Title: A Tidy Implementation of Heatmap
Description: This is a tidy implementation for heatmap. At the
moment it is based on the (great) package 'ComplexHeatmap'. The goal
of this package is to interface a tidy data frame with this powerful
tool. Some of the advantages are: Row and/or columns colour
annotations are easy to integrate just specifying one parameter
(column names). Custom grouping of rows is easy to specify providing
a grouped tbl. For example: df %>% group_by(...). Labels size
adjusted by row and column total number. Default use of Brewer and
Viridis palettes.
Author: Stefano Mangiola [aut, cre],
Anthony Papenfuss [ctb]
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>
Diff between tidyHeatmap versions 1.11.4 dated 2025-01-26 and 1.11.6 dated 2025-02-07
DESCRIPTION | 6 MD5 | 37 R/utilities.R | 31 build/stage23.rdb |binary inst/doc/introduction.html | 36 man/figures/example_plot.png |binary tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/tests/annotated-heatmap-1.svg | 24 tests/testthat/_snaps/tests/annotated-heatmap-2.svg | 50 - tests/testthat/_snaps/tests/annotation-ordering.svg |only tests/testthat/_snaps/tests/grouped-annotated-heatmap-1.svg | 24 tests/testthat/_snaps/tests/grouped-annotated-heatmap-2.svg | 142 +-- tests/testthat/_snaps/tests/grouped-custom-color-both.svg | 142 +-- tests/testthat/_snaps/tests/legend.svg | 84 - tests/testthat/_snaps/tests/multi-type.svg | 566 ++++++------ tests/testthat/_snaps/tests/numeric-right.svg | 282 ++--- tests/testthat/_snaps/tests/show-heatmap-legend.svg | 142 +-- tests/testthat/_snaps/tests/size-annotation.svg | 84 - tests/testthat/_snaps/tests/tile-colorramp2-palette.svg | 76 - tests/testthat/tests.R | 60 + 20 files changed, 923 insertions(+), 863 deletions(-)
Title: Optimal Dose Escalation Using Deep Reinforcement Learning
Description: An implementation to compute an optimal dose escalation rule
using deep reinforcement learning in phase I oncology trials
(Matsuura et al. (2023) <doi:10.1080/10543406.2023.2170402>).
The dose escalation rule can directly optimize the percentages of correct
selection (PCS) of the maximum tolerated dose (MTD).
Author: Kentaro Matsuura [aut, cre, cph]
Maintainer: Kentaro Matsuura <matsuurakentaro55@gmail.com>
Diff between RLescalation versions 1.0.1 dated 2025-01-09 and 1.0.2 dated 2025-02-07
DESCRIPTION | 6 - MD5 | 19 +-- R/compute_rl_scenarios.R | 19 ++- README.md | 9 - inst/WORDLIST | 2 inst/doc/RLescalation.R | 228 ++++++++++++++++++++++---------------------- inst/doc/RLescalation.Rmd | 4 inst/doc/RLescalation.html | 12 +- man/compute_rl_scenarios.Rd | 8 + man/figures |only vignettes/RLescalation.Rmd | 4 11 files changed, 164 insertions(+), 147 deletions(-)
Title: An 'openrouteservice' API Client
Description: The client streamlines access to the services provided by <https://api.openrouteservice.org>.
It allows you to painlessly query for directions, isochrones, time-distance matrices, geocoding, elevation, points of interest, and more.
Author: Heidelberg Institute for Geoinformation Technology gGmbH [cph],
Andrzej K. Oles [aut, cre]
Maintainer: Andrzej K. Oles <andrzej.oles@gmail.com>
Diff between openrouteservice versions 0.6.1 dated 2024-10-21 and 0.6.2 dated 2025-02-07
DESCRIPTION | 6 ++-- MD5 | 42 ++++++++++++++--------------- R/api_key.R | 13 ++++----- R/directions.R | 12 +++++--- R/elevation.R | 12 +++++--- R/geocode.R | 8 ++++- R/isochrones.R | 8 ++++- R/matrix.R | 8 ++++- R/optimization.R | 8 ++++- R/pois.R | 8 ++++- R/snap.R | 8 ++++- R/utils.R | 4 ++ inst/doc/openrouteservice.R | 12 ++++---- inst/doc/openrouteservice.html | 59 ++++++++++++++++++++--------------------- man/ors_directions.Rd | 12 +++++--- man/ors_elevation.Rd | 12 +++++--- man/ors_geocode.Rd | 8 ++++- man/ors_isochrones.Rd | 8 ++++- man/ors_matrix.Rd | 8 ++++- man/ors_optimization.Rd | 8 ++++- man/ors_pois.Rd | 8 ++++- man/ors_snap.Rd | 8 ++++- 22 files changed, 175 insertions(+), 105 deletions(-)
More information about openrouteservice at CRAN
Permanent link
Title: User-Friendly R Interface to Biologic Web Services' API
Description: Currently fully supports Enrichr, JASPAR, miEAA, PANTHER,
Reactome, STRING, and UniProt! The goal of rbioapi is to provide a
user-friendly and consistent interface to biological databases and
services. In a way that insulates the user from the technicalities of
using web services API and creates a unified and easy-to-use interface
to biological and medical web services. This is an ongoing project; New
databases and services will be added periodically. Feel free to
suggest any databases or services you often use.
Author: Moosa Rezwani [aut, cre]
Maintainer: Moosa Rezwani <moosa.rezwani@gmail.com>
Diff between rbioapi versions 0.8.1 dated 2024-03-30 and 0.8.2 dated 2025-02-07
rbioapi-0.8.1/rbioapi/man/rba_uniprot_coordinates_sequence.Rd |only rbioapi-0.8.2/rbioapi/DESCRIPTION | 8 rbioapi-0.8.2/rbioapi/MD5 | 271 - rbioapi-0.8.2/rbioapi/NAMESPACE | 16 rbioapi-0.8.2/rbioapi/NEWS.md | 41 rbioapi-0.8.2/rbioapi/R/deprecated_functions.R |only rbioapi-0.8.2/rbioapi/R/enrichr.R | 925 +++- rbioapi-0.8.2/rbioapi/R/helper_functions.R | 275 - rbioapi-0.8.2/rbioapi/R/internal_functions.R | 1593 ++++--- rbioapi-0.8.2/rbioapi/R/jaspar.R | 962 ++-- rbioapi-0.8.2/rbioapi/R/mieaa.R | 645 +-- rbioapi-0.8.2/rbioapi/R/panther.R | 901 ++-- rbioapi-0.8.2/rbioapi/R/reactome_analysis.R | 956 ++-- rbioapi-0.8.2/rbioapi/R/reactome_content.R | 1829 ++++---- rbioapi-0.8.2/rbioapi/R/stringdb.R | 1096 +++-- rbioapi-0.8.2/rbioapi/R/uniprot_coordinates.R | 453 +- rbioapi-0.8.2/rbioapi/R/uniprot_proteins.R | 2068 ++++------ rbioapi-0.8.2/rbioapi/R/uniprot_proteomes.R | 328 - rbioapi-0.8.2/rbioapi/R/uniprot_proteomics.R |only rbioapi-0.8.2/rbioapi/R/uniprot_taxonomy.R | 387 + rbioapi-0.8.2/rbioapi/R/uniprot_uniparc.R | 463 -- rbioapi-0.8.2/rbioapi/R/zzz.R | 61 rbioapi-0.8.2/rbioapi/build/partial.rdb |only rbioapi-0.8.2/rbioapi/build/vignette.rds |binary rbioapi-0.8.2/rbioapi/inst/doc/rbioapi.R | 93 rbioapi-0.8.2/rbioapi/inst/doc/rbioapi.Rmd | 120 rbioapi-0.8.2/rbioapi/inst/doc/rbioapi.html | 285 - rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_do_enrich.R | 298 - rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_do_enrich.Rmd | 361 + rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_do_enrich.html | 567 +- rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_enrichr.R | 142 rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_enrichr.Rmd | 170 rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_enrichr.html | 205 rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_jaspar.R | 128 rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_jaspar.Rmd | 99 rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_jaspar.html | 257 - rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_mieaa.R | 118 rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_mieaa.Rmd | 111 rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_mieaa.html | 224 - rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_panther.R | 109 rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_panther.Rmd | 162 rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_panther.html | 223 - rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_reactome.R | 109 rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_reactome.Rmd | 142 rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_reactome.html | 587 +- rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_string.R | 206 rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_string.Rmd | 244 - rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_string.html | 358 + rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_uniprot.R | 61 rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_uniprot.Rmd | 158 rbioapi-0.8.2/rbioapi/inst/doc/rbioapi_uniprot.html | 467 +- rbioapi-0.8.2/rbioapi/man/rba_enrichr.Rd | 47 rbioapi-0.8.2/rbioapi/man/rba_enrichr_add_background.Rd |only rbioapi-0.8.2/rbioapi/man/rba_enrichr_add_list.Rd | 47 rbioapi-0.8.2/rbioapi/man/rba_enrichr_enrich.Rd | 49 rbioapi-0.8.2/rbioapi/man/rba_enrichr_gene_map.Rd | 9 rbioapi-0.8.2/rbioapi/man/rba_enrichr_libs.Rd | 35 rbioapi-0.8.2/rbioapi/man/rba_enrichr_view_list.Rd | 20 rbioapi-0.8.2/rbioapi/man/rba_mieaa_enrich.Rd | 8 rbioapi-0.8.2/rbioapi/man/rba_options.Rd | 2 rbioapi-0.8.2/rbioapi/man/rba_panther_enrich.Rd | 120 rbioapi-0.8.2/rbioapi/man/rba_panther_tree_grafter.Rd | 17 rbioapi-0.8.2/rbioapi/man/rba_reactome_analysis.Rd | 8 rbioapi-0.8.2/rbioapi/man/rba_reactome_analysis_download.Rd | 4 rbioapi-0.8.2/rbioapi/man/rba_reactome_complex_subunits.Rd | 4 rbioapi-0.8.2/rbioapi/man/rba_string_annotations.Rd | 6 rbioapi-0.8.2/rbioapi/man/rba_string_enrichment.Rd | 20 rbioapi-0.8.2/rbioapi/man/rba_string_enrichment_image.Rd |only rbioapi-0.8.2/rbioapi/man/rba_string_enrichment_ppi.Rd | 1 rbioapi-0.8.2/rbioapi/man/rba_string_homology_inter.Rd | 3 rbioapi-0.8.2/rbioapi/man/rba_string_homology_intra.Rd | 3 rbioapi-0.8.2/rbioapi/man/rba_string_interaction_partners.Rd | 1 rbioapi-0.8.2/rbioapi/man/rba_string_interactions_network.Rd | 1 rbioapi-0.8.2/rbioapi/man/rba_string_map_ids.Rd | 1 rbioapi-0.8.2/rbioapi/man/rba_string_network_image.Rd | 1 rbioapi-0.8.2/rbioapi/man/rba_string_version.Rd | 1 rbioapi-0.8.2/rbioapi/man/rba_uniprot_antigens.Rd | 6 rbioapi-0.8.2/rbioapi/man/rba_uniprot_antigens_search.Rd | 6 rbioapi-0.8.2/rbioapi/man/rba_uniprot_coordinates.Rd | 11 rbioapi-0.8.2/rbioapi/man/rba_uniprot_coordinates_location.Rd | 11 rbioapi-0.8.2/rbioapi/man/rba_uniprot_coordinates_location_genome.Rd |only rbioapi-0.8.2/rbioapi/man/rba_uniprot_coordinates_location_protein.Rd |only rbioapi-0.8.2/rbioapi/man/rba_uniprot_coordinates_search.Rd | 9 rbioapi-0.8.2/rbioapi/man/rba_uniprot_epitope.Rd |only rbioapi-0.8.2/rbioapi/man/rba_uniprot_epitope_search.Rd |only rbioapi-0.8.2/rbioapi/man/rba_uniprot_features.Rd | 17 rbioapi-0.8.2/rbioapi/man/rba_uniprot_features_search.Rd | 19 rbioapi-0.8.2/rbioapi/man/rba_uniprot_genecentric.Rd | 6 rbioapi-0.8.2/rbioapi/man/rba_uniprot_genecentric_search.Rd | 6 rbioapi-0.8.2/rbioapi/man/rba_uniprot_mutagenesis.Rd | 6 rbioapi-0.8.2/rbioapi/man/rba_uniprot_mutagenesis_search.Rd | 6 rbioapi-0.8.2/rbioapi/man/rba_uniprot_proteins.Rd | 6 rbioapi-0.8.2/rbioapi/man/rba_uniprot_proteins_crossref.Rd | 6 rbioapi-0.8.2/rbioapi/man/rba_uniprot_proteins_search.Rd | 6 rbioapi-0.8.2/rbioapi/man/rba_uniprot_proteomes.Rd | 6 rbioapi-0.8.2/rbioapi/man/rba_uniprot_proteomes_search.Rd | 6 rbioapi-0.8.2/rbioapi/man/rba_uniprot_proteomics.Rd | 117 rbioapi-0.8.2/rbioapi/man/rba_uniprot_proteomics_hpp.Rd |only rbioapi-0.8.2/rbioapi/man/rba_uniprot_proteomics_hpp_search.Rd |only rbioapi-0.8.2/rbioapi/man/rba_uniprot_proteomics_non_ptm.Rd |only rbioapi-0.8.2/rbioapi/man/rba_uniprot_proteomics_non_ptm_search.Rd |only rbioapi-0.8.2/rbioapi/man/rba_uniprot_proteomics_ptm.Rd |only rbioapi-0.8.2/rbioapi/man/rba_uniprot_proteomics_ptm_search.Rd |only rbioapi-0.8.2/rbioapi/man/rba_uniprot_proteomics_search.Rd | 217 - rbioapi-0.8.2/rbioapi/man/rba_uniprot_proteomics_species.Rd |only rbioapi-0.8.2/rbioapi/man/rba_uniprot_ptm.Rd | 129 rbioapi-0.8.2/rbioapi/man/rba_uniprot_ptm_search.Rd | 207 - rbioapi-0.8.2/rbioapi/man/rba_uniprot_rna_edit.Rd |only rbioapi-0.8.2/rbioapi/man/rba_uniprot_rna_edit_search.Rd |only rbioapi-0.8.2/rbioapi/man/rba_uniprot_taxonomy.Rd | 6 rbioapi-0.8.2/rbioapi/man/rba_uniprot_taxonomy_lca.Rd | 6 rbioapi-0.8.2/rbioapi/man/rba_uniprot_taxonomy_lineage.Rd | 7 rbioapi-0.8.2/rbioapi/man/rba_uniprot_taxonomy_name.Rd | 6 rbioapi-0.8.2/rbioapi/man/rba_uniprot_taxonomy_path.Rd | 6 rbioapi-0.8.2/rbioapi/man/rba_uniprot_taxonomy_relationship.Rd | 6 rbioapi-0.8.2/rbioapi/man/rba_uniprot_uniparc.Rd | 6 rbioapi-0.8.2/rbioapi/man/rba_uniprot_uniparc_bestguess.Rd | 6 rbioapi-0.8.2/rbioapi/man/rba_uniprot_uniparc_search.Rd | 6 rbioapi-0.8.2/rbioapi/man/rba_uniprot_uniparc_sequence.Rd | 6 rbioapi-0.8.2/rbioapi/man/rba_uniprot_variation.Rd | 6 rbioapi-0.8.2/rbioapi/man/rba_uniprot_variation_search.Rd | 6 rbioapi-0.8.2/rbioapi/tests/testthat/helper_expects.R | 97 rbioapi-0.8.2/rbioapi/tests/testthat/test-api_calls_rba_httr.R | 38 rbioapi-0.8.2/rbioapi/tests/testthat/test-api_calls_rba_query.R | 55 rbioapi-0.8.2/rbioapi/tests/testthat/test-arguments_check_rba_args.R | 152 rbioapi-0.8.2/rbioapi/tests/testthat/test-arguments_check_rba_args_cond.R | 43 rbioapi-0.8.2/rbioapi/tests/testthat/test-arguments_check_rba_args_cons_chk.R | 96 rbioapi-0.8.2/rbioapi/tests/testthat/test-arguments_check_rba_args_cons_msg.R | 41 rbioapi-0.8.2/rbioapi/tests/testthat/test-arguments_check_rba_args_cons_wrp.R | 74 rbioapi-0.8.2/rbioapi/tests/testthat/test-arguments_check_rba_args_opts.R | 15 rbioapi-0.8.2/rbioapi/tests/testthat/test-data_containers.R | 19 rbioapi-0.8.2/rbioapi/tests/testthat/test-elper_functions.R | 43 rbioapi-0.8.2/rbioapi/tests/testthat/test-internet_connectivity.R | 19 rbioapi-0.8.2/rbioapi/tests/testthat/test-misc_msg.R | 13 rbioapi-0.8.2/rbioapi/tests/testthat/test-misc_paste2.R | 51 rbioapi-0.8.2/rbioapi/tests/testthat/test-misc_rba_ext_args.R | 9 rbioapi-0.8.2/rbioapi/tests/testthat/test-misc_rba_file.R | 119 rbioapi-0.8.2/rbioapi/vignettes/rbioapi.Rmd | 120 rbioapi-0.8.2/rbioapi/vignettes/rbioapi_do_enrich.Rmd | 361 + rbioapi-0.8.2/rbioapi/vignettes/rbioapi_enrichr.Rmd | 170 rbioapi-0.8.2/rbioapi/vignettes/rbioapi_jaspar.Rmd | 99 rbioapi-0.8.2/rbioapi/vignettes/rbioapi_mieaa.Rmd | 111 rbioapi-0.8.2/rbioapi/vignettes/rbioapi_panther.Rmd | 162 rbioapi-0.8.2/rbioapi/vignettes/rbioapi_reactome.Rmd | 142 rbioapi-0.8.2/rbioapi/vignettes/rbioapi_string.Rmd | 244 - rbioapi-0.8.2/rbioapi/vignettes/rbioapi_uniprot.Rmd | 158 146 files changed, 13284 insertions(+), 9733 deletions(-)
Title: American Soccer Analysis API Client
Description: Provides a wrapper around the same API <https://app.americansocceranalysis.com/api/v1/__docs__/>
that powers the American Soccer Analysis app.
Author: Tyler Richardett [aut, cre],
American Soccer Analysis [cph]
Maintainer: Tyler Richardett <tyler.richardett@gmail.com>
Diff between itscalledsoccer versions 0.3.0 dated 2024-09-04 and 0.3.1 dated 2025-02-07
itscalledsoccer-0.3.0/itscalledsoccer/tests/testthat/helpers.R |only itscalledsoccer-0.3.1/itscalledsoccer/DESCRIPTION | 12 itscalledsoccer-0.3.1/itscalledsoccer/MD5 | 24 - itscalledsoccer-0.3.1/itscalledsoccer/NEWS.md | 7 itscalledsoccer-0.3.1/itscalledsoccer/R/entities.R | 15 itscalledsoccer-0.3.1/itscalledsoccer/R/utils.R | 6 itscalledsoccer-0.3.1/itscalledsoccer/README.md | 1 itscalledsoccer-0.3.1/itscalledsoccer/tests/testthat/helper.R |only itscalledsoccer-0.3.1/itscalledsoccer/tests/testthat/test_entities.R | 206 ++++----- itscalledsoccer-0.3.1/itscalledsoccer/tests/testthat/test_init.R | 2 itscalledsoccer-0.3.1/itscalledsoccer/tests/testthat/test_stats_goals_added.R | 210 +++++----- itscalledsoccer-0.3.1/itscalledsoccer/tests/testthat/test_stats_salaries.R | 88 ++-- itscalledsoccer-0.3.1/itscalledsoccer/tests/testthat/test_stats_xgoals.R | 188 ++++---- itscalledsoccer-0.3.1/itscalledsoccer/tests/testthat/test_stats_xpass.R | 108 ++--- 14 files changed, 436 insertions(+), 431 deletions(-)
More information about itscalledsoccer at CRAN
Permanent link
Title: Project Environments
Description: A dependency management toolkit for R. Using 'renv', you can create
and manage project-local R libraries, save the state of these libraries to
a 'lockfile', and later restore your library as required. Together, these
tools can help make your projects more isolated, portable, and reproducible.
Author: Kevin Ushey [aut, cre] ,
Hadley Wickham [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between renv versions 1.1.0 dated 2025-01-29 and 1.1.1 dated 2025-02-07
renv-1.1.0/renv/inst/repos/src/contrib/renv_1.1.0.tar.gz |only renv-1.1.1/renv/DESCRIPTION | 6 - renv-1.1.1/renv/MD5 | 52 +++++++-------- renv-1.1.1/renv/NEWS.md | 7 ++ renv-1.1.1/renv/R/ansify.R | 4 - renv-1.1.1/renv/R/mask.R | 15 ++++ renv-1.1.1/renv/R/parallel.R | 15 ++-- renv-1.1.1/renv/build/vignette.rds |binary renv-1.1.1/renv/inst/doc/ci.html | 3 renv-1.1.1/renv/inst/doc/docker.html | 2 renv-1.1.1/renv/inst/doc/faq.html | 3 renv-1.1.1/renv/inst/doc/package-install.html | 5 - renv-1.1.1/renv/inst/doc/package-sources.html | 3 renv-1.1.1/renv/inst/doc/packrat.html | 3 renv-1.1.1/renv/inst/doc/profiles.html | 3 renv-1.1.1/renv/inst/doc/renv.html | 8 +- renv-1.1.1/renv/inst/doc/rsconnect.html | 2 renv-1.1.1/renv/inst/ext/renv.c | 5 + renv-1.1.1/renv/inst/repos/src/contrib/PACKAGES | 4 - renv-1.1.1/renv/inst/repos/src/contrib/PACKAGES.gz |binary renv-1.1.1/renv/inst/repos/src/contrib/PACKAGES.rds |binary renv-1.1.1/renv/inst/repos/src/contrib/renv_1.1.1.tar.gz |only renv-1.1.1/renv/inst/resources/activate.R | 4 - renv-1.1.1/renv/tests/testthat/test-init.R | 9 +- renv-1.1.1/renv/tests/testthat/test-install.R | 13 +++ renv-1.1.1/renv/tests/testthat/test-remotes.R | 1 renv-1.1.1/renv/tests/testthat/test-snapshot.R | 21 +++--- renv-1.1.1/renv/tests/testthat/test-update.R | 28 ++++++++ 28 files changed, 147 insertions(+), 69 deletions(-)
Title: Graphical User Interface for Data Quality Assessment
Description: A graphical user interface (GUI) to the functions implemented
in the R package 'DQAstats'. Publication: Mang et al. (2021)
<doi:10.1186/s12911-022-01961-z>.
Author: Lorenz A. Kapsner [cre, aut] ,
Jonathan M. Mang [aut] ,
Helene Koester [ctb],
MIRACUM - Medical Informatics in Research and Care in University
Medicine [fnd],
Universitaetsklinikum Erlangen [cph]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between DQAgui versions 0.2.5 dated 2024-11-28 and 0.2.6 dated 2025-02-07
DESCRIPTION | 11 MD5 | 46 R/app_utils.R | 1820 ++++++++-------- R/custom_buttons.R | 234 +- R/dot_helper.R | 52 R/launch_app.R | 15 R/moduleAtempPlausibility.R | 876 +++---- R/moduleCompleteness.R | 184 - R/moduleConfig.R | 4220 +++++++++++++++++++------------------- R/moduleDashboard.R | 1454 ++++++------- R/moduleDescriptive.R | 906 ++++---- R/moduleDifferences.R | 476 ++-- R/moduleLog.R | 470 ++-- R/moduleMDR.R | 186 - R/moduleReport.R | 408 +-- R/moduleUniquePlausibility.R | 354 +-- inst/application/global.R | 2 inst/application/server.R | 8 inst/application/ui.R | 344 +-- man/launch_app.Rd | 9 tests/testthat/_snaps/shinyapp.md | 2688 ++++++++++++------------ tests/testthat/apps/dqagui/app.R | 3 tests/testthat/test-lints.R | 66 tests/testthat/test-shinyapp.R | 230 +- 24 files changed, 7514 insertions(+), 7548 deletions(-)
Title: Monthly Climate Data for Germany, Usable for Heating and Cooling
Calculations
Description: This data package contains monthly climate data in Germany, it can be used for heating and
cooling calculations (external temperature, heating / cooling days, solar radiation).
Author: Tobias Loga [aut] ,
Guillaume Behem [aut],
Jens Calisti [cre]
Maintainer: Jens Calisti <jens@tangled.de>
Diff between clidamonger versions 1.2.0 dated 2024-06-28 and 1.3.0 dated 2025-02-07
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ README.md | 4 ++-- data/data.sol.rda |binary data/data.ta.hd.rda |binary data/list.station.ta.rda |binary man/data.sol.Rd | 2 +- man/data.ta.hd.Rd | 2 +- 9 files changed, 20 insertions(+), 16 deletions(-)
Title: Statistical Framework for in Vivo Drug Combination Studies
Description: A framework for evaluating drug combination effects in preclinical in vivo studies.
'SynergyLMM' provides functions to analyze longitudinal tumor growth experiments using linear mixed-effects models,
perform time-dependent analyses of synergy and antagonism, evaluate model diagnostics and performance,
and assess both post-hoc and a priori statistical power.
The calculation of drug combination synergy follows the statistical framework provided by Demidenko and Miller (2019, <doi:10.1371/journal.pone.0224137>).
The implementation and analysis of linear mixed-effect models is based on the methods described by Pinheiro and Bates (2000, <doi:10.1007/b98882>),
and Gałecki and Burzykowski (2013, <doi:10.1007/978-1-4614-3900-4>).
Author: Rafael Romero-Becerra [aut, cre]
,
Zhi Zhao [ctb],
Tero Aittokallio [ctb]
Maintainer: Rafael Romero-Becerra <r.r.becerra@medisin.uio.no>
Diff between SynergyLMM versions 1.0.0 dated 2025-02-06 and 1.0.1 dated 2025-02-07
DESCRIPTION | 8 - MD5 | 12 +- NEWS.md | 4 inst/doc/SynergyLMM.R | 3 inst/doc/SynergyLMM.Rmd | 7 - inst/doc/SynergyLMM.html | 196 ++++++++++++++++++++++------------------------- vignettes/SynergyLMM.Rmd | 7 - 7 files changed, 111 insertions(+), 126 deletions(-)
Title: Stepwise Regression Analysis
Description: Stepwise regression is a statistical technique used for model selection. This package streamlines stepwise regression analysis by supporting multiple regression types, incorporating popular selection strategies, and offering essential metrics. It enables users to apply multiple selection strategies and metrics in a single function call, visualize variable selection processes, and export results in various formats. However, StepReg should not be used for statistical inference unless the variable selection process is explicitly accounted for, as it can compromise the validity of the results. This limitation does not apply when StepReg is used for prediction purposes. We validated StepReg's accuracy using public datasets within the SAS software environment. Additionally, StepReg features an interactive Shiny application to enhance usability and accessibility.
Author: Junhui Li [cre] ,
Junhui Li [aut],
Kai Hu [aut],
Xiaohuan Lu [aut],
Kun Cheng [ctb],
Sushmita N Nayak [ctb],
Cesar Bautista Sotelo [ctb],
Michael A Lodato [ctb],
Wenxin Liu [aut],
Lihua Julie Zhu [aut]
Maintainer: Junhui Li <junhui.li11@umassmed.edu>
Diff between StepReg versions 1.5.7 dated 2025-01-22 and 1.5.8 dated 2025-02-07
DESCRIPTION | 12 +++----- MD5 | 14 ++++----- R/stepwise.R | 1 R/validateUtils.R | 14 ++++++--- inst/doc/StepReg.Rmd | 18 +++++++----- inst/doc/StepReg.html | 69 ++++++++++++++++++++++++------------------------- man/StepReg-package.Rd | 3 -- vignettes/StepReg.Rmd | 18 +++++++----- 8 files changed, 78 insertions(+), 71 deletions(-)
Title: Core Functions for Data Quality Assessment
Description: Perform data quality assessment ('DQA') of electronic health
records ('EHR'). Publication: Kapsner et al. (2021)
<doi:10.1055/s-0041-1733847>.
Author: Lorenz A. Kapsner [cre, aut] ,
Jonathan M. Mang [aut] ,
Helene Koester [ctb],
MIRACUM - Medical Informatics in Research and Care in University
Medicine [fnd],
Universitaetsklinikum Erlangen [cph]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between DQAstats versions 0.3.6 dated 2024-11-27 and 0.3.7 dated 2025-02-07
DESCRIPTION | 10 MD5 | 112 R/DQA.R | 33 R/calc_cat_stats.R | 234 - R/calc_counts.R | 316 +- R/calc_description.R | 162 - R/calc_stats.R | 576 +-- R/categorical_analysis.R | 104 R/completeness.R | 358 +- R/conformance.R | 1528 +++++----- R/count_uniques.R | 160 - R/create_pdf_report.R | 536 +-- R/dataloading.R | 2018 +++++++------- R/datamap.R | 392 +- R/datetime_restrictions.R | 1242 ++++---- R/descriptive_results.R | 580 ++-- R/difference_check.R | 420 +- R/etl.R | 372 +- R/export_results.R | 568 +-- R/extensive_summary.R | 112 R/format_value_conformance_results.R | 482 +-- R/get_key_col.R | 82 R/mdr.R | 3 R/plausibilities.R | 792 ++--- R/plausibility_results.R | 1434 ++++----- R/reduce_cat.R | 328 +- R/report.R | 682 ++-- R/simple_summary.R | 2 R/test_csv.R | 280 - R/time_compare.R | 566 +-- R/utils.R | 92 R/zzz.R | 8 inst/doc/DQAstats2SHIPdataset.R | 15 inst/doc/DQAstats2SHIPdataset.html | 55 inst/doc/DQAstats2SHIPdataset.qmd | 997 +++--- man/dqa.Rd | 12 tests/testthat.R | 20 tests/testthat/test-DQA.R | 5 tests/testthat/test-MDR.R | 1 tests/testthat/test-check_date_restriction_requirements.R | 1 tests/testthat/test-completeness.R | 1 tests/testthat/test-conformance.R | 1 tests/testthat/test-dataloading.R | 1 tests/testthat/test-datamap.R | 1 tests/testthat/test-datetime_restrictions.R | 1 tests/testthat/test-descriptive_results.R | 6 tests/testthat/test-etl_and_differences_checks.R | 1 tests/testthat/test-export.R | 1 tests/testthat/test-helper_vars.R | 1 tests/testthat/test-import.R | 1 tests/testthat/test-lints.R | 64 tests/testthat/test-plausibilities.R | 1 tests/testthat/test-readme.R | 39 tests/testthat/test-reduce_cat.R | 1 tests/testthat/test-render_conformance.R | 1 tests/testthat/test-time_compare.R | 1 vignettes/DQAstats2SHIPdataset.qmd | 997 +++--- 57 files changed, 8318 insertions(+), 8491 deletions(-)
Title: Detect Aberrant Behavior in Test Data
Description: Detect several types of aberrant behavior, including answer
copying, answer similarity, nonparametric misfit, parametric misfit,
preknowledge, rapid guessing, and test tampering.
Author: Kylie Gorney [aut, cph, cre] ,
Jiayi Deng [aut, cph]
Maintainer: Kylie Gorney <kgorney@msu.edu>
Diff between aberrance versions 0.1.1 dated 2024-07-02 and 0.2.0 dated 2025-02-07
DESCRIPTION | 6 MD5 | 52 +- NAMESPACE | 64 +-- NEWS.md | 10 R/aberrance-package.R | 56 +- R/compute.R | 19 R/detect-ac.R | 106 ----- R/detect-as.R | 875 +++++++++++++++++++------------------------- R/detect-nm.R | 722 ++++++++++++++++++------------------ R/detect-pk.R | 690 +++++++++++++++++------------------ R/detect-pm.R | 922 +++++++++++++++++++++++------------------------ R/detect-rg.R | 790 ++++++++++++++++++++-------------------- R/detect-tt.R | 13 R/est.R | 194 ++++----- R/irt.R | 276 +++++++------- R/sim.R | 626 +++++++++++++++---------------- R/utils.R | 86 ++-- inst/CITATION | 22 - man/aberrance-package.Rd | 56 +- man/detect_ac.Rd | 353 +++++++---------- man/detect_as.Rd | 546 ++++++++++++--------------- man/detect_nm.Rd | 380 +++++++++---------- man/detect_pk.Rd | 390 +++++++++---------- man/detect_pm.Rd | 494 ++++++++++++------------- man/detect_rg.Rd | 494 ++++++++++++------------- man/detect_tt.Rd | 414 ++++++++++----------- man/sim.Rd | 534 +++++++++++++-------------- 27 files changed, 4464 insertions(+), 4726 deletions(-)
Title: Vertical Profiles of Biological Signals in Weather Radar Data
Description: 'R' implementation of the 'vol2bird' software for generating vertical profiles
of birds and other biological signals in weather radar data. See Dokter et al.
(2011) <doi:10.1098/rsif.2010.0116> for a paper describing the methodology.
Author: Anders Henja [aut] ,
Adriaan M. Dokter [aut, cre] ,
Alexander Tedeschi [ctb] ,
Tsung-Yu Lin [ctb] ,
Subranshu Maji [ctb] ,
Daniel Sheldon [ctb] ,
Bart Kranstauber [ctb] ,
Jurriaan H. Spaaks [ctb] ,
Lourens Veen [ctb] ,
Iwan Holleman [ctb] ,
Hidde Lei [...truncated...]
Maintainer: Adriaan M. Dokter <vol2birdr@cornell.edu>
Diff between vol2birdR versions 1.0.5 dated 2024-09-27 and 1.0.6 dated 2025-02-07
DESCRIPTION | 8 MD5 | 24 - NEWS.md | 14 R/package.R | 8 R/vol2bird.R | 2 README.md | 3 build/partial.rdb |binary build/vignette.rds |binary configure | 805 +++++++++++++++++++++++++++++++---------------------- configure.ac | 36 ++ inst/COPYRIGHTS | 2 man/rsl2odim.Rd | 2 man/vol2bird.Rd | 2 13 files changed, 552 insertions(+), 354 deletions(-)
Title: Interface to the 'JWSACruncher' of 'JDemetra+'
Description: 'JDemetra+' (<https://github.com/jdemetra/jdemetra-app>) is the seasonal adjustment software officially recommended
to the members of the European Statistical System and the European System of Central Banks. Seasonal adjustment models performed
with 'JDemetra+' can be stored into workspaces. 'JWSACruncher' (<https://github.com/jdemetra/jwsacruncher/releases>) is a console tool that
re-estimates all the multi-processing defined in a workspace and to export the result. 'rjwsacruncher' allows to launch easily the 'JWSACruncher'.
Author: Alain Quartier-la-Tente [aut, cre]
,
Institut national de la statistique et des etudes economiques [cph]
Maintainer: Alain Quartier-la-Tente <alain.quartier@yahoo.fr>
Diff between rjwsacruncher versions 0.2.0 dated 2023-10-04 and 0.2.1 dated 2025-02-07
DESCRIPTION | 8 +- MD5 | 28 ++++---- NEWS.md | 10 +++ R/Cruncher.R | 71 +++++++++++----------- R/param_file.R | 74 +++++++++++++++++------ README.md | 23 ++++--- build/vignette.rds |binary inst/doc/run_jwsacruncher.R | 130 ++++++++++++++++++++++------------------- inst/doc/run_jwsacruncher.Rmd | 28 +++++--- inst/doc/run_jwsacruncher.html | 45 +++++++++++--- man/create_param_file.Rd | 24 ++++--- man/cruncher.Rd | 11 +++ man/default_param_file.Rd | 8 ++ man/list2param_file.Rd | 11 ++- vignettes/run_jwsacruncher.Rmd | 28 +++++--- 15 files changed, 319 insertions(+), 180 deletions(-)
Title: Concordance Correlation Coefficient for Repeated (and
Non-Repeated) Measures
Description: Estimates the Concordance Correlation Coefficient to assess agreement. The scenarios considered are non-repeated measures, non-longitudinal repeated measures (replicates) and longitudinal repeated measures. It also includes the estimation of the one-way intraclass correlation coefficient also known as reliability index. The estimation approaches implemented are variance components and U-statistics approaches. Description of methods can be found in Fleiss (1986) <doi:10.1002/9781118032923> and Carrasco et al. (2013) <doi:10.1016/j.cmpb.2012.09.002>.
Author: Josep Lluis Carrasco [aut, cre],
Gonzalo Peon Pena [aut]
Maintainer: Josep Lluis Carrasco <jlcarrasco@ub.edu>
Diff between cccrm versions 3.0.3 dated 2024-10-19 and 3.0.4 dated 2025-02-07
DESCRIPTION | 12 ++++++------ MD5 | 13 +++++++++---- NAMESPACE | 7 +++++++ R/ccc_est_by_time.R |only R/imports.R | 9 +++++---- R/lme_model.R | 2 ++ R/np_boot_ccc_by_time.R |only R/resamp_ccc_by_time.R |only man/ccc_est_by_time.Rd |only man/np_boot_ccc_by_time.Rd |only 10 files changed, 29 insertions(+), 14 deletions(-)
Title: Apply a Function to a Margin of an Array
Description: High performance variant of apply() for a fixed set of functions.
Considerable speedup of this implementation is a trade-off for universality: user defined
functions cannot be used with this package. However, about 20 most currently employed
functions are available for usage. They can be divided in three types:
reducing functions (like mean(), sum() etc., giving a scalar when applied to a vector),
mapping function (like normalise(), cumsum() etc., giving a vector of the same length
as the input vector) and finally, vector reducing function (like diff() which produces
result vector of a length different from the length of input vector).
Optional or mandatory additional arguments required by some functions
(e.g. norm type for norm()) can be
passed as named arguments in '...'.
Author: Serguei Sokol [aut, cre]
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between arrApply versions 2.2 dated 2023-01-10 and 2.2.1 dated 2025-02-07
DESCRIPTION | 19 ++++++++++------- MD5 | 14 ++++++------ NEWS | 6 +++++ R/RcppExports.R | 4 +-- man/arrApply.Rd | 2 - src/Makevars | 2 - src/arrApply.cpp | 34 ++++++++++++++++++++++++++++++ tests/testthat/test_arrApply.R | 45 +++++++++++++++++++++++++++-------------- 8 files changed, 91 insertions(+), 35 deletions(-)
Title: Lightweight Interfaces to the 'Ziggurat' Pseudo Random Number
Generator
Description: The 'Ziggurat' pseudo-random number generator (or PRNG),
introduced by Marsaglia and Tsang (2000, <doi:10.18637/jss.v005.i08>) and
further improved by Leong et al (2005, <doi:10.18637/jss.v012.i07>), offers
a lightweight and very fast PRNG for the normal, exponential, and uniform
distributions. It is provided here in a small zero-dependency package. It can
be used from R as well as from 'C/C++' code in other packages as is demonstrated
by four included sample packages using four distinct methods to use the PRNG
presented here in client package. The implementation is influenced by our
package 'RcppZiggurat' which offers a comparison among multiple alternative
implementations but presented here in a lighter-weight implementation that is
easier to use by other packages. The PRNGs provided are generally faster than
the ones in base R: on our machine, the relative gains for normal, exponential
and uniform are on the order of 7.4, 5.2 and 4.7 times faster than base R.
However, th [...truncated...]
Author: Dirk Eddelbuettel [aut, cre]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between zigg versions 0.0.1 dated 2025-01-31 and 0.0.2 dated 2025-02-07
ChangeLog |only DESCRIPTION | 10 ++++++---- MD5 | 8 +++++--- README.md | 6 +++++- build/partial.rdb |binary inst/NEWS.Rd |only 6 files changed, 16 insertions(+), 8 deletions(-)
Title: Reference Based Multiple Imputation
Description: Implements standard and reference based multiple imputation methods for continuous
longitudinal endpoints (Gower-Page et al. (2022) <doi:10.21105/joss.04251>). In particular,
this package supports deterministic conditional mean imputation and jackknifing as described
in Wolbers et al. (2022) <doi:10.1002/pst.2234>, Bayesian multiple imputation as described
in Carpenter et al. (2013) <doi:10.1080/10543406.2013.834911>, and bootstrapped maximum
likelihood imputation as described in von Hippel and Bartlett (2021) <doi: 10.1214/20-STS793>.
Author: Craig Gower-Page [aut, cre],
Alessandro Noci [aut],
Marcel Wolbers [ctb],
Isaac Gravestock [aut],
Daniel Sabanes Bove [aut],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Craig Gower-Page <craig.gower-page@roche.com>
Diff between rbmi versions 1.3.1 dated 2024-12-11 and 1.4.0 dated 2025-02-07
DESCRIPTION | 8 - MD5 | 66 ++++---- NAMESPACE | 1 NEWS.md | 17 ++ R/analyse.R | 6 R/controls.R |only R/draws.R | 27 ++- R/lsmeans.R | 21 +- R/mcmc.R | 69 ++++----- R/methods.R | 37 ++--- R/utilities.R | 76 +++++++++- inst/doc/CondMean_Inference.html | 5 inst/doc/advanced.html | 7 inst/doc/quickstart.html | 251 +++++++++++++++++----------------- inst/doc/stat_specs.html | 6 man/control.Rd |only man/extract_draws.Rd | 8 - man/format_method_descriptions.Rd |only man/method.Rd | 26 +-- man/rbmi-package.Rd | 1 man/rbmi-settings.Rd | 13 + tests/testthat/_snaps/print.md | 12 + tests/testthat/test-controls.R |only tests/testthat/test-draws.R | 2 tests/testthat/test-fullusage.R | 8 - tests/testthat/test-longData.R | 4 tests/testthat/test-lsmeans.R | 104 +++++++++++++- tests/testthat/test-mcmc.R | 105 +++++++++++--- tests/testthat/test-pool.R | 5 tests/testthat/test-print.R | 15 +- tests/testthat/test-reproducibility.R | 82 ++++++++++- tests/testthat/test-utilities.R | 35 ++++ vignettes/FAQ.html | 5 vignettes/quickstart.Rmd | 21 +- vignettes/retrieved_dropout.html | 5 vignettes/stat_specs.Rmd | 7 36 files changed, 739 insertions(+), 316 deletions(-)
Title: Lattice-Based Space-Filling Designs
Description: Lattice-based space-filling designs with fill or separation distance properties including
interleaved lattice-based minimax distance designs proposed in Xu He (2017)
<doi:10.1093/biomet/asx036>, interleaved lattice-based maximin distance designs proposed in
Xu He (2018) <doi:10.1093/biomet/asy069>, interleaved lattice-based designs with low fill and
high separation distance properties proposed in Xu He (2024) <doi:10.1137/23M156940X>,
rotated sphere packing designs proposed in Xu He (2017)
<doi:10.1080/01621459.2016.1222289>, sliced rotated sphere packing designs proposed in
Xu He (2019) <doi:10.1080/00401706.2018.1458655>,
and densest packing-based maximum projections designs proposed in Xu He (2021)
<doi:10.1093/biomet/asaa057> and Xu He (2018) <doi:10.48550/arXiv.1709.02062>.
Author: Xu He [aut, cre]
Maintainer: Xu He <hexu@amss.ac.cn>
Diff between LatticeDesign versions 2.0-5 dated 2022-11-13 and 3.0-1 dated 2025-02-07
LatticeDesign-2.0-5/LatticeDesign/R/InterleavedMaximinD.R |only LatticeDesign-3.0-1/LatticeDesign/DESCRIPTION | 26 +++--- LatticeDesign-3.0-1/LatticeDesign/MD5 | 30 ++++-- LatticeDesign-3.0-1/LatticeDesign/NAMESPACE | 1 LatticeDesign-3.0-1/LatticeDesign/R/DPMPD.r | 2 LatticeDesign-3.0-1/LatticeDesign/R/InterleavedFillSepD.r |only LatticeDesign-3.0-1/LatticeDesign/R/InterleavedMaximinD.r |only LatticeDesign-3.0-1/LatticeDesign/R/InterleavedMinimaxD.r | 43 ++++++---- LatticeDesign-3.0-1/LatticeDesign/data/CCs2.rda |only LatticeDesign-3.0-1/LatticeDesign/data/CCs3.rda |only LatticeDesign-3.0-1/LatticeDesign/data/CCs4.rda |only LatticeDesign-3.0-1/LatticeDesign/data/CCs5.rda |only LatticeDesign-3.0-1/LatticeDesign/data/CCs6.rda |only LatticeDesign-3.0-1/LatticeDesign/data/CCs7.rda |only LatticeDesign-3.0-1/LatticeDesign/data/CCs8.rda |only LatticeDesign-3.0-1/LatticeDesign/data/GMs8.rda |binary LatticeDesign-3.0-1/LatticeDesign/man/CCs.Rd |only LatticeDesign-3.0-1/LatticeDesign/man/DPMPD.Rd | 2 LatticeDesign-3.0-1/LatticeDesign/man/InterleavedFillSepD.Rd |only LatticeDesign-3.0-1/LatticeDesign/man/LRS.Rd | 4 LatticeDesign-3.0-1/LatticeDesign/man/LatticeDesign-package.Rd | 17 ++- LatticeDesign-3.0-1/LatticeDesign/man/ProjSepD.Rd | 2 22 files changed, 78 insertions(+), 49 deletions(-)
Title: Filtering, Visualization and Analysis of Eye Tracking Data
Description: Functions for analysing eye tracking data, including event detection (I-VT, I-DT and two means clustering),
visualizations and area of interest (AOI) based analyses. See separate documentation for each function. The principles underlying I-VT and I-DT filters are described in
Salvucci & Goldberg (2000,\doi{10.1145/355017.355028}). Two-means clustering is described in Hessels et al. (2017, \doi{10.3758/s13428-016-0822-1}).
Author: Johan Lundin Kleberg [aut, cre]
Maintainer: Johan Lundin Kleberg <johan.lundin.kleberg@su.se>
Diff between kollaR versions 1.0.2 dated 2025-02-07 and 1.0.3 dated 2025-02-07
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/VisualizationFunctions.R | 24 +++++++++++++----------- 3 files changed, 18 insertions(+), 16 deletions(-)
Title: Generic Implementation of a PK/PD Model
Description: A generic, easy-to-use and expandable implementation of a
pharmacokinetic (PK) / pharmacodynamic (PD) model based on the S4
class system. This package allows the user to read/write a
pharmacometric model from/to files and adapt it further on the fly in
the R environment. For this purpose, this package provides an
intuitive API to add, modify or delete equations, ordinary
differential equations (ODE's), model parameters or compartment
properties (like infusion duration or rate, bioavailability and
initial values). Finally, this package also provides a useful export
of the model for use with simulation packages 'rxode2' and 'mrgsolve'.
This package is designed and intended to be used with package
'campsis', a PK/PD simulation platform built on top of 'rxode2' and
'mrgsolve'.
Author: Nicolas Luyckx [aut, cre]
Maintainer: Nicolas Luyckx <nicolas.luyckx@calvagone.com>
Diff between campsismod versions 1.1.2 dated 2024-11-26 and 1.2.0 dated 2025-02-07
DESCRIPTION | 17 MD5 | 143 +++++-- NAMESPACE | 369 +++++++++++--------- NEWS.md | 20 + R/campsis_model.R | 72 +++ R/check.R | 28 - R/code_records.R | 53 ++ R/compartment_property.R | 2 R/generic.R | 89 ++++ R/global.R | 6 R/model_add_suffix.R | 10 R/model_parser.R | 2 R/omega_block.R |only R/omega_blocks.R |only R/parameter.R | 34 + R/parameter_uncertainty_utils.R |only R/parameters.R | 150 +++++++- R/replicated_campsis_model.R |only R/replication_settings.R |only R/rxode_conversion.R | 16 R/special_operators.R | 7 build/vignette.rds |binary data/model_suite.rda |binary inst/doc/v01_model_creation.R | 20 - inst/doc/v03_model_adaptation.R | 10 inst/doc/v04_compartment_properties.R | 14 inst/doc/v05_parameters.html | 24 - inst/doc/v06_append_pd_model.R | 20 - man/AutoReplicationSettings.Rd |only man/CampsisModel.Rd | 6 man/ManualReplicationSettings.Rd |only man/Omega.Rd | 6 man/OmegaBlock.Rd |only man/OmegaBlocks.Rd |only man/Sigma.Rd | 6 man/Theta.Rd | 6 man/add.Rd | 12 man/addRSE.Rd |only man/appendModel.Rd | 2 man/auto_replication_settings-class.Rd |only man/campsis_model-class.Rd | 4 man/checkMatrixIsPositiveDefinite.Rd |only man/colon-equals.Rd |only man/export.Rd | 9 man/extractModelParametersFromNames.Rd |only man/flagSampledParameterRows.Rd |only man/getMappingMatrix.Rd |only man/getName.Rd | 6 man/getOmegaBlock.Rd |only man/getOmegaIndexes.Rd |only man/getPrefix.Rd | 2 man/hasOffDiagonalOmegas.Rd |only man/isBlockFixed.Rd |only man/isMatrixPositiveDefinite.Rd |only man/length.Rd | 12 man/manual_replication_settings-class.Rd |only man/minMaxDefault.Rd |only man/move.Rd |only man/parameter-class.Rd | 4 man/parseIfStatement.Rd | 4 man/read.pmxmod.Rd | 6 man/replicate.Rd |only man/replicated_campsis_model-class.Rd |only man/replication_settings-class.Rd |only man/rxodeMatrix.Rd | 2 man/sampleFromInverseChiSquaredCore.Rd |only man/sampleFromInverseChiSquaredOrWishart.Rd |only man/sampleFromInverseWishartCore.Rd |only man/sampleFromMultivariateNormalDistribution.Rd |only man/sampleFromMultivariateNormalDistributionCore.Rd |only man/sampleGeneric.Rd |only man/setMinMax.Rd |only man/shiftOmegaIndexes.Rd |only man/sort.Rd | 6 man/standardise.Rd | 6 man/updateCompartments.Rd | 10 man/updateOMEGAs.Rd |only man/updateParameters.Rd |only man/writeParameters.Rd | 2 tests/testthat/testAddSuffix.R | 2 tests/testthat/testCampsisModel.R | 86 ++++ tests/testthat/testCodeRecords.R | 2 tests/testthat/testCompartments.R | 17 tests/testthat/testGenericList.R | 17 tests/testthat/testMiscellaneous.R |only tests/testthat/testParameter.R | 4 tests/testthat/testReadWrite.R | 20 + tests/testthat/testReplicatedCampsisModel.R |only tests/testthat/testUtilities.R | 2 tests/testthat/testWarnings.R | 4 tests/testthat/write/models/model_1cpt_fo_min_max |only 91 files changed, 987 insertions(+), 384 deletions(-)
Title: Steve's R Markdown Templates
Description: These are my collection of 'R Markdown' templates, mostly for compilation to PDF.
These are useful for all things academic and professional, if you are using 'R Markdown'
for things like your CV or your articles and manuscripts.
Author: Steven Miller [aut, cre]
Maintainer: Steven Miller <steve@svmiller.com>
Diff between stevetemplates versions 1.0.0 dated 2024-01-26 and 1.1.0 dated 2025-02-07
DESCRIPTION | 16 +- MD5 | 30 +++- NEWS.md | 9 + R/article3.R | 10 - R/cv2.R |only R/syllabus.R | 14 ++ R/syllabus2.R |only inst/rmarkdown/templates/article3/resources/template.tex | 94 +++++++-------- inst/rmarkdown/templates/beamer/resources/template.tex | 21 +++ inst/rmarkdown/templates/cv2 |only inst/rmarkdown/templates/syllabus/resources/template.tex | 8 + inst/rmarkdown/templates/syllabus2 |only inst/rmarkdown/templates/word/resources/template.docx |binary man/article3.Rd | 10 - man/cv2.Rd |only man/syllabus.Rd | 14 ++ man/syllabus2.Rd |only 17 files changed, 154 insertions(+), 72 deletions(-)
More information about stevetemplates at CRAN
Permanent link
Title: ODE Generation and Integration
Description: Generate systems of ordinary differential equations
(ODE) and integrate them, using a domain specific language
(DSL). The DSL uses R's syntax, but compiles to C in order to
efficiently solve the system. A solver is not provided, but
instead interfaces to the packages 'deSolve' and 'dde' are
generated. With these, while solving the differential equations,
no allocations are done and the calculations remain entirely in
compiled code. Alternatively, a model can be transpiled to R for
use in contexts where a C compiler is not present. After
compilation, models can be inspected to return information about
parameters and outputs, or intermediate values after calculations.
'odin' is not targeted at any particular domain and is suitable
for any system that can be expressed primarily as mathematical
expressions. Additional support is provided for working with
delays (delay differential equations, DDE), using interpolated
functions during interpolation, and for integrating quantities
that [...truncated...]
Author: Rich FitzJohn [aut, cre],
Thibaut Jombart [ctb],
Imperial College of Science, Technology and Medicine [cph]
Maintainer: Rich FitzJohn <rich.fitzjohn@gmail.com>
Diff between odin versions 1.2.6 dated 2024-09-23 and 1.2.7 dated 2025-02-07
DESCRIPTION | 6 MD5 | 12 build/vignette.rds |binary inst/doc/discrete.html | 850 +++++++++++++++++++++++++-------------------- inst/doc/functions.html | 562 +++++++++++++++++++---------- inst/doc/odin.html | 793 ++++++++++++++++++++++++----------------- tests/testthat/test-util.R | 16 7 files changed, 1341 insertions(+), 898 deletions(-)
Title: Penalized Regression Calibration (PRC) for the Dynamic
Prediction of Survival
Description: Computes penalized regression calibration (PRC), a
statistical method for the dynamic prediction of survival when many
longitudinal predictors are available. PRC is described in Signorelli
(2024) <doi:10.48550/arXiv.2309.15600> and in Signorelli et al. (2021)
<doi:10.1002/sim.9178>.
Author: Mirko Signorelli [aut, cre, cph]
,
Pietro Spitali [ctb],
Roula Tsonaka [ctb],
Barbara Vreede [ctb]
Maintainer: Mirko Signorelli <msignorelli.rpackages@gmail.com>
Diff between pencal versions 2.2.2 dated 2024-06-12 and 2.2.3 dated 2025-02-07
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- R/fit_mlpmms.R | 12 ++++++++---- R/fit_prcmlpmm.R | 4 ++++ R/summarize_mlpmms.R | 4 ++++ R/summary_mlpmmfit.R | 2 +- inst/NEWS.md | 12 ++++++++++++ inst/doc/vignette.pdf |binary man/fit_mlpmms.Rd | 12 ++++++++---- man/fit_prcmlpmm.Rd | 4 ++++ man/summarize_mlpmms.Rd | 4 ++++ man/summary.mlpmmfit.Rd | 2 +- 12 files changed, 60 insertions(+), 24 deletions(-)
Title: Tabular Data Suppression using Gaussian Elimination
Description: A statistical disclosure control tool to protect tables by suppression
using the Gaussian elimination secondary suppression algorithm
(Langsrud, 2024) <doi:10.1007/978-3-031-69651-0_6>. A suggestion is
to start by working with functions SuppressSmallCounts() and
SuppressDominantCells(). These functions use primary suppression functions for
the minimum frequency rule and the dominance rule, respectively. Novel
functionality for suppression of disclosive cells is also included. General
primary suppression functions can be supplied as input to the general working
horse function, GaussSuppressionFromData(). Suppressed frequencies can be
replaced by synthetic decimal numbers as described in
Langsrud (2019) <doi:10.1007/s11222-018-9848-9>.
Author: Oeyvind Langsrud [aut, cre] ,
Daniel Lupp [aut] ,
Hege Boevelstad [ctb] ,
Vidar Norstein Klungre [rev] ,
Statistics Norway [cph]
Maintainer: Oeyvind Langsrud <oyl@ssb.no>
Diff between GaussSuppression versions 0.9.2 dated 2024-12-09 and 0.9.5 dated 2025-02-07
GaussSuppression-0.9.2/GaussSuppression/R/Extend0fromHierarchies.R |only GaussSuppression-0.9.5/GaussSuppression/DESCRIPTION | 19 - GaussSuppression-0.9.5/GaussSuppression/MD5 | 53 +-- GaussSuppression-0.9.5/GaussSuppression/NAMESPACE | 7 GaussSuppression-0.9.5/GaussSuppression/NEWS.md | 17 GaussSuppression-0.9.5/GaussSuppression/R/GaussSuppressDec.R | 176 ++++++++-- GaussSuppression-0.9.5/GaussSuppression/R/GaussSuppressionFromData.R | 68 +-- GaussSuppression-0.9.5/GaussSuppression/R/GaussSuppressionTwoWay.R | 2 GaussSuppression-0.9.5/GaussSuppression/R/PrimaryFromRisky.R | 2 GaussSuppression-0.9.5/GaussSuppression/R/Singleton.R | 4 GaussSuppression-0.9.5/GaussSuppression/R/SuppressDominantCells.R | 19 - GaussSuppression-0.9.5/GaussSuppression/R/SuppressFewContributors.R | 4 GaussSuppression-0.9.5/GaussSuppression/R/SuppressSmallCounts.R | 26 + GaussSuppression-0.9.5/GaussSuppression/R/SuppressionFromDecimals.R | 58 ++- GaussSuppression-0.9.5/GaussSuppression/R/reexport.R | 4 GaussSuppression-0.9.5/GaussSuppression/inst/doc/Small_count_frequency_table_suppression.R | 22 - GaussSuppression-0.9.5/GaussSuppression/inst/doc/define_tables.Rmd | 4 GaussSuppression-0.9.5/GaussSuppression/inst/doc/define_tables.html | 2 GaussSuppression-0.9.5/GaussSuppression/man/GaussSuppressDec.Rd | 46 ++ GaussSuppression-0.9.5/GaussSuppression/man/GaussSuppressionTwoWay.Rd | 2 GaussSuppression-0.9.5/GaussSuppression/man/PrimaryFromRiskyDefault.Rd | 2 GaussSuppression-0.9.5/GaussSuppression/man/SingletonUniqueContributor.Rd | 4 GaussSuppression-0.9.5/GaussSuppression/man/SuppressDominantCells.Rd | 20 + GaussSuppression-0.9.5/GaussSuppression/man/SuppressFewContributors.Rd | 2 GaussSuppression-0.9.5/GaussSuppression/man/SuppressSmallCounts.Rd | 27 + GaussSuppression-0.9.5/GaussSuppression/man/SuppressionFromDecimals.Rd | 28 + GaussSuppression-0.9.5/GaussSuppression/man/reexports.Rd | 3 GaussSuppression-0.9.5/GaussSuppression/vignettes/define_tables.Rmd | 4 28 files changed, 452 insertions(+), 173 deletions(-)
More information about GaussSuppression at CRAN
Permanent link
Title: Data Structures and Functions for Working with Forest Data
Description: Provides generic data structures and algorithms for use with forest
mensuration data in a consistent framework. The functions and objects
included are a collection of broadly applicable tools. More specialized
applications should be implemented in separate packages that build on this
foundation. Documentation about 'ForestElementsR' is provided by three
vignettes included in this package. For an introduction to the field of
forest mensuration, refer to the textbooks by Kershaw et al. (2017)
<doi:10.1002/9781118902028>, and van Laar and Akca (2007)
<doi:10.1007/978-1-4020-5991-9>.
Author: Peter Biber [aut, cre, cph] ,
Astor Torano Caicoya [aut] ,
Torben Hilmers [ctb]
Maintainer: Peter Biber <p.biber@tum.de>
Diff between ForestElementsR versions 2.0.1 dated 2024-12-23 and 2.1.0 dated 2025-02-07
DESCRIPTION | 8 MD5 | 491 - NAMESPACE | 464 - NEWS.md | 46 R/age_d_gnfi3.R | 530 +- R/age_h_gnfi3.R | 520 +- R/assmann_layers.R | 134 R/crown_diameter_silva.R | 322 - R/d_age_gnfi3.R | 602 +- R/data_example_stands.R | 234 R/data_species_codings.R | 186 R/data_species_master_table.R | 102 R/data_yield_tables.R | 874 +-- R/data_yield_tables_for_species.R | 96 R/fe_ccircle_spatial.R | 1936 +++---- R/fe_ccircle_spatial_methods.R | 386 - R/fe_ccircle_spatial_notrees.R | 800 +-- R/fe_ccircle_spatial_notrees_methods.R | 220 R/fe_species_bavrn_state.R | 816 +-- R/fe_species_bavrn_state_short.R | 836 +-- R/fe_species_generic_methods.R | 428 - R/fe_species_ger_nfi_2012.R | 842 +-- R/fe_species_helper_functions.R | 844 +-- R/fe_species_master.R | 820 +-- R/fe_species_tum_wwk_long.R | 838 +-- R/fe_species_tum_wwk_short.R | 868 +-- R/fe_stand.R | 1208 ++-- R/fe_stand_helpers_construction.R | 602 +- R/fe_stand_helpers_validation.R | 590 +- R/fe_stand_methods.R | 336 - R/fe_stand_spatial.R | 1664 +++--- R/fe_tally_list.R | 640 +- R/fe_yield_table.R | 856 +-- R/fe_yield_table_methods.R | 1084 ++-- R/forestelementsr_package.R | 10 R/forestelementsr_vctrs.R | 12 R/get_area_ha.R | 162 R/growth_est_ytable.R | 476 - R/h_age_gnfi3.R | 568 +- R/h_q_from_d_q.R | 304 - R/h_standard_bv.R | 500 - R/h_standard_gnfi3.R | 618 +- R/height_crown_base_silva.R | 304 - R/n_rep_ha.R | 256 - R/plot.fe_yield_table.R | 158 R/se_tests.R | 264 - R/shannon_index.R | 196 R/species_profile.R | 254 - R/species_shares.R | 348 - R/stand_diameters_and_heights.R | 1206 ++-- R/stand_level_increment.R | 254 - R/stand_sums_dynamic.R | 464 - R/stand_sums_static.R | 348 - R/standing_area_gnfi3.R | 462 - R/survey_overview.R | 260 - R/utils-fe.R | 84 R/utils-pipe.R | 28 R/v_gri.R | 426 - R/v_red_harvest_ubark.R | 366 - README.md | 768 +-- build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 340 - inst/doc/forestelementsr_package.R | 624 +- inst/doc/forestelementsr_package.Rmd | 1712 +++--- inst/doc/forestelementsr_package.html | 5280 ++++++++++----------- inst/doc/tree_species_codings.R | 646 +- inst/doc/tree_species_codings.Rmd | 1726 +++--- inst/doc/tree_species_codings.html | 5052 ++++++++++---------- inst/doc/yield_tables.R | 330 - inst/doc/yield_tables.Rmd | 884 +-- inst/doc/yield_tables.html | 4222 ++++++++-------- man/ForestElementsR-vctrs.Rd | 18 man/age_d_gnfi3.Rd | 142 man/age_d_gnfi3_core.Rd | 88 man/age_h_gnfi3.Rd | 142 man/age_h_gnfi3_core.Rd | 88 man/all_codes_allowed.Rd | 52 man/as_fe_species_bavrn_state.Rd | 98 man/as_fe_species_bavrn_state_short.Rd | 98 man/as_fe_species_ger_nfi_2012.Rd | 104 man/as_fe_species_master.Rd | 106 man/as_fe_species_tum_wwk_long.Rd | 98 man/as_fe_species_tum_wwk_short.Rd | 104 man/assmann_layers.Rd | 88 man/check_order_of_magnitude.Rd | 46 man/check_trees_orders_of_magnitude.Rd | 46 man/crown_diameter_silva.Rd | 136 man/crown_diameter_silva_core.Rd | 68 man/d_100.Rd | 146 man/d_age_gnfi3.Rd | 140 man/d_age_gnfi3_core.Rd | 88 man/d_age_gnfi3_spec_convert.Rd | 36 man/d_dom_weise.Rd | 122 man/d_q.Rd | 118 man/example_data.Rd | 254 - man/fe_ccircle_spatial.Rd | 462 - man/fe_ccircle_spatial_notrees.Rd | 176 man/fe_species_bavrn_state.Rd | 116 man/fe_species_bavrn_state_short.Rd | 122 man/fe_species_ger_nfi_2012.Rd | 118 man/fe_species_get_coding.Rd | 44 man/fe_species_get_coding_table.Rd | 52 man/fe_species_master.Rd | 110 man/fe_species_tum_wwk_long.Rd | 118 man/fe_species_tum_wwk_short.Rd | 116 man/fe_stand.Rd | 384 - man/fe_stand_spatial.Rd | 458 - man/fe_tally_list.Rd | 150 man/fe_yield_table.Rd | 172 man/format.fe_species_bavrn_state.Rd | 100 man/format.fe_species_bavrn_state_short.Rd | 100 man/format.fe_species_ger_nfi_2012.Rd | 100 man/format.fe_species_master.Rd | 100 man/format.fe_species_tum_wwk_long.Rd | 100 man/format.fe_species_tum_wwk_short.Rd | 96 man/format_fe_species.Rd | 52 man/get_area_ha.Rd | 68 man/h_100.Rd | 162 man/h_age_gnfi3.Rd | 140 man/h_age_gnfi3_core.Rd | 88 man/h_age_gnfi3_spec_convert.Rd | 36 man/h_dom_weise.Rd | 148 man/h_q.Rd | 156 man/h_q_from_d_q.Rd | 158 man/h_q_from_d_q_core.Rd | 50 man/h_standard_bv.Rd | 146 man/h_standard_bv_core.Rd | 86 man/h_standard_gnfi3.Rd | 200 man/h_standard_gnfi3_core.Rd | 86 man/has_no_missing_values.Rd | 48 man/has_required_lengths.Rd | 52 man/has_required_names.Rd | 48 man/has_required_type_or_class.Rd | 46 man/has_required_types_or_classes.Rd | 52 man/height_crown_base_silva.Rd | 126 man/height_crown_base_silva_core.Rd | 68 man/hstd_gnfi3_spec_convert.Rd | 36 man/is_distinct.Rd | 50 man/is_fe_ccircle_spatial.Rd | 46 man/is_fe_ccircle_spatial_notrees.Rd | 46 man/is_fe_species_bavrn_state.Rd | 50 man/is_fe_species_bavrn_state_short.Rd | 50 man/is_fe_species_ger_nfi_2012.Rd | 50 man/is_fe_species_master.Rd | 50 man/is_fe_species_tum_wwk_long.Rd | 50 man/is_fe_species_tum_wwk_short.Rd | 50 man/is_fe_stand.Rd | 48 man/is_fe_stand_spatial.Rd | 46 man/is_fe_tally_list.Rd | 38 man/is_fe_yield_table.Rd | 52 man/make_trees_dataframe.Rd | 120 man/n_rep_ha.Rd | 90 man/new_fe_ccircle_spatial.Rd | 184 man/new_fe_ccircle_spatial_notrees.Rd | 150 man/new_fe_species.Rd | 48 man/new_fe_species_bavrn_state.Rd | 54 man/new_fe_species_bavrn_state_short.Rd | 56 man/new_fe_species_ger_nfi_2012.Rd | 54 man/new_fe_species_master.Rd | 54 man/new_fe_species_tum_wwk_long.Rd | 54 man/new_fe_species_tum_wwk_short.Rd | 54 man/new_fe_stand.Rd | 114 man/new_fe_stand_spatial.Rd | 140 man/new_fe_tally_list.Rd | 52 man/new_fe_yield_table.Rd | 64 man/pipe.Rd | 40 man/plot.fe_ccircle_spatial.Rd | 96 man/plot.fe_ccircle_spatial_notrees.Rd | 64 man/plot.fe_stand.Rd | 114 man/plot.fe_yield_table.Rd | 96 man/se_tests.Rd | 106 man/shannon_index.Rd | 124 man/si_to_mai_age.Rd | 124 man/si_to_mai_max.Rd | 116 man/site_index.Rd | 90 man/species_codings.Rd | 166 man/species_master_table.Rd | 80 man/species_profile.Rd | 166 man/species_shares.Rd | 148 man/stand_level_increment.Rd | 122 man/stand_sums_dynamic.Rd | 136 man/stand_sums_static.Rd | 149 man/standing_area_gnfi3.Rd | 94 man/standing_area_gnfi3_core.Rd | 66 man/stndg_area_gnfi3_spec_convert.Rd | 40 man/stocking_level.Rd | 140 man/summary.fe_ccircle_spatial_notrees.Rd | 66 man/summary.fe_species_bavrn_state.Rd | 116 man/summary.fe_species_bavrn_state_short.Rd | 116 man/summary.fe_species_ger_nfi_2012.Rd | 116 man/summary.fe_species_master.Rd | 122 man/summary.fe_species_tum_wwk_long.Rd | 112 man/summary.fe_species_tum_wwk_short.Rd | 120 man/summary.fe_stand.Rd | 166 man/summary_fe_species.Rd | 68 man/survey_overview.Rd | 110 man/translate_spec_codes_into_names.Rd | 56 man/v_gri.Rd | 171 man/v_gri_core.Rd | 66 man/v_red_harvest_ubark.Rd | 102 man/v_red_harvest_ubark_core.Rd | 74 man/validate_fe_ccircle_spatial.Rd | 74 man/validate_fe_ccircle_spatial_notrees.Rd | 64 man/validate_fe_species.Rd | 40 man/validate_fe_species_bavrn_state.Rd | 78 man/validate_fe_species_bavrn_state_short.Rd | 80 man/validate_fe_species_ger_nfi_2012.Rd | 80 man/validate_fe_species_master.Rd | 78 man/validate_fe_species_tum_wwk_long.Rd | 80 man/validate_fe_species_tum_wwk_short.Rd | 80 man/validate_fe_stand.Rd | 60 man/validate_fe_stand_spatial.Rd | 58 man/validate_fe_tally_list.Rd | 50 man/validate_fe_yield_table.Rd | 56 man/vec_ptype_abbr.fe_species_bavrn_state.Rd | 54 man/vec_ptype_abbr.fe_species_bavrn_state_short.Rd | 54 man/vec_ptype_abbr.fe_species_ger_nfi_2012.Rd | 54 man/vec_ptype_abbr.fe_species_master.Rd | 54 man/vec_ptype_abbr.fe_species_tum_wwk_long.Rd | 54 man/vec_ptype_abbr.fe_species_tum_wwk_short.Rd | 54 man/yield_tables.Rd | 918 +-- man/yield_tables_for_species.Rd | 98 man/ytable_age_slice.Rd | 118 man/ytable_lookup.Rd | 118 man/ytable_max_slice.Rd | 94 tests/testthat.R | 20 tests/testthat/test_crown_diameter_silva.R | 140 tests/testthat/test_fe_stand_object.R | 182 tests/testthat/test_fe_stand_spatial_object.R | 330 - tests/testthat/test_gnfi3_growth_functions.R | 1102 ++-- tests/testthat/test_h_q_from_d_q.R | 192 tests/testthat/test_h_standard_bv.R | 584 +- tests/testthat/test_h_standard_gnfi3.R | 724 +- tests/testthat/test_height_crown_base_silva.R | 146 tests/testthat/test_species_coding_casts.R | 246 tests/testthat/test_species_coding_consistency.R | 412 - tests/testthat/test_stand_diameters_and_heights.R | 370 - tests/testthat/test_stand_level_increment.R | 196 tests/testthat/test_stand_sums_static.R |only tests/testthat/test_standing_area_gnfi3.R | 470 - tests/testthat/test_v_red_harvest_ubark.R | 194 tests/testthat/test_volume_v_gri.R | 390 - vignettes/REFERENCES.bib | 524 +- vignettes/forestelementsr_package.Rmd | 1712 +++--- vignettes/tree_species_codings.Rmd | 1726 +++--- vignettes/yield_tables.Rmd | 884 +-- 247 files changed, 38872 insertions(+), 38799 deletions(-)
More information about ForestElementsR at CRAN
Permanent link
Title: Datasets and Functions for Books by Julian Faraway
Description: Books are "Linear Models with R" published 1st Ed. August 2004, 2nd Ed. July 2014, 3rd Ed. February 2025 by CRC press, ISBN 9781439887332, and "Extending the Linear Model with R" published by CRC press in 1st Ed. December 2005 and 2nd Ed. March 2016, ISBN 9781584884248 and "Practical Regression and ANOVA in R" contributed documentation on CRAN (now very dated).
Author: Julian Faraway [aut, cre]
Maintainer: Julian Faraway <jjf23@bath.ac.uk>
Diff between faraway versions 1.0.8 dated 2022-08-23 and 1.0.9 dated 2025-02-07
DESCRIPTION | 22 ++++++++----- MD5 | 29 +++++++++++------- NAMESPACE | 1 NEWS | 6 +++ R/faraway-package.R | 82 +++++++++++++++++++++++++++++++++++++++++----------- R/faraway.R | 29 ++++++++---------- README.md |only build/partial.rdb |binary data/kanga.rda |binary data/mba.rda |only data/solv.rda |only data/wfat.rda |only man/VarCorrmat.Rd |only man/debt.Rd | 2 - man/fat.Rd | 2 - man/happy.Rd | 8 ++++- man/kanga.Rd | 2 - man/solv.Rd |only man/wfat.Rd |only 19 files changed, 127 insertions(+), 56 deletions(-)
Title: Entropy Partitioning to Measure Diversity
Description: Measurement and partitioning of diversity, based on Tsallis entropy, following Marcon and Herault (2015) <doi:10.18637/jss.v067.i08>.
'entropart' provides functions to calculate alpha, beta and gamma diversity of communities, including phylogenetic and functional diversity.
Estimation-bias corrections are available.
Author: Eric Marcon [aut, cre] ,
Bruno Herault [aut]
Maintainer: Eric Marcon <eric.marcon@agroparistech.fr>
Diff between entropart versions 1.6-15 dated 2024-08-26 and 1.6-16 dated 2025-02-07
DESCRIPTION | 6 +++--- MD5 | 40 ++++++++++++++++++++-------------------- NEWS.md | 7 +++++++ R/Accumulation.R | 6 +++--- R/CommunityProfile.R | 6 +++--- R/DivPart.R | 4 ++-- R/DivProfile.R | 6 +++--- R/MCdiversity.R | 4 ++-- R/MCentropy.R | 4 ++-- R/PhyloValue.R | 6 +++--- R/SpeciesDistribution.R | 6 +++--- build/vignette.rds |binary inst/doc/entropart.html | 21 +++++++++++---------- man/Accumulation.Rd | 6 +++--- man/CommunityProfile.Rd | 6 +++--- man/DivPart.Rd | 4 ++-- man/DivProfile.Rd | 6 +++--- man/MCdiversity.Rd | 4 ++-- man/MCentropy.Rd | 4 ++-- man/PhyloValue.Rd | 6 +++--- man/SpeciesDistribution.Rd | 6 +++--- 21 files changed, 83 insertions(+), 75 deletions(-)
Title: High Level Encryption Wrappers
Description: Encryption wrappers, using low-level support from
'sodium' and 'openssl'. 'cyphr' tries to smooth over some pain
points when using encryption within applications and data analysis
by wrapping around differences in function names and arguments in
different encryption providing packages. It also provides
high-level wrappers for input/output functions for seamlessly
adding encryption to existing analyses.
Author: Rich FitzJohn [aut, cre],
Jai Ranganathan [ctb]
Maintainer: Rich FitzJohn <rich.fitzjohn@gmail.com>
Diff between cyphr versions 1.1.4 dated 2022-06-20 and 1.1.7 dated 2025-02-07
cyphr-1.1.4/cyphr/man/cyphr.Rd |only cyphr-1.1.7/cyphr/DESCRIPTION | 11 cyphr-1.1.7/cyphr/MD5 | 44 cyphr-1.1.7/cyphr/R/cyphr.R | 5 cyphr-1.1.7/cyphr/R/data.R | 5 cyphr-1.1.7/cyphr/README.md | 2 cyphr-1.1.7/cyphr/build/vignette.rds |binary cyphr-1.1.7/cyphr/inst/WORDLIST | 8 cyphr-1.1.7/cyphr/inst/doc/cyphr.R | 8 cyphr-1.1.7/cyphr/inst/doc/cyphr.html | 869 ++++++++++------ cyphr-1.1.7/cyphr/inst/doc/data.R | 4 cyphr-1.1.7/cyphr/inst/doc/data.html | 542 ++++++--- cyphr-1.1.7/cyphr/man/cyphr-package.Rd |only cyphr-1.1.7/cyphr/tests/testthat/test-encrypt-data.R | 8 cyphr-1.1.7/cyphr/tests/testthat/test-encrypt-wrapper.R | 2 cyphr-1.1.7/cyphr/tests/testthat/test-openssl.R | 84 - cyphr-1.1.7/cyphr/tests/testthat/test-reference.R | 2 cyphr-1.1.7/cyphr/tests/testthat/test-rewrite.R | 2 cyphr-1.1.7/cyphr/tests/testthat/test-session.R | 10 cyphr-1.1.7/cyphr/tests/testthat/test-sodium.R | 34 cyphr-1.1.7/cyphr/tests/testthat/test-ssh-keygen.R | 20 cyphr-1.1.7/cyphr/tests/testthat/test-util-assert.R | 2 cyphr-1.1.7/cyphr/tests/testthat/test-util.R | 39 cyphr-1.1.7/cyphr/tests/testthat/test-zzz-data.R | 115 +- 24 files changed, 1091 insertions(+), 725 deletions(-)
Title: Synthesize Data Based on Empirical Quantile Functions and Rank
Order Matching
Description: Data is synthesized using a combination of inverse transform
sampling using the empirical quantile functions for each variable, and
then copying the rank order structure from the original dataset. The
syntesizer method has a tunable parameter allowing to gradually move
from realistic and possibly unsafe synthetic data to decorrelated data
of less utility.
Author: Mark van der Loo [aut, cre]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between synthesizer versions 0.3.1 dated 2024-10-11 and 0.4.0 dated 2025-02-07
synthesizer-0.3.1/synthesizer/inst/tinytest/test_measures.R |only synthesizer-0.3.1/synthesizer/man/dcor.Rd |only synthesizer-0.3.1/synthesizer/man/dmean.Rd |only synthesizer-0.3.1/synthesizer/man/qa.Rd |only synthesizer-0.4.0/synthesizer/DESCRIPTION | 15 synthesizer-0.4.0/synthesizer/MD5 | 38 - synthesizer-0.4.0/synthesizer/NAMESPACE | 10 synthesizer-0.4.0/synthesizer/NEWS | 7 synthesizer-0.4.0/synthesizer/R/measures.R | 129 --- synthesizer-0.4.0/synthesizer/R/synthesizer.R | 156 +++- synthesizer-0.4.0/synthesizer/R/synthesizer_package.R | 2 synthesizer-0.4.0/synthesizer/build/vignette.rds |binary synthesizer-0.4.0/synthesizer/inst/doc/introduction.R | 29 synthesizer-0.4.0/synthesizer/inst/doc/introduction.html | 325 ++++++---- synthesizer-0.4.0/synthesizer/inst/doc/introduction.md | 147 +++- synthesizer-0.4.0/synthesizer/inst/tinytest/test_synthesizer.R | 13 synthesizer-0.4.0/synthesizer/man/make_synthesizer.Rd | 28 synthesizer-0.4.0/synthesizer/man/pmse.Rd | 6 synthesizer-0.4.0/synthesizer/man/synthesize.Rd | 34 - synthesizer-0.4.0/synthesizer/man/synthesizer-package.Rd | 2 synthesizer-0.4.0/synthesizer/vignettes/introduction.md | 147 +++- synthesizer-0.4.0/synthesizer/vignettes/style.css | 35 - 22 files changed, 685 insertions(+), 438 deletions(-)
Title: Paws Low-Level Amazon Web Services API
Description: Functions for making low-level API requests to Amazon Web Services
<https://aws.amazon.com>. The functions handle building, signing, and
sending requests, and receiving responses. They are designed to help build
higher-level interfaces to individual services, such as Simple Storage
Service (S3).
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.common versions 0.7.7 dated 2024-10-03 and 0.8.0 dated 2025-02-07
paws.common-0.7.7/paws.common/R/stream.R |only paws.common-0.7.7/paws.common/src/uuid.h |only paws.common-0.8.0/paws.common/DESCRIPTION | 25 - paws.common-0.8.0/paws.common/MD5 | 109 ++-- paws.common-0.8.0/paws.common/NAMESPACE | 17 paws.common-0.8.0/paws.common/NEWS.md | 11 paws.common-0.8.0/paws.common/R/RcppExports.R | 52 ++ paws.common-0.8.0/paws.common/R/cache.R | 4 paws.common-0.8.0/paws.common/R/client.R | 160 +++++-- paws.common-0.8.0/paws.common/R/config.R | 40 + paws.common-0.8.0/paws.common/R/credential_providers.R | 67 ++- paws.common-0.8.0/paws.common/R/credential_sso.R | 123 +++++ paws.common-0.8.0/paws.common/R/credential_sts.R | 223 +++++++++- paws.common-0.8.0/paws.common/R/credentials.R | 2 paws.common-0.8.0/paws.common/R/custom_rds.R | 58 ++ paws.common-0.8.0/paws.common/R/custom_s3.R | 175 +++---- paws.common-0.8.0/paws.common/R/handlers_core.R | 2 paws.common-0.8.0/paws.common/R/handlers_jsonrpc.R | 16 paws.common-0.8.0/paws.common/R/handlers_restjson.R | 5 paws.common-0.8.0/paws.common/R/handlers_restxml.R | 34 + paws.common-0.8.0/paws.common/R/handlers_stream.R |only paws.common-0.8.0/paws.common/R/head_bucket.R | 153 ++++++ paws.common-0.8.0/paws.common/R/iniutil.R | 26 - paws.common-0.8.0/paws.common/R/logging.R | 62 +- paws.common-0.8.0/paws.common/R/mock_bindings.R |only paws.common-0.8.0/paws.common/R/net.R | 79 +-- paws.common-0.8.0/paws.common/R/onLoad.R | 1 paws.common-0.8.0/paws.common/R/paginate.R | 4 paws.common-0.8.0/paws.common/R/request.R | 21 paws.common-0.8.0/paws.common/R/signer_v1.R | 4 paws.common-0.8.0/paws.common/R/signer_v4.R | 27 - paws.common-0.8.0/paws.common/R/url.R | 139 ------ paws.common-0.8.0/paws.common/R/util.R | 18 paws.common-0.8.0/paws.common/R/xmlutil.R | 20 paws.common-0.8.0/paws.common/man/new_operation.Rd | 5 paws.common-0.8.0/paws.common/man/paws_config_log.Rd | 1 paws.common-0.8.0/paws.common/man/paws_stream.Rd |only paws.common-0.8.0/paws.common/src/RcppExports.cpp | 108 ++++ paws.common-0.8.0/paws.common/src/encoding.cpp | 203 ++++++--- paws.common-0.8.0/paws.common/src/encoding.h |only paws.common-0.8.0/paws.common/src/ini_utils.cpp |only paws.common-0.8.0/paws.common/src/json_escape.cpp | 160 +++++-- paws.common-0.8.0/paws.common/src/resolve_endpoint.cpp | 157 +++++-- paws.common-0.8.0/paws.common/src/url_parse.cpp |only paws.common-0.8.0/paws.common/src/utils.cpp | 77 ++- paws.common-0.8.0/paws.common/tests/testthat/empty_ini |only paws.common-0.8.0/paws.common/tests/testthat/test_cache.R | 6 paws.common-0.8.0/paws.common/tests/testthat/test_client.R | 62 -- paws.common-0.8.0/paws.common/tests/testthat/test_config.R | 4 paws.common-0.8.0/paws.common/tests/testthat/test_credentials.R | 8 paws.common-0.8.0/paws.common/tests/testthat/test_custom_rds.R | 90 +++- paws.common-0.8.0/paws.common/tests/testthat/test_custom_s3.R | 99 ---- paws.common-0.8.0/paws.common/tests/testthat/test_endpoint_vendor.R |only paws.common-0.8.0/paws.common/tests/testthat/test_escape.R | 5 paws.common-0.8.0/paws.common/tests/testthat/test_handlers_stream.R |only paws.common-0.8.0/paws.common/tests/testthat/test_iniutil.R | 6 paws.common-0.8.0/paws.common/tests/testthat/test_logging.R | 22 paws.common-0.8.0/paws.common/tests/testthat/test_service.R | 4 paws.common-0.8.0/paws.common/tests/testthat/test_signer_query.R | 8 paws.common-0.8.0/paws.common/tests/testthat/test_signer_v4.R | 4 paws.common-0.8.0/paws.common/tests/testthat/test_url.R | 42 + 61 files changed, 1932 insertions(+), 816 deletions(-)
Title: Validate 'JSON' Schema
Description: Uses the node library 'is-my-json-valid' or 'ajv' to
validate 'JSON' against a 'JSON' schema. Drafts 04, 06 and 07 of
'JSON' schema are supported.
Author: Rich FitzJohn [aut, cre],
Rob Ashton [aut],
Alex Hill [ctb],
Alicia Schep [ctb],
Ian Lyttle [ctb],
Kara Woo [ctb],
Mathias Buus [aut, cph] ,
Evgeny Poberezkin [aut, cph]
Maintainer: Rich FitzJohn <rich.fitzjohn@gmail.com>
Diff between jsonvalidate versions 1.3.2 dated 2021-11-03 and 1.5.0 dated 2025-02-07
DESCRIPTION | 10 LICENSE | 2 MD5 | 45 +- NAMESPACE | 2 NEWS.md | 19 - R/read.R | 37 +- R/schema.R |only R/serialise.R |only R/util.R | 24 + R/validate.R | 114 +------ R/zzz.R | 6 README.md | 4 build/vignette.rds |binary inst/WORDLIST | 4 inst/bundle.js | 2 inst/doc/jsonvalidate.R | 96 +++++- inst/doc/jsonvalidate.Rmd | 160 +++++++--- inst/doc/jsonvalidate.html | 626 ++++++++++++++++++++++++++-------------- man/json_schema.Rd |only man/json_serialise.Rd |only man/json_validate.Rd | 3 man/json_validator.Rd | 20 - tests/testthat/test-serialise.R |only tests/testthat/test-util.R | 28 + tests/testthat/test-validator.R | 153 +++++++++ vignettes/jsonvalidate.Rmd | 160 +++++++--- 26 files changed, 1076 insertions(+), 439 deletions(-)
Title: A 'DuckDB'-Backed Version of 'dplyr'
Description: A drop-in replacement for 'dplyr', powered by 'DuckDB' for
performance. Offers convenient utilities for working with in-memory and
larger-than-memory data while retaining full 'dplyr' compatibility.
Author: Hannes Muehleisen [aut] ,
Kirill Mueller [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckplyr versions 0.4.1 dated 2024-07-12 and 1.0.0 dated 2025-02-07
duckplyr-0.4.1/duckplyr/tests/testthat/_snaps/across.md |only duckplyr-0.4.1/duckplyr/tests/testthat/_snaps/all-equal.md |only duckplyr-0.4.1/duckplyr/tests/testthat/_snaps/arrange.md |only duckplyr-0.4.1/duckplyr/tests/testthat/_snaps/colwise-select.md |only duckplyr-0.4.1/duckplyr/tests/testthat/_snaps/count-tally.md |only duckplyr-0.4.1/duckplyr/tests/testthat/_snaps/deprec-funs.md |only duckplyr-0.4.1/duckplyr/tests/testthat/_snaps/distinct.md |only duckplyr-0.4.1/duckplyr/tests/testthat/_snaps/filter.md |only duckplyr-0.4.1/duckplyr/tests/testthat/_snaps/join-rows.md |only duckplyr-0.4.1/duckplyr/tests/testthat/_snaps/join.md |only duckplyr-0.4.1/duckplyr/tests/testthat/_snaps/mutate.md |only duckplyr-0.4.1/duckplyr/tests/testthat/_snaps/relocate.md |only duckplyr-0.4.1/duckplyr/tests/testthat/_snaps/rename.md |only duckplyr-0.4.1/duckplyr/tests/testthat/_snaps/select.md |only duckplyr-0.4.1/duckplyr/tests/testthat/_snaps/sets.md |only duckplyr-0.4.1/duckplyr/tests/testthat/_snaps/slice.md |only duckplyr-0.4.1/duckplyr/tests/testthat/_snaps/summarise.md |only duckplyr-0.4.1/duckplyr/tests/testthat/_snaps/transmute.md |only duckplyr-0.4.1/duckplyr/tests/testthat/helper-encoding.R |only duckplyr-0.4.1/duckplyr/tests/testthat/helper-s3.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-across.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-all-equal.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-arrange.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-colwise-select.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-count-tally.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-deprec-do.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-deprec-funs.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-distinct.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-filter.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-generics.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-group-map.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-groups-with.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-join-rows.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-join.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-mutate.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-pull.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-relocate.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-rename.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-select.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-sets.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-slice.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-summarise.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-transmute.R |only duckplyr-1.0.0/duckplyr/DESCRIPTION | 40 duckplyr-1.0.0/duckplyr/MD5 | 552 + duckplyr-1.0.0/duckplyr/NAMESPACE | 154 duckplyr-1.0.0/duckplyr/NEWS.md | 99 duckplyr-1.0.0/duckplyr/R/aaa-meta.R | 1 duckplyr-1.0.0/duckplyr/R/add_count.R | 8 duckplyr-1.0.0/duckplyr/R/anti_join-rd.R |only duckplyr-1.0.0/duckplyr/R/anti_join.R | 10 duckplyr-1.0.0/duckplyr/R/arrange-rd.R |only duckplyr-1.0.0/duckplyr/R/arrange.R | 27 duckplyr-1.0.0/duckplyr/R/as_duckplyr_df.R | 28 duckplyr-1.0.0/duckplyr/R/as_duckplyr_tibble.R | 15 duckplyr-1.0.0/duckplyr/R/auto_copy.R | 6 duckplyr-1.0.0/duckplyr/R/collect-rd.R |only duckplyr-1.0.0/duckplyr/R/collect.R | 4 duckplyr-1.0.0/duckplyr/R/compute-rd.R |only duckplyr-1.0.0/duckplyr/R/compute.R | 44 duckplyr-1.0.0/duckplyr/R/compute_file.R |only duckplyr-1.0.0/duckplyr/R/config.R | 42 duckplyr-1.0.0/duckplyr/R/construct_constant.R | 4 duckplyr-1.0.0/duckplyr/R/construct_function.R | 4 duckplyr-1.0.0/duckplyr/R/construct_reference.R | 4 duckplyr-1.0.0/duckplyr/R/construct_window.R | 4 duckplyr-1.0.0/duckplyr/R/count-rd.R |only duckplyr-1.0.0/duckplyr/R/count.R | 38 duckplyr-1.0.0/duckplyr/R/cross_join.R | 10 duckplyr-1.0.0/duckplyr/R/distinct-rd.R |only duckplyr-1.0.0/duckplyr/R/distinct.R | 12 duckplyr-1.0.0/duckplyr/R/do.R | 8 duckplyr-1.0.0/duckplyr/R/dplyr.R | 1 duckplyr-1.0.0/duckplyr/R/duckplyr-across.R |only duckplyr-1.0.0/duckplyr/R/duckplyr-package.R | 349 - duckplyr-1.0.0/duckplyr/R/duckplyr_df.R |only duckplyr-1.0.0/duckplyr/R/duckplyr_execute.R |only duckplyr-1.0.0/duckplyr/R/ducktbl.R |only duckplyr-1.0.0/duckplyr/R/exec.R |only duckplyr-1.0.0/duckplyr/R/explain-rd.R |only duckplyr-1.0.0/duckplyr/R/explain.R | 28 duckplyr-1.0.0/duckplyr/R/fallback.R | 309 - duckplyr-1.0.0/duckplyr/R/filter-rd.R |only duckplyr-1.0.0/duckplyr/R/filter.R | 23 duckplyr-1.0.0/duckplyr/R/flights.R |only duckplyr-1.0.0/duckplyr/R/full_join-rd.R |only duckplyr-1.0.0/duckplyr/R/full_join.R | 18 duckplyr-1.0.0/duckplyr/R/group_by.R | 8 duckplyr-1.0.0/duckplyr/R/group_indices.R | 8 duckplyr-1.0.0/duckplyr/R/group_keys.R | 8 duckplyr-1.0.0/duckplyr/R/group_map.R | 10 duckplyr-1.0.0/duckplyr/R/group_modify.R | 8 duckplyr-1.0.0/duckplyr/R/group_nest.R | 8 duckplyr-1.0.0/duckplyr/R/group_size.R | 8 duckplyr-1.0.0/duckplyr/R/group_split.R | 8 duckplyr-1.0.0/duckplyr/R/group_trim.R | 8 duckplyr-1.0.0/duckplyr/R/group_vars.R | 2 duckplyr-1.0.0/duckplyr/R/groups.R | 8 duckplyr-1.0.0/duckplyr/R/handle_desc.R | 45 duckplyr-1.0.0/duckplyr/R/head-rd.R |only duckplyr-1.0.0/duckplyr/R/head.R | 11 duckplyr-1.0.0/duckplyr/R/inner_join-rd.R |only duckplyr-1.0.0/duckplyr/R/inner_join.R | 20 duckplyr-1.0.0/duckplyr/R/intersect-rd.R |only duckplyr-1.0.0/duckplyr/R/intersect.R | 18 duckplyr-1.0.0/duckplyr/R/io-.R | 12 duckplyr-1.0.0/duckplyr/R/io-csv.R | 2 duckplyr-1.0.0/duckplyr/R/io-parquet.R | 5 duckplyr-1.0.0/duckplyr/R/io2.R |only duckplyr-1.0.0/duckplyr/R/is_duckplyr_df.R | 6 duckplyr-1.0.0/duckplyr/R/join.R | 28 duckplyr-1.0.0/duckplyr/R/last.R |only duckplyr-1.0.0/duckplyr/R/left_join-rd.R |only duckplyr-1.0.0/duckplyr/R/left_join.R | 21 duckplyr-1.0.0/duckplyr/R/mutate-rd.R |only duckplyr-1.0.0/duckplyr/R/mutate.R | 65 duckplyr-1.0.0/duckplyr/R/n-col.R |only duckplyr-1.0.0/duckplyr/R/n_groups.R | 8 duckplyr-1.0.0/duckplyr/R/nest_by.R | 8 duckplyr-1.0.0/duckplyr/R/nest_join.R | 10 duckplyr-1.0.0/duckplyr/R/not-supported.R |only duckplyr-1.0.0/duckplyr/R/overwrite.R | 2 duckplyr-1.0.0/duckplyr/R/print.R |only duckplyr-1.0.0/duckplyr/R/project.R | 3 duckplyr-1.0.0/duckplyr/R/prudence.R |only duckplyr-1.0.0/duckplyr/R/pull-rd.R |only duckplyr-1.0.0/duckplyr/R/pull.R | 14 duckplyr-1.0.0/duckplyr/R/reframe.R | 8 duckplyr-1.0.0/duckplyr/R/relational-df.R | 45 duckplyr-1.0.0/duckplyr/R/relational-duckdb.R | 172 duckplyr-1.0.0/duckplyr/R/relational-expr.R | 16 duckplyr-1.0.0/duckplyr/R/relational.R | 116 duckplyr-1.0.0/duckplyr/R/relocate-rd.R |only duckplyr-1.0.0/duckplyr/R/relocate.R | 14 duckplyr-1.0.0/duckplyr/R/rename-rd.R |only duckplyr-1.0.0/duckplyr/R/rename.R | 14 duckplyr-1.0.0/duckplyr/R/rename_with.R | 8 duckplyr-1.0.0/duckplyr/R/restore.R | 2 duckplyr-1.0.0/duckplyr/R/right_join-rd.R |only duckplyr-1.0.0/duckplyr/R/right_join.R | 20 duckplyr-1.0.0/duckplyr/R/rows_append.R | 10 duckplyr-1.0.0/duckplyr/R/rows_delete.R | 10 duckplyr-1.0.0/duckplyr/R/rows_insert.R | 10 duckplyr-1.0.0/duckplyr/R/rows_patch.R | 10 duckplyr-1.0.0/duckplyr/R/rows_update.R | 10 duckplyr-1.0.0/duckplyr/R/rows_upsert.R | 10 duckplyr-1.0.0/duckplyr/R/rowwise.R | 8 duckplyr-1.0.0/duckplyr/R/select-rd.R |only duckplyr-1.0.0/duckplyr/R/select.R | 17 duckplyr-1.0.0/duckplyr/R/semi_join-rd.R |only duckplyr-1.0.0/duckplyr/R/semi_join.R | 10 duckplyr-1.0.0/duckplyr/R/setdiff-rd.R |only duckplyr-1.0.0/duckplyr/R/setdiff.R | 18 duckplyr-1.0.0/duckplyr/R/setequal.R | 10 duckplyr-1.0.0/duckplyr/R/slice.R | 8 duckplyr-1.0.0/duckplyr/R/slice_head.R | 8 duckplyr-1.0.0/duckplyr/R/slice_sample.R | 8 duckplyr-1.0.0/duckplyr/R/slice_tail.R | 8 duckplyr-1.0.0/duckplyr/R/sql.R |only duckplyr-1.0.0/duckplyr/R/stats.R | 2 duckplyr-1.0.0/duckplyr/R/summarise-rd.R |only duckplyr-1.0.0/duckplyr/R/summarise.R | 20 duckplyr-1.0.0/duckplyr/R/symdiff-rd.R |only duckplyr-1.0.0/duckplyr/R/symdiff.R | 19 duckplyr-1.0.0/duckplyr/R/telemetry.R | 69 duckplyr-1.0.0/duckplyr/R/tpch.R | 278 duckplyr-1.0.0/duckplyr/R/tpch2.R | 220 duckplyr-1.0.0/duckplyr/R/translate.R | 256 duckplyr-1.0.0/duckplyr/R/transmute-rd.R |only duckplyr-1.0.0/duckplyr/R/transmute.R | 17 duckplyr-1.0.0/duckplyr/R/ungroup.R | 8 duckplyr-1.0.0/duckplyr/R/union-rd.R |only duckplyr-1.0.0/duckplyr/R/union.R | 9 duckplyr-1.0.0/duckplyr/R/union_all-rd.R |only duckplyr-1.0.0/duckplyr/R/union_all.R | 19 duckplyr-1.0.0/duckplyr/R/unique_table_name.R |only duckplyr-1.0.0/duckplyr/R/zzz-methods.R | 5 duckplyr-1.0.0/duckplyr/R/zzz.R | 17 duckplyr-1.0.0/duckplyr/README.md | 876 +-- duckplyr-1.0.0/duckplyr/build |only duckplyr-1.0.0/duckplyr/inst |only duckplyr-1.0.0/duckplyr/man/anti_join.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/arrange.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/as_duckplyr_df.Rd | 11 duckplyr-1.0.0/duckplyr/man/collect.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/compute.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/compute_file.Rd |only duckplyr-1.0.0/duckplyr/man/config.Rd | 41 duckplyr-1.0.0/duckplyr/man/count.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/db_exec.Rd |only duckplyr-1.0.0/duckplyr/man/df_from_file.Rd | 3 duckplyr-1.0.0/duckplyr/man/distinct.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/duckdb_tibble.Rd |only duckplyr-1.0.0/duckplyr/man/duckplyr-package.Rd | 10 duckplyr-1.0.0/duckplyr/man/duckplyr_execute.Rd |only duckplyr-1.0.0/duckplyr/man/explain.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/fallback.Rd | 76 duckplyr-1.0.0/duckplyr/man/figures |only duckplyr-1.0.0/duckplyr/man/filter.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/flights_df.Rd |only duckplyr-1.0.0/duckplyr/man/full_join.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/head.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/inner_join.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/intersect.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/is_duckplyr_df.Rd | 3 duckplyr-1.0.0/duckplyr/man/last_rel.Rd |only duckplyr-1.0.0/duckplyr/man/left_join.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/mutate.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/new_relational.Rd | 6 duckplyr-1.0.0/duckplyr/man/new_relexpr.Rd | 11 duckplyr-1.0.0/duckplyr/man/pull.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/read_file_duckdb.Rd |only duckplyr-1.0.0/duckplyr/man/read_sql_duckdb.Rd |only duckplyr-1.0.0/duckplyr/man/reexports.Rd | 117 duckplyr-1.0.0/duckplyr/man/relocate.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/rename.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/right_join.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/select.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/semi_join.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/setdiff.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/stats_show.Rd | 2 duckplyr-1.0.0/duckplyr/man/summarise.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/symdiff.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/transmute.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/union.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/union_all.duckplyr_df.Rd |only duckplyr-1.0.0/duckplyr/man/unsupported.Rd |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/as_duckplyr_tibble.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/compute.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/demo.md | 82 duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-across.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-all-equal.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-arrange.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-bind-cols.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-bind-rows.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-by.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-case-match.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-case-when.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-coalesce.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-conditions.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-consecutive-id.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-context.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-count-tally.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-desc.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-distinct.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-filter.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-funs.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-grouped-df.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-if-else.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-join-by.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-join-cols.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-join-cross.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-join-rows.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-join.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-lead-lag.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-mutate.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-n-distinct.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-na-if.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-nth-value.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-order-by.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-pick.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-rank.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-reframe.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-relocate.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-rename.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-rows.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-rowwise.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-sample.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-select.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-sets.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-slice.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-summarise.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/dplyr-transmute.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/duckplyr-across.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/ducktbl.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/fallback |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/fallback.md | 210 duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/handle_desc.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/overwrite.md |only duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/relational-duckdb.md | 25 duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/relational.md | 6 duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/telemetry.md | 125 duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/tpch.md | 44 duckplyr-1.0.0/duckplyr/tests/testthat/_snaps/translate.md | 390 + duckplyr-1.0.0/duckplyr/tests/testthat/helper-dplyr-encoding.R |only duckplyr-1.0.0/duckplyr/tests/testthat/helper-dplyr-pick.R |only duckplyr-1.0.0/duckplyr/tests/testthat/helper-dplyr-s3.R |only duckplyr-1.0.0/duckplyr/tests/testthat/helper-skip.R |only duckplyr-1.0.0/duckplyr/tests/testthat/helper-taxi.R | 8 duckplyr-1.0.0/duckplyr/tests/testthat/setup.R | 8 duckplyr-1.0.0/duckplyr/tests/testthat/test-altrep.R | 11 duckplyr-1.0.0/duckplyr/tests/testthat/test-as_duckplyr_df.R | 1239 ++-- duckplyr-1.0.0/duckplyr/tests/testthat/test-as_duckplyr_tibble.R | 15 duckplyr-1.0.0/duckplyr/tests/testthat/test-compute.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-compute_file.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-demo.R | 60 duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-across.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-all-equal.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-arrange.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-bind-cols.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-bind-rows.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-by.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-case-match.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-case-when.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-coalesce.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-colwise-funs.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-conditions.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-consecutive-id.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-context.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-copy-to.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-count-tally.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-desc.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-distinct.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-filter.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-funs.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-generics.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-group-by.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-group-data.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-group-map.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-group-nest.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-group-split.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-group-trim.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-grouped-df.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-groups-with.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-if-else.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-join-by.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-join-cols.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-join-cross.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-join-rows.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-join.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-lead-lag.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-mutate.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-n-distinct.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-na-if.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-near.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-nest-by.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-nth-value.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-order-by.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-pick.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-pull.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-rank.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-reframe.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-relocate.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-rename.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-rows.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-rowwise.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-sample.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-select-helpers.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-select.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-sets.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-slice.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-summarise.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr-transmute.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-dplyr.R | 19 duckplyr-1.0.0/duckplyr/tests/testthat/test-duckdb.R | 3 duckplyr-1.0.0/duckplyr/tests/testthat/test-duckplyr-across.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-duckplyr.R | 25 duckplyr-1.0.0/duckplyr/tests/testthat/test-ducktbl.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-expr.R | 4 duckplyr-1.0.0/duckplyr/tests/testthat/test-fallback.R | 131 duckplyr-1.0.0/duckplyr/tests/testthat/test-handle_desc.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-head.R | 9 duckplyr-1.0.0/duckplyr/tests/testthat/test-io-csv.R | 2 duckplyr-1.0.0/duckplyr/tests/testthat/test-io-parquet.R | 22 duckplyr-1.0.0/duckplyr/tests/testthat/test-io2.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-last.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-overwrite.R | 8 duckplyr-1.0.0/duckplyr/tests/testthat/test-prom.R | 2 duckplyr-1.0.0/duckplyr/tests/testthat/test-prudence.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-rel_api.R | 2900 +++++++--- duckplyr-1.0.0/duckplyr/tests/testthat/test-relational-duckdb.R | 42 duckplyr-1.0.0/duckplyr/tests/testthat/test-relational.R | 2 duckplyr-1.0.0/duckplyr/tests/testthat/test-sql.R |only duckplyr-1.0.0/duckplyr/tests/testthat/test-telemetry.R | 124 duckplyr-1.0.0/duckplyr/tests/testthat/test-tpch.R | 50 duckplyr-1.0.0/duckplyr/tests/testthat/test-translate.R | 111 duckplyr-1.0.0/duckplyr/tests/testthat/tpch-sf0.01/q02.csv | 8 duckplyr-1.0.0/duckplyr/tests/testthat/tpch-sf0.01/q10.csv | 40 duckplyr-1.0.0/duckplyr/tests/testthat/tpch-sf0.01/q13.csv | 55 duckplyr-1.0.0/duckplyr/tests/testthat/tpch-sf1/q02.csv | 200 duckplyr-1.0.0/duckplyr/tests/testthat/tpch-sf1/q10.csv | 40 duckplyr-1.0.0/duckplyr/tests/testthat/tpch-sf1/q13.csv | 82 duckplyr-1.0.0/duckplyr/vignettes |only 383 files changed, 6826 insertions(+), 4145 deletions(-)
Title: Classifications and Codelists for Statistics Norway
Description: Functions to search, retrieve, apply and update classifications
and codelists using Statistics Norway's API <https://www.ssb.no/klass>
from the system 'KLASS'. Retrieves classifications by date with options
to choose language, hierarchical level and formatting.
Author: Susie Jentoft [aut, cre],
Diana-Cristina Iancu [aut],
Lisa Li [aut],
Oeyvind I. Berntsen [aut],
Statistics Norway [cph]
Maintainer: Susie Jentoft <susie.jentoft@ssb.no>
Diff between klassR versions 1.0.1 dated 2024-12-03 and 1.0.2 dated 2025-02-07
klassR-1.0.1/klassR/man/get_klass_changes.Rd |only klassR-1.0.2/klassR/DESCRIPTION | 6 klassR-1.0.2/klassR/MD5 | 27 +-- klassR-1.0.2/klassR/NEWS.md | 8 klassR-1.0.2/klassR/R/UpdateKlass-graph-build.R | 156 +++++++++++------- klassR-1.0.2/klassR/R/UpdateKlass-graph-navigate.R | 4 klassR-1.0.2/klassR/data/klass_131_1964_graph.RData |binary klassR-1.0.2/klassR/data/klass_131_2020_graph.RData |binary klassR-1.0.2/klassR/data/klass_131_graph.RData |binary klassR-1.0.2/klassR/man/find_variant_from.Rd | 3 klassR-1.0.2/klassR/man/find_variant_to.Rd | 3 klassR-1.0.2/klassR/man/klass_131_1964_graph.Rd | 2 klassR-1.0.2/klassR/man/klass_131_2020_graph.Rd | 2 klassR-1.0.2/klassR/man/klass_131_graph.Rd | 2 klassR-1.0.2/klassR/tests/testthat/test-UpdateKlass.R | 69 +++++++ 15 files changed, 191 insertions(+), 91 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-01-23 3.3.1
2024-06-12 3.3.0
2024-05-27 3.2.6
2024-03-19 3.2.5
2024-02-29 3.2.4
2024-02-20 3.2.2
2023-09-25 3.2.1
2023-09-06 3.2.0
2023-09-01 3.1
2023-06-22 3.0
2023-03-07 2.8
2023-02-13 2.7
2023-01-22 2.6
2022-11-30 2.5
2022-08-13 2.4
2022-07-08 2.3
2022-06-18 2.2
2022-06-08 2.1
2021-09-28 2.0
2021-07-06 1.9
2020-12-13 1.8
2020-03-22 1.7
2020-01-29 1.6
2019-12-06 1.5
2019-10-26 1.4
2019-09-22 1.3
2019-02-06 1.2
2018-10-18 1.1
2018-10-10 1.0
2018-06-09 0.9
2018-06-02 0.8
2018-04-20 0.7
2018-01-20 0.6
2017-10-08 0.5
2017-08-18 0.4
2017-06-05 0.2
2017-03-05 0.1-801
2016-10-27 0.1-79
2016-10-01 0.1-77
2016-09-24 0.1-76
2016-09-03 0.1-75
2016-07-27 0.1-74
2016-05-16 0.1-73
2016-04-23 0.1-72
2016-04-01 0.1-71
2016-03-18 0.1-69
2016-02-21 0.1-68
2016-02-05 0.1-67
2016-01-22 0.1-66
2015-11-21 0.1-64
2015-10-09 0.1-63
2015-08-24 0.1-62
2015-06-11 0.1-61
2015-05-14 0.1-6
2015-03-26 0.1-5
2014-12-12 0.1-4
2014-10-24 0.1-3
2014-07-30 0.1-2
2014-05-11 0.1-1
2014-03-19 0.1-0
Title: Minimalist Async Evaluation Framework for R
Description: Designed for simplicity, a 'mirai' evaluates an R expression
asynchronously in a parallel process, locally or distributed over the
network. The result is automatically available upon completion. Modern
networking and concurrency, built on 'nanonext' and 'NNG' (Nanomsg Next
Gen), ensures reliable and efficient scheduling over fast inter-process
communications or TCP/IP secured by TLS. Distributed computing can launch
remote resources via SSH or cluster managers. An inherently queued
architecture handles many more tasks than available processes, and requires
no storage on the file system. Innovative features include support for
otherwise non-exportable reference objects, event-driven promises, and
asynchronous parallel map.
Author: Charlie Gao [aut, cre] ,
Joe Cheng [ctb],
Hibiki AI Limited [cph],
Posit Software, PBC [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between mirai versions 2.0.1 dated 2025-01-16 and 2.1.0 dated 2025-02-07
mirai-2.0.1/mirai/man/saisei.Rd |only mirai-2.1.0/mirai/DESCRIPTION | 25 +- mirai-2.1.0/mirai/MD5 | 47 ++--- mirai-2.1.0/mirai/NAMESPACE | 1 mirai-2.1.0/mirai/NEWS.md | 22 ++ mirai-2.1.0/mirai/R/daemon.R | 81 --------- mirai-2.1.0/mirai/R/daemons.R | 133 ++++----------- mirai-2.1.0/mirai/R/dispatcher.R | 250 ----------------------------- mirai-2.1.0/mirai/R/launchers.R | 4 mirai-2.1.0/mirai/R/map.R | 98 +++++++---- mirai-2.1.0/mirai/R/mirai-package.R | 40 ++-- mirai-2.1.0/mirai/R/mirai.R | 17 - mirai-2.1.0/mirai/README.md | 61 +++---- mirai-2.1.0/mirai/inst/doc/mirai.Rmd | 125 +++++++------- mirai-2.1.0/mirai/inst/doc/mirai.html | 127 ++++++++------ mirai-2.1.0/mirai/man/call_mirai.Rd | 3 mirai-2.1.0/mirai/man/collect_mirai.Rd | 3 mirai-2.1.0/mirai/man/daemons.Rd | 34 +-- mirai-2.1.0/mirai/man/dispatcher.Rd | 13 - mirai-2.1.0/mirai/man/mirai-package.Rd | 17 + mirai-2.1.0/mirai/man/mirai.Rd | 3 mirai-2.1.0/mirai/man/mirai_map.Rd | 13 - mirai-2.1.0/mirai/tests/tests.R | 76 +++----- mirai-2.1.0/mirai/vignettes/mirai.Rmd | 125 +++++++------- mirai-2.1.0/mirai/vignettes/mirai.Rmd.orig | 16 + 25 files changed, 520 insertions(+), 814 deletions(-)
Title: Understand and Describe Bayesian Models and Posterior
Distributions
Description: Provides utilities to describe posterior
distributions and Bayesian models. It includes point-estimates such as
Maximum A Posteriori (MAP), measures of dispersion (Highest Density
Interval - HDI; Kruschke, 2015 <doi:10.1016/C2012-0-00477-2>) and
indices used for null-hypothesis testing (such as ROPE percentage, pd
and Bayes factors). References: Makowski et al. (2021) <doi:10.21105/joss.01541>.
Author: Dominique Makowski [aut, cre] ,
Daniel Luedecke [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Micah K. Wilson [aut] ,
Brenton M. Wiernik [aut] ,
Paul-Christian Buerkner [rev],
Tristan Mahr [rev] ,
Henrik Singmann [ctb] ,
Quentin F. Gron [...truncated...]
Maintainer: Dominique Makowski <dom.makowski@gmail.com>
Diff between bayestestR versions 0.15.1 dated 2025-01-17 and 0.15.2 dated 2025-02-07
bayestestR-0.15.1/bayestestR/tests/testthat/_snaps |only bayestestR-0.15.2/bayestestR/DESCRIPTION | 8 +- bayestestR-0.15.2/bayestestR/MD5 | 28 ++++------ bayestestR-0.15.2/bayestestR/NEWS.md | 14 +++++ bayestestR-0.15.2/bayestestR/R/describe_posterior.R | 19 ++++++ bayestestR-0.15.2/bayestestR/R/rope_range.R | 4 - bayestestR-0.15.2/bayestestR/README.md | 18 ++---- bayestestR-0.15.2/bayestestR/inst/WORDLIST | 1 bayestestR-0.15.2/bayestestR/man/figures/unnamed-chunk-10-1.png |binary bayestestR-0.15.2/bayestestR/man/figures/unnamed-chunk-12-1.png |binary bayestestR-0.15.2/bayestestR/man/figures/unnamed-chunk-14-1.png |binary bayestestR-0.15.2/bayestestR/man/figures/unnamed-chunk-16-1.png |binary bayestestR-0.15.2/bayestestR/man/figures/unnamed-chunk-7-1.png |binary bayestestR-0.15.2/bayestestR/man/figures/unnamed-chunk-8-1.png |binary bayestestR-0.15.2/bayestestR/tests/testthat/test-rope.R | 26 ++++----- 15 files changed, 72 insertions(+), 46 deletions(-)
Title: Automated Reporting of Results and Statistical Models
Description: The aim of the 'report' package is to bridge the gap between
R’s output and the formatted results contained in your manuscript.
This package converts statistical models and data frames into textual
reports suited for publication, ensuring standardization and quality
in results reporting.
Author: Dominique Makowski [aut] ,
Daniel Luedecke [aut] ,
Indrajeet Patil [aut] ,
Remi Theriault [aut, cre] ,
Mattan S. Ben-Shachar [aut] ,
Brenton M. Wiernik [aut] ,
Rudolf Siegel [ctb] ,
Camden Bock [ctb]
Maintainer: Remi Theriault <remi.theriault@mail.mcgill.ca>
Diff between report versions 0.6.0 dated 2025-01-26 and 0.6.1 dated 2025-02-07
DESCRIPTION | 17 +++++++++-------- MD5 | 8 ++++---- NEWS.md | 15 ++++++++++----- R/report.estimate_contrasts.R | 2 +- man/report.estimate_contrasts.Rd | 2 +- 5 files changed, 25 insertions(+), 19 deletions(-)
Title: Build and Raytrace 3D Scenes
Description: Render scenes using pathtracing. Build 3D scenes out of spheres, cubes, planes, disks, triangles, cones, curves, line segments, cylinders, ellipsoids, and 3D models in the 'Wavefront' OBJ file format or the PLY Polygon File Format. Supports several material types, textures, multicore rendering, and tone-mapping. Based on the "Ray Tracing in One Weekend" book series. Peter Shirley (2018) <https://raytracing.github.io>.
Author: Tyler Morgan-Wall [aut, cph, cre]
,
Syoyo Fujita [ctb, cph],
Melissa O'Neill [ctb, cph],
Vilya Harvey [ctb, cph]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between rayrender versions 0.34.3 dated 2024-08-01 and 0.38.8 dated 2025-02-07
rayrender-0.34.3/rayrender/src/bvh_node.cpp |only rayrender-0.34.3/rayrender/src/bvh_node.h |only rayrender-0.34.3/rayrender/src/initialize_background.h |only rayrender-0.34.3/rayrender/src/medium.h |only rayrender-0.34.3/rayrender/src/my_new.cpp |only rayrender-0.34.3/rayrender/src/ray.cpp |only rayrender-0.34.3/rayrender/src/scenerenderer.cpp |only rayrender-0.34.3/rayrender/src/smoothing.h |only rayrender-0.38.8/rayrender/DESCRIPTION | 24 rayrender-0.38.8/rayrender/MD5 | 373 ++--- rayrender-0.38.8/rayrender/NAMESPACE | 1 rayrender-0.38.8/rayrender/R/RcppExports.R | 24 rayrender-0.38.8/rayrender/R/animate_objects.R | 14 rayrender-0.38.8/rayrender/R/catch-routine-registration.R |only rayrender-0.38.8/rayrender/R/create_instances.R | 16 rayrender-0.38.8/rayrender/R/csg_construct.R | 126 - rayrender-0.38.8/rayrender/R/generate_camera_motion.R | 12 rayrender-0.38.8/rayrender/R/generate_cornell.R | 40 rayrender-0.38.8/rayrender/R/generate_studio.R | 12 rayrender-0.38.8/rayrender/R/group_objects.R | 23 rayrender-0.38.8/rayrender/R/materials.R | 278 ++-- rayrender-0.38.8/rayrender/R/objects.R | 281 ++-- rayrender-0.38.8/rayrender/R/pig.R | 8 rayrender-0.38.8/rayrender/R/post_process_scene.R | 42 rayrender-0.38.8/rayrender/R/prepare_scene_list.R | 15 rayrender-0.38.8/rayrender/R/process_scene.R | 86 - rayrender-0.38.8/rayrender/R/r_obj.R | 2 rayrender-0.38.8/rayrender/R/ray_material.R | 3 rayrender-0.38.8/rayrender/R/render_animation.R | 25 rayrender-0.38.8/rayrender/R/render_ao.R | 42 rayrender-0.38.8/rayrender/R/render_scene.R | 64 - rayrender-0.38.8/rayrender/R/set_scene_material.R |only rayrender-0.38.8/rayrender/configure | 216 +++ rayrender-0.38.8/rayrender/configure.ac | 121 + rayrender-0.38.8/rayrender/man/animate_objects.Rd | 14 rayrender-0.38.8/rayrender/man/arrow.Rd | 10 rayrender-0.38.8/rayrender/man/bezier_curve.Rd | 8 rayrender-0.38.8/rayrender/man/cone.Rd | 10 rayrender-0.38.8/rayrender/man/create_instances.Rd | 16 rayrender-0.38.8/rayrender/man/csg_box.Rd | 6 rayrender-0.38.8/rayrender/man/csg_capsule.Rd | 8 rayrender-0.38.8/rayrender/man/csg_combine.Rd | 16 rayrender-0.38.8/rayrender/man/csg_cone.Rd | 8 rayrender-0.38.8/rayrender/man/csg_cylinder.Rd | 6 rayrender-0.38.8/rayrender/man/csg_ellipsoid.Rd | 8 rayrender-0.38.8/rayrender/man/csg_elongate.Rd | 10 rayrender-0.38.8/rayrender/man/csg_group.Rd | 2 rayrender-0.38.8/rayrender/man/csg_object.Rd | 6 rayrender-0.38.8/rayrender/man/csg_onion.Rd | 8 rayrender-0.38.8/rayrender/man/csg_plane.Rd | 6 rayrender-0.38.8/rayrender/man/csg_pyramid.Rd | 6 rayrender-0.38.8/rayrender/man/csg_rounded_cone.Rd | 8 rayrender-0.38.8/rayrender/man/csg_sphere.Rd | 10 rayrender-0.38.8/rayrender/man/csg_torus.Rd | 8 rayrender-0.38.8/rayrender/man/csg_translate.Rd | 4 rayrender-0.38.8/rayrender/man/csg_triangle.Rd | 6 rayrender-0.38.8/rayrender/man/cube.Rd | 6 rayrender-0.38.8/rayrender/man/cylinder.Rd | 6 rayrender-0.38.8/rayrender/man/dielectric.Rd | 18 rayrender-0.38.8/rayrender/man/diffuse.Rd | 22 rayrender-0.38.8/rayrender/man/disk.Rd | 6 rayrender-0.38.8/rayrender/man/ellipsoid.Rd | 9 rayrender-0.38.8/rayrender/man/extruded_path.Rd | 22 rayrender-0.38.8/rayrender/man/extruded_polygon.Rd | 14 rayrender-0.38.8/rayrender/man/generate_camera_motion.Rd | 12 rayrender-0.38.8/rayrender/man/generate_cornell.Rd | 23 rayrender-0.38.8/rayrender/man/generate_studio.Rd | 12 rayrender-0.38.8/rayrender/man/get_material_enum.Rd |only rayrender-0.38.8/rayrender/man/get_material_name.Rd |only rayrender-0.38.8/rayrender/man/glossy.Rd | 29 rayrender-0.38.8/rayrender/man/group_objects.Rd | 8 rayrender-0.38.8/rayrender/man/hair.Rd | 8 rayrender-0.38.8/rayrender/man/lambertian.Rd | 2 rayrender-0.38.8/rayrender/man/light.Rd | 12 rayrender-0.38.8/rayrender/man/mesh3d_model.Rd | 8 rayrender-0.38.8/rayrender/man/metal.Rd | 20 rayrender-0.38.8/rayrender/man/microfacet.Rd | 35 rayrender-0.38.8/rayrender/man/obj_model.Rd | 10 rayrender-0.38.8/rayrender/man/path.Rd | 16 rayrender-0.38.8/rayrender/man/pig.Rd | 8 rayrender-0.38.8/rayrender/man/prepare_scene_list.Rd | 5 rayrender-0.38.8/rayrender/man/r_obj.Rd | 2 rayrender-0.38.8/rayrender/man/raymesh_model.Rd | 14 rayrender-0.38.8/rayrender/man/render_animation.Rd | 22 rayrender-0.38.8/rayrender/man/render_ao.Rd | 20 rayrender-0.38.8/rayrender/man/render_scene.Rd | 42 rayrender-0.38.8/rayrender/man/segment.Rd | 8 rayrender-0.38.8/rayrender/man/set_scene_material.Rd |only rayrender-0.38.8/rayrender/man/sphere.Rd | 4 rayrender-0.38.8/rayrender/man/text3d.Rd | 60 rayrender-0.38.8/rayrender/man/triangle.Rd | 4 rayrender-0.38.8/rayrender/man/xy_rect.Rd | 4 rayrender-0.38.8/rayrender/man/xz_rect.Rd | 4 rayrender-0.38.8/rayrender/man/yz_rect.Rd | 4 rayrender-0.38.8/rayrender/src/Makevars.in | 2 rayrender-0.38.8/rayrender/src/Makevars.win | 4 rayrender-0.38.8/rayrender/src/PreviewDisplay.cpp | 100 - rayrender-0.38.8/rayrender/src/PreviewDisplay.h | 17 rayrender-0.38.8/rayrender/src/PrintClassSizes.cpp | 3 rayrender-0.38.8/rayrender/src/RayMatrix.cpp | 25 rayrender-0.38.8/rayrender/src/RayMatrix.h | 33 rayrender-0.38.8/rayrender/src/RcppExports.cpp | 69 + rayrender-0.38.8/rayrender/src/aabb.cpp | 228 +++ rayrender-0.38.8/rayrender/src/aabb.h | 153 +- rayrender-0.38.8/rayrender/src/adaptivesampler.cpp | 114 + rayrender-0.38.8/rayrender/src/adaptivesampler.h | 19 rayrender-0.38.8/rayrender/src/animatedtransform.cpp | 6 rayrender-0.38.8/rayrender/src/animatedtransform.h | 10 rayrender-0.38.8/rayrender/src/bounds.h | 14 rayrender-0.38.8/rayrender/src/box.cpp | 25 rayrender-0.38.8/rayrender/src/box.h | 14 rayrender-0.38.8/rayrender/src/buildscene.cpp | 59 rayrender-0.38.8/rayrender/src/buildscene.h | 10 rayrender-0.38.8/rayrender/src/bvh.cpp |only rayrender-0.38.8/rayrender/src/bvh.h |only rayrender-0.38.8/rayrender/src/calcnormals.cpp | 7 rayrender-0.38.8/rayrender/src/calctangents.cpp | 2 rayrender-0.38.8/rayrender/src/camera.cpp | 24 rayrender-0.38.8/rayrender/src/camera.h | 3 rayrender-0.38.8/rayrender/src/color.cpp | 467 ++++++- rayrender-0.38.8/rayrender/src/color.h | 13 rayrender-0.38.8/rayrender/src/constant.cpp | 14 rayrender-0.38.8/rayrender/src/constant.h | 17 rayrender-0.38.8/rayrender/src/csg.cpp | 121 + rayrender-0.38.8/rayrender/src/csg.h | 165 +- rayrender-0.38.8/rayrender/src/curve.cpp | 117 + rayrender-0.38.8/rayrender/src/curve.h | 22 rayrender-0.38.8/rayrender/src/cylinder.cpp | 197 ++- rayrender-0.38.8/rayrender/src/cylinder.h | 22 rayrender-0.38.8/rayrender/src/debug.cpp | 178 +- rayrender-0.38.8/rayrender/src/debug.h | 99 - rayrender-0.38.8/rayrender/src/define_functions.cpp | 54 rayrender-0.38.8/rayrender/src/disk.cpp | 67 - rayrender-0.38.8/rayrender/src/disk.h | 20 rayrender-0.38.8/rayrender/src/displacement.cpp | 4 rayrender-0.38.8/rayrender/src/dop.h |only rayrender-0.38.8/rayrender/src/ellipsoid.cpp | 126 + rayrender-0.38.8/rayrender/src/ellipsoid.h | 24 rayrender-0.38.8/rayrender/src/filter.cpp | 2 rayrender-0.38.8/rayrender/src/float.h | 27 rayrender-0.38.8/rayrender/src/hitable.cpp | 20 rayrender-0.38.8/rayrender/src/hitable.h | 122 + rayrender-0.38.8/rayrender/src/hitablelist.cpp | 38 rayrender-0.38.8/rayrender/src/hitablelist.h | 30 rayrender-0.38.8/rayrender/src/infinite_area_light.cpp | 175 +- rayrender-0.38.8/rayrender/src/infinite_area_light.h | 18 rayrender-0.38.8/rayrender/src/instance.cpp | 43 rayrender-0.38.8/rayrender/src/instance.h | 24 rayrender-0.38.8/rayrender/src/integrator.cpp | 142 +- rayrender-0.38.8/rayrender/src/integrator.h | 7 rayrender-0.38.8/rayrender/src/interval.h | 6 rayrender-0.38.8/rayrender/src/loopsubdiv.cpp | 32 rayrender-0.38.8/rayrender/src/material.cpp | 204 ++- rayrender-0.38.8/rayrender/src/material.h | 38 rayrender-0.38.8/rayrender/src/mathinline.h | 141 +- rayrender-0.38.8/rayrender/src/matrix.cpp | 227 +++ rayrender-0.38.8/rayrender/src/matrix.h | 22 rayrender-0.38.8/rayrender/src/mesh3d.cpp | 18 rayrender-0.38.8/rayrender/src/mesh3d.h | 21 rayrender-0.38.8/rayrender/src/microfacetdist.cpp | 26 rayrender-0.38.8/rayrender/src/normal.h | 613 +++++++-- rayrender-0.38.8/rayrender/src/onbh.h | 28 rayrender-0.38.8/rayrender/src/pdf.cpp | 102 + rayrender-0.38.8/rayrender/src/pdf.h | 6 rayrender-0.38.8/rayrender/src/plymesh.cpp | 28 rayrender-0.38.8/rayrender/src/plymesh.h | 20 rayrender-0.38.8/rayrender/src/point3.h | 752 +++++++++++ rayrender-0.38.8/rayrender/src/quaternion.cpp | 8 rayrender-0.38.8/rayrender/src/ray.h | 77 - rayrender-0.38.8/rayrender/src/raylog.cpp |only rayrender-0.38.8/rayrender/src/raylog.h |only rayrender-0.38.8/rayrender/src/raymesh.cpp | 35 rayrender-0.38.8/rayrender/src/raymesh.h | 20 rayrender-0.38.8/rayrender/src/rectangle.cpp | 190 ++ rayrender-0.38.8/rayrender/src/rectangle.h | 60 rayrender-0.38.8/rayrender/src/render_animation_rcpp.cpp | 171 +- rayrender-0.38.8/rayrender/src/render_scene_rcpp.cpp | 257 ++-- rayrender-0.38.8/rayrender/src/rng.cpp | 26 rayrender-0.38.8/rayrender/src/simd.cpp |only rayrender-0.38.8/rayrender/src/simd.h |only rayrender-0.38.8/rayrender/src/sphere.cpp | 148 +- rayrender-0.38.8/rayrender/src/sphere.h | 22 rayrender-0.38.8/rayrender/src/test-runner.cpp |only rayrender-0.38.8/rayrender/src/texture.cpp | 4 rayrender-0.38.8/rayrender/src/texture.h | 2 rayrender-0.38.8/rayrender/src/texturecache.cpp | 1 rayrender-0.38.8/rayrender/src/transform.cpp | 727 +++++++++-- rayrender-0.38.8/rayrender/src/transform.h | 13 rayrender-0.38.8/rayrender/src/transformcache.cpp | 12 rayrender-0.38.8/rayrender/src/transformcache.h | 2 rayrender-0.38.8/rayrender/src/triangle.cpp | 552 ++++++-- rayrender-0.38.8/rayrender/src/triangle.h | 17 rayrender-0.38.8/rayrender/src/trianglemesh.cpp | 35 rayrender-0.38.8/rayrender/src/trianglemesh.h | 16 rayrender-0.38.8/rayrender/src/trimesh.cpp | 32 rayrender-0.38.8/rayrender/src/trimesh.h | 21 rayrender-0.38.8/rayrender/src/vec3.h | 888 +++++++++++--- rayrender-0.38.8/rayrender/src/vectypes.cpp |only rayrender-0.38.8/rayrender/src/vectypes.h |only 199 files changed, 8502 insertions(+), 2965 deletions(-)
Title: Deep Learning with 'mlr3'
Description: Deep Learning library that extends the mlr3 framework by building
upon the 'torch' package. It allows to conveniently build, train,
and evaluate deep learning models without having to worry about low level
details. Custom architectures can be created using the graph language
defined in 'mlr3pipelines'.
Author: Sebastian Fischer [cre, aut] ,
Bernd Bischl [ctb] ,
Lukas Burk [ctb] ,
Martin Binder [aut],
Florian Pfisterer [ctb] ,
Carson Zhang [ctb]
Maintainer: Sebastian Fischer <sebf.fischer@gmail.com>
Diff between mlr3torch versions 0.1.2 dated 2024-10-15 and 0.2.0 dated 2025-02-07
mlr3torch-0.1.2/mlr3torch/man/PipeOpPreprocTorchAugmentCenterCrop.Rd |only mlr3torch-0.1.2/mlr3torch/man/PipeOpPreprocTorchAugmentColorJitter.Rd |only mlr3torch-0.1.2/mlr3torch/man/PipeOpPreprocTorchAugmentCrop.Rd |only mlr3torch-0.1.2/mlr3torch/man/PipeOpPreprocTorchAugmentHflip.Rd |only mlr3torch-0.1.2/mlr3torch/man/PipeOpPreprocTorchAugmentRandomAffine.Rd |only mlr3torch-0.1.2/mlr3torch/man/PipeOpPreprocTorchAugmentRandomChoice.Rd |only mlr3torch-0.1.2/mlr3torch/man/PipeOpPreprocTorchAugmentRandomCrop.Rd |only mlr3torch-0.1.2/mlr3torch/man/PipeOpPreprocTorchAugmentRandomHorizontalFlip.Rd |only mlr3torch-0.1.2/mlr3torch/man/PipeOpPreprocTorchAugmentRandomOrder.Rd |only mlr3torch-0.1.2/mlr3torch/man/PipeOpPreprocTorchAugmentRandomResizedCrop.Rd |only mlr3torch-0.1.2/mlr3torch/man/PipeOpPreprocTorchAugmentRandomVerticalFlip.Rd |only mlr3torch-0.1.2/mlr3torch/man/PipeOpPreprocTorchAugmentResizedCrop.Rd |only mlr3torch-0.1.2/mlr3torch/man/PipeOpPreprocTorchAugmentRotate.Rd |only mlr3torch-0.1.2/mlr3torch/man/PipeOpPreprocTorchAugmentVflip.Rd |only mlr3torch-0.1.2/mlr3torch/man/PipeOpPreprocTorchTrafoAdjustBrightness.Rd |only mlr3torch-0.1.2/mlr3torch/man/PipeOpPreprocTorchTrafoAdjustGamma.Rd |only mlr3torch-0.1.2/mlr3torch/man/PipeOpPreprocTorchTrafoAdjustHue.Rd |only mlr3torch-0.1.2/mlr3torch/man/PipeOpPreprocTorchTrafoAdjustSaturation.Rd |only mlr3torch-0.1.2/mlr3torch/man/PipeOpPreprocTorchTrafoGrayscale.Rd |only mlr3torch-0.1.2/mlr3torch/man/PipeOpPreprocTorchTrafoNormalize.Rd |only mlr3torch-0.1.2/mlr3torch/man/PipeOpPreprocTorchTrafoPad.Rd |only mlr3torch-0.1.2/mlr3torch/man/PipeOpPreprocTorchTrafoResize.Rd |only mlr3torch-0.1.2/mlr3torch/man/PipeOpPreprocTorchTrafoRgbToGrayscale.Rd |only mlr3torch-0.2.0/mlr3torch/DESCRIPTION | 62 - mlr3torch-0.2.0/mlr3torch/MD5 | 392 +++++----- mlr3torch-0.2.0/mlr3torch/NAMESPACE | 16 mlr3torch-0.2.0/mlr3torch/NEWS.md | 43 + mlr3torch-0.2.0/mlr3torch/R/CallbackSetCheckpoint.R | 12 mlr3torch-0.2.0/mlr3torch/R/CallbackSetEarlyStopping.R | 19 mlr3torch-0.2.0/mlr3torch/R/CallbackSetHistory.R | 45 - mlr3torch-0.2.0/mlr3torch/R/CallbackSetLRScheduler.R |only mlr3torch-0.2.0/mlr3torch/R/CallbackSetProgress.R | 18 mlr3torch-0.2.0/mlr3torch/R/CallbackSetTB.R |only mlr3torch-0.2.0/mlr3torch/R/CallbackSetUnfreeze.R |only mlr3torch-0.2.0/mlr3torch/R/ContextTorch.R | 13 mlr3torch-0.2.0/mlr3torch/R/LearnerTorch.R | 64 + mlr3torch-0.2.0/mlr3torch/R/LearnerTorchFeatureless.R | 13 mlr3torch-0.2.0/mlr3torch/R/LearnerTorchImage.R | 4 mlr3torch-0.2.0/mlr3torch/R/LearnerTorchMLP.R | 16 mlr3torch-0.2.0/mlr3torch/R/LearnerTorchModel.R | 3 mlr3torch-0.2.0/mlr3torch/R/LearnerTorchTabResNet.R | 8 mlr3torch-0.2.0/mlr3torch/R/LearnerTorchVision.R | 2 mlr3torch-0.2.0/mlr3torch/R/PipeOpModule.R | 2 mlr3torch-0.2.0/mlr3torch/R/PipeOpTorch.R | 12 mlr3torch-0.2.0/mlr3torch/R/PipeOpTorchActivation.R | 245 ++---- mlr3torch-0.2.0/mlr3torch/R/PipeOpTorchAdaptiveAvgPool.R |only mlr3torch-0.2.0/mlr3torch/R/PipeOpTorchAvgPool.R | 43 - mlr3torch-0.2.0/mlr3torch/R/PipeOpTorchBatchNorm.R | 45 - mlr3torch-0.2.0/mlr3torch/R/PipeOpTorchBlock.R | 30 mlr3torch-0.2.0/mlr3torch/R/PipeOpTorchCallbacks.R | 9 mlr3torch-0.2.0/mlr3torch/R/PipeOpTorchConv.R | 44 - mlr3torch-0.2.0/mlr3torch/R/PipeOpTorchConvTranspose.R | 44 - mlr3torch-0.2.0/mlr3torch/R/PipeOpTorchDropout.R | 19 mlr3torch-0.2.0/mlr3torch/R/PipeOpTorchHead.R | 23 mlr3torch-0.2.0/mlr3torch/R/PipeOpTorchIngress.R | 35 mlr3torch-0.2.0/mlr3torch/R/PipeOpTorchLayerNorm.R | 22 mlr3torch-0.2.0/mlr3torch/R/PipeOpTorchLinear.R | 23 mlr3torch-0.2.0/mlr3torch/R/PipeOpTorchLoss.R | 2 mlr3torch-0.2.0/mlr3torch/R/PipeOpTorchMaxPool.R | 44 - mlr3torch-0.2.0/mlr3torch/R/PipeOpTorchMerge.R | 49 - mlr3torch-0.2.0/mlr3torch/R/PipeOpTorchModel.R | 10 mlr3torch-0.2.0/mlr3torch/R/PipeOpTorchOptimizer.R | 7 mlr3torch-0.2.0/mlr3torch/R/PipeOpTorchReshape.R | 65 - mlr3torch-0.2.0/mlr3torch/R/PipeOpTorchSoftmax.R | 15 mlr3torch-0.2.0/mlr3torch/R/Select.R |only mlr3torch-0.2.0/mlr3torch/R/TaskClassif_cifar.R |only mlr3torch-0.2.0/mlr3torch/R/TaskClassif_lazy_iris.R | 4 mlr3torch-0.2.0/mlr3torch/R/TaskClassif_melanoma.R |only mlr3torch-0.2.0/mlr3torch/R/TaskClassif_tiny_imagenet.R | 4 mlr3torch-0.2.0/mlr3torch/R/TorchCallback.R | 13 mlr3torch-0.2.0/mlr3torch/R/TorchDescriptor.R | 10 mlr3torch-0.2.0/mlr3torch/R/TorchLoss.R | 2 mlr3torch-0.2.0/mlr3torch/R/TorchOptimizer.R | 107 -- mlr3torch-0.2.0/mlr3torch/R/aaa.R |only mlr3torch-0.2.0/mlr3torch/R/bibentries.R | 15 mlr3torch-0.2.0/mlr3torch/R/cache.R | 6 mlr3torch-0.2.0/mlr3torch/R/learner_torch_methods.R | 45 - 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Title: Weighted and Unweighted Spatial Centers
Description: Generate mean and median weighted or unweighted spatial centers.
Functions are analogous to their identically named counterparts within
'ArcGIS Pro'. Median center methodology based off of Kuhn and Kuenne
(1962) <doi:10.1111/j.1467-9787.1962.tb00902.x>.
Author: Ryan Zomorrodi [aut, cre, cph]
Maintainer: Ryan Zomorrodi <rzomor2@uic.edu>
Diff between centr versions 0.2.1 dated 2024-12-22 and 0.2.2 dated 2025-02-07
DESCRIPTION | 7 ++++--- MD5 | 6 +++--- NEWS.md | 12 ++++++++---- build/vignette.rds |binary 4 files changed, 15 insertions(+), 10 deletions(-)
Title: Bayesian Super Imposition by Translation and Rotation Growth
Curve Analysis
Description: The Super Imposition by Translation and Rotation (SITAR) model
is a shape-invariant nonlinear mixed effect model that fits a natural cubic
spline mean curve to the growth data and aligns individual-specific growth
curves to the underlying mean curve via a set of random effects (see Cole,
2010 <doi:10.1093/ije/dyq115> for details). The non-Bayesian version of the
SITAR model can be fit by using the already available R package 'sitar'. While
the 'sitar' package allows modelling of a single outcome only, the 'bsitar'
package offers great flexibility in fitting models of varying complexities,
including joint modelling of multiple outcomes such as height and weight
(multivariate model). Additionally, the 'bsitar' package allows for the simultaneous
analysis of an outcome separately for subgroups defined by a factor variable such
as gender. This is achieved by fitting separate models for each subgroup
(for example males and females for gender variable). An advantage of this approach
is [...truncated...]
Author: Satpal Sandhu [aut, cre, cph]
Maintainer: Satpal Sandhu <satpal.sandhu@bristol.ac.uk>
Diff between bsitar versions 0.2.1 dated 2024-03-19 and 0.3.2 dated 2025-02-07
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Title: Send Email Messages
Description: A light, simple tool for sending emails with minimal dependencies.
Author: Andrew B. Collier [aut, cre, cph],
Matt Dennis [ctb],
Antoine Bichat [ctb] ,
Daniel Fahey [ctb],
Johann R. Kleinbub [ctb],
Panagiotis Moulos [ctb],
Swechhya Bista [ctb],
Colin Fay [ctb]
Maintainer: Andrew B. Collier <andrew.b.collier@gmail.com>
Diff between emayili versions 0.9.2 dated 2025-01-28 and 0.9.3 dated 2025-02-07
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/envelope.R | 28 ++++++++++++++++++++++++---- R/mime.R | 8 ++++---- README.md | 14 +++++++------- 5 files changed, 42 insertions(+), 22 deletions(-)