD5 | 73 ++---- growthPheno-3.1.10/growthPheno/NAMESPACE | 2 growthPheno-3.1.10/growthPheno/R/PVA.v3.r | 55 +++-- growthPheno-3.1.10/growthPheno/R/S3methodsDeprecations.r | 71 ++++++ growthPheno-3.1.10/growthPheno/R/dataLongi_v10.r |only growthPheno-3.1.10/growthPheno/build/partial.rdb |binary growthPheno-3.1.10/growthPheno/build/vignette.rds |binary growthPheno-3.1.10/growthPheno/inst/News.Rd | 15 + growthPheno-3.1.10/growthPheno/inst/doc/Rice.pdf |binary growthPheno-3.1.10/growthPheno/inst/doc/Tomato.pdf |binary growthPheno-3.1.10/growthPheno/inst/doc/growthPheno-manual.pdf |binary growthPheno-3.1.10/growthPheno/man/byIndv4Intvl_GRsAvg.Rd | 4 growthPheno-3.1.10/growthPheno/man/byIndv4Intvl_GRsDiff.Rd | 2 growthPheno-3.1.10/growthPheno/man/byIndv4Intvl_ValueCalc.Rd | 2 growthPheno-3.1.10/growthPheno/man/byIndv4Intvl_WaterUse.Rd | 8 growthPheno-3.1.10/growthPheno/man/byIndv4Times_SplinesGRs.Rd | 4 growthPheno-3.1.10/growthPheno/man/growthPheno-deprecated.Rd | 36 +++ growthPheno-3.1.10/growthPheno/man/growthPheno-pkg.Rd | 3 growthPheno-3.1.10/growthPheno/man/plotAnom.Rd | 2 growthPheno-3.1.10/growthPheno/man/plotCorrmatrix.Rd | 36 +-- growthPheno-3.1.10/growthPheno/man/plotDeviationsBoxes.Rd | 2 growthPheno-3.1.10/growthPheno/man/smoothSpline.Rd | 2 growthPheno-3.1.10/growthPheno/man/traitExtractFeatures.Rd | 3 growthPheno-3.1.10/growthPheno/tests/testthat/testContGRdiff.r | 5 growthPheno-3.1.10/growthPheno/tests/testthat/testCorrPlot.r | 52 ++++ growthPheno-3.1.10/growthPheno/tests/testthat/testbyIndv4Times.r | 108 +++++----- growthPheno-3.1.10/growthPheno/tests/testthat/testexampleData.r | 9 growthPheno-3.1.10/growthPheno/tests/testthat/testprepImageData.r |only growthPheno-3.1.10/growthPheno/tests/testthat/testsmoothSpline.R | 2 growthPheno-3.1.10/growthPheno/tests/testthat/testthat-problems.rds |only 47 files changed, 337 insertions(+), 167 deletions(-)
Title: Work with Open Road Traffic Casualty Data from Great Britain
Description: Tools to help download, process and analyse the UK road collision data collected using the
'STATS19' form. The datasets are provided as 'CSV' files with detailed road safety information about the
circumstances of car crashes and other incidents on the roads resulting in casualties in Great Britain
from 1979 to present. Tables are available on 'colissions' with the circumstances (e.g. speed limit
of road), information about 'vehicles' involved (e.g. type of vehicle), and 'casualties' (e.g. age).
The statistics relate only to events on public roads that were reported
to the police, and subsequently recorded, using the 'STATS19' collision reporting form. See
the Department for Transport website
<https://www.data.gov.uk/dataset/cb7ae6f0-4be6-4935-9277-47e5ce24a11f/road-accidents-safety-data> for more
information on these datasets.
The package is described in a paper in the Journal of Open Source Software
(Lovelace et al. 2019) <doi:10.21105/joss.01181>.
See
Gilardi et al. (202 [...truncated...]
Author: Robin Lovelace [aut, cre] ,
Malcolm Morgan [aut] ,
Layik Hama [aut] ,
Mark Padgham [aut] ,
David Ranzolin [rev],
Adam Sparks [rev, ctb] ,
Ivo Wengraf [ctb],
RAC Foundation [fnd]
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between stats19 versions 3.2.0 dated 2024-10-24 and 3.3.0 dated 2025-01-12
DESCRIPTION | 14 MD5 | 66 - NEWS.md | 5 R/dl.R | 2 R/format.R | 28 README.md | 7 build/vignette.rds |binary data/accidents_sample.rda |binary data/accidents_sample_raw.rda |binary data/casualties_sample.rda |binary data/file_names.rda |binary data/file_names_old.rda |binary data/stats19_schema.rda |binary data/stats19_variables.rda |binary data/vehicles_sample.rda |binary inst/doc/blog.R | 292 +++--- inst/doc/blog.Rmd | 4 inst/doc/blog.html | 659 +++++-------- inst/doc/stats19-training-setup.R | 44 inst/doc/stats19-training-setup.Rmd | 3 inst/doc/stats19-training-setup.html | 250 ++--- inst/doc/stats19-training.R | 534 +++++------ inst/doc/stats19-training.html | 1266 +++++++++----------------- inst/doc/stats19-vehicles.R | 230 ++-- inst/doc/stats19-vehicles.html | 243 ++--- inst/doc/stats19.R | 59 - inst/doc/stats19.Rmd | 27 inst/doc/stats19.html | 1648 ++++++++++++++++------------------- man/dl_stats19.Rd | 4 man/format_collisions.Rd | 14 man/get_stats19.Rd | 10 vignettes/blog.Rmd | 4 vignettes/stats19-training-setup.Rmd | 3 vignettes/stats19.Rmd | 27 34 files changed, 2400 insertions(+), 3043 deletions(-)
Title: Memory-Efficient Storage of Large Data on Disk and Fast Access
Functions
Description: The ff package provides data structures that are stored on
disk but behave (almost) as if they were in RAM by transparently
mapping only a section (pagesize) in main memory - the effective
virtual memory consumption per ff object. ff supports R's standard
atomic data types 'double', 'logical', 'raw' and 'integer' and
non-standard atomic types boolean (1 bit), quad (2 bit unsigned),
nibble (4 bit unsigned), byte (1 byte signed with NAs), ubyte (1 byte
unsigned), short (2 byte signed with NAs), ushort (2 byte unsigned),
single (4 byte float with NAs). For example 'quad' allows efficient
storage of genomic data as an 'A','T','G','C' factor. The unsigned
types support 'circular' arithmetic. There is also support for
close-to-atomic types 'factor', 'ordered', 'POSIXct', 'Date' and
custom close-to-atomic types.
ff not only has native C-support for vectors, matrices and arrays
with flexible dimorder (major column-order, major row-order and
generalizations for arrays). There is also a ffdf cla [...truncated...]
Author: Daniel Adler [aut],
Christian Glaeser [ctb],
Oleg Nenadic [ctb],
Jens Oehlschlaegel [aut, cre],
Martijn Schuemie [ctb],
Walter Zucchini [ctb]
Maintainer: Jens Oehlschlaegel <Jens.Oehlschlaegel@truecluster.com>
Diff between ff versions 4.5.0 dated 2024-09-20 and 4.5.2 dated 2025-01-12
DESCRIPTION | 10 ++--- MD5 | 14 +++---- NEWS | 19 +++++++++ R/ff.R | 1 R/hi.R | 92 ++++++++++++++++++++++++++---------------------- R/zzz.R | 4 +- src/MMapFileMapping.cpp | 2 - src/r_ff_addgetset.h | 13 +++++- 8 files changed, 94 insertions(+), 61 deletions(-)
Title: Object Oriented Implementation of Distributions
Description: S4-classes and methods for distributions.
Author: Florian Camphausen [ctb] ,
Matthias Kohl [aut, cph],
Peter Ruckdeschel [cre, cph],
Thomas Stabla [ctb] ,
R Core Team [ctb, cph]
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between distr versions 2.9.5 dated 2024-08-29 and 2.9.7 dated 2025-01-12
DESCRIPTION | 18 ++++----- MD5 | 18 ++++----- R/makedots.R | 2 - R/plot-methods.R | 9 ++-- inst/NEWS | 12 ++++++ inst/doc/newDistributions-knitr.Rnw | 5 +- inst/doc/newDistributions-knitr.pdf |binary man/0distr-package.Rd | 8 ++-- tests/Examples/distr-Ex.Rout.save | 65 ++++++++++++++++------------------- vignettes/newDistributions-knitr.Rnw | 5 +- 10 files changed, 77 insertions(+), 65 deletions(-)
Title: Access Data from the Atlas do Estado Brasileiro
Description: Facilitates access to the data from the Atlas do Estado Brasileiro
(<https://www.ipea.gov.br/atlasestado/>), maintained by the Instituto de
Pesquisa Econômica Aplicada (Ipea). It allows users to search for specific
series, list series or themes, and download data when available.
Author: Hugo Macedo [aut, cre, cph]
Maintainer: Hugo Macedo <aebdata@hhmace.do>
Diff between aebdata versions 0.1.2 dated 2024-11-08 and 0.1.3 dated 2025-01-12
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 2 ++ inst/doc/exploring-data.html | 22 +++++++++++----------- tests/testthat/_data/search.rds |binary 5 files changed, 20 insertions(+), 18 deletions(-)
Title: Libraries, Data Dictionaries, and a Data Step for R
Description: Contains a set of functions to create data libraries,
generate data dictionaries, and simulate a data step.
The libname() function will load a directory of data into
a library in one line of code. The dictionary() function
will generate data dictionaries for individual
data frames or an entire library. And the datestep() function
will perform row-by-row data processing.
Author: David Bosak [aut, cre],
Brian Varney [ctb],
Archytas Clinical Solutions [cph]
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between libr versions 1.3.8 dated 2024-12-13 and 1.3.9 dated 2025-01-12
libr-1.3.8/libr/tests/testthat/data/CRF/lab.sas7bdat |only libr-1.3.8/libr/tests/testthat/data/SDTM/DS_IHOR.csv |only libr-1.3.8/libr/tests/testthat/data/SDTM/QS.csv |only libr-1.3.8/libr/tests/testthat/data/SDTM/ds_ihor.sas7bdat |only libr-1.3.8/libr/tests/testthat/data/SDTM/qs.sas7bdat |only libr-1.3.9/libr/DESCRIPTION | 6 ++-- libr-1.3.9/libr/MD5 | 17 ++++---------- libr-1.3.9/libr/NEWS.md | 3 ++ libr-1.3.9/libr/R/utilities.R | 2 - libr-1.3.9/libr/tests/testthat/test-libname.R | 2 - libr-1.3.9/libr/tests/testthat/test-manipulation.R | 4 +-- libr-1.3.9/libr/tests/testthat/test-specs.R | 5 ++-- 12 files changed, 19 insertions(+), 20 deletions(-)
Title: Board Game Graphics
Description: Functions to make board game graphics with the 'ggplot2', 'grid', 'rayrender', 'rayvertex', and 'rgl' packages. Specializes in game diagrams, animations, and "Print & Play" layouts for the 'piecepack' <https://www.ludism.org/ppwiki> but can make graphics for other board game systems. Includes configurations for several public domain game systems such as checkers, (double-18) dominoes, go, 'piecepack', playing cards, etc.
Author: Trevor L. Davis [aut, cre] ,
Linux Foundation [dtc] ,
Delapouite <https://delapouite.com/> [ill] ,
Creative Commons [ill] ` uses "license badges"
from Creative Commons to describe the generated print-and-play
file's license)
Maintainer: Trevor L. Davis <trevor.l.davis@gmail.com>
Diff between piecepackr versions 1.13.11 dated 2024-08-16 and 1.14.1 dated 2025-01-12
piecepackr-1.13.11/piecepackr/tests/testthat/_snaps/op_transform/simple-points.svg |only piecepackr-1.13.11/piecepackr/tests/testthat/_snaps/op_transform/simple-square.svg |only piecepackr-1.13.11/piecepackr/tests/testthat/test-affine.R |only piecepackr-1.14.1/piecepackr/DESCRIPTION | 10 piecepackr-1.14.1/piecepackr/MD5 | 109 +- piecepackr-1.14.1/piecepackr/NAMESPACE | 27 piecepackr-1.14.1/piecepackr/NEWS.md | 81 + piecepackr-1.14.1/piecepackr/R/aabb_piece.R | 17 piecepackr-1.14.1/piecepackr/R/cropmarkGrob.R | 227 +++-- piecepackr-1.14.1/piecepackr/R/crosshairGrob.R |only piecepackr-1.14.1/piecepackr/R/game_systems.R | 66 - piecepackr-1.14.1/piecepackr/R/install_ppverse.R |only piecepackr-1.14.1/piecepackr/R/op_transform.R | 18 piecepackr-1.14.1/piecepackr/R/piece-rayrender.R | 17 piecepackr-1.14.1/piecepackr/R/piece3d-rgl.R | 39 piecepackr-1.14.1/piecepackr/R/pieceGrob-grid.R | 38 piecepackr-1.14.1/piecepackr/R/piece_mesh-rayvertex.R | 33 piecepackr-1.14.1/piecepackr/R/pp_cfg.R | 2 piecepackr-1.14.1/piecepackr/R/pp_shape.R | 2 piecepackr-1.14.1/piecepackr/R/save_piece_obj.R | 122 ++ piecepackr-1.14.1/piecepackr/R/sysdata.rda |binary piecepackr-1.14.1/piecepackr/R/utils-composite.R | 97 -- piecepackr-1.14.1/piecepackr/R/utils-d10.R | 78 + piecepackr-1.14.1/piecepackr/R/utils-d12.R | 22 piecepackr-1.14.1/piecepackr/R/utils-d20.R | 27 piecepackr-1.14.1/piecepackr/R/utils-d4.R | 41 piecepackr-1.14.1/piecepackr/R/utils-d6.R | 21 piecepackr-1.14.1/piecepackr/R/utils-d8.R | 31 piecepackr-1.14.1/piecepackr/R/utils-font.R | 41 piecepackr-1.14.1/piecepackr/R/utils-geometry.R | 450 +--------- piecepackr-1.14.1/piecepackr/R/utils-mat-grobs.R | 2 piecepackr-1.14.1/piecepackr/R/utils-misc.R | 3 piecepackr-1.14.1/piecepackr/R/utils-op-grobs.R | 76 - piecepackr-1.14.1/piecepackr/R/utils-pips.R | 29 piecepackr-1.14.1/piecepackr/R/utils-token.R | 142 +-- piecepackr-1.14.1/piecepackr/R/utils-transformation.R | 241 ----- piecepackr-1.14.1/piecepackr/R/utils-xyz.R | 34 piecepackr-1.14.1/piecepackr/R/zzz.R | 5 piecepackr-1.14.1/piecepackr/README.md | 60 + piecepackr-1.14.1/piecepackr/data/spdx_license_list.rda |binary piecepackr-1.14.1/piecepackr/man/geometry_utils.Rd | 4 piecepackr-1.14.1/piecepackr/man/grid.cropmark.Rd | 10 piecepackr-1.14.1/piecepackr/man/grid.crosshair.Rd |only piecepackr-1.14.1/piecepackr/man/install_ppverse.Rd |only piecepackr-1.14.1/piecepackr/man/obj_fns.Rd | 2 piecepackr-1.14.1/piecepackr/man/piecepackr-package.Rd | 2 piecepackr-1.14.1/piecepackr/man/save_piece_obj.Rd | 9 piecepackr-1.14.1/piecepackr/tests/testthat/_snaps/crosshairs |only piecepackr-1.14.1/piecepackr/tests/testthat/_snaps/draw_component/tile-face-op.svg | 2 piecepackr-1.14.1/piecepackr/tests/testthat/_snaps/game_systems/go.svg | 300 +++--- piecepackr-1.14.1/piecepackr/tests/testthat/_snaps/game_systems/joystick-op.svg | 8 piecepackr-1.14.1/piecepackr/tests/testthat/_snaps/op_transform/oblique-pyramids.svg | 28 piecepackr-1.14.1/piecepackr/tests/testthat/_snaps/op_transform/op-transform-225.svg | 12 piecepackr-1.14.1/piecepackr/tests/testthat/_snaps/op_transform/pyramid-tops-larger-on-top.svg | 6 piecepackr-1.14.1/piecepackr/tests/testthat/_snaps/op_transform/pyramid-tops-smaller-on-top.svg | 6 piecepackr-1.14.1/piecepackr/tests/testthat/_snaps/op_transform/rotated-tile-faces.svg | 2 piecepackr-1.14.1/piecepackr/tests/testthat/test-crosshairs.R |only piecepackr-1.14.1/piecepackr/tests/testthat/test-draw_component.R | 12 piecepackr-1.14.1/piecepackr/tests/testthat/test-op_transform.R | 15 piecepackr-1.14.1/piecepackr/tests/testthat/test-ppverse.R |only 60 files changed, 1170 insertions(+), 1456 deletions(-)
Title: Joint Clustering and Alignment of Functional Data
Description: Implementations of the k-means, hierarchical agglomerative and
DBSCAN clustering methods for functional data which allows for jointly
aligning and clustering curves. It supports functional data defined on
one-dimensional domains but possibly evaluating in multivariate codomains.
It supports functional data defined in arrays but also via the 'fd' and
'funData' classes for functional data defined in the 'fda' and 'funData'
packages respectively. It currently supports shift, dilation and affine
warping functions for functional data defined on the real line and uses the
SRSF framework to handle boundary-preserving warping for functional data
defined on a specific interval. Main reference for the k-means algorithm:
Sangalli L.M., Secchi P., Vantini S., Vitelli V. (2010) "k-mean alignment
for curve clustering" <doi:10.1016/j.csda.2009.12.008>. Main reference for
the SRSF framework: Tucker, J. D., Wu, W., & Srivastava, A. (2013)
"Generative models for functional data using phase and [...truncated...]
Author: Aymeric Stamm [aut, cre] ,
Laura Sangalli [ctb],
Piercesare Secchi [ctb],
Simone Vantini [ctb],
Valeria Vitelli [ctb],
Alessandro Zito [ctb]
Maintainer: Aymeric Stamm <aymeric.stamm@cnrs.fr>
Diff between fdacluster versions 0.3.0 dated 2023-07-04 and 0.4.0 dated 2025-01-12
fdacluster-0.3.0/fdacluster/src/kumaraswamyWarpingClass.cpp |only fdacluster-0.3.0/fdacluster/src/kumaraswamyWarpingClass.h |only fdacluster-0.4.0/fdacluster/DESCRIPTION | 16 fdacluster-0.4.0/fdacluster/MD5 | 84 +-- fdacluster-0.4.0/fdacluster/NAMESPACE | 2 fdacluster-0.4.0/fdacluster/NEWS.md | 35 + fdacluster-0.4.0/fdacluster/R/caps-diagnostic.R | 34 - fdacluster-0.4.0/fdacluster/R/caps-plot.R | 57 +- fdacluster-0.4.0/fdacluster/R/compare-caps.R | 160 +++--- fdacluster-0.4.0/fdacluster/R/fdacluster-package.R | 2 fdacluster-0.4.0/fdacluster/R/fdadbscan.R | 61 +- fdacluster-0.4.0/fdacluster/R/fdadist.R | 49 + fdacluster-0.4.0/fdacluster/R/fdahclust.R | 62 +- fdacluster-0.4.0/fdacluster/R/fdakmeans.R | 251 ++++++---- fdacluster-0.4.0/fdacluster/R/sysdata.rda |binary fdacluster-0.4.0/fdacluster/R/utils.R | 144 +++++ fdacluster-0.4.0/fdacluster/README.md | 93 --- fdacluster-0.4.0/fdacluster/build/partial.rdb |binary fdacluster-0.4.0/fdacluster/build/vignette.rds |binary fdacluster-0.4.0/fdacluster/inst/doc/berkeley-growth.R | 167 ++++-- fdacluster-0.4.0/fdacluster/inst/doc/berkeley-growth.Rmd | 102 +++- fdacluster-0.4.0/fdacluster/inst/doc/berkeley-growth.html | 249 +++++---- fdacluster-0.4.0/fdacluster/inst/doc/kmeans-initialisation.R | 156 +++--- fdacluster-0.4.0/fdacluster/inst/doc/kmeans-initialisation.Rmd | 20 fdacluster-0.4.0/fdacluster/inst/doc/kmeans-initialisation.html | 31 - fdacluster-0.4.0/fdacluster/man/compare_caps.Rd | 23 fdacluster-0.4.0/fdacluster/man/fdacluster-package.Rd | 2 fdacluster-0.4.0/fdacluster/man/fdadbscan.Rd | 38 + fdacluster-0.4.0/fdacluster/man/fdadist.Rd | 31 - fdacluster-0.4.0/fdacluster/man/fdahclust.Rd | 48 + fdacluster-0.4.0/fdacluster/man/fdakmeans.Rd | 38 + fdacluster-0.4.0/fdacluster/man/figures/README-kmeans-amplitude-viz-1.png |binary fdacluster-0.4.0/fdacluster/man/figures/README-kmeans-amplitude-viz-2.png |binary fdacluster-0.4.0/fdacluster/man/figures/README-kmeans-phase-viz-1.png |binary fdacluster-0.4.0/fdacluster/man/figures/README-kmeans-phase-viz-2.png |binary fdacluster-0.4.0/fdacluster/src/kmaModelClass.cpp | 7 fdacluster-0.4.0/fdacluster/src/l2DissimilarityClass.cpp | 19 fdacluster-0.4.0/fdacluster/src/normalizedL2DissimilarityClass.cpp |only fdacluster-0.4.0/fdacluster/src/normalizedL2DissimilarityClass.h |only fdacluster-0.4.0/fdacluster/src/pearsonDissimilarityClass.cpp | 4 fdacluster-0.4.0/fdacluster/tests/testthat/test-fdadbscan.R | 2 fdacluster-0.4.0/fdacluster/tests/testthat/test-fdahclust.R | 2 fdacluster-0.4.0/fdacluster/tests/testthat/test-fdakmeans.R | 12 fdacluster-0.4.0/fdacluster/vignettes/berkeley-growth.Rmd | 102 +++- fdacluster-0.4.0/fdacluster/vignettes/kmeans-initialisation.Rmd | 20 45 files changed, 1306 insertions(+), 817 deletions(-)
Title: Radiocarbon Calibration Curves
Description: The IntCal20 radiocarbon calibration curves (Reimer et al. 2020 <doi:10.1017/RDC.2020.68>) are provided as a data package, together with previous IntCal curves (IntCal13, IntCal09, IntCal04, IntCal98), other curves (e.g., NOTCal04 [van der Plicht et al. 2004], Arnold & Libby 1951) and postbomb curves. Also provided are functions to copy the curves into memory, and to read, query and plot the data underlying the IntCal20 curves.
Author: Maarten Blaauw [aut, cre]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between rintcal versions 1.1.1 dated 2024-12-19 and 1.1.2 dated 2025-01-12
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 3 +++ R/data.R | 20 +++++++++++++++----- R/rintcal.R | 2 -- inst/doc/rintcal.html | 4 ++-- 6 files changed, 28 insertions(+), 17 deletions(-)
Title: Seamless R and C++ Integration
Description: The 'Rcpp' package provides R functions as well as C++ classes which
offer a seamless integration of R and C++. Many R data types and objects can be
mapped back and forth to C++ equivalents which facilitates both writing of new
code as well as easier integration of third-party libraries. Documentation
about 'Rcpp' is provided by several vignettes included in this package, via the
'Rcpp Gallery' site at <https://gallery.rcpp.org>, the paper by Eddelbuettel and
Francois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013,
<doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2018,
<doi:10.1080/00031305.2017.1375990>); see 'citation("Rcpp")' for details.
Author: Dirk Eddelbuettel [aut, cre] ,
Romain Francois [aut] ,
JJ Allaire [aut] ,
Kevin Ushey [aut] ,
Qiang Kou [aut] ,
Nathan Russell [aut],
Inaki Ucar [aut] ,
Doug Bates [aut] ,
John Chambers [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between Rcpp versions 1.0.13-1 dated 2024-11-02 and 1.0.14 dated 2025-01-12
ChangeLog | 142 +++++++++++++++++++- DESCRIPTION | 8 - MD5 | 106 +++++++------- R/Rcpp.package.skeleton.R | 23 ++- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 45 ++++++ inst/bib/Rcpp.bib | 4 inst/doc/Rcpp-FAQ.pdf |binary inst/doc/Rcpp-attributes.pdf |binary inst/doc/Rcpp-extending.pdf |binary inst/doc/Rcpp-introduction.pdf |binary inst/doc/Rcpp-jss-2011.pdf |binary inst/doc/Rcpp-libraries.pdf |binary inst/doc/Rcpp-modules.pdf |binary inst/doc/Rcpp-package.pdf |binary inst/doc/Rcpp-quickref.pdf |binary inst/doc/Rcpp-sugar.pdf |binary inst/include/Rcpp/Benchmark/Timer.h | 8 - inst/include/Rcpp/DataFrame.h | 2 inst/include/Rcpp/DottedPair.h | 2 inst/include/Rcpp/Environment.h | 15 -- inst/include/Rcpp/Function.h | 2 inst/include/Rcpp/InternalFunctionWithStdFunction.h | 2 inst/include/Rcpp/Language.h | 8 - inst/include/Rcpp/Module.h | 11 - inst/include/Rcpp/Pairlist.h | 8 - inst/include/Rcpp/config.h | 10 - inst/include/Rcpp/exceptions_impl.h | 19 +- inst/include/Rcpp/grow.h | 2 inst/include/Rcpp/internal/call.h | 6 inst/include/Rcpp/module/class.h | 4 inst/include/Rcpp/platform/compiler.h | 6 inst/include/Rcpp/r_cast.h | 11 - inst/include/Rcpp/traits/index_sequence.h | 2 inst/include/Rcpp/traits/named_object.h | 2 inst/include/Rcpp/vector/Vector.h | 6 inst/tinytest/test_date.R | 2 inst/tinytest/test_module.R | 25 +++ inst/tinytest/test_rcpp_package_skeleton.R | 8 - inst/tinytest/test_sugar.R | 2 src/api.cpp | 2 src/attributes.cpp | 2 tests/tinytest.R | 12 - vignettes/pdf/Rcpp-FAQ.pdf |binary vignettes/pdf/Rcpp-attributes.pdf |binary vignettes/pdf/Rcpp-extending.pdf |binary vignettes/pdf/Rcpp-introduction.pdf |binary vignettes/pdf/Rcpp-jss-2011.pdf |binary vignettes/pdf/Rcpp-libraries.pdf |binary vignettes/pdf/Rcpp-modules.pdf |binary vignettes/pdf/Rcpp-package.pdf |binary vignettes/pdf/Rcpp-quickref.pdf |binary vignettes/pdf/Rcpp-sugar.pdf |binary 54 files changed, 349 insertions(+), 158 deletions(-)
Title: Plant Photobiology Related Functions and Data
Description: Provides functions for quantifying visible (VIS) and ultraviolet
(UV) radiation in relation to the photoreceptors Phytochromes,
Cryptochromes, and UVR8 which are present in plants. It also includes data
sets on the optical properties of plants. Part of the 'r4photobiology'
suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyPlants versions 0.5.0 dated 2024-04-02 and 0.6.0 dated 2025-01-12
DESCRIPTION | 13 - MD5 | 72 ++++--- NAMESPACE | 12 + NEWS.md | 8 R/leaf-fluo-mspct.r |only R/water.et.r |only R/water.vapour.R |only README.md | 29 ++ build/partial.rdb |binary build/vignette.rds |binary data/CRYs.mspct.rda |binary data/McCree.rda |binary data/PHOTs.mspct.rda |binary data/UVR8s.mspct.rda |binary data/ZTLs.mspct.rda |binary data/carotenoids-mspct.rda |binary data/chlorophylls-fluorescence-mspct.rda |binary data/chlorophylls-mspct.rda |binary data/leaf-fluorescence-mspct.rda |only data/leaves.spct.rda |binary data/phytochrome.spct.rda |binary inst/doc/r4p-introduction.html | 6 inst/doc/user-guide.R | 74 +++++++ inst/doc/user-guide.Rmd | 117 +++++++++++ inst/doc/user-guide.html | 313 +++++++++++++++++-------------- man/ET_ref.Rd |only man/figures/README-unnamed-chunk-4-1.png |binary man/leaf_fluorescence.mspct.Rd |only man/net_irradiance.Rd |only man/water_vp_sat.Rd |only tests |only vignettes/user-guide.Rmd | 117 +++++++++++ 32 files changed, 575 insertions(+), 186 deletions(-)
More information about photobiologyPlants at CRAN
Permanent link
Title: Less Code, More Results
Description: Each function replaces multiple standard R functions. For example, two function calls, Read() and CountAll(), generate summary statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for summary statistics via pivot tables, a comprehensive regression analysis, ANOVA and t-test, visualizations including the Violin/Box/Scatter plot for a numerical variable, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function call, variable labels, time series with aggregation and forecasting, color themes, and Trellis (facet) graphics. Also includes a confirmatory factor analysis of multiple indicator measurement models, pedagogical routines for data simulation such as for the Central Limit Theorem, generation and rendering of regression instructions for interpretative output, and interactive visualizations.
Author: David W. Gerbing [aut, cre]
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 4.3.9 dated 2024-12-08 and 4.4.0 dated 2025-01-12
lessR-4.3.9/lessR/R/Sort.R |only lessR-4.4.0/lessR/DESCRIPTION | 10 lessR-4.4.0/lessR/MD5 | 103 +-- lessR-4.4.0/lessR/NAMESPACE | 13 lessR-4.4.0/lessR/NEWS.md | 39 + lessR-4.4.0/lessR/R/ANOVA.R | 38 - lessR-4.4.0/lessR/R/BarChart.R | 2 lessR-4.4.0/lessR/R/Logit.R | 80 +- lessR-4.4.0/lessR/R/PieChart.R | 50 - lessR-4.4.0/lessR/R/Plot.R | 231 +++++--- lessR-4.4.0/lessR/R/Read.R | 18 lessR-4.4.0/lessR/R/Regression.R | 108 +-- lessR-4.4.0/lessR/R/STL.R | 89 ++- lessR-4.4.0/lessR/R/bar.lattice.R | 56 +- lessR-4.4.0/lessR/R/bc.ParamValid.R | 4 lessR-4.4.0/lessR/R/bc.main.R | 14 lessR-4.4.0/lessR/R/hst.stats.R | 13 lessR-4.4.0/lessR/R/order_by.R |only lessR-4.4.0/lessR/R/param.VBS.R | 50 - lessR-4.4.0/lessR/R/pc.main.R | 48 - lessR-4.4.0/lessR/R/pivot.R | 2 lessR-4.4.0/lessR/R/plt.colors.R | 12 lessR-4.4.0/lessR/R/plt.fill.R | 2 lessR-4.4.0/lessR/R/plt.forecast.R | 373 +++++++++---- lessR-4.4.0/lessR/R/plt.funnel.R | 4 lessR-4.4.0/lessR/R/plt.lattice.R | 96 +-- lessR-4.4.0/lessR/R/plt.legend.R | 7 lessR-4.4.0/lessR/R/plt.main.R | 125 ++-- lessR-4.4.0/lessR/R/plt.marg.R | 2 lessR-4.4.0/lessR/R/plt.panel.R | 72 +- lessR-4.4.0/lessR/R/plt.shapes.R | 2 lessR-4.4.0/lessR/R/plt.time.R | 101 ++- lessR-4.4.0/lessR/R/plt.txt.R | 557 +++++++++++++------ lessR-4.4.0/lessR/R/print.outall.R | 2 lessR-4.4.0/lessR/R/reg.1fitBasic.R | 12 lessR-4.4.0/lessR/R/rename.R | 4 lessR-4.4.0/lessR/R/sort_by.R | 107 --- lessR-4.4.0/lessR/R/ss.numeric.R | 16 lessR-4.4.0/lessR/R/style.R | 116 ++-- lessR-4.4.0/lessR/R/tsExtract.R | 64 +- lessR-4.4.0/lessR/R/tsMake.R | 32 - lessR-4.4.0/lessR/R/ttest.R | 82 +- lessR-4.4.0/lessR/R/zzz.R | 54 + lessR-4.4.0/lessR/build/vignette.rds |binary lessR-4.4.0/lessR/inst/doc/intro.R | 62 ++ lessR-4.4.0/lessR/inst/doc/intro.Rmd | 173 ++++++ lessR-4.4.0/lessR/inst/doc/intro.html | 948 ++++++++++++++++++++++++++++------ lessR-4.4.0/lessR/man/BarChart.Rd | 3 lessR-4.4.0/lessR/man/Histogram.Rd | 4 lessR-4.4.0/lessR/man/Plot.Rd | 299 +++++----- lessR-4.4.0/lessR/man/STL.Rd | 37 + lessR-4.4.0/lessR/man/order_by.Rd |only lessR-4.4.0/lessR/man/sort_by.Rd | 68 -- lessR-4.4.0/lessR/vignettes/intro.Rmd | 173 ++++++ 54 files changed, 3048 insertions(+), 1529 deletions(-)
Title: Extra Functionality for 'leaflet' Package
Description: Several 'leaflet' plugins are integrated, which are available as extension to the 'leaflet' package.
Author: Gatscha Sebastian [aut, cre],
Ricardo Rodrigo Basa [ctb],
Jeffrey O Hanson [ctb]
Maintainer: Gatscha Sebastian <sebastian_gatscha@gmx.at>
Diff between leaflet.extras2 versions 1.2.2 dated 2023-08-21 and 1.3.0 dated 2025-01-12
leaflet.extras2-1.2.2/leaflet.extras2/man/leaflet.extras2.Rd |only leaflet.extras2-1.3.0/leaflet.extras2/DESCRIPTION | 14 leaflet.extras2-1.3.0/leaflet.extras2/MD5 | 230 ++-- leaflet.extras2-1.3.0/leaflet.extras2/NAMESPACE | 12 leaflet.extras2-1.3.0/leaflet.extras2/NEWS.md | 12 leaflet.extras2-1.3.0/leaflet.extras2/R/antpath.R | 63 - leaflet.extras2-1.3.0/leaflet.extras2/R/arrowhead.R | 74 - leaflet.extras2-1.3.0/leaflet.extras2/R/buildings.R |only leaflet.extras2-1.3.0/leaflet.extras2/R/clusterCharts.R |only leaflet.extras2-1.3.0/leaflet.extras2/R/contextmenu.R | 80 - leaflet.extras2-1.3.0/leaflet.extras2/R/divicon.R |only leaflet.extras2-1.3.0/leaflet.extras2/R/easyprint.R | 86 - leaflet.extras2-1.3.0/leaflet.extras2/R/gibs.R | 59 - leaflet.extras2-1.3.0/leaflet.extras2/R/heightgraph.R | 99 +- leaflet.extras2-1.3.0/leaflet.extras2/R/hexbin.R | 81 - leaflet.extras2-1.3.0/leaflet.extras2/R/history.R | 41 leaflet.extras2-1.3.0/leaflet.extras2/R/labelgun.R | 26 leaflet.extras2-1.3.0/leaflet.extras2/R/layergroupcollision.R |only leaflet.extras2-1.3.0/leaflet.extras2/R/layergroupconditional.R |only leaflet.extras2-1.3.0/leaflet.extras2/R/leaflet.extras2-package.R | 14 leaflet.extras2-1.3.0/leaflet.extras2/R/leafletsync.R | 34 leaflet.extras2-1.3.0/leaflet.extras2/R/mapkeyIcon.R | 172 +-- leaflet.extras2-1.3.0/leaflet.extras2/R/movingmarker.R | 97 + leaflet.extras2-1.3.0/leaflet.extras2/R/openweather.R | 99 +- leaflet.extras2-1.3.0/leaflet.extras2/R/playback.R | 177 ++- leaflet.extras2-1.3.0/leaflet.extras2/R/reachability.R | 28 leaflet.extras2-1.3.0/leaflet.extras2/R/sidebar.R | 67 - leaflet.extras2-1.3.0/leaflet.extras2/R/sidebyside.R | 59 - leaflet.extras2-1.3.0/leaflet.extras2/R/spin.R | 17 leaflet.extras2-1.3.0/leaflet.extras2/R/tangram.R | 37 leaflet.extras2-1.3.0/leaflet.extras2/R/timeslider.R | 116 +- leaflet.extras2-1.3.0/leaflet.extras2/R/velocity.R | 30 leaflet.extras2-1.3.0/leaflet.extras2/R/wms.R | 38 leaflet.extras2-1.3.0/leaflet.extras2/inst/examples/Buildings_mini.geojson |only leaflet.extras2-1.3.0/leaflet.extras2/inst/examples/antpath_app.R | 15 leaflet.extras2-1.3.0/leaflet.extras2/inst/examples/arrowhead_app.R | 45 leaflet.extras2-1.3.0/leaflet.extras2/inst/examples/buildings_app.R |only leaflet.extras2-1.3.0/leaflet.extras2/inst/examples/clusterCharts_app.R |only leaflet.extras2-1.3.0/leaflet.extras2/inst/examples/clustercharts_sum.R |only leaflet.extras2-1.3.0/leaflet.extras2/inst/examples/conditional_app.R |only leaflet.extras2-1.3.0/leaflet.extras2/inst/examples/contextmenu_app.R | 73 - leaflet.extras2-1.3.0/leaflet.extras2/inst/examples/divicons_app.R |only leaflet.extras2-1.3.0/leaflet.extras2/inst/examples/divicons_html_app.R |only leaflet.extras2-1.3.0/leaflet.extras2/inst/examples/layergroupcollision_app.R |only leaflet.extras2-1.3.0/leaflet.extras2/inst/examples/leafletsync/sync_basic.R | 2 leaflet.extras2-1.3.0/leaflet.extras2/inst/examples/sidebar_app.R | 7 leaflet.extras2-1.3.0/leaflet.extras2/inst/examples/timeslider_app.R | 1 leaflet.extras2-1.3.0/leaflet.extras2/inst/examples/www |only leaflet.extras2-1.3.0/leaflet.extras2/inst/htmlwidgets/lfx-antpath/lfx-ant-path.js | 2 leaflet.extras2-1.3.0/leaflet.extras2/inst/htmlwidgets/lfx-building |only leaflet.extras2-1.3.0/leaflet.extras2/inst/htmlwidgets/lfx-clustercharts |only leaflet.extras2-1.3.0/leaflet.extras2/inst/htmlwidgets/lfx-conditional |only leaflet.extras2-1.3.0/leaflet.extras2/inst/htmlwidgets/lfx-divicon |only leaflet.extras2-1.3.0/leaflet.extras2/inst/htmlwidgets/lfx-layergroupcollision |only leaflet.extras2-1.3.0/leaflet.extras2/inst/htmlwidgets/lfx-sidebar/leaflet-sidebar-binding.js | 32 leaflet.extras2-1.3.0/leaflet.extras2/inst/htmlwidgets/lfx-sidebar/leaflet-sidebar.css | 4 leaflet.extras2-1.3.0/leaflet.extras2/man/LayerGroupCollision.Rd |only leaflet.extras2-1.3.0/leaflet.extras2/man/addBuildings.Rd |only leaflet.extras2-1.3.0/leaflet.extras2/man/addClusterCharts.Rd |only leaflet.extras2-1.3.0/leaflet.extras2/man/addContextmenu.Rd | 44 leaflet.extras2-1.3.0/leaflet.extras2/man/addDivicon.Rd |only leaflet.extras2-1.3.0/leaflet.extras2/man/addEasyprint.Rd | 9 leaflet.extras2-1.3.0/leaflet.extras2/man/addGIBS.Rd | 10 leaflet.extras2-1.3.0/leaflet.extras2/man/addHeightgraph.Rd | 19 leaflet.extras2-1.3.0/leaflet.extras2/man/addHexbin.Rd | 20 leaflet.extras2-1.3.0/leaflet.extras2/man/addHistory.Rd | 2 leaflet.extras2-1.3.0/leaflet.extras2/man/addLabelgun.Rd | 14 leaflet.extras2-1.3.0/leaflet.extras2/man/addLayerGroupConditional.Rd |only leaflet.extras2-1.3.0/leaflet.extras2/man/addMapkeyMarkers.Rd | 20 leaflet.extras2-1.3.0/leaflet.extras2/man/addMovingMarker.Rd | 26 leaflet.extras2-1.3.0/leaflet.extras2/man/addOpenweatherCurrent.Rd | 13 leaflet.extras2-1.3.0/leaflet.extras2/man/addOpenweatherTiles.Rd | 10 leaflet.extras2-1.3.0/leaflet.extras2/man/addPlayback.Rd | 83 - leaflet.extras2-1.3.0/leaflet.extras2/man/addReachability.Rd | 2 leaflet.extras2-1.3.0/leaflet.extras2/man/addSidebar.Rd | 12 leaflet.extras2-1.3.0/leaflet.extras2/man/addSidebyside.Rd | 36 leaflet.extras2-1.3.0/leaflet.extras2/man/addSpinner.Rd | 2 leaflet.extras2-1.3.0/leaflet.extras2/man/addTangram.Rd | 17 leaflet.extras2-1.3.0/leaflet.extras2/man/addTimeslider.Rd | 23 leaflet.extras2-1.3.0/leaflet.extras2/man/addVelocity.Rd | 4 leaflet.extras2-1.3.0/leaflet.extras2/man/addWMS.Rd | 22 leaflet.extras2-1.3.0/leaflet.extras2/man/antpathOptions.Rd | 5 leaflet.extras2-1.3.0/leaflet.extras2/man/clearConditionalLayers.Rd |only leaflet.extras2-1.3.0/leaflet.extras2/man/clusterchartOptions.Rd |only leaflet.extras2-1.3.0/leaflet.extras2/man/disableContextmenu.Rd | 72 - leaflet.extras2-1.3.0/leaflet.extras2/man/easyprintMap.Rd | 48 leaflet.extras2-1.3.0/leaflet.extras2/man/enableContextmenu.Rd | 72 - leaflet.extras2-1.3.0/leaflet.extras2/man/historyOptions.Rd | 9 leaflet.extras2-1.3.0/leaflet.extras2/man/isSynced.Rd | 2 leaflet.extras2-1.3.0/leaflet.extras2/man/leaflet.extras2-package.Rd |only leaflet.extras2-1.3.0/leaflet.extras2/man/leafletsyncOptions.Rd | 2 leaflet.extras2-1.3.0/leaflet.extras2/man/makeMapkeyIcon.Rd | 12 leaflet.extras2-1.3.0/leaflet.extras2/man/mapkeyIconList.Rd | 2 leaflet.extras2-1.3.0/leaflet.extras2/man/mapkeyIcons.Rd | 15 leaflet.extras2-1.3.0/leaflet.extras2/man/playbackOptions.Rd | 2 leaflet.extras2-1.3.0/leaflet.extras2/man/removeConditionalLayer.Rd |only leaflet.extras2-1.3.0/leaflet.extras2/man/setBuildingData.Rd |only leaflet.extras2-1.3.0/leaflet.extras2/man/setBuildingStyle.Rd |only leaflet.extras2-1.3.0/leaflet.extras2/man/sidebar_tabs.Rd | 12 leaflet.extras2-1.3.0/leaflet.extras2/man/startMoving.Rd | 14 leaflet.extras2-1.3.0/leaflet.extras2/man/unsync.Rd | 2 leaflet.extras2-1.3.0/leaflet.extras2/man/updateBuildingTime.Rd |only leaflet.extras2-1.3.0/leaflet.extras2/man/velocityOptions.Rd | 3 leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-antpath.R | 14 leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-arrowhead.R | 10 leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-clustercharts.R |only leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-contextmenu.R | 198 ++-- leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-divicon.R |only leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-easyprint.R | 32 leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-gibs.R | 62 - leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-heightgraph.R | 80 - leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-hexbin.R | 84 + leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-history.R | 27 leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-labelgun.R | 10 leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-layergroupcollision.R |only leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-leafletsync.R | 39 leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-mapkeyicon.R | 235 ++-- leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-movingmarker.R | 166 +-- leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-openweathermap.R | 93 + leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-osmbuildings.R |only leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-playback.R | 492 +++++----- leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-reachability.R | 22 leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-sidebar.R | 74 - leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-sidebyside.R | 55 - leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-spin.R | 5 leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-tangram.R | 22 leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-timeslider.R | 86 + leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-velocity.R | 54 - leaflet.extras2-1.3.0/leaflet.extras2/tests/testthat/test-wms.R | 22 129 files changed, 2676 insertions(+), 1909 deletions(-)
More information about leaflet.extras2 at CRAN
Permanent link
Title: Concise, Lazy and Reliable Wrapper for 'chromote' and 'selenium'
Description: A user-friendly wrapper for web automation, using either
'chromote' or 'selenium'. Provides a simple and consistent API to make
web scraping and testing scripts easy to write and understand.
Elements are lazy, and automatically wait for the website to be valid,
resulting in reliable and reproducible code, with no visible impact on
the experience of the programmer.
Author: Ashby Thorpe [aut, cre, cph]
Maintainer: Ashby Thorpe <ashbythorpe@gmail.com>
Diff between selenider versions 0.4.0 dated 2024-04-20 and 0.4.1 dated 2025-01-12
selenider-0.4.0/selenider/R/find_browser_and_version.R |only selenider-0.4.0/selenider/inst/scripts |only selenider-0.4.0/selenider/tests/testthat/test-find_browser_and_version.R |only selenider-0.4.1/selenider/DESCRIPTION | 12 - selenider-0.4.1/selenider/MD5 | 86 +++---- selenider-0.4.1/selenider/NAMESPACE | 2 selenider-0.4.1/selenider/NEWS.md | 9 selenider-0.4.1/selenider/R/aaa_env.R | 5 selenider-0.4.1/selenider/R/actions.R | 3 selenider-0.4.1/selenider/R/api.R | 7 selenider-0.4.1/selenider/R/cache.R | 4 selenider-0.4.1/selenider/R/elem_filter.R | 2 selenider-0.4.1/selenider/R/find_browser.R |only selenider-0.4.1/selenider/R/find_elements.R | 9 selenider-0.4.1/selenider/R/get_actual_element.R | 2 selenider-0.4.1/selenider/R/global_actions.R | 108 ++++++++- selenider-0.4.1/selenider/R/session-options.R | 117 +++++----- selenider-0.4.1/selenider/R/session.R | 101 +++----- selenider-0.4.1/selenider/R/utils.R | 28 +- selenider-0.4.1/selenider/README.md | 2 selenider-0.4.1/selenider/build/vignette.rds |binary selenider-0.4.1/selenider/inst/doc/advanced-usage.R |only selenider-0.4.1/selenider/inst/doc/advanced-usage.Rmd |only selenider-0.4.1/selenider/inst/doc/advanced-usage.html |only selenider-0.4.1/selenider/inst/doc/selenider.R | 14 - selenider-0.4.1/selenider/inst/doc/selenider.Rmd | 14 - selenider-0.4.1/selenider/inst/doc/selenider.html | 9 selenider-0.4.1/selenider/inst/doc/unit-testing.html | 30 +- selenider-0.4.1/selenider/inst/doc/with-rvest.html | 8 selenider-0.4.1/selenider/man/back.Rd | 9 selenider-0.4.1/selenider/man/chromote_options.Rd | 48 ---- selenider-0.4.1/selenider/man/current_url.Rd | 1 selenider-0.4.1/selenider/man/elem_cache.Rd | 4 selenider-0.4.1/selenider/man/elem_filter.Rd | 2 selenider-0.4.1/selenider/man/execute_js_fn.Rd | 1 selenider-0.4.1/selenider/man/find_elements.Rd | 9 selenider-0.4.1/selenider/man/get_page_source.Rd | 1 selenider-0.4.1/selenider/man/open_url.Rd | 7 selenider-0.4.1/selenider/man/reload.Rd | 9 selenider-0.4.1/selenider/man/s.Rd | 7 selenider-0.4.1/selenider/man/scroll_to.Rd |only selenider-0.4.1/selenider/man/selenider_available.Rd | 9 selenider-0.4.1/selenider/man/selenider_session.Rd | 28 +- selenider-0.4.1/selenider/man/take_screenshot.Rd | 3 selenider-0.4.1/selenider/man/wdman_server_options.Rd |only selenider-0.4.1/selenider/tests/testthat/test-find_browser.R |only selenider-0.4.1/selenider/tests/testthat/test-global_actions.R | 49 ++++ selenider-0.4.1/selenider/vignettes/advanced-usage.Rmd |only selenider-0.4.1/selenider/vignettes/selenider.Rmd | 14 - 49 files changed, 481 insertions(+), 292 deletions(-)
Title: Produce Forest Plots to Visualize Covariate Effects
Description: Produce forest plots to visualize covariate effects using either
the command line or an interactive 'Shiny' application.
Author: Samer Mouksassi [aut, cre] ,
Benjamin Rich [aut],
Dean Attali [ctb]
Maintainer: Samer Mouksassi <samermouksassi@gmail.com>
Diff between coveffectsplot versions 1.0.5 dated 2024-01-18 and 1.0.6 dated 2025-01-12
DESCRIPTION | 8 MD5 | 45 - NAMESPACE | 2 NEWS.md | 4 R/deltamethod.R |only R/forest_plot.R | 10 build/vignette.rds |binary inst/doc/Exposure_Response_Example.R | 35 inst/doc/Exposure_Response_Example.Rmd | 36 inst/doc/Exposure_Response_Example.html | 1015 +++++++++++++-------------- inst/doc/PKPD_Example.html | 18 inst/doc/PK_Example.R | 11 inst/doc/PK_Example.Rmd | 11 inst/doc/PK_Example.html | 119 +-- inst/doc/PK_Example_full.html | 124 +-- inst/doc/Pediatric_Cov_Sim.html | 18 inst/doc/app.html | 2 inst/doc/introduction_to_coveffectsplot.R | 119 +-- inst/doc/introduction_to_coveffectsplot.Rmd | 1 inst/doc/introduction_to_coveffectsplot.html | 71 - man/deltamethod.Rd |only vignettes/Exposure_Response_Example.Rmd | 36 vignettes/Figure_8_4.png |only vignettes/PK_Example.Rmd | 11 vignettes/introduction_to_coveffectsplot.Rmd | 1 25 files changed, 858 insertions(+), 839 deletions(-)
More information about coveffectsplot at CRAN
Permanent link
Title: Utilities for Start-Up Messages
Description: Provides utilities to create or suppress start-up messages.
Author: Peter Ruckdeschel [cre, cph, aut]
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between startupmsg versions 0.9.7 dated 2024-08-29 and 1.0.0 dated 2025-01-12
DESCRIPTION | 17 ++++---- MD5 | 16 ++++---- NAMESPACE | 1 R/00.r | 1 R/illustration.R | 57 +++++++++++++++++++++++----- R/startUpMessage.R | 14 +++---- inst/NEWS | 27 +++++++++++++ man/StartupUtilities.Rd | 9 +++- man/myStartupUtilities.Rd | 92 +++++++++++++++++++++++++++++++++------------- 9 files changed, 170 insertions(+), 64 deletions(-)
Title: R Interface to 'FishBase'
Description: A programmatic interface to 'FishBase', re-written
based on an accompanying 'RESTful' API. Access tables describing over 30,000
species of fish, their biology, ecology, morphology, and more. This package also
supports experimental access to 'SeaLifeBase' data, which contains
nearly 200,000 species records for all types of aquatic life not covered by
'FishBase.'
Author: Carl Boettiger [cre, aut] ,
Scott Chamberlain [aut] ,
Duncan Temple Lang [aut],
Peter Wainwright [aut],
Kevin Cazelles [ctb] ,
Guohuan Su [ctb]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between rfishbase versions 5.0.0 dated 2024-09-02 and 5.0.1 dated 2025-01-12
DESCRIPTION | 17 ++++++++++------- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/fb_tbl.R | 26 ++++++++++++++++++++++++++ README.md | 2 +- inst/WORDLIST | 8 ++++++-- 6 files changed, 53 insertions(+), 15 deletions(-)
Title: Nonparametric Preprocessing for Parametric Causal Inference
Description: Selects matched samples of the original treated and
control groups with similar covariate distributions -- can be
used to match exactly on covariates, to match on propensity
scores, or perform a variety of other matching procedures. The
package also implements a series of recommendations offered in
Ho, Imai, King, and Stuart (2007) <DOI:10.1093/pan/mpl013>. (The
'gurobi' package, which is not on CRAN, is optional and comes with
an installation of the Gurobi Optimizer, available at
<https://www.gurobi.com>.)
Author: Daniel Ho [aut] ,
Kosuke Imai [aut] ,
Gary King [aut] ,
Elizabeth Stuart [aut] ,
Alex Whitworth [ctb],
Noah Greifer [cre, aut]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between MatchIt versions 4.6.0 dated 2024-11-13 and 4.7.0 dated 2025-01-12
MatchIt-4.6.0/MatchIt/R/match.data.R |only MatchIt-4.6.0/MatchIt/man/match.data.Rd |only MatchIt-4.7.0/MatchIt/DESCRIPTION | 12 MatchIt-4.7.0/MatchIt/MD5 | 143 +-- MatchIt-4.7.0/MatchIt/NAMESPACE | 1 MatchIt-4.7.0/MatchIt/NEWS.md | 14 MatchIt-4.7.0/MatchIt/R/RcppExports.R | 4 MatchIt-4.7.0/MatchIt/R/add_s.weights.R | 7 MatchIt-4.7.0/MatchIt/R/aux_functions.R | 47 - MatchIt-4.7.0/MatchIt/R/dist_functions.R | 35 MatchIt-4.7.0/MatchIt/R/distance2_methods.R | 101 +- MatchIt-4.7.0/MatchIt/R/get_weights_from_mm.R | 6 MatchIt-4.7.0/MatchIt/R/get_weights_from_subclass.R | 32 MatchIt-4.7.0/MatchIt/R/input_processing.R | 61 + MatchIt-4.7.0/MatchIt/R/match.qoi.R | 28 MatchIt-4.7.0/MatchIt/R/match_data.R |only MatchIt-4.7.0/MatchIt/R/matchit.R | 65 - MatchIt-4.7.0/MatchIt/R/matchit2cardinality.R | 138 +-- MatchIt-4.7.0/MatchIt/R/matchit2cem.R | 31 MatchIt-4.7.0/MatchIt/R/matchit2exact.R | 4 MatchIt-4.7.0/MatchIt/R/matchit2full.R | 34 MatchIt-4.7.0/MatchIt/R/matchit2genetic.R | 180 ++-- MatchIt-4.7.0/MatchIt/R/matchit2nearest.R | 70 + MatchIt-4.7.0/MatchIt/R/matchit2optimal.R | 78 +- MatchIt-4.7.0/MatchIt/R/matchit2quick.R | 16 MatchIt-4.7.0/MatchIt/R/matchit2subclass.R | 17 MatchIt-4.7.0/MatchIt/R/plot.matchit.R | 56 - MatchIt-4.7.0/MatchIt/R/plot.summary.matchit.R | 27 MatchIt-4.7.0/MatchIt/R/rbind.matchdata.R | 27 MatchIt-4.7.0/MatchIt/R/summary.matchit.R | 139 ++- MatchIt-4.7.0/MatchIt/R/utils.R | 78 +- MatchIt-4.7.0/MatchIt/build/stage23.rdb |binary MatchIt-4.7.0/MatchIt/build/vignette.rds |binary MatchIt-4.7.0/MatchIt/inst/doc/MatchIt.Rmd | 53 - MatchIt-4.7.0/MatchIt/inst/doc/MatchIt.html | 75 +- MatchIt-4.7.0/MatchIt/inst/doc/assessing-balance.Rmd | 3 MatchIt-4.7.0/MatchIt/inst/doc/assessing-balance.html | 32 MatchIt-4.7.0/MatchIt/inst/doc/estimating-effects.Rmd | 105 +- MatchIt-4.7.0/MatchIt/inst/doc/estimating-effects.html | 631 ++++++++--------- MatchIt-4.7.0/MatchIt/inst/doc/matching-methods.Rmd | 6 MatchIt-4.7.0/MatchIt/inst/doc/matching-methods.html | 29 MatchIt-4.7.0/MatchIt/inst/doc/sampling-weights.Rmd | 9 MatchIt-4.7.0/MatchIt/inst/doc/sampling-weights.html | 21 MatchIt-4.7.0/MatchIt/man/add_s.weights.Rd | 7 MatchIt-4.7.0/MatchIt/man/distance.Rd | 46 - MatchIt-4.7.0/MatchIt/man/match_data.Rd |only MatchIt-4.7.0/MatchIt/man/matchit.Rd | 51 - MatchIt-4.7.0/MatchIt/man/method_cardinality.Rd | 61 - MatchIt-4.7.0/MatchIt/man/method_cem.Rd | 26 MatchIt-4.7.0/MatchIt/man/method_exact.Rd | 4 MatchIt-4.7.0/MatchIt/man/method_full.Rd | 23 MatchIt-4.7.0/MatchIt/man/method_genetic.Rd | 17 MatchIt-4.7.0/MatchIt/man/method_nearest.Rd | 39 - MatchIt-4.7.0/MatchIt/man/method_optimal.Rd | 26 MatchIt-4.7.0/MatchIt/man/method_quick.Rd | 11 MatchIt-4.7.0/MatchIt/man/method_subclass.Rd | 15 MatchIt-4.7.0/MatchIt/man/plot.matchit.Rd | 15 MatchIt-4.7.0/MatchIt/man/plot.summary.matchit.Rd | 9 MatchIt-4.7.0/MatchIt/man/rbind.matchdata.Rd | 12 MatchIt-4.7.0/MatchIt/man/summary.matchit.Rd | 12 MatchIt-4.7.0/MatchIt/src/RcppExports.cpp | 13 MatchIt-4.7.0/MatchIt/src/all_equal_to.cpp | 2 MatchIt-4.7.0/MatchIt/src/internal.cpp | 94 +- MatchIt-4.7.0/MatchIt/src/nn_matchC_distmat.cpp | 22 MatchIt-4.7.0/MatchIt/src/nn_matchC_mahcovs.cpp | 22 MatchIt-4.7.0/MatchIt/src/nn_matchC_vec.cpp | 22 MatchIt-4.7.0/MatchIt/src/pairdistC.cpp | 21 MatchIt-4.7.0/MatchIt/src/preprocess_matchC.cpp |only MatchIt-4.7.0/MatchIt/src/subclass2mm.cpp | 22 MatchIt-4.7.0/MatchIt/vignettes/MatchIt.Rmd | 53 - MatchIt-4.7.0/MatchIt/vignettes/assessing-balance.Rmd | 3 MatchIt-4.7.0/MatchIt/vignettes/estimating-effects.Rmd | 105 +- MatchIt-4.7.0/MatchIt/vignettes/matching-methods.Rmd | 6 MatchIt-4.7.0/MatchIt/vignettes/references.bib | 2 MatchIt-4.7.0/MatchIt/vignettes/sampling-weights.Rmd | 9 75 files changed, 1841 insertions(+), 1344 deletions(-)
Title: Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata',
'Systat', 'Weka', 'dBase', ...
Description: Reading and writing data stored by some versions of
'Epi Info', 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka',
and for reading and writing some 'dBase' files.
Author: R Core Team [aut, cph, cre] ,
Roger Bivand [ctb, cph],
Vincent J. Carey [ctb, cph],
Saikat DebRoy [ctb, cph],
Stephen Eglen [ctb, cph],
Rajarshi Guha [ctb, cph],
Swetlana Herbrandt [ctb],
Nicholas Lewin-Koh [ctb, cph],
Mark Myatt [ctb, cph],
Michael [...truncated...]
Maintainer: R Core Team <R-core@R-project.org>
Diff between foreign versions 0.8-87 dated 2024-06-26 and 0.8-88 dated 2025-01-12
ChangeLog | 3 +++ DESCRIPTION | 15 ++++++++------- MD5 | 10 +++++----- R/octave.R | 4 ++-- R/writeForeignCode.R | 3 ++- tests/keep/codefile.sps | 2 +- 6 files changed, 21 insertions(+), 16 deletions(-)
Title: Statistical Toolbox for Sedimentary Provenance Analysis
Description: Bundles a number of established statistical methods to facilitate the visual interpretation of large datasets in sedimentary geology. Includes functionality for adaptive kernel density estimation, principal component analysis, correspondence analysis, multidimensional scaling, generalised procrustes analysis and individual differences scaling using a variety of dissimilarity measures. Univariate provenance proxies, such as single-grain ages or (isotopic) compositions are compared with the Kolmogorov-Smirnov, Kuiper, Wasserstein-2 or Sircombe-Hazelton L2 distances. Categorical provenance proxies such as chemical compositions are compared with the Aitchison and Bray-Curtis distances,and count data with the chi-square distance. Varietal data can either be converted to one or more distributional datasets, or directly compared using the multivariate Wasserstein distance. Also included are tools to plot compositional and count data on ternary diagrams and point-counting data on radial plots, [...truncated...]
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between provenance versions 4.3 dated 2024-05-04 and 4.4 dated 2025-01-12
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/gui.R | 9 ++++++--- R/io.R | 12 ++++++------ README.md | 2 +- man/read.distributional.Rd | 12 ++++++------ 6 files changed, 29 insertions(+), 26 deletions(-)
Title: Latent Variable Models
Description: A general implementation of Structural Equation Models
with latent variables (MLE, 2SLS, and composite likelihood
estimators) with both continuous, censored, and ordinal
outcomes (Holst and Budtz-Joergensen (2013) <doi:10.1007/s00180-012-0344-y>).
Mixture latent variable models and non-linear latent variable models
(Holst and Budtz-Joergensen (2020) <doi:10.1093/biostatistics/kxy082>).
The package also provides methods for graph exploration (d-separation,
back-door criterion), simulation of general non-linear latent variable
models, and estimation of influence functions for a broad range of
statistical models.
Author: Klaus K. Holst [aut, cre],
Brice Ozenne [ctb],
Thomas Gerds [ctb]
Maintainer: Klaus K. Holst <klaus@holst.it>
Diff between lava versions 1.8.0 dated 2024-03-05 and 1.8.1 dated 2025-01-12
DESCRIPTION | 10 - MD5 | 58 +++++----- NAMESPACE | 9 + NEWS.md | 8 + R/IC.R | 85 +++++++++------ R/diagtest.R | 20 ++- R/estimate.default.R | 223 +++++++++++++++++++++++----------------- R/ksmooth.R | 5 R/lava-package.R | 5 R/matrices.R | 19 ++- R/parsedesign.R | 35 +++--- R/sim.default.R | 207 +++++++++++++++++++++---------------- R/utils.R | 10 + build/partial.rdb |only build/vignette.rds |binary inst/doc/correlation.html | 95 ++++++++--------- inst/doc/influencefunction.R | 44 +++---- inst/doc/influencefunction.Rmd | 51 +++++---- inst/doc/influencefunction.html | 209 +++++++++++++++++-------------------- inst/doc/nonlinear.R | 42 +++---- inst/doc/nonlinear.html | 65 +++++------ man/IC.Rd | 3 man/estimate.array.Rd | 3 man/estimate.default.Rd | 49 +++++--- man/internal.Rd | 1 man/ksmooth2.Rd | 5 man/lava-package.Rd | 22 +++ man/sim.default.Rd | 12 +- tests/testthat/test-influence.R | 31 +++-- tests/testthat/test-simdef.R |only vignettes/influencefunction.Rmd | 51 +++++---- 31 files changed, 780 insertions(+), 597 deletions(-)
Title: Implementation of the Bayesian Discount Prior Approach for
Clinical Trials
Description: Functions for data augmentation using the Bayesian discount prior
method for single arm and two-arm clinical trials, as described in Haddad
et al. (2017) <doi:10.1080/10543406.2017.1300907>. The discount power prior
methodology was developed in collaboration with the The Medical Device
Innovation Consortium (MDIC) Computer Modeling & Simulation Working Group.
Author: Shawn Balcome [aut],
Donnie Musgrove [aut],
Tarek Haddad [aut],
Graeme L. Hickey [cre, aut] ,
Christopher Jackson [ctb]
Maintainer: Graeme L. Hickey <graemeleehickey@gmail.com>
Diff between bayesDP versions 1.3.6 dated 2022-01-30 and 1.3.7 dated 2025-01-12
DESCRIPTION | 8 MD5 | 38 - NAMESPACE | 1 NEWS.md | 12 R/bdpbinomial.R | 143 +++--- R/bdpnormal.R | 191 ++++----- R/bdpsurvival.R | 185 ++++----- README.md | 7 build/vignette.rds |binary inst/doc/bdpbinomial-vignette.R | 6 inst/doc/bdpbinomial-vignette.html | 592 +++++++++++++++++++--------- inst/doc/bdplm-vignette.R | 6 inst/doc/bdplm-vignette.html | 511 ++++++++++++++++-------- inst/doc/bdpnormal-vignette.R | 6 inst/doc/bdpnormal-vignette.html | 595 +++++++++++++++++++---------- inst/doc/bdpsurvival-vignette.R | 8 inst/doc/bdpsurvival-vignette.html | 757 +++++++++++++++++++++++++------------ man/bdpbinomial.Rd | 140 +++--- man/bdpnormal.Rd | 176 ++++---- man/bdpsurvival.Rd | 178 ++++---- 20 files changed, 2247 insertions(+), 1313 deletions(-)
Title: Analysis of Archaeological Mortality Data
Description: A collection of functions for the analysis of archaeological mortality
data (on the topic see e.g. Chamberlain 2006
<https://books.google.de/books?id=nG5FoO_becAC&lpg=PA27&ots=LG0b_xrx6O&dq=life%20table%20archaeology&pg=PA27#v=onepage&q&f=false>).
It takes demographic data in different formats and displays the result in a standard life table
as well as plots the relevant indices (percentage of deaths, survivorship, probability of death,
life expectancy, percentage of population). It also checks for possible biases in the age
structure and applies corrections to life tables.
Author: Nils Mueller-Scheessel [aut, cre, cph],
Martin Hinz [aut],
Clemens Schmid [aut],
Christoph Rinne [aut],
Daniel Knitter [aut],
Wolfgang Hamer [aut],
Dirk Seidensticker [aut],
Franziska Faupel [aut],
Carolin Tietze [aut],
Nicole Grunert [aut]
Maintainer: Nils Mueller-Scheessel <nils.mueller-scheessel@ufg.uni-kiel.de>
Diff between mortAAR versions 1.1.6 dated 2024-03-05 and 1.1.7 dated 2025-01-12
DESCRIPTION | 15 +-- MD5 | 64 +++++++----- NAMESPACE | 4 NEWS.md | 6 + R/halley_band.R |only R/input_functions.R | 2 R/lifetable_indices.R | 29 +++++ R/plot_functions.R | 3 R/population_simulation.R |only R/random_categories.R |only R/representativity.R | 34 +++++- R/reproduction_indices.R | 26 +++-- README.md | 6 - build/partial.rdb |binary inst/REFERENCES.bib | 64 ++++++++++++ inst/doc/mortAAR_vignette-1.html | 10 +- inst/doc/mortAAR_vignette_extended.Rmd | 2 inst/doc/mortAAR_vignette_extended.html | 8 - inst/doc/mortAAR_vignette_lt_correction.R | 3 inst/doc/mortAAR_vignette_lt_correction.Rmd | 14 ++ inst/doc/mortAAR_vignette_lt_correction.html | 63 ++++++++++-- inst/doc/mortAAR_vignette_reproduction.R | 3 inst/doc/mortAAR_vignette_reproduction.Rmd | 12 ++ inst/doc/mortAAR_vignette_reproduction.html | 82 ++++++++++------ man/halley.band.Rd |only man/lt.indices.Rd | 4 man/lt.representativity.Rd | 19 +++ man/lt.reproduction.Rd | 19 ++- man/pop.sim.gomp.Rd |only man/random.cat.apply.Rd |only tests/testthat/_snaps/indices.md | 33 +++++- tests/testthat/_snaps/representativity.md | 133 +-------------------------- tests/testthat/test_representativity.R | 8 - vignettes/mortAAR_vignette_extended.Rmd | 2 vignettes/mortAAR_vignette_lt_correction.Rmd | 14 ++ vignettes/mortAAR_vignette_reproduction.Rmd | 12 ++ 36 files changed, 427 insertions(+), 267 deletions(-)
Title: Modified Poisson and Least-Squares Regressions for Binary
Outcome and Their Generalizations
Description: Modified Poisson and least-squares regression analyses for binary outcomes of Zou (2004) <doi:10.1093/aje/kwh090> and Cheung (2007) <doi:10.1093/aje/kwm223> have been standard multivariate analysis methods to estimate risk ratio and risk difference in clinical and epidemiological studies. This R package involves an easy-to-handle function to implement these analyses by simple commands. Missing data analysis tools (multiple imputation) are also involved. In addition, recent studies have shown the ordinary robust variance estimator possibly has serious bias under small or moderate sample size situations for these methods. This package also provides computational tools to calculate alternative accurate confidence intervals (Noma and Gosho (2024) <Forthcoming>).
Author: Hisashi Noma [aut, cre]
Maintainer: Hisashi Noma <noma@ism.ac.jp>
Diff between rqlm versions 2.1-1 dated 2024-05-23 and 2.3-1 dated 2025-01-12
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++++---- NAMESPACE | 2 ++ NEWS.md | 8 ++++++++ R/mi_glm.r |only data/mch.RData |only man/mch.Rd |only man/mi_glm.Rd |only man/rqlm-package.Rd | 2 +- 9 files changed, 25 insertions(+), 11 deletions(-)