Title: Parametric Statistical Modelling and Inference for the
'spatstat' Family
Description: Functionality for parametric statistical modelling and inference for spatial data,
mainly spatial point patterns, in the 'spatstat' family of packages.
(Excludes analysis of spatial data on a linear network,
which is covered by the separate package 'spatstat.linnet'.)
Supports parametric modelling, formal statistical inference, and model validation.
Parametric models include Poisson point processes, Cox point processes, Neyman-Scott cluster processes, Gibbs point processes and determinantal point processes. Models can be fitted to data using maximum likelihood, maximum pseudolikelihood, maximum composite likelihood and the method of minimum contrast. Fitted models can be simulated and predicted. Formal inference includes hypothesis tests (quadrat counting tests, Cressie-Read tests, Clark-Evans test, Berman test, Diggle-Cressie-Loosmore-Ford test, scan test, studentised permutation test, segregation test, ANOVA tests of fitted models, adjusted composite likelihood ratio test, envelope t [...truncated...]
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb],
Achmad Choiruddin [ctb, cph],
Jean-Francois Coeurjolly [ctb],
Ottmar Cronie [ctb],
Tilman Davies [ctb],
Julian Gilbey [ctb],
Yongtao [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.model versions 3.3-3 dated 2024-11-19 and 3.3-4 dated 2025-01-19
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS | 19 +++++++++++++++++++ R/mpl.R | 14 +++++++++----- inst/doc/packagesizes.txt | 2 ++ inst/info/packagesizes.txt | 2 ++ 6 files changed, 42 insertions(+), 15 deletions(-)
More information about spatstat.model at CRAN
Permanent link
Title: Deconvolute Mixed Genomes with Unknown Proportions
Description: Traditional phasing programs are limited to diploid organisms.
Our method modifies Li and Stephens algorithm with Markov chain Monte Carlo
(MCMC) approaches, and builds a generic framework that allows haplotype searches
in a multiple infection setting. This package is primarily developed as part of
the Pf3k project, which is a global collaboration using the latest
sequencing technologies to provide a high-resolution view of natural variation
in the malaria parasite Plasmodium falciparum. Parasite DNA are extracted from
patient blood sample, which often contains more than one parasite strain, with
unknown proportions. This package is used for deconvoluting mixed haplotypes,
and reporting the mixture proportions from each sample.
Author: Joe Zhu [aut, cre] ,
Jacob Almagro-Garcia [aut],
Gil McVean [aut],
University of Oxford [cph],
Yinghan Liu [ctb],
CodeCogs Zyba Ltd [com, cph],
Deepak Bandyopadhyay [com, cph],
Lutz Kettner [com, cph]
Maintainer: Joe Zhu <sha.joe.zhu@gmail.com>
Diff between DEploid versions 0.5.6 dated 2024-12-23 and 0.5.7 dated 2025-01-19
DEploid-0.5.6/DEploid/src/DEploid/chooseK.cpp |only DEploid-0.5.6/DEploid/src/DEploid/chooseK.hpp |only DEploid-0.5.6/DEploid/src/DEploid/codeCogs |only DEploid-0.5.6/DEploid/src/DEploid/dEploidIO-operation.cpp |only DEploid-0.5.6/DEploid/src/DEploid/dEploidIO-workflow.cpp |only DEploid-0.5.6/DEploid/src/DEploid/dEploidIO.cpp |only DEploid-0.5.6/DEploid/src/DEploid/dEploidIO.hpp |only DEploid-0.5.6/DEploid/src/DEploid/debug |only DEploid-0.5.6/DEploid/src/DEploid/exceptions.hpp |only DEploid-0.5.6/DEploid/src/DEploid/export |only DEploid-0.5.6/DEploid/src/DEploid/global.hpp |only DEploid-0.5.6/DEploid/src/DEploid/ibd.cpp |only DEploid-0.5.6/DEploid/src/DEploid/ibd.hpp |only DEploid-0.5.6/DEploid/src/DEploid/lasso |only DEploid-0.5.6/DEploid/src/DEploid/log-double.hpp |only DEploid-0.5.6/DEploid/src/DEploid/logsum.hpp |only DEploid-0.5.6/DEploid/src/DEploid/mcmc.cpp |only DEploid-0.5.6/DEploid/src/DEploid/mcmc.hpp |only DEploid-0.5.6/DEploid/src/DEploid/panel.cpp |only DEploid-0.5.6/DEploid/src/DEploid/panel.hpp |only DEploid-0.5.6/DEploid/src/DEploid/param.hpp |only DEploid-0.5.6/DEploid/src/DEploid/random |only DEploid-0.5.6/DEploid/src/DEploid/updateHap.cpp |only DEploid-0.5.6/DEploid/src/DEploid/updateHap.hpp |only DEploid-0.5.6/DEploid/src/DEploid/utility.cpp |only DEploid-0.5.6/DEploid/src/DEploid/utility.hpp |only DEploid-0.5.6/DEploid/src/DEploid/vcf |only DEploid-0.5.6/DEploid/tests |only DEploid-0.5.7/DEploid/DESCRIPTION | 11 DEploid-0.5.7/DEploid/MD5 | 251 ++++++++------ DEploid-0.5.7/DEploid/inst/doc/dEploid-Arguments.html | 10 DEploid-0.5.7/DEploid/man/DEploid-package.Rd | 2 DEploid-0.5.7/DEploid/src/DEploid/src |only DEploid-0.5.7/DEploid/src/Makevars | 42 +- DEploid-0.5.7/DEploid/src/Makevars.win | 42 +- DEploid-0.5.7/DEploid/src/dEploidr.cpp | 2 36 files changed, 214 insertions(+), 146 deletions(-)
Title: Quantile Recalibration for Regression Models
Description: Enables the diagnostics and enhancement of regression model calibration.It offers both global and local visualization tools for calibration diagnostics and provides one recalibration method: Torres R, Nott DJ, Sisson SA, Rodrigues T, Reis JG, Rodrigues GS (2024) <doi:10.48550/arXiv.2403.05756>. The method leverages on Probabilistic Integral Transform (PIT) values to both evaluate and perform the calibration of statistical models. For a more detailed description of the package, please refer to the bachelor's thesis available bellow.
Author: Carolina Musso [aut, cre, cph]
,
Ricardo Torres [aut, cph] ,
Joao Reis [aut, cph],
Guilherme Rodrigues [aut, ths, cph]
Maintainer: Carolina Musso <cmusso86@gmail.com>
Diff between recalibratiNN versions 0.3.0 dated 2024-07-05 and 0.3.2 dated 2025-01-19
DESCRIPTION | 6 +-- MD5 | 20 +++++----- NEWS.md | 4 ++ R/gg_CD_local.R | 9 +++- README.md | 36 ++---------------- build/partial.rdb |binary inst/doc/simple_mlp.R | 92 +++++++++++++++++++++++------------------------ inst/doc/simple_mlp.Rmd | 2 - inst/doc/simple_mlp.html | 2 - man/gg_CD_local.Rd | 7 ++- vignettes/simple_mlp.Rmd | 2 - 11 files changed, 82 insertions(+), 98 deletions(-)
Title: R Interface to Google RE2 (C++) Regular Expression Library
Description: Pattern matching, extraction, replacement and other string
processing operations using Google's RE2 <https://github.com/google/re2>
regular-expression engine. Consistent interface (similar to 'stringr').
RE2 uses finite-automata based techniques, and offers a
fast and safe alternative to backtracking regular-expression engines
like those used in 'stringr', 'stringi' and other PCRE implementations.
Author: Girish Palya [aut, cre],
RE2 developers [ctb] ,
Google Inc. [ctb, cph]
Maintainer: Girish Palya <girishji@gmail.com>
Diff between re2 versions 0.1.3 dated 2023-11-28 and 0.1.4 dated 2025-01-19
DESCRIPTION | 28 +++++++++++++++++-------- MD5 | 34 +++++++++++++++--------------- R/RcppExports.R | 15 +++++++++++-- R/re2-package.R | 32 ++++++++++++++-------------- build/vignette.rds |binary inst/doc/re2_intro.R | 2 + inst/doc/re2_intro.Rmd | 2 + inst/doc/re2_intro.html | 7 ++++-- inst/doc/re2_syntax.html | 2 - man/re2-package.Rd | 18 ++++++++-------- man/re2_extract_replace.Rd | 3 ++ man/re2_replace.Rd | 9 ++++++-- src/RcppExports.cpp | 8 +++---- src/re2_re2proxy.cpp | 4 +-- src/re2_re2proxy.h | 2 - src/re2_replace.cpp | 50 +++++++++++++++++++++++++++++++++++++++++---- src/util/README | 2 - vignettes/re2_intro.Rmd | 2 + 18 files changed, 150 insertions(+), 70 deletions(-)
Title: Read/Write, Analyze, and Visualize 'BIOM' Data
Description: A toolkit for working with Biological Observation Matrix ('BIOM') files.
Read/write all 'BIOM' formats. Compute rarefaction, alpha diversity, and
beta diversity (including 'UniFrac'). Summarize counts by taxonomic level.
Subset based on metadata. Generate visualizations and statistical analyses.
CPU intensive operations are coded in C for speed.
Author: Daniel P. Smith [aut, cre] ,
Alkek Center for Metagenomics and Microbiome Research [cph, fnd]
Maintainer: Daniel P. Smith <dansmith01@gmail.com>
Diff between rbiom versions 2.0.7 dated 2025-01-11 and 2.0.10 dated 2025-01-19
rbiom-2.0.10/rbiom/DESCRIPTION | 15 rbiom-2.0.10/rbiom/MD5 | 93 +- rbiom-2.0.10/rbiom/NAMESPACE | 10 rbiom-2.0.10/rbiom/R/adiv_table.r | 77 +- rbiom-2.0.10/rbiom/R/bdiv_table.r | 97 +-- rbiom-2.0.10/rbiom/R/corrplot.r | 42 - rbiom-2.0.10/rbiom/R/distmat_stats.r | 13 rbiom-2.0.10/rbiom/R/documentation.r | 7 rbiom-2.0.10/rbiom/R/rarefy.r | 530 ++++++++--------- rbiom-2.0.10/rbiom/R/rbiom-deprecated.r | 13 rbiom-2.0.10/rbiom/R/read_tree.r | 11 rbiom-2.0.10/rbiom/R/reexport.r | 3 rbiom-2.0.10/rbiom/R/taxa_table.r | 7 rbiom-2.0.10/rbiom/R/validate.r | 15 rbiom-2.0.10/rbiom/R/write_biom.r | 4 rbiom-2.0.10/rbiom/README.md | 20 rbiom-2.0.10/rbiom/man/adiv_matrix.Rd | 18 rbiom-2.0.10/rbiom/man/adiv_table.Rd | 13 rbiom-2.0.10/rbiom/man/bdiv_corrplot.Rd | 3 rbiom-2.0.10/rbiom/man/bdiv_ord_plot.Rd | 3 rbiom-2.0.10/rbiom/man/bdiv_ord_table.Rd | 3 rbiom-2.0.10/rbiom/man/bdiv_table.Rd | 13 rbiom-2.0.10/rbiom/man/distmat_stats.Rd | 3 rbiom-2.0.10/rbiom/man/documentation_default.Rd | 7 rbiom-2.0.10/rbiom/man/figures/README-bdiv-1.png |binary rbiom-2.0.10/rbiom/man/figures/README-bdiv-2.png |binary rbiom-2.0.10/rbiom/man/figures/README-bdiv-3.png |binary rbiom-2.0.10/rbiom/man/figures/README-taxa-1.png |binary rbiom-2.0.10/rbiom/man/figures/README-taxa-2.png |binary rbiom-2.0.10/rbiom/man/rarefy.Rd | 5 rbiom-2.0.10/rbiom/man/rarefy_cols.Rd | 11 rbiom-2.0.10/rbiom/man/read_tree.Rd | 6 rbiom-2.0.10/rbiom/man/reexports.Rd | 3 rbiom-2.0.10/rbiom/man/taxa_corrplot.Rd | 3 rbiom-2.0.10/rbiom/man/taxa_matrix.Rd | 3 rbiom-2.0.10/rbiom/man/write_biom.Rd | 2 rbiom-2.0.10/rbiom/src/alpha_div.c |only rbiom-2.0.10/rbiom/src/beta_div.c |only rbiom-2.0.10/rbiom/src/init.c |only rbiom-2.0.10/rbiom/src/pthreads.c |only rbiom-2.0.10/rbiom/src/rarefy.c |only rbiom-2.0.10/rbiom/src/read_tree.c |only rbiom-2.0.10/rbiom/src/unifrac.c |only rbiom-2.0.10/rbiom/tests/testthat/helper.r | 1 rbiom-2.0.10/rbiom/tests/testthat/test-adiv_table.r | 4 rbiom-2.0.10/rbiom/tests/testthat/test-bdiv_table.r | 32 - rbiom-2.0.10/rbiom/tests/testthat/test-distmat_stats.r | 2 rbiom-2.0.7/rbiom/R/RcppExports.R |only rbiom-2.0.7/rbiom/src/Makevars |only rbiom-2.0.7/rbiom/src/RcppExports.cpp |only rbiom-2.0.7/rbiom/src/parallel_beta_div.cpp |only rbiom-2.0.7/rbiom/src/parallel_unifrac.cpp |only rbiom-2.0.7/rbiom/src/rcpp_alpha_div.cpp |only rbiom-2.0.7/rbiom/src/rcpp_rarefy.cpp |only rbiom-2.0.7/rbiom/src/rcpp_treeIO.cpp |only 55 files changed, 614 insertions(+), 478 deletions(-)
Title: Comprehensive Analysis of Multi-Omics Data Using an Offset-Based
Method
Description: Priority-ElasticNet extends the Priority-LASSO method (Klau et al. (2018) <doi:10.1186/s12859-018-2344-6>) by incorporating the ElasticNet penalty, allowing for both L1 and L2 regularization.
This approach fits successive ElasticNet models for several blocks of (omics) data with different priorities, using the predicted values from each block as an offset for the subsequent block.
It also offers robust options to handle block-wise missingness in multi-omics data, improving the flexibility and applicability of the model in the presence of incomplete datasets.
Author: Laila Qadir Musib [aut, cre],
Eunice Carrasquinha [aut],
Helena Mourino [aut]
Maintainer: Laila Qadir Musib <statleila98@gmail.com>
Diff between priorityelasticnet versions 0.1.0 dated 2025-01-13 and 0.2.0 dated 2025-01-19
DESCRIPTION | 10 MD5 | 16 NAMESPACE | 1 R/priorityelasticnet.R | 1 build/vignette.rds |binary inst/doc/priorityelasticnet-vignettes.R | 1109 - inst/doc/priorityelasticnet-vignettes.Rmd | 2 inst/doc/priorityelasticnet-vignettes.html |20486 ++++++++++++++--------------- vignettes/priorityelasticnet-vignettes.Rmd | 2 9 files changed, 10803 insertions(+), 10824 deletions(-)
More information about priorityelasticnet at CRAN
Permanent link
Title: Read bigWig and bigBed Files
Description: Read bigWig and bigBed files using "libBigWig"
<https://github.com/dpryan79/libBigWig>. Provides lightweight access
to the binary bigWig and bigBed formats developed by the UCSC Genome
Browser group.
Author: Jay Hesselberth [aut, cre],
RNA Bioscience Initiative [fnd, cph],
Devon Ryan [cph]
Maintainer: Jay Hesselberth <jay.hesselberth@gmail.com>
Diff between cpp11bigwig versions 0.1.0 dated 2025-01-07 and 0.1.1 dated 2025-01-19
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ README.md | 2 ++ src/libBigWig/bigWig.h | 2 +- src/libBigWig/bwValues.c | 4 +--- 6 files changed, 16 insertions(+), 12 deletions(-)
Title: Tidy Plots for Scientific Papers
Description: The goal of 'tidyplots' is to streamline the creation of publication-ready plots for scientific papers. It allows to gradually add, remove and adjust plot components using a consistent and intuitive syntax.
Author: Jan Broder Engler [aut, cre, cph]
Maintainer: Jan Broder Engler <broder.engler@gmail.com>
Diff between tidyplots versions 0.2.0 dated 2024-12-16 and 0.2.1 dated 2025-01-19
tidyplots-0.2.0/tidyplots/tests/testthat/_snaps/add-misc/add-reference-lines.svg |only tidyplots-0.2.0/tidyplots/tests/testthat/_snaps/add-misc/add-title-and-caption.svg |only tidyplots-0.2.1/tidyplots/DESCRIPTION | 10 tidyplots-0.2.1/tidyplots/MD5 | 61 +-- tidyplots-0.2.1/tidyplots/NAMESPACE | 4 tidyplots-0.2.1/tidyplots/NEWS.md | 16 tidyplots-0.2.1/tidyplots/R/add-annotation.R |only tidyplots-0.2.1/tidyplots/R/add-misc.R | 187 ---------- tidyplots-0.2.1/tidyplots/R/add-proportional.R | 30 - tidyplots-0.2.1/tidyplots/R/adjust.R | 9 tidyplots-0.2.1/tidyplots/R/helpers.R | 4 tidyplots-0.2.1/tidyplots/R/plot.R | 13 tidyplots-0.2.1/tidyplots/R/tidycolor.R | 9 tidyplots-0.2.1/tidyplots/README.md | 4 tidyplots-0.2.1/tidyplots/data/energy.rda |binary tidyplots-0.2.1/tidyplots/man/add_annotation_text.Rd |only tidyplots-0.2.1/tidyplots/man/add_areastack_absolute.Rd | 10 tidyplots-0.2.1/tidyplots/man/add_barstack_absolute.Rd | 14 tidyplots-0.2.1/tidyplots/man/add_data_labels.Rd | 2 tidyplots-0.2.1/tidyplots/man/add_histogram.Rd | 4 tidyplots-0.2.1/tidyplots/man/add_pie.Rd | 6 tidyplots-0.2.1/tidyplots/man/add_reference_lines.Rd | 2 tidyplots-0.2.1/tidyplots/man/add_title.Rd | 2 tidyplots-0.2.1/tidyplots/man/colors_discrete_friendly.Rd | 11 tidyplots-0.2.1/tidyplots/man/figures/README-unnamed-chunk-3-1.png |binary tidyplots-0.2.1/tidyplots/man/figures/README-unnamed-chunk-4-1.png |binary tidyplots-0.2.1/tidyplots/man/flip_plot.Rd | 4 tidyplots-0.2.1/tidyplots/man/save_plot.Rd | 3 tidyplots-0.2.1/tidyplots/man/split_plot.Rd | 8 tidyplots-0.2.1/tidyplots/tests/testthat/_snaps/add-annotation |only tidyplots-0.2.1/tidyplots/tests/testthat/test-add-annotation.R |only tidyplots-0.2.1/tidyplots/tests/testthat/test-add-misc.R | 16 32 files changed, 140 insertions(+), 289 deletions(-)
Title: Joint Longitudinal and Survival Model for Big Data
Description: Provides analysis tools for big data where the sample size is very large. It offers
a suite of functions for fitting and predicting joint models, which allow for the simultaneous
analysis of longitudinal and time-to-event data. This statistical methodology is particularly
useful in medical research where there is often interest in understanding the relationship
between a longitudinal biomarker and a clinical outcome, such as survival or disease progression.
This can be particularly useful in a clinical setting where it is important to be able to predict
how a patient's health status may change over time. Overall, this package provides a
comprehensive set of tools for joint modeling of BIG data obtained as survival and
longitudinal outcomes with both Bayesian and non-Bayesian approaches. Its versatility
and flexibility make it a valuable resource for researchers in many different fields,
particularly in the medical and health sciences.
Author: Atanu Bhattacharjee [aut, cre, ctb],
Bhrigu Kumar Rajbongshi [aut, ctb],
Gajendra K Vishwakarma [aut, ctb]
Maintainer: Atanu Bhattacharjee <atanustat@gmail.com>
Diff between jmBIG versions 0.1.2 dated 2024-03-20 and 0.1.3 dated 2025-01-19
jmBIG-0.1.2/jmBIG/man/print.Rd |only jmBIG-0.1.3/jmBIG/DESCRIPTION | 6 +- jmBIG-0.1.3/jmBIG/MD5 | 19 +++---- jmBIG-0.1.3/jmBIG/NAMESPACE | 1 jmBIG-0.1.3/jmBIG/R/prediction.R | 6 +- jmBIG-0.1.3/jmBIG/R/print.R | 80 +++++++----------------------- jmBIG-0.1.3/jmBIG/man/predJRML.Rd | 4 + jmBIG-0.1.3/jmBIG/man/print.jmbayesBig.Rd | 6 -- jmBIG-0.1.3/jmBIG/man/print.jmcsBig.Rd | 6 -- jmBIG-0.1.3/jmBIG/man/print.jmstanBig.Rd | 6 -- jmBIG-0.1.3/jmBIG/man/print.joinRMLBig.Rd | 6 -- 11 files changed, 46 insertions(+), 94 deletions(-)
Title: SHAP Visualizations
Description: Visualizations for SHAP (SHapley Additive exPlanations), such
as waterfall plots, force plots, various types of importance plots,
dependence plots, and interaction plots. These plots act on a
'shapviz' object created from a matrix of SHAP values and a
corresponding feature dataset. Wrappers for the R packages 'xgboost',
'lightgbm', 'fastshap', 'shapr', 'h2o', 'treeshap', 'DALEX', and
'kernelshap' are added for convenience. By separating visualization
and computation, it is possible to display factor variables in graphs,
even if the SHAP values are calculated by a model that requires
numerical features. The plots are inspired by those provided by the
'shap' package in Python, but there is no dependency on it.
Author: Michael Mayer [aut, cre],
Adrian Stando [ctb]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between shapviz versions 0.9.6 dated 2024-10-11 and 0.9.7 dated 2025-01-19
DESCRIPTION | 6 +-- MD5 | 26 ++++++++-------- NAMESPACE | 2 - NEWS.md | 12 +++++++ R/shapviz.R | 65 ++++++++++++++++++++++------------------ README.md | 2 - inst/doc/basic_use.Rmd | 28 ++++++++++++----- inst/doc/basic_use.html | 58 ++++++++++++++++++++++------------- inst/doc/geographic.html | 10 +++--- inst/doc/multiple_output.html | 16 ++++----- inst/doc/tidymodels.html | 24 +++++++------- man/shapviz.Rd | 52 ++++++++++++++++++++------------ tests/testthat/test-interface.R | 6 +-- vignettes/basic_use.Rmd | 28 ++++++++++++----- 14 files changed, 202 insertions(+), 133 deletions(-)
Title: Wrapper for the 'AT' Protocol Behind 'Bluesky'
Description: Wraps the 'AT' Protocol (Authenticated Transfer Protocol) behind
'Bluesky' <https://bsky.social>. Functions can be used for, among others,
retrieving posts and followers from the network or posting content.
Author: Johannes B. Gruber [aut, cre] ,
Benjamin Guinaudeau [aut, ctb]
,
Fabio Votta [aut, ctb]
Maintainer: Johannes B. Gruber <JohannesB.Gruber@gmail.com>
Diff between atrrr versions 0.0.4 dated 2024-10-03 and 0.0.5 dated 2025-01-19
atrrr-0.0.4/atrrr/inst/lexicons/app/bsky/unspecced/getPopular.json |only atrrr-0.0.4/atrrr/inst/lexicons/app/bsky/unspecced/getTimelineSkeleton.json |only atrrr-0.0.4/atrrr/inst/lexicons/com/atproto/admin/getModerationAction.json |only atrrr-0.0.4/atrrr/inst/lexicons/com/atproto/admin/getModerationActions.json |only atrrr-0.0.4/atrrr/inst/lexicons/com/atproto/admin/getModerationReport.json |only atrrr-0.0.4/atrrr/inst/lexicons/com/atproto/admin/getModerationReports.json |only atrrr-0.0.4/atrrr/inst/lexicons/com/atproto/admin/getRecord.json |only atrrr-0.0.4/atrrr/inst/lexicons/com/atproto/admin/getRepo.json |only atrrr-0.0.4/atrrr/inst/lexicons/com/atproto/admin/resolveModerationReports.json |only atrrr-0.0.4/atrrr/inst/lexicons/com/atproto/admin/reverseModerationAction.json |only atrrr-0.0.4/atrrr/inst/lexicons/com/atproto/admin/searchRepos.json |only atrrr-0.0.4/atrrr/inst/lexicons/com/atproto/admin/takeModerationAction.json |only atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.actor.getProfiles_23a5a.rds |only atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.actor.getProfiles_63d49.rds |only atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.actor.getProfiles_a7fb6.rds |only atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.actor.getProfiles_c1f6f.rds |only atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/com.atproto.server.createSession_a4fa7.rds |only atrrr-0.0.5/atrrr/DESCRIPTION | 11 atrrr-0.0.5/atrrr/MD5 | 494 ++++++---- atrrr-0.0.5/atrrr/NAMESPACE | 3 atrrr-0.0.5/atrrr/NEWS.md | 12 atrrr-0.0.5/atrrr/R/auth.r | 2 atrrr-0.0.5/atrrr/R/auto_app_bsky_actor.R | 14 atrrr-0.0.5/atrrr/R/auto_app_bsky_feed.R | 69 + atrrr-0.0.5/atrrr/R/auto_app_bsky_graph.R | 154 ++- atrrr-0.0.5/atrrr/R/auto_app_bsky_labeler.R |only atrrr-0.0.5/atrrr/R/auto_app_bsky_notification.R | 28 atrrr-0.0.5/atrrr/R/auto_app_bsky_unspecced.R | 58 - atrrr-0.0.5/atrrr/R/auto_app_bsky_video.R |only atrrr-0.0.5/atrrr/R/auto_chat_bsky_actor.R |only atrrr-0.0.5/atrrr/R/auto_chat_bsky_convo.R |only atrrr-0.0.5/atrrr/R/auto_chat_bsky_moderation.R |only atrrr-0.0.5/atrrr/R/auto_com_atproto_admin.R | 162 +-- atrrr-0.0.5/atrrr/R/auto_com_atproto_identity.R | 68 + atrrr-0.0.5/atrrr/R/auto_com_atproto_label.R | 2 atrrr-0.0.5/atrrr/R/auto_com_atproto_moderation.R | 2 atrrr-0.0.5/atrrr/R/auto_com_atproto_repo.R | 48 atrrr-0.0.5/atrrr/R/auto_com_atproto_server.R | 112 +- atrrr-0.0.5/atrrr/R/auto_com_atproto_sync.R | 34 atrrr-0.0.5/atrrr/R/auto_com_atproto_temp.R |only atrrr-0.0.5/atrrr/R/auto_tools_ozone_communication.R |only atrrr-0.0.5/atrrr/R/auto_tools_ozone_moderation.R |only atrrr-0.0.5/atrrr/R/auto_tools_ozone_server.R |only atrrr-0.0.5/atrrr/R/auto_tools_ozone_set.R |only atrrr-0.0.5/atrrr/R/auto_tools_ozone_setting.R |only atrrr-0.0.5/atrrr/R/auto_tools_ozone_signature.R |only atrrr-0.0.5/atrrr/R/auto_tools_ozone_team.R |only atrrr-0.0.5/atrrr/R/feed.r | 162 +++ atrrr-0.0.5/atrrr/R/gen.r | 13 atrrr-0.0.5/atrrr/R/graph.r | 4 atrrr-0.0.5/atrrr/R/lists.r |only atrrr-0.0.5/atrrr/R/parse.r | 54 - atrrr-0.0.5/atrrr/R/utils.r | 129 +- atrrr-0.0.5/atrrr/README.md | 89 + atrrr-0.0.5/atrrr/build/vignette.rds |binary atrrr-0.0.5/atrrr/data/list_lexicons.rda |binary atrrr-0.0.5/atrrr/inst/doc/Basic_Usage.Rmd | 2 atrrr-0.0.5/atrrr/inst/doc/Basic_Usage.html | 2 atrrr-0.0.5/atrrr/inst/doc/Interactions.Rmd | 2 atrrr-0.0.5/atrrr/inst/doc/Interactions.html | 2 atrrr-0.0.5/atrrr/inst/function.template | 8 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/actor/defs.json | 299 +++++- atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/actor/getPreferences.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/actor/getProfile.json | 7 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/actor/getProfiles.json | 1 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/actor/getSuggestions.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/actor/profile.json | 16 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/actor/putPreferences.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/actor/searchActors.json | 6 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/actor/searchActorsTypeahead.json | 6 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/embed/defs.json |only atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/embed/external.json | 4 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/embed/images.json | 43 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/embed/record.json | 25 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/embed/recordWithMedia.json | 14 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/embed/video.json |only atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/defs.json | 131 ++ atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/describeFeedGenerator.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/generator.json | 7 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/getActorFeeds.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/getActorLikes.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/getAuthorFeed.json | 10 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/getFeed.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/getFeedGenerator.json | 18 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/getFeedGenerators.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/getFeedSkeleton.json | 8 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/getLikes.json | 13 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/getListFeed.json | 8 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/getPostThread.json | 13 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/getPosts.json | 3 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/getQuotes.json |only atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/getRepostedBy.json | 13 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/getSuggestedFeeds.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/getTimeline.json | 7 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/like.json | 1 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/post.json | 24 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/postgate.json |only atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/repost.json | 1 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/searchPosts.json | 55 + atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/sendInteractions.json |only atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/feed/threadgate.json | 19 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/block.json | 8 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/defs.json | 107 ++ atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/follow.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/getActorStarterPacks.json |only atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/getBlocks.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/getFollowers.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/getFollows.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/getKnownFollowers.json |only atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/getList.json | 8 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/getListBlocks.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/getListMutes.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/getLists.json | 8 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/getMutes.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/getRelationships.json |only atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/getStarterPack.json |only atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/getStarterPacks.json |only atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/getSuggestedFollowsByActor.json | 7 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/list.json | 10 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/listblock.json | 8 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/listitem.json | 14 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/muteActor.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/muteActorList.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/muteThread.json |only atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/searchStarterPacks.json |only atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/starterpack.json |only atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/unmuteActor.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/unmuteActorList.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/graph/unmuteThread.json |only atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/labeler |only atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/notification/getUnreadCount.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/notification/listNotifications.json | 11 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/notification/putPreferences.json |only atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/notification/registerPush.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/notification/updateSeen.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/richtext/facet.json | 9 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/unspecced/defs.json | 7 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/unspecced/getConfig.json |only atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/unspecced/getPopularFeedGenerators.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/unspecced/getSuggestionsSkeleton.json |only atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/unspecced/getTaggedSuggestions.json |only atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/unspecced/searchActorsSkeleton.json | 15 atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/unspecced/searchPostsSkeleton.json | 60 + atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/unspecced/searchStarterPacksSkeleton.json |only atrrr-0.0.5/atrrr/inst/lexicons/app/bsky/video |only atrrr-0.0.5/atrrr/inst/lexicons/chat |only atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/admin/defs.json | 350 ------- atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/admin/deleteAccount.json |only atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/admin/disableAccountInvites.json | 4 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/admin/disableInviteCodes.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/admin/enableAccountInvites.json | 4 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/admin/getAccountInfo.json |only atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/admin/getAccountInfos.json |only atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/admin/getInviteCodes.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/admin/getSubjectStatus.json |only atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/admin/searchAccounts.json |only atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/admin/sendEmail.json | 11 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/admin/updateAccountEmail.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/admin/updateAccountHandle.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/admin/updateAccountPassword.json |only atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/admin/updateSubjectStatus.json |only atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/identity/getRecommendedDidCredentials.json |only atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/identity/requestPlcOperationSignature.json |only atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/identity/resolveHandle.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/identity/signPlcOperation.json |only atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/identity/submitPlcOperation.json |only atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/identity/updateHandle.json | 8 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/label/defs.json | 108 ++ atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/label/queryLabels.json | 6 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/label/subscribeLabels.json | 4 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/moderation/createReport.json | 16 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/moderation/defs.json | 7 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/repo/applyWrites.json | 73 + atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/repo/createRecord.json | 32 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/repo/defs.json |only atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/repo/deleteRecord.json | 22 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/repo/describeRepo.json | 13 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/repo/getRecord.json | 7 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/repo/importRepo.json |only atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/repo/listMissingBlobs.json |only atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/repo/listRecords.json | 4 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/repo/putRecord.json | 25 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/repo/uploadBlob.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/server/activateAccount.json |only atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/server/checkAccountStatus.json |only atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/server/createAccount.json | 43 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/server/createAppPassword.json | 14 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/server/createInviteCodes.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/server/createSession.json | 18 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/server/deactivateAccount.json |only atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/server/deleteAccount.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/server/deleteSession.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/server/describeServer.json | 39 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/server/getAccountInviteCodes.json | 8 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/server/getServiceAuth.json |only atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/server/getSession.json | 12 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/server/listAppPasswords.json | 5 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/server/refreshSession.json | 11 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/server/requestEmailConfirmation.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/server/reserveSigningKey.json |only atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/server/revokeAppPassword.json | 2 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/server/updateEmail.json | 1 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/sync/getBlob.json | 13 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/sync/getBlocks.json | 11 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/sync/getLatestCommit.json | 9 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/sync/getRecord.json | 15 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/sync/getRepo.json | 12 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/sync/getRepoStatus.json |only atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/sync/listBlobs.json | 12 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/sync/listRepos.json | 17 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/sync/notifyOfUpdate.json | 4 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/sync/requestCrawl.json | 4 atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/sync/subscribeRepos.json | 118 ++ atrrr-0.0.5/atrrr/inst/lexicons/com/atproto/temp |only atrrr-0.0.5/atrrr/inst/lexicons/tools |only atrrr-0.0.5/atrrr/man/atrrr-package.Rd | 1 atrrr-0.0.5/atrrr/man/get_actor_likes.Rd |only atrrr-0.0.5/atrrr/man/get_followers.Rd | 4 atrrr-0.0.5/atrrr/man/get_list.Rd |only atrrr-0.0.5/atrrr/man/get_skeets_authored_by.Rd | 3 atrrr-0.0.5/atrrr/man/get_starter_pack.Rd |only atrrr-0.0.5/atrrr/man/post.Rd | 4 atrrr-0.0.5/atrrr/man/search_post.Rd | 77 + atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.actor.getProfiles_01031.rds |only atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.actor.getProfiles_0f35e.rds |only atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.actor.getProfiles_3ed2a.rds |only atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.actor.getProfiles_a3350.rds |binary atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.actor.getProfiles_f39c7.rds |binary atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.actor.getProfiles_f9a85.rds |only atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.actor.searchActors_275e3.rds |binary atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.actor.searchActors_5a4e3.rds |binary atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.actor.searchActors_87617.rds |binary atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getActorFeeds_925c2.rds |binary atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getAuthorFeed_925c2.rds |binary atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getFeed_0bf27.rds |binary atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getLikes_26bda.rds |binary atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getLikes_95deb.rds |binary atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getListFeed_dc533.rds |only atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getListFeed_e838b.rds |only atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getPostThread_72827.rds |binary atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getPostThread_aa665.rds |binary atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getRepostedBy_95deb.rds |binary atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getTimeline_6340d.rds |binary atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getTimeline_730cb.rds |binary atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.feed.searchPosts_0e3ec.rds |binary atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.feed.searchPosts_b1263.rds |only atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.feed.searchPosts_bb16d.rds |binary atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.graph.getList_dc533.rds |only atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.graph.getStarterPack_90b35.rds |only atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/app.bsky.unspecced.getPopularFeedGenerators_8e00b.rds |binary atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/com.atproto.identity.resolveHandle_50198.rds |only atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/com.atproto.identity.resolveHandle_c4567.rds |only atrrr-0.0.5/atrrr/tests/testthat/recorded_responses/com.atproto.identity.resolveHandle_c81f8.rds |binary atrrr-0.0.5/atrrr/tests/testthat/setup-mock.R | 5 atrrr-0.0.5/atrrr/tests/testthat/test-actors.R | 4 atrrr-0.0.5/atrrr/tests/testthat/test-feed.R | 14 atrrr-0.0.5/atrrr/tests/testthat/test-lists.R |only atrrr-0.0.5/atrrr/tests/testthat/test-utils.R | 24 atrrr-0.0.5/atrrr/vignettes/Basic_Usage.Rmd | 2 atrrr-0.0.5/atrrr/vignettes/Basic_Usage.Rmd.orig | 2 atrrr-0.0.5/atrrr/vignettes/Interactions.Rmd | 2 atrrr-0.0.5/atrrr/vignettes/Interactions.Rmd.orig | 2 262 files changed, 2898 insertions(+), 1140 deletions(-)
Title: Parse and Manipulate Research Patient Data Registry ('RPDR')
Text Queries
Description: Functions to load Research Patient Data Registry ('RPDR') text queries from Partners Healthcare institutions into R.
The package also provides helper functions to manipulate data and execute common procedures
such as finding the closest radiological exams considering a given timepoint, or creating a DICOM header database
from the downloaded images. All functionalities are parallelized for fast and efficient analyses.
Author: Marton Kolossvary [aut, cre]
Maintainer: Marton Kolossvary <mkolossvary@mgh.harvard.edu>
Diff between parseRPDR versions 1.1.1 dated 2024-04-03 and 1.1.2 dated 2025-01-19
DESCRIPTION | 10 +++++----- MD5 | 30 +++++++++++++++--------------- NEWS.md | 3 +++ R/ZZZ.R | 3 --- R/convert_dia.R | 2 ++ R/convert_enc.R | 3 +++ R/convert_lab.R | 2 +- R/convert_med.R | 2 ++ R/convert_notes.R | 3 +++ R/convert_phy.R | 2 ++ R/convert_prc.R | 2 ++ R/convert_rfv.R | 3 +++ R/find_exam_ram.R | 2 ++ R/load_all_data.R | 3 +++ R/parse_ids.R | 3 +++ R/pretty_mrn.R | 2 ++ 16 files changed, 51 insertions(+), 24 deletions(-)
Title: Infinitesimally Robust Estimators for Preprocessing -Omics Data
Description: Functions for the determination of optimally robust influence curves and
estimators for preprocessing omics data, in particular gene expression data (Kohl
and Deigner (2010), <doi:10.1186/1471-2105-11-583>).
Author: Matthias Kohl [aut, cre, cph]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between RobLoxBioC versions 1.2.2 dated 2024-02-11 and 1.2.3 dated 2025-01-19
DESCRIPTION | 20 - MD5 | 12 R/KolmogorovMinDist.R | 686 ++++++++++++++++++++++----------------------- inst/CITATION | 9 inst/NEWS | 12 man/0RobLoxBioC-package.Rd | 88 ++--- man/robloxbioc.Rd | 373 ++++++++++++------------ 7 files changed, 606 insertions(+), 594 deletions(-)
Title: Ternary Residual Effect Designs
Description: There are some experimental scenarios where each experimental unit receives a sequence of treatments across multiple periods, and treatment effects persist beyond the period of application. It focuses on the construction and calculation of the parametric value of the residual effect designs balanced for carryover effects, also referred to as crossover designs, change-over designs, or repeated measurements designs (Aggarwal and Jha, 2010<doi:10.1080/15598608.2010.10412013>). The primary objective of the package is to generate a new class of Balanced Ternary Residual Effect Designs (BTREDs), balanced for carryover effects tailored explicitly for situations where the number of periods is less than or equal to the number of treatments. In addition, the package provides four new classes of Partially Balanced Ternary Residual Effect Designs (PBTREDs), constructed using incomplete block designs, initial sequences, and rectangular association scheme. In addition, one extra function is in [...truncated...]
Author: Akhilesh Jha [aut],
Cini Varghese [aut],
Seema Jaggi [aut],
Mohd Harun [aut],
Ashutosh Dalal [aut, cre]
Maintainer: Ashutosh Dalal <ashutosh.dalal97@gmail.com>
Diff between TREDesigns versions 1.0.0 dated 2024-12-11 and 1.0.1 dated 2025-01-19
TREDesigns-1.0.0/TREDesigns/man/Study_tRED.Rd |only TREDesigns-1.0.1/TREDesigns/DESCRIPTION | 6 +++--- TREDesigns-1.0.1/TREDesigns/MD5 | 18 +++++++++--------- TREDesigns-1.0.1/TREDesigns/NAMESPACE | 2 +- TREDesigns-1.0.1/TREDesigns/R/BtRED.R | 2 +- TREDesigns-1.0.1/TREDesigns/R/PBtRED1.R | 2 +- TREDesigns-1.0.1/TREDesigns/R/PBtRED2.R | 6 +++--- TREDesigns-1.0.1/TREDesigns/R/PBtRED3.R | 2 +- TREDesigns-1.0.1/TREDesigns/R/PBtRED4.R | 2 +- TREDesigns-1.0.1/TREDesigns/R/Study_RED.R | 16 ++++++++-------- TREDesigns-1.0.1/TREDesigns/man/Study_RED.Rd |only 11 files changed, 28 insertions(+), 28 deletions(-)
Title: Bindings to the 'Geospatial Data Abstraction Library' Raster API
Description: Interface to the Raster API of the 'Geospatial Data Abstraction
Library' ('GDAL', <https://gdal.org>). Bindings are implemented in an
exposed C++ class encapsulating a 'GDALDataset' and its raster band
objects, along with several stand-alone functions. These support manual
creation of uninitialized datasets, creation from existing raster as
template, read/set dataset parameters, low level I/O, color tables, raster
attribute tables, virtual raster (VRT), and 'gdalwarp' wrapper for
reprojection and mosaicing. Includes 'GDAL' algorithms ('dem_proc()',
'polygonize()', 'rasterize()', etc.), and functions for coordinate
transformation and spatial reference systems. Calling signatures resemble
the native C, C++ and Python APIs provided by the 'GDAL' project. Includes
raster 'calc()' to evaluate a given R expression on a layer or stack of
layers, with pixel x/y available as variables in the expression; and raster
'combine()' to identify and count unique pixel combinations across multiple [...truncated...]
Author: Chris Toney [aut, cre] ,
Michael D. Sumner [ctb],
Frank Warmerdam [ctb, cph] ,
Even Rouault [ctb, cph] ,
Marius Appel [ctb, cph] ,
Daniel James [ctb, cph] ,
Peter Dimov [ctb, cph]
Maintainer: Chris Toney <chris.toney@usda.gov>
Diff between gdalraster versions 1.11.1 dated 2024-06-13 and 1.12.0 dated 2025-01-19
DESCRIPTION | 8 MD5 | 139 ++++++----- NEWS.md | 23 + R/RcppExports.R | 131 ++++++++--- R/display.R | 70 +++++ R/gdal_helpers.R | 103 ++++++++ R/gdalraster.R | 30 +- R/gdalraster_proc.R | 73 +++--- R/ogr_define.R | 22 + R/ogr_manage.R | 8 R/vsifile.R | 10 README.md | 16 - build/vignette.rds |binary configure | 18 - configure.ac | 2 inst/doc/gdal-config-quick-ref.Rmd | 36 +-- inst/doc/gdal-config-quick-ref.html | 36 +-- inst/doc/raster-api-tutorial.R | 6 inst/doc/raster-api-tutorial.Rmd | 14 - inst/doc/raster-api-tutorial.html | 388 ++++++++++++++++----------------- inst/doc/raster-attribute-tables.Rmd | 4 inst/doc/raster-attribute-tables.html | 323 ++++++++++++++------------- inst/extdata/poly_multipoly.dbf |only inst/extdata/poly_multipoly.prj |only inst/extdata/poly_multipoly.shp |only inst/extdata/poly_multipoly.shx |only inst/extdata/small_world_and_byte.gpkg |only man/DEFAULT_DEM_PROC.Rd | 21 - man/GDALRaster-class.Rd | 30 +- man/VSIFile-class.Rd | 10 man/addFilesInZip.Rd | 4 man/buildVRT.Rd | 2 man/createColorRamp.Rd | 2 man/dem_proc.Rd | 4 man/footprint.Rd | 2 man/gdal_formats.Rd | 2 man/gdalraster-package.Rd | 18 - man/get_config_option.Rd | 2 man/has_spatialite.Rd | 2 man/identifyDriver.Rd |only man/inspectDataset.Rd |only man/inv_project.Rd | 8 man/ogr2ogr.Rd | 2 man/ogr_define.Rd | 6 man/ogr_manage.Rd | 8 man/ogrinfo.Rd | 2 man/plot_raster.Rd | 17 + man/polygonize.Rd | 2 man/rasterToVRT.Rd | 2 man/rasterize.Rd | 2 man/read_ds.Rd | 1 man/set_config_option.Rd | 2 man/transform_xy.Rd | 14 - man/translate.Rd | 2 man/vsi_copy_file.Rd | 2 man/vsi_get_fs_options.Rd | 2 man/vsi_get_fs_prefixes.Rd | 2 man/vsi_read_dir.Rd | 27 +- man/vsi_stat.Rd | 2 man/warp.Rd | 8 src/RcppExports.cpp | 62 +++-- src/gdal_exp.cpp | 124 +++++++++- src/gdal_vsi.cpp | 54 +++- src/gdalraster.h | 6 src/transform.cpp | 58 ++-- src/transform.h |only src/wkt_conv.cpp | 16 - src/wkt_conv.h |only tests/testthat/test-VSIFile-class.R | 4 tests/testthat/test-gdal_exp.R | 12 + tests/testthat/test-gdal_helpers.R | 52 ++++ tests/testthat/test-gdalraster_proc.R | 9 vignettes/gdal-config-quick-ref.Rmd | 36 +-- vignettes/raster-api-tutorial.Rmd | 14 - vignettes/raster-attribute-tables.Rmd | 4 75 files changed, 1325 insertions(+), 796 deletions(-)
Title: Gene Set Analysis Using the Gene Set Ordinal Association Test
Description: Perform gene set enrichment analyses using the Gene set Ordinal
Association Test (GOAT) algorithm and visualize your
results. Koopmans, F. (2024) <doi:10.1038/s42003-024-06454-5>.
Author: Frank Koopmans [aut, cre]
Maintainer: Frank Koopmans <ftwkoopmans@gmail.com>
Diff between goat versions 1.0 dated 2024-04-30 and 1.1 dated 2025-01-19
DESCRIPTION | 17 +- LICENSE.note | 4 MD5 | 44 +++-- NAMESPACE | 2 NEWS.md | 8 + R/download_data.R | 46 ++++-- R/load_genesets_go.R | 93 ++++++++++-- R/load_genesets_syngo.R | 2 R/save_genesets.R | 27 ++- R/simplify_ontology.R | 8 - R/test_genesets_goat.R | 10 - R/utils.R | 22 ++ README.md | 259 +++++++++++++++++++--------------- inst/CITATION | 7 man/available_genesets_goatrepo.Rd |only man/download_genesets_goatrepo.Rd | 17 +- man/go_gene2go.Rd | 2 man/go_obo.Rd | 2 man/load_genesets_go_bioconductor.Rd | 19 ++ man/load_genesets_go_fromfile.Rd | 9 - man/load_genesets_syngo.Rd | 2 man/taxonomy_identifiers.Rd |only man/test_genesets_goat_precomputed.Rd | 4 man/treemap_data.Rd | 2 24 files changed, 399 insertions(+), 207 deletions(-)
Title: 'MsgPack' C++ Header Files and Interface Functions for R
Description: 'MsgPack' header files are provided for use by R packages, along
with the ability to access, create and alter 'MsgPack' objects directly from R.
'MsgPack' is an efficient binary serialization format. It lets you exchange
data among multiple languages like 'JSON' but it is faster and smaller.
Small integers are encoded into a single byte, and typical short strings
require only one extra byte in addition to the strings themselves. This
package provides headers from the 'msgpack-c' implementation for C and
C++(11) for use by R, particularly 'Rcpp'. The included 'msgpack-c' headers
are licensed under the Boost Software License (Version 1.0); the code added
by this package as well the R integration are licensed under the GPL (>= 2).
See the files 'COPYRIGHTS' and 'AUTHORS' for a full list of copyright holders
and contributors to 'msgpack-c'.
Author: Dirk Eddelbuettel [aut, cre] ,
Travers Ching [aut],
MsgPack Authors [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppMsgPack versions 0.2.3 dated 2018-11-18 and 0.2.4 dated 2025-01-19
ChangeLog | 71 ++++++++++++ DESCRIPTION | 22 ++- MD5 | 25 ++-- R/functions.r | 70 ++++++------ README.md | 75 ++++++++----- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION |only inst/NEWS.Rd | 13 ++ inst/doc/vignette.R | 2 inst/doc/vignette.html | 221 ++++++++++++++++++++++++++-------------- src/Makevars | 6 - src/RcppExports.cpp | 4 src/rcppmsgpack_c_functions.cpp | 6 - 14 files changed, 347 insertions(+), 168 deletions(-)
Title: Version-Control for CRAN, GitHub, and GitLab Packages
Description: Make R scripts reproducible, by ensuring that
every time a given script is run, the same version of the used packages are
loaded (instead of whichever version the user running the script happens to
have installed). This is achieved by using the command
groundhog.library() instead of the base command library(), and including a
date in the call. The date is used to call on the same version of the
package every time (the most recent version available at that date).
Load packages from CRAN, GitHub, or Gitlab.
Author: Uri Simonsohn [aut, cre] ,
Hugo Gruson [ctb, aut]
Maintainer: Uri Simonsohn <urisohn@gmail.com>
Diff between groundhog versions 3.2.1 dated 2024-09-29 and 3.2.2 dated 2025-01-19
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/toc.R | 15 +++++++++++++++ R/utils.R | 26 ++++++++++++-------------- R/validate.clone_date.R | 2 +- R/validate.groundhog.library.R | 10 ++++------ 6 files changed, 40 insertions(+), 29 deletions(-)
Title: Interface to Bank of Japan Statistics
Description: Provides an interface to Bank of Japan <https://www.boj.or.jp>
statistics.
Author: Stefan Angrick [aut, cre, cph]
Maintainer: Stefan Angrick <contact@stefanangrick.net>
Diff between BOJ versions 0.3 dated 2022-01-04 and 0.3.4 dated 2025-01-19
DESCRIPTION | 11 - LICENSE | 2 MD5 | 23 +- NAMESPACE | 1 R/BOJ.R | 348 ++++++++++++++++++++++--------------- build/vignette.rds |binary inst/doc/BOJ.R | 70 +++---- inst/doc/BOJ.Rmd | 70 +++---- inst/doc/BOJ.html | 449 +++++++++++++++++++++++++++++++++--------------- man/get_boj.Rd | 20 +- man/get_boj_datasets.Rd | 18 + man/pivot_longer_boj.Rd |only vignettes/BOJ.Rmd | 70 +++---- 13 files changed, 674 insertions(+), 408 deletions(-)
Title: Easy Access to NetCDF Files with CF Metadata Conventions
Description: Network Common Data Form ('netCDF') files are widely used for
scientific data. Library-level access in R is provided through packages
'RNetCDF' and 'ncdf4'. Package 'ncdfCF' is built on top of 'RNetCDF' and
makes the data and its attributes available as a set of R6 classes that are
informed by the Climate and Forecasting Metadata Conventions. Access to the
data uses standard R subsetting operators and common function forms.
Author: Patrick Van Laake [aut, cre, cph]
Maintainer: Patrick Van Laake <patrick@vanlaake.net>
Diff between ncdfCF versions 0.2.1 dated 2024-10-14 and 0.3.0 dated 2025-01-19
ncdfCF-0.2.1/ncdfCF/R/CFread.R |only ncdfCF-0.2.1/ncdfCF/man/sub-.CFVariable.Rd |only ncdfCF-0.3.0/ncdfCF/DESCRIPTION | 16 ncdfCF-0.3.0/ncdfCF/MD5 | 151 ++++---- ncdfCF-0.3.0/ncdfCF/NAMESPACE | 24 - ncdfCF-0.3.0/ncdfCF/NEWS.md | 115 +++--- ncdfCF-0.3.0/ncdfCF/R/AOI.R | 16 ncdfCF-0.3.0/ncdfCF/R/AOImethod.R | 6 ncdfCF-0.3.0/ncdfCF/R/CFAuxiliaryLongLat.R | 24 - ncdfCF-0.3.0/ncdfCF/R/CFAxis.R | 160 +++++--- ncdfCF-0.3.0/ncdfCF/R/CFAxisCharacter.R | 108 ++--- ncdfCF-0.3.0/ncdfCF/R/CFAxisDiscrete.R | 45 +- ncdfCF-0.3.0/ncdfCF/R/CFAxisLatitude.R | 19 - ncdfCF-0.3.0/ncdfCF/R/CFAxisLongitude.R | 27 - ncdfCF-0.3.0/ncdfCF/R/CFAxisNumeric.R | 88 ++-- ncdfCF-0.3.0/ncdfCF/R/CFAxisScalar.R | 51 +- ncdfCF-0.3.0/ncdfCF/R/CFAxisTime.R | 111 +++-- ncdfCF-0.3.0/ncdfCF/R/CFAxisVertical.R | 18 ncdfCF-0.3.0/ncdfCF/R/CFBounds.R | 12 ncdfCF-0.3.0/ncdfCF/R/CFData.R | 37 - ncdfCF-0.3.0/ncdfCF/R/CFDataset.R | 142 ++++--- ncdfCF-0.3.0/ncdfCF/R/CFGridMapping.R | 17 ncdfCF-0.3.0/ncdfCF/R/CFLabel.R |only ncdfCF-0.3.0/ncdfCF/R/CFObject.R | 37 + ncdfCF-0.3.0/ncdfCF/R/CFResource.R | 52 +- ncdfCF-0.3.0/ncdfCF/R/CFVariable.R | 414 +--------------------- ncdfCF-0.3.0/ncdfCF/R/CFVariableGeneric.R |only ncdfCF-0.3.0/ncdfCF/R/CFVariableL3b.R |only ncdfCF-0.3.0/ncdfCF/R/NCDimension.R | 24 - ncdfCF-0.3.0/ncdfCF/R/NCGroup.R | 222 +++++++---- ncdfCF-0.3.0/ncdfCF/R/NCObject.R | 42 -- ncdfCF-0.3.0/ncdfCF/R/NCUDT.R | 30 - ncdfCF-0.3.0/ncdfCF/R/NCVariable.R | 38 +- ncdfCF-0.3.0/ncdfCF/R/makeCFObjects.R |only ncdfCF-0.3.0/ncdfCF/R/ncdfCF-package.R | 29 - ncdfCF-0.3.0/ncdfCF/R/readCF.R |only ncdfCF-0.3.0/ncdfCF/R/utils.R | 19 - ncdfCF-0.3.0/ncdfCF/R/wkt2.R | 7 ncdfCF-0.3.0/ncdfCF/README.md | 129 +++--- ncdfCF-0.3.0/ncdfCF/TODO | 16 ncdfCF-0.3.0/ncdfCF/build/vignette.rds |binary ncdfCF-0.3.0/ncdfCF/inst/doc/R-CF.R |only ncdfCF-0.3.0/ncdfCF/inst/doc/R-CF.Rmd |only ncdfCF-0.3.0/ncdfCF/inst/doc/R-CF.html |only ncdfCF-0.3.0/ncdfCF/inst/doc/Using_ncdfCF.R | 12 ncdfCF-0.3.0/ncdfCF/inst/doc/Using_ncdfCF.Rmd | 20 - ncdfCF-0.3.0/ncdfCF/inst/doc/Using_ncdfCF.html | 362 ++++++++----------- ncdfCF-0.3.0/ncdfCF/man/CFAuxiliaryLongLat.Rd | 16 ncdfCF-0.3.0/ncdfCF/man/CFAxis.Rd | 135 ++++--- ncdfCF-0.3.0/ncdfCF/man/CFAxisCharacter.Rd | 20 - ncdfCF-0.3.0/ncdfCF/man/CFAxisDiscrete.Rd | 22 - ncdfCF-0.3.0/ncdfCF/man/CFAxisLatitude.Rd | 20 - ncdfCF-0.3.0/ncdfCF/man/CFAxisLongitude.Rd | 27 - ncdfCF-0.3.0/ncdfCF/man/CFAxisNumeric.Rd | 43 +- ncdfCF-0.3.0/ncdfCF/man/CFAxisScalar.Rd | 31 + ncdfCF-0.3.0/ncdfCF/man/CFAxisTime.Rd | 78 +++- ncdfCF-0.3.0/ncdfCF/man/CFAxisVertical.Rd | 15 ncdfCF-0.3.0/ncdfCF/man/CFBounds.Rd | 11 ncdfCF-0.3.0/ncdfCF/man/CFData.Rd | 16 ncdfCF-0.3.0/ncdfCF/man/CFDataset.Rd | 109 +++-- ncdfCF-0.3.0/ncdfCF/man/CFGridMapping.Rd | 13 ncdfCF-0.3.0/ncdfCF/man/CFLabel.Rd |only ncdfCF-0.3.0/ncdfCF/man/CFObject.Rd | 29 + ncdfCF-0.3.0/ncdfCF/man/CFResource.Rd | 57 +-- ncdfCF-0.3.0/ncdfCF/man/CFVariable.Rd | 152 +------- ncdfCF-0.3.0/ncdfCF/man/CFVariableGeneric.Rd |only ncdfCF-0.3.0/ncdfCF/man/CFVariableL3b.Rd |only ncdfCF-0.3.0/ncdfCF/man/MemoryGroup.Rd | 2 ncdfCF-0.3.0/ncdfCF/man/NCDimension.Rd | 37 + ncdfCF-0.3.0/ncdfCF/man/NCGroup.Rd | 356 +++++++++++++++++- ncdfCF-0.3.0/ncdfCF/man/NCObject.Rd | 49 +- ncdfCF-0.3.0/ncdfCF/man/NCUDT.Rd | 20 - ncdfCF-0.3.0/ncdfCF/man/NCVariable.Rd | 43 +- ncdfCF-0.3.0/ncdfCF/man/aoi.Rd | 10 ncdfCF-0.3.0/ncdfCF/man/makeLatitudeAxis.Rd |only ncdfCF-0.3.0/ncdfCF/man/makeLongitudeAxis.Rd |only ncdfCF-0.3.0/ncdfCF/man/makeMemoryGroup.Rd |only ncdfCF-0.3.0/ncdfCF/man/makeTimeAxis.Rd |only ncdfCF-0.3.0/ncdfCF/man/ncdfCF-package.Rd | 29 - ncdfCF-0.3.0/ncdfCF/man/open_ncdf.Rd | 5 ncdfCF-0.3.0/ncdfCF/man/peek_ncdf.Rd |only ncdfCF-0.3.0/ncdfCF/man/str.CFDataset.Rd |only ncdfCF-0.3.0/ncdfCF/man/sub-.CFVariableGeneric.Rd |only ncdfCF-0.3.0/ncdfCF/man/sub-.CFVariableL3b.Rd |only ncdfCF-0.3.0/ncdfCF/man/sub-sub-.CFDataset.Rd | 8 ncdfCF-0.3.0/ncdfCF/vignettes/CF-elements.png |only ncdfCF-0.3.0/ncdfCF/vignettes/R-CF.Rmd |only ncdfCF-0.3.0/ncdfCF/vignettes/Using_ncdfCF.Rmd | 20 - 88 files changed, 2155 insertions(+), 1858 deletions(-)
Title: Instrumental-Variables Regression by '2SLS', '2SM', or '2SMM',
with Diagnostics
Description: Instrumental variable estimation for linear models by two-stage least-squares (2SLS) regression or by robust-regression via M-estimation (2SM) or MM-estimation (2SMM). The main ivreg() model-fitting function is designed to provide a workflow as similar as possible to standard lm() regression. A wide range of methods is provided for fitted ivreg model objects, including extensive functionality for computing and graphing regression diagnostics in addition to other standard model tools.
Author: John Fox [aut] ,
Christian Kleiber [aut] ,
Achim Zeileis [aut, cre] ,
Nikolas Kuschnig [ctb] ,
R Core Team [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between ivreg versions 0.6-4 dated 2024-09-18 and 0.6-5 dated 2025-01-19
DESCRIPTION | 8 MD5 | 19 - NEWS.md | 11 R/ivreg.R | 4 R/ivregMethods.R | 295 -------------------------- R/summary.ivreg.R |only inst/doc/Diagnostics-for-2SLS-Regression.html | 37 +-- man/ivreg.Rd | 4 man/ivregMethods.Rd | 77 ------ man/summary.ivreg.Rd |only tests/testthat.R | 4 tests/testthat/test-vcov.R |only 12 files changed, 73 insertions(+), 386 deletions(-)
Title: Computation and Decomposition of the Mutual Information Index
Description: The Mutual Information Index (M) introduced to social science literature by
Theil and Finizza (1971) <doi:10.1080/0022250X.1971.9989795> is a multigroup
segregation measure that is highly decomposable and that according to Frankel
and Volij (2011) <doi:10.1016/j.jet.2010.10.008> and Mora and Ruiz-Castillo
(2011) <doi:10.1111/j.1467-9531.2011.01237.x> satisfies the Strong Unit
Decomposability and Strong Group Decomposability properties. This package allows
computing and decomposing the total index value into its "between" and
"within" terms. These last terms can also be decomposed into their
contributions, either by group or unit characteristics. The factors that produce
each "within" term can also be displayed at the user's request. The results can
be computed considering a variable or sets of variables that define separate
clusters.
Author: Cristian Angulo-Gonzalez [aut, cre],
Rafael Fuentealba-Chaura [aut],
Ricardo Mora [aut],
Julio Rojas-Mora [aut],
FONDECYT/ANID Project 11170583 [fnd],
MCIN/AEI/10.13039/501100011033 [fnd],
UCT VIP Project FEQUIP2019-INRN-03 [fnd]
Maintainer: Cristian Angulo-Gonzalez <cristian_world@hotmail.cl>
Diff between mutualinf versions 2.0.2 dated 2025-01-18 and 2.0.3 dated 2025-01-19
DESCRIPTION | 17 +++++++++-------- MD5 | 4 ++-- R/M.R | 6 ++---- 3 files changed, 13 insertions(+), 14 deletions(-)
Title: Interpolate Munsell Renotation Data from Hue Value/Chroma to
CIE/RGB
Description: Methods for interpolating data in the Munsell color system following the ASTM D-1535 standard. Hues and chromas with decimal values can be interpolated and converted to/from the Munsell color system and CIE xyY, CIE XYZ, CIE Lab, CIE Luv, or RGB. Includes ISCC-NBS color block lookup. Based on the work by Paul Centore, "The Munsell and Kubelka-Munk Toolbox".
Author: Jose Gama [aut, trl],
Paul Centore [aut, cph],
Glenn Davis [aut, cre]
Maintainer: Glenn Davis <gdavis@gluonics.com>
Diff between munsellinterpol versions 3.0-0 dated 2022-04-07 and 3.1-0 dated 2025-01-19
munsellinterpol-3.0-0/munsellinterpol/R/logging.R |only munsellinterpol-3.0-0/munsellinterpol/man/figures/Thumbs.db |only munsellinterpol-3.0-0/munsellinterpol/vignettes/framed.sty |only munsellinterpol-3.0-0/munsellinterpol/vignettes/iso690-numeric-brackets-cs.csl |only munsellinterpol-3.1-0/munsellinterpol/DESCRIPTION | 13 munsellinterpol-3.1-0/munsellinterpol/MD5 | 73 munsellinterpol-3.1-0/munsellinterpol/NAMESPACE | 2 munsellinterpol-3.1-0/munsellinterpol/NEWS.md | 7 munsellinterpol-3.1-0/munsellinterpol/R/ColorDifference.R | 2 munsellinterpol-3.1-0/munsellinterpol/R/ISCC-NBS.R | 204 - munsellinterpol-3.1-0/munsellinterpol/R/MunsellName.R | 514 +-- munsellinterpol-3.1-0/munsellinterpol/R/MunsellToxyY.R | 566 +-- munsellinterpol-3.1-0/munsellinterpol/R/RGB.R | 260 - munsellinterpol-3.1-0/munsellinterpol/R/VandY.R | 266 - munsellinterpol-3.1-0/munsellinterpol/R/conversions.R | 988 +++--- munsellinterpol-3.1-0/munsellinterpol/R/events.R | 55 munsellinterpol-3.1-0/munsellinterpol/R/inversions.R | 446 +-- munsellinterpol-3.1-0/munsellinterpol/R/logger.R |only munsellinterpol-3.1-0/munsellinterpol/R/lookup.R | 962 +++--- munsellinterpol-3.1-0/munsellinterpol/R/optimals.R | 260 - munsellinterpol-3.1-0/munsellinterpol/R/plots.R | 1416 +++++----- munsellinterpol-3.1-0/munsellinterpol/R/reparam.R | 272 - munsellinterpol-3.1-0/munsellinterpol/R/spline.R | 602 ++-- munsellinterpol-3.1-0/munsellinterpol/R/utils.R | 264 - munsellinterpol-3.1-0/munsellinterpol/R/xyYtoMunsell.R | 922 +++--- munsellinterpol-3.1-0/munsellinterpol/R/zonohedron.R | 10 munsellinterpol-3.1-0/munsellinterpol/build/vignette.rds |binary munsellinterpol-3.1-0/munsellinterpol/inst/doc/dental.R | 2 munsellinterpol-3.1-0/munsellinterpol/inst/doc/dental.html | 377 +- munsellinterpol-3.1-0/munsellinterpol/inst/doc/lightness.pdf |binary munsellinterpol-3.1-0/munsellinterpol/inst/doc/lociHC.pdf |binary munsellinterpol-3.1-0/munsellinterpol/inst/doc/munsellinterpol-guide.R | 10 munsellinterpol-3.1-0/munsellinterpol/inst/doc/munsellinterpol-guide.Rmd | 43 munsellinterpol-3.1-0/munsellinterpol/inst/doc/munsellinterpol-guide.html | 1008 +++++-- munsellinterpol-3.1-0/munsellinterpol/inst/extdata/PantoneCoY.txt | 3 munsellinterpol-3.1-0/munsellinterpol/man/HVCfromMunsellName.Rd | 9 munsellinterpol-3.1-0/munsellinterpol/man/plotLociHC.Rd | 2 munsellinterpol-3.1-0/munsellinterpol/man/xyYtoMunsell.Rd | 15 munsellinterpol-3.1-0/munsellinterpol/vignettes/bibliography.bib | 34 munsellinterpol-3.1-0/munsellinterpol/vignettes/munsellinterpol-guide.Rmd | 43 40 files changed, 5128 insertions(+), 4522 deletions(-)
More information about munsellinterpol at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-03-10 1.5.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-01-10 0.9.2
2022-10-30 0.9.1.5
2019-11-24 0.9.1.4
2018-04-10 0.9.1.3
2015-10-17 0.9.1.1
2015-09-22 0.9.1
2015-03-29 0.9
2015-01-01 0.8
2014-12-21 0.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-08-23 9.1.8