Title: Random Generation Functionality for the 'spatstat' Family
Description: Functionality for random generation of spatial data in the 'spatstat' family of packages.
Generates random spatial patterns of points according to many simple rules (complete spatial randomness,
Poisson, binomial, random grid, systematic, cell), randomised alteration of patterns
(thinning, random shift, jittering), simulated realisations of random point processes including
simple sequential inhibition, Matern inhibition models, Neyman-Scott cluster processes
(using direct, Brix-Kendall, or hybrid algorithms),
log-Gaussian Cox processes, product shot noise cluster processes
and Gibbs point processes (using Metropolis-Hastings birth-death-shift algorithm,
alternating Gibbs sampler, or coupling-from-the-past perfect simulation).
Also generates random spatial patterns of line segments,
random tessellations, and random images (random noise, random mosaics).
Excludes random generation on a linear network,
which is covered by the separate package 'spatstat.linnet'.
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Tilman Davies [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb, cph],
David Bryant [ctb, cph],
Ya-Mei Chang [ctb, cph],
Ute Hahn [ctb],
Abdollah Jalilian [ctb],
Dominic Sc [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.random versions 3.3-2 dated 2024-09-18 and 3.3-3 dated 2025-03-18
DESCRIPTION | 16 +++++------ MD5 | 18 ++++++------ NEWS | 13 +++++++++ R/random.R | 63 ++++++++++++++++++++++++++++++++++++++++++++- inst/doc/packagesizes.txt | 1 inst/info/packagesizes.txt | 1 man/macros/defns.Rd | 4 ++ man/rpoispp.Rd | 39 ++++++++++++++++++++------- man/rpoistrunc.Rd | 5 +++ tests/Random.R | 11 +++++++ 10 files changed, 140 insertions(+), 31 deletions(-)
More information about spatstat.random at CRAN
Permanent link
Title: Temporal Exponential Random Graph Models by Bootstrapped
Pseudolikelihood
Description: Temporal Exponential Random Graph Models (TERGM) estimated by maximum pseudolikelihood with bootstrapped confidence intervals or Markov Chain Monte Carlo maximum likelihood. Goodness of fit assessment for ERGMs, TERGMs, and SAOMs. Micro-level interpretation of ERGMs and TERGMs. The methods are described in Leifeld, Cranmer and Desmarais (2018), JStatSoft <doi:10.18637/jss.v083.i06>.
Author: Philip Leifeld [aut, cre],
Skyler J. Cranmer [ctb],
Bruce A. Desmarais [ctb]
Maintainer: Philip Leifeld <philip.leifeld@manchester.ac.uk>
Diff between btergm versions 1.10.12 dated 2024-03-31 and 1.11.1 dated 2025-03-18
DESCRIPTION | 20 +- MD5 | 32 +-- NAMESPACE | 14 - R/btergm.R | 116 ++++++------- R/chemnet.R | 7 R/gofmethods.R | 18 -- R/gofstatistics.R | 141 ++++++---------- R/knecht.R | 3 R/mtergm.R | 7 build/partial.rdb |binary man/btergm.Rd | 12 + man/chemnet.Rd | 7 man/knecht.Rd | 3 man/mtergm.Rd | 5 tests/testthat/test-btergm.R | 13 - tests/testthat/test-data.R | 2 tests/testthat/test-gof.R | 366 ++++++++++++++++++++++++++++++++++++++++++- 17 files changed, 543 insertions(+), 223 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-04-09 2.0.0
2024-01-08 1.1.0
2023-07-19 1.0.0
2022-06-08 0.2.0
2022-01-12 0.1.0
Title: Interactive R Unit Tests
Description: Simplifies regression tests by comparing objects produced by test
code with earlier versions of those same objects. If objects are unchanged
the tests pass, otherwise execution stops with error details. If in
interactive mode, tests can be reviewed through the provided interactive
environment.
Author: Brodie Gaslam [aut, cre],
Michael https://github.com/MichaelChirico [ctb],
R Core Team [cph]
Maintainer: Brodie Gaslam <brodie.gaslam@yahoo.com>
Diff between unitizer versions 1.4.21 dated 2024-05-18 and 1.4.22 dated 2025-03-18
DESCRIPTION | 14 ++++++++++---- MD5 | 30 +++++++++++++++--------------- NAMESPACE | 10 +++++----- NEWS.md | 7 +++++++ R/conditions.R | 16 ++++++++++++++-- R/deparse.R | 4 +++- R/item.sub.R | 2 +- R/load.R | 2 ++ R/state.compare.R | 9 ++++++--- R/unitizer-package.R | 3 +-- build/vignette.rds |binary inst/doc/u1_intro.R | 18 +++++++++--------- inst/doc/u1_intro.html | 7 ++++--- man/all.equal.condition.Rd | 4 ++-- man/all_eq.Rd | 2 +- man/unitizer.Rd | 18 ++++++++++++++++++ 16 files changed, 98 insertions(+), 48 deletions(-)
Title: Weighted Mean SHAP and CI for Robust Feature Assessment in ML
Grid
Description: This R package introduces Weighted Mean SHapley Additive exPlanations (WMSHAP), an innovative method for calculating SHAP values for a grid of fine-tuned base-learner machine learning models as well as stacked ensembles, a method not previously available due to the common reliance on single best-performing models. By integrating the weighted mean SHAP values from individual base-learners comprising the ensemble or individual base-learners in a tuning grid search, the package weights SHAP contributions according to each model's performance, assessed by multiple either R squared (for both regression and classification models). alternatively, this software also offers weighting SHAP values based on the area under the precision-recall curve (AUCPR), the area under the curve (AUC), and F2 measures for binary classifiers. It further extends this framework to implement weighted confidence intervals for weighted mean SHAP values, offering a more comprehensive and robust feature importance eval [...truncated...]
Author: E. F. Haghish [aut, cre, cph]
Maintainer: E. F. Haghish <haghish@hotmail.com>
Diff between shapley versions 0.4 dated 2024-10-22 and 0.5 dated 2025-03-18
shapley-0.4/shapley/R/shapley.feature.selection.R |only shapley-0.4/shapley/R/shapley.test.R |only shapley-0.4/shapley/R/test.R |only shapley-0.4/shapley/man/figures/best.png |only shapley-0.4/shapley/man/figures/logo.png |only shapley-0.4/shapley/man/figures/logo2.png |only shapley-0.4/shapley/man/figures/logocopy.png |only shapley-0.4/shapley/man/figures/shap.png |only shapley-0.4/shapley/man/figures/shapleylow.png |only shapley-0.4/shapley/man/figures/waffle.png |only shapley-0.4/shapley/man/shapley.feature.selection.Rd |only shapley-0.4/shapley/man/shapley.test.Rd |only shapley-0.4/shapley/man/test.Rd |only shapley-0.5/shapley/DESCRIPTION | 45 ----- shapley-0.5/shapley/MD5 | 49 ++--- shapley-0.5/shapley/NAMESPACE | 5 shapley-0.5/shapley/R/feature.selection.R |only shapley-0.5/shapley/R/feature.test.R |only shapley-0.5/shapley/R/shapley.R | 159 +++++++++--------- shapley-0.5/shapley/R/shapley.domain.R | 46 +---- shapley-0.5/shapley/R/shapley.feature.test.R |only shapley-0.5/shapley/R/shapley.plot.R | 42 +--- shapley-0.5/shapley/R/shapley.table.R |only shapley-0.5/shapley/R/shapley.top.R | 33 ++- shapley-0.5/shapley/README.md | 21 +- shapley-0.5/shapley/man/feature.selection.Rd |only shapley-0.5/shapley/man/feature.test.Rd |only shapley-0.5/shapley/man/figures/best.jpeg |only shapley-0.5/shapley/man/figures/shap.jpeg |only shapley-0.5/shapley/man/figures/shapley.png |binary shapley-0.5/shapley/man/figures/shapley_algorithm.jpg |only shapley-0.5/shapley/man/figures/waffle.jpg |only shapley-0.5/shapley/man/shapley.Rd | 134 +++++++-------- shapley-0.5/shapley/man/shapley.domain.Rd | 28 +-- shapley-0.5/shapley/man/shapley.feature.test.Rd |only shapley-0.5/shapley/man/shapley.plot.Rd | 27 +-- shapley-0.5/shapley/man/shapley.table.Rd |only shapley-0.5/shapley/man/shapley.top.Rd | 23 +- 38 files changed, 284 insertions(+), 328 deletions(-)
Title: Client for 'LaminDB'
Description: Interact with 'LaminDB'. 'LaminDB' is an open-source data
framework for biology. This package allows you to query and download
data from 'LaminDB' instances.
Author: Robrecht Cannoodt [aut, cre] ,
Luke Zappia [aut] ,
Data Intuitive [aut],
Lamin Labs [aut, cph]
Maintainer: Robrecht Cannoodt <robrecht@data-intuitive.com>
Diff between laminr versions 1.0.0 dated 2025-03-10 and 1.0.1 dated 2025-03-18
DESCRIPTION | 22 +++++++++++----------- MD5 | 8 ++++---- R/file_loaders.R | 1 + build/vignette.rds |binary tests/testthat/test-file_loaders.R | 4 ++-- 5 files changed, 18 insertions(+), 17 deletions(-)
Title: Evaluate Function Calls on HPC Schedulers (LSF, SGE, SLURM,
PBS/Torque)
Description: Evaluate arbitrary function calls using workers on HPC schedulers
in single line of code. All processing is done on the network without
accessing the file system. Remote schedulers are supported via SSH.
Author: Michael Schubert [aut, cre, cph]
,
ZeroMQ authors [aut, cph]
Maintainer: Michael Schubert <mschu.dev@gmail.com>
Diff between clustermq versions 0.9.7 dated 2025-02-09 and 0.9.8 dated 2025-03-18
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 5 +++++ R/qsys_local.r | 4 +++- R/qsys_lsf.r | 4 +++- R/qsys_multicore.r | 4 +++- R/qsys_multiprocess.r | 4 +++- R/qsys_sge.r | 12 +++++++++--- R/qsys_slurm.r | 4 +++- R/qsys_ssh.r | 4 +++- build/vignette.rds |binary src/cppzmq/zmq.hpp | 8 ++++---- 12 files changed, 50 insertions(+), 27 deletions(-)
Title: Model Butcher
Description: Provides a set of S3 generics to axe components of fitted
model objects and help reduce the size of model objects saved to disk.
Author: Joyce Cahoon [aut] ,
Davis Vaughan [aut],
Max Kuhn [aut],
Alex Hayes [aut],
Julia Silge [cre, aut] ,
Posit, PBC [cph, fnd]
Maintainer: Julia Silge <julia.silge@posit.co>
Diff between butcher versions 0.3.4 dated 2024-04-11 and 0.3.5 dated 2025-03-18
butcher-0.3.4/butcher/R/nested_model_fit.R |only butcher-0.3.4/butcher/build/butcher.pdf |only butcher-0.3.4/butcher/man/axe-nested_model_fit.Rd |only butcher-0.3.4/butcher/tests/testthat/test-nested_model_fit.R |only butcher-0.3.5/butcher/DESCRIPTION | 19 - butcher-0.3.5/butcher/MD5 | 34 +-- butcher-0.3.5/butcher/NAMESPACE | 5 butcher-0.3.5/butcher/NEWS.md | 26 +- butcher-0.3.5/butcher/R/utilities.R | 4 butcher-0.3.5/butcher/README.md | 10 butcher-0.3.5/butcher/build/stage23.rdb |binary butcher-0.3.5/butcher/build/vignette.rds |binary butcher-0.3.5/butcher/inst/doc/adding-models-to-butcher.R | 118 +++++------ butcher-0.3.5/butcher/inst/doc/adding-models-to-butcher.html | 3 butcher-0.3.5/butcher/inst/doc/available-axe-methods.R | 6 butcher-0.3.5/butcher/inst/doc/available-axe-methods.Rmd | 6 butcher-0.3.5/butcher/inst/doc/available-axe-methods.html | 76 +++---- butcher-0.3.5/butcher/inst/doc/butcher.R | 4 butcher-0.3.5/butcher/inst/doc/butcher.html | 5 butcher-0.3.5/butcher/vignettes/available-axe-methods.Rmd | 6 20 files changed, 153 insertions(+), 169 deletions(-)
Title: Systematic Screening of Study Data for Subgroup Effects
Description: Identifying outcome relevant subgroups has now become as simple as possible!
The formerly lengthy and tedious search for the needle in a haystack will be replaced by a single, comprehensive and coherent presentation.
The central result of a subgroup screening is a diagram in which each single dot stands for a subgroup. The diagram may show thousands of them. The position of the dot in the diagram is determined by the
sample size of the subgroup and the statistical measure of the treatment effect in that subgroup. The sample size is shown on the horizontal axis while the treatment effect is displayed on the vertical axis. Furthermore, the diagram shows the line of no effect and the overall study results. For small subgroups, which are found on the left side of the plot, larger random deviations from the mean study effect are expected, while for larger subgroups only small deviations from the study mean can be expected to be chance findings.
So for a study with no conspicuous subgroup ef [...truncated...]
Author: Bodo Kirsch [aut, cre],
Steffen Jeske [aut],
Julia Eichhorn [aut],
Susanne Lippert [aut],
Thomas Schmelter [aut],
Christoph Muysers [aut],
Hermann Kulmann [aut]
Maintainer: Bodo Kirsch <kirschbodo@gmail.com>
Diff between subscreen versions 3.0.7 dated 2022-05-12 and 4.0.1 dated 2025-03-18
DESCRIPTION | 68 MD5 | 118 NAMESPACE | 24 NEWS.md | 330 R/fct_createColorVector.R |only R/fct_createFilteredTable.R |only R/fct_createParentTable.R |only R/fct_createPlot_points_data_complement.R |only R/fct_displayOptionsPanel.R |only R/fct_subscreen_interactionPlot.R |only R/fct_subscreen_mosaicPlot.R |only R/fct_subscreen_parents.R |only R/fct_variableOptionsPanel.R |only R/importance.R |only R/mod_asmus_v2.R |only R/mod_bubble.R |only R/mod_color.R |only R/mod_comparer.R |only R/mod_graph.R |only R/mod_legend.R |only R/mod_mosaic.R |only R/mod_upload_tab.R |only R/mod_variable_importance.R |only R/results.R |only R/results_complement_true.R |only R/results_factorial_complement_true.R |only R/results_factorial_true.R |only R/subscreencalc.R | 912 +- R/subscreenshow.R | 168 R/subscreenvi.R | 231 R/utils_createCombinationMatrix.R |only R/utils_different_hues.R |only R/utils_font_color.R |only R/utils_is_integer0.R |only R/utils_pseudo_contexts.R |only R/utils_pseudo_func.R |only R/utils_roundDownNice.R |only R/utils_roundUpNice.R |only R/utils_shinyInput.R |only R/utils_shinyInput_remove.R |only README.md |only build/vignette.rds |binary data |only inst/doc/subscreen.html | 1562 +++ inst/doc/subscreen.rmd | 886 ++ inst/shiny-app/subscreen/app.R | 7774 ++++--------------- inst/www/SubgroupExplorer_Logo_final.png |only inst/www/SubgroupExplorer_Logo_final_inverted.png |only inst/www/sge_style.css |only inst/www/sge_style_dark.css |only inst/www/subscreen_asmus_multiplicity_0.1.png |only inst/www/subscreen_asmus_multiplicity_0.25.png |only inst/www/subscreen_asmus_multiplicity_0.5.png |only inst/www/subscreen_logo_inverted.png |only inst/www/subscreencalc_verbose.png |only inst/www/subscreenshow_ASMUS.png |only inst/www/subscreenshow_ASMUS_include_option.png |only inst/www/subscreenshow_ASMUS_page2.png |only inst/www/subscreenshow_ASMUS_rel_rem_options.png |only inst/www/subscreenshow_ASMUS_w_text.png |only inst/www/subscreenshow_Explorer_Graph.png |only inst/www/subscreenshow_Explorer_Plot_gold.png |only inst/www/subscreenshow_Explorer_Plot_green.png |only inst/www/subscreenshow_Explorer_Plot_red.png |only inst/www/subscreenshow_Explorer_Plot_red_hover.png |only inst/www/subscreenshow_Explorer_filter_green.png |only inst/www/subscreenshow_Explorer_interaction_plot.png |only inst/www/subscreenshow_Explorer_table_selected.png |only inst/www/subscreenshow_Upload_demo_info.png |only inst/www/subscreenshow_Upload_start.png |only inst/www/subscreenshow_colourOptions.png |only inst/www/subscreenshow_comparer.png |only inst/www/subscreenshow_comparer_clicked.png |only inst/www/subscreenshow_displayOptions.png |only inst/www/subscreenshow_importance.png |only inst/www/subscreenshow_mosaic.png |only inst/www/subscreenshow_mosaic_2f.png |only inst/www/subscreenshow_mosaic_2factors.png |only inst/www/subscreenshow_mosaic_3f.png |only inst/www/subscreenshow_mosaic_3factors.png |only inst/www/subscreenshow_variableOptions.png |only man/createFilteredTable.Rd |only man/createParentTable.Rd |only man/createPlot_points_data_complement.Rd |only man/displayOptionsPanel.Rd |only man/importance.Rd |only man/interaction_plot2.Rd |only man/parents.Rd |only man/pseudo_contexts.Rd |only man/pseudo_func.Rd |only man/results.Rd |only man/results_complement_true.Rd |only man/results_factorial_complement_true.Rd |only man/results_factorial_true.Rd |only man/subscreen_mosaicPlot.Rd |only man/subscreencalc.Rd | 295 man/subscreenshow.Rd | 19 man/subscreenvi.Rd | 128 man/variableOptionsPanel.Rd |only vignettes/subscreen.rmd | 886 ++ 100 files changed, 6428 insertions(+), 6973 deletions(-)
Title: Spatially Explicit Capture-Recapture
Description: Functions to estimate the density and size of a spatially
distributed animal population sampled with an array of passive detectors,
such as traps, or by searching polygons or transects. Models incorporating
distance-dependent detection are fitted by maximizing the likelihood.
Tools are included for data manipulation and model selection.
Author: Murray Efford [aut, cre] ,
Philipp Jund [ctb] ,
David Fletcher [ctb] ,
Yan Ru Choo [ctb]
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between secr versions 5.2.0 dated 2025-01-24 and 5.2.1 dated 2025-03-18
DESCRIPTION | 8 +++--- MD5 | 52 ++++++++++++++++++++++---------------------- NAMESPACE | 3 +- NEWS | 11 +++++++++ R/fastsecrloglik.R | 20 +++++++++++++--- R/generalsecrloglik.R | 18 ++++++++++----- R/secr.fit.R | 51 ++++++++++++++++++++++++++++++++++++------- R/secr.refit.R |only R/sim.detect.R | 27 +++++++++++++++------- R/utility.R | 32 ++++++++++++++++++++++++--- inst/doc/secr-datainput.pdf |binary inst/doc/secr-overview.pdf |binary man/AIC.secr.Rd | 6 ++--- man/MCgof.Rd | 4 +-- man/RSE.Rd | 2 - man/circular.Rd | 2 - man/derivedMS.Rd | 6 ++--- man/details.Rd | 17 +++++++++++++- man/detectfn.Rd | 4 +-- man/empirical.Rd | 14 +++++------ man/esaPlot.Rd | 2 - man/fxi.Rd | 4 +-- man/modelAverage.Rd | 4 +-- man/rbind.capthist.Rd | 2 - man/secr-package.Rd | 4 +-- man/secr.fit.Rd | 7 ++++- man/secr.refit.Rd |only man/utility.Rd | 4 +-- 28 files changed, 212 insertions(+), 92 deletions(-)
Title: Meta-Analysis of Medians
Description: Implements several methods to meta-analyze studies that report the
sample median of the outcome. The methods described by
McGrath et al. (2019) <doi:10.1002/sim.8013>,
Ozturk and Balakrishnan (2020) <doi:10.1002/sim.8738>, and
McGrath et al. (2020a) <doi:10.1002/bimj.201900036> can be
applied to directly meta-analyze the median or difference of medians between
groups. Additionally, a number of methods (e.g., McGrath et al. (2020b)
<doi:10.1177/0962280219889080>, Cai et al. (2021)
<doi:10.1177/09622802211047348>, and McGrath et al. (2023)
<doi:10.1177/09622802221139233>) are implemented to estimate
study-specific (difference of) means and their standard errors in order to
estimate the pooled (difference of) means. Methods for meta-analyzing median
survival times (McGrath et al. (2025) <doi:10.48550/arXiv.2503.03065>) are
also implemented. See McGrath et al. (2024) <doi:10.1002/jrsm.1686> for a
detailed guide on using the package.
Author: Sean McGrath [aut, cre] ,
XiaoFei Zhao [aut],
Stephan Katzenschlager [aut],
Omer Ozturk [aut],
Renata Iskander [ctb],
Russell Steele [aut],
Andrea Benedetti [aut]
Maintainer: Sean McGrath <sean.mcgrath514@gmail.com>
Diff between metamedian versions 1.1.1 dated 2023-12-13 and 1.2.1 dated 2025-03-18
metamedian-1.1.1/metamedian/R/print.qe.fit.R |only metamedian-1.1.1/metamedian/R/qe.fit.R |only metamedian-1.2.1/metamedian/DESCRIPTION | 33 + metamedian-1.2.1/metamedian/MD5 | 41 +- metamedian-1.2.1/metamedian/NAMESPACE | 1 metamedian-1.2.1/metamedian/NEWS.md | 11 metamedian-1.2.1/metamedian/R/data.R | 27 + metamedian-1.2.1/metamedian/R/describe_studies.R | 8 metamedian-1.2.1/metamedian/R/metamean.R | 5 metamedian-1.2.1/metamedian/R/metamedian.R | 2 metamedian-1.2.1/metamedian/R/metamedian_survival.R |only metamedian-1.2.1/metamedian/R/qe.R | 2 metamedian-1.2.1/metamedian/R/qe.study.level.R | 8 metamedian-1.2.1/metamedian/README.md | 172 +++++++++- metamedian-1.2.1/metamedian/data/dat.lung.rda |only metamedian-1.2.1/metamedian/inst |only metamedian-1.2.1/metamedian/man/dat.lung.Rd |only metamedian-1.2.1/metamedian/man/describe_studies.Rd | 8 metamedian-1.2.1/metamedian/man/figures |only metamedian-1.2.1/metamedian/man/metamean.Rd | 2 metamedian-1.2.1/metamedian/man/metamedian-defunct.Rd | 4 metamedian-1.2.1/metamedian/man/metamedian.Rd | 2 metamedian-1.2.1/metamedian/man/metamedian_survival.Rd |only metamedian-1.2.1/metamedian/man/qe.Rd | 2 metamedian-1.2.1/metamedian/man/qe.study.level.Rd | 8 metamedian-1.2.1/metamedian/tests/testthat/test-metamedian_survival.R |only 26 files changed, 266 insertions(+), 70 deletions(-)
Title: Tools for Exploring Multivariate Data via ICS/ICA
Description: Implementation of Tyler, Critchley, Duembgen and Oja's (JRSS B, 2009,
<doi:10.1111/j.1467-9868.2009.00706.x>) and Oja, Sirkia and Eriksson's
(AJS, 2006, <https://www.ajs.or.at/index.php/ajs/article/view/vol35,%20no2%263%20-%207>) method of two different
scatter matrices to obtain an invariant coordinate system or independent
components, depending on the underlying assumptions.
Author: Klaus Nordhausen [aut, cre] ,
Andreas Alfons [aut] ,
Aurore Archimbaud [aut] ,
Hannu Oja [aut] ,
Anne Ruiz-Gazen [aut] ,
David E. Tyler [aut]
Maintainer: Klaus Nordhausen <klausnordhausenR@gmail.com>
Diff between ICS versions 1.4-1 dated 2023-09-21 and 1.4-2 dated 2025-03-18
DESCRIPTION | 8 MD5 | 20 NEWS | 5 R/ICS_S3.R | 2561 ++++++++++++++++++------------------- R/covW.R | 130 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/ICS.pdf |binary inst/doc/paper |only man/ICS-S3.Rd | 3 tests/testthat/test-ICS_S3_tests.R | 332 ++-- 11 files changed, 1536 insertions(+), 1523 deletions(-)
More information about DataSimilarity at CRAN
Permanent link
Title: Split-Apply-Combine with Dynamic Groups
Description: Estimate group aggregates, where one can set user-defined conditions
that each group of records must satisfy to be suitable for aggregation. If
a group of records is not suitable, it is expanded using a collapsing scheme
defined by the user. A paper on this package was published in the Journal
of Statistical Software <doi:10.18637/jss.v112.i04>.
Author: Mark van der Loo [aut, cre]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between accumulate versions 0.9.3 dated 2023-09-22 and 1.0.0 dated 2025-03-18
DESCRIPTION | 11 MD5 | 15 - NEWS | 3 R/accumulate.R | 5 build/vignette.rds |binary inst/CITATION |only inst/doc/introduction.html | 651 +++++++++++++++++++++++++-------------------- man/accumulate.Rd | 4 vignettes/style.css | 39 -- 9 files changed, 406 insertions(+), 322 deletions(-)
Title: Access Data from the Oregon State Prism Climate Project
Description: Allows users to access the Oregon State Prism climate data
(<https://prism.nacse.org/>). Using the web service API data
can easily downloaded in bulk and loaded into R for spatial analysis.
Some user friendly visualizations are also provided.
Author: Hart Edmund [aut, ccp],
Kendon Bell [aut],
Alan Butler [ctb, cre]
Maintainer: Alan Butler <rabutler@usbr.gov>
Diff between prism versions 0.2.1 dated 2023-10-18 and 0.2.2 dated 2025-03-18
DESCRIPTION | 8 MD5 | 92 ++-- NEWS.md | 15 R/get_prism_annual.R | 36 - R/get_prism_dailys.R | 17 R/get_prism_monthlys.R | 33 - R/get_prism_normals.R | 113 ++++- R/pd_get.R | 68 ++- R/pd_get_md.R | 9 R/pd_get_station_md.R | 15 R/pd_stack.R | 4 R/prism_archive_clean.R | 6 R/prism_archive_ls.R | 2 R/prism_archive_subset.R | 76 ++- R/prism_archive_verify.R | 9 R/prism_set_dl_dir.R | 15 R/prism_webservice.R | 44 +- R/utility_functions.R | 85 ++-- README.md | 93 +++- build/vignette.rds |binary inst/doc/prism.R | 212 +++++----- inst/doc/prism.html | 4 man/figures/README-quick_plot-1.png |binary man/figures/README-raster_math-1.png |binary man/get_prism_data.Rd | 39 + man/pd_get.Rd | 35 + man/pd_get_md.Rd | 9 man/pd_get_station_md.Rd | 7 man/pd_stack.Rd | 5 man/prism_archive_clean.Rd | 11 man/prism_archive_subset.Rd | 9 man/prism_archive_verify.Rd | 12 man/prism_set_dl_dir.Rd | 15 tests/testthat/prism_test/PRISM_ppt_30yr_normal_4kmD1_0301_bil.zip |only tests/testthat/prism_test/README.md | 5 tests/testthat/setup-prism.R | 4 tests/testthat/teardown-prism.R | 4 tests/testthat/test-files_download.R | 67 ++- tests/testthat/test-gen_dates.R | 87 ++-- tests/testthat/test-get_prism_.R |only tests/testthat/test-get_prism_normals.R | 62 ++ tests/testthat/test-pd_get.R | 26 + tests/testthat/test-pd_get_md.R | 16 tests/testthat/test-pd_get_station_md.R | 5 tests/testthat/test-prism_archive_clean.R | 10 tests/testthat/test-prism_archive_ls.R | 2 tests/testthat/test-prism_archive_subset.R | 91 +++- tests/testthat/test-prism_archive_verify.R | 2 48 files changed, 1062 insertions(+), 417 deletions(-)
Title: Visualize Simon's Two-Stage Design
Description: To visualize the probabilities of early termination, fail
and success of Simon's two-stage design. To evaluate and
visualize the operating characteristics of Simon's two-stage
design.
Author: Tingting Zhan [aut, cre]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between VisualizeSimon2Stage versions 0.1.6 dated 2024-10-27 and 0.1.7 dated 2025-03-18
VisualizeSimon2Stage-0.1.6/VisualizeSimon2Stage/R/Simon_oc.R |only VisualizeSimon2Stage-0.1.6/VisualizeSimon2Stage/R/Simon_pr.R |only VisualizeSimon2Stage-0.1.6/VisualizeSimon2Stage/R/autoplot.ph2simon.R |only VisualizeSimon2Stage-0.1.6/VisualizeSimon2Stage/R/ph2simon_etc.R |only VisualizeSimon2Stage-0.1.6/VisualizeSimon2Stage/man/Simon_oc.Rd |only VisualizeSimon2Stage-0.1.6/VisualizeSimon2Stage/man/Simon_pr.Rd |only VisualizeSimon2Stage-0.1.6/VisualizeSimon2Stage/man/Sprintf.Simon_oc.Rd |only VisualizeSimon2Stage-0.1.6/VisualizeSimon2Stage/man/Sprintf.ph2simon.Rd |only VisualizeSimon2Stage-0.1.6/VisualizeSimon2Stage/man/autoplot.ph2simon.Rd |only VisualizeSimon2Stage-0.1.6/VisualizeSimon2Stage/man/show-Simon_oc-method.Rd |only VisualizeSimon2Stage-0.1.6/VisualizeSimon2Stage/man/show-Simon_pr-method.Rd |only VisualizeSimon2Stage-0.1.6/VisualizeSimon2Stage/man/summary.ph2simon.Rd |only VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/DESCRIPTION | 29 ++-- VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/MD5 | 50 ++++---- VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/NAMESPACE | 52 +++++--- VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/NEWS.md | 2 VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/R/0PACKAGE.R | 27 ++++ VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/R/0S4.R |only VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/R/Sprintf.R |only VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/R/autoplot.R |only VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/R/ph2simon4.R |only VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/R/print.R |only VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/R/r_simon.R | 59 +++++++--- VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/R/show.R |only VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/R/simon_oc.R |only VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/R/simon_pr.R |only VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/R/summary.R |only VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/README.md |only VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/build/partial.rdb |binary VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/inst |only VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/man/Sprintf.simon_oc.Rd |only VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/man/Sprintf_ph2simon.Rd |only VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/man/VisualizeSimon2Stage-package.Rd | 29 ++++ VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/man/gg_ph2simon.Rd |only VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/man/ph2simon4.Rd |only VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/man/print_ph2simon.Rd | 9 - VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/man/r_simon.Rd | 47 +++++-- VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/man/show_simon.Rd |only VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/man/simon_oc.Rd |only VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/man/simon_pr.Rd |only VisualizeSimon2Stage-0.1.7/VisualizeSimon2Stage/man/summary_ph2simon.Rd |only 41 files changed, 209 insertions(+), 95 deletions(-)
More information about VisualizeSimon2Stage at CRAN
Permanent link
Title: Parsimonious Gaussian Mixture Models
Description: Carries out model-based clustering or classification using parsimonious Gaussian mixture models. McNicholas and Murphy (2008) <doi:10.1007/s11222-008-9056-0>, McNicholas (2010) <doi:10.1016/j.jspi.2009.11.006>, McNicholas and Murphy (2010) <doi:10.1093/bioinformatics/btq498>, McNicholas et al. (2010) <doi:10.1016/j.csda.2009.02.011>.
Author: Paul D. McNicholas [aut, cre] ,
Aisha ElSherbiny [aut],
K. Raju Jampani [ctb],
Aaron F. McDaid [aut],
T. Brendan Murphy [aut],
Larry Banks [ctb]
Maintainer: Paul D. McNicholas <mcnicholas@math.mcmaster.ca>
Diff between pgmm versions 1.2.7 dated 2023-09-25 and 1.2.8 dated 2025-03-18
ChangeLog | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/pgmmEM.R | 6 +++--- man/pgmm.Rd | 4 ++-- 5 files changed, 17 insertions(+), 13 deletions(-)
Title: A General Framework for Combining Ecosystem Models
Description: Fit and sample from the ensemble model described in Spence et al (2018): "A general framework for combining ecosystem models"<doi:10.1111/faf.12310>.
Author: Michael A. Spence [aut, cre] ,
James A. Martindale [aut] ,
Michael J. Thomson [aut] ,
Thomas I. J. Bartos [aut]
Maintainer: Michael A. Spence <michael.spence@cefas.gov.uk>
Diff between EcoEnsemble versions 1.1.0 dated 2024-08-19 and 1.1.2 dated 2025-03-18
DESCRIPTION | 14 MD5 | 48 +- NEWS.md | 40 +- R/EcoEnsemble-package.R | 54 +- R/EnsembleData-class.R | 2 R/fit_ensemble.R | 27 + build/vignette.rds |binary inst/doc/BetaConjugatePrior.R | 28 - inst/doc/BetaConjugatePrior.html | 260 ++++++------- inst/doc/EcoEnsemble.R | 14 inst/doc/EcoEnsemble.html | 114 +++--- inst/doc/ExploringPriors.R | 2 inst/doc/ExploringPriors.html | 268 +++++++------- inst/doc/IncludingDrivers.R | 16 inst/doc/SyntheticData.R | 2 inst/doc/SyntheticData.html | 318 ++++++++--------- inst/stan/ensemble_model_hierarchical_withdrivers.stan | 4 inst/stan/ensemble_model_withdrivers.stan | 4 inst/stan/ensemble_prior_hierarchical_withdrivers.stan | 4 inst/stan/ensemble_prior_withdrivers.stan | 4 man/EnsembleData.Rd | 2 man/fit_ensemble_model.Rd | 2 man/get_mcmc_ensemble_model.Rd | 4 man/sample_prior.Rd | 2 tests/testthat/test-get_stanmodel.R | 5 25 files changed, 636 insertions(+), 602 deletions(-)
Title: Read/Write, Analyze, and Visualize 'BIOM' Data
Description: A toolkit for working with Biological Observation Matrix ('BIOM') files.
Read/write all 'BIOM' formats. Compute rarefaction, alpha diversity, and
beta diversity (including 'UniFrac'). Summarize counts by taxonomic level.
Subset based on metadata. Generate visualizations and statistical analyses.
CPU intensive operations are coded in C for speed.
Author: Daniel P. Smith [aut, cre] ,
Alkek Center for Metagenomics and Microbiome Research [cph, fnd]
Maintainer: Daniel P. Smith <dansmith01@gmail.com>
Diff between rbiom versions 2.1.1 dated 2025-03-10 and 2.1.2 dated 2025-03-18
DESCRIPTION | 8 +- MD5 | 8 +- R/corrplot.r | 13 ++-- R/rare_multiplot.r | 168 ++++++++++++++++++++++++++--------------------------- R/write_biom.r | 8 +- 5 files changed, 106 insertions(+), 99 deletions(-)
Title: Extra 'Recipes' for Text Processing
Description: Converting text to numerical features requires specifically
created procedures, which are implemented as steps according to the
'recipes' package. These steps allows for tokenization, filtering,
counting (tf and tfidf) and feature hashing.
Author: Emil Hvitfeldt [aut, cre] ,
Michael W. Kearney [cph] ,
Posit Software, PBC [cph, fnd]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between textrecipes versions 1.0.7 dated 2025-01-23 and 1.1.0 dated 2025-03-18
DESCRIPTION | 12 MD5 | 140 ++-- NAMESPACE | 5 NEWS.md | 10 R/aaa.R | 10 R/clean_levels.R | 28 R/clean_names.R | 24 R/count_functions.R | 99 ++- R/dummy_hash.R | 99 ++- R/import-standalone-obj-type.R | 107 +-- R/import-standalone-types-check.R | 293 +++++----- R/lda.R | 59 +- R/lemma.R | 28 R/ngram-c.R | 6 R/ngram.R | 43 - R/pos_filter.R | 20 R/sequence_onehot.R | 72 +- R/show_tokens.R | 2 R/stem.R | 30 - R/stopwords.R | 46 + R/text_normalization.R | 29 R/textfeature.R | 51 + R/texthash.R | 106 ++- R/textrecipes-package.R | 1 R/tf.R | 159 ++++- R/tfidf.R | 130 +++- R/tokenfilter.R | 75 +- R/tokenize.R | 79 +- R/tokenize_bpe.R | 49 + R/tokenize_sentencepiece.R | 55 + R/tokenize_wordpiece.R | 37 - R/tokenizer-sentencepiece.R | 3 R/tokenizer-udpipe.R | 3 R/tokenlist.R | 30 - R/tokenmerge.R | 46 - R/untokenize.R | 20 R/word_embeddings.R | 71 +- inst/doc/cookbook---using-more-complex-recipes-involving-text.html | 4 man/step_dummy_hash.Rd | 19 man/step_texthash.Rd | 19 man/step_tf.Rd | 26 man/step_tfidf.Rd | 19 tests/embeddings/embeddings-references.R | 34 - tests/testthat/_snaps/tokenmerge.md | 8 tests/testthat/test-clean_levels.R | 42 - tests/testthat/test-clean_names.R | 36 - tests/testthat/test-dummy_hash.R | 199 ++++-- tests/testthat/test-lda.R | 101 +-- tests/testthat/test-lemma.R | 44 - tests/testthat/test-ngram.R | 89 ++- tests/testthat/test-pos_filter.R | 46 - tests/testthat/test-s3-methods.R | 14 tests/testthat/test-sequence_onehot.R | 192 ++++-- tests/testthat/test-stem.R | 46 - tests/testthat/test-stopwords.R | 50 - tests/testthat/test-text_normalization.R | 28 tests/testthat/test-textfeature.R | 123 ++-- tests/testthat/test-texthash.R | 147 +++-- tests/testthat/test-tf.R | 264 ++++++--- tests/testthat/test-tfidf.R | 189 +++++- tests/testthat/test-tokenfilter.R | 48 - tests/testthat/test-tokenize.R | 51 - tests/testthat/test-tokenize_bpe.R | 116 ++- tests/testthat/test-tokenize_sentencepiece.R | 136 +++- tests/testthat/test-tokenize_wordpiece.R | 34 - tests/testthat/test-tokenizer-spacyr.R | 20 tests/testthat/test-tokenizer-tokenizersbpe.R | 91 ++- tests/testthat/test-tokenlist.R | 65 +- tests/testthat/test-tokenmerge.R | 54 - tests/testthat/test-untokenize.R | 42 - tests/testthat/test-word_embeddings.R | 140 ++-- 71 files changed, 3017 insertions(+), 1596 deletions(-)
Title: NNG (Nanomsg Next Gen) Lightweight Messaging Library
Description: R binding for NNG (Nanomsg Next Gen), a successor to ZeroMQ. NNG is
a socket library for reliable, high-performance messaging over in-process,
IPC, TCP, WebSocket and secure TLS transports. Implements 'Scalability
Protocols', a standard for common communications patterns including
publish/subscribe, request/reply and service discovery. As its own threaded
concurrency framework, provides a toolkit for asynchronous programming and
distributed computing. Intuitive 'aio' objects resolve automatically when
asynchronous operations complete, and synchronisation primitives allow R to
wait upon events signalled by concurrent threads.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph],
R Consortium [fnd]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between nanonext versions 1.5.1 dated 2025-02-16 and 1.5.2 dated 2025-03-18
nanonext-1.5.1/nanonext/src/nng-110.tar.xz |only nanonext-1.5.2/nanonext/DESCRIPTION | 6 nanonext-1.5.2/nanonext/MD5 | 174 +-- nanonext-1.5.2/nanonext/NAMESPACE | 2 nanonext-1.5.2/nanonext/NEWS.md | 10 nanonext-1.5.2/nanonext/R/aio.R | 189 +-- nanonext-1.5.2/nanonext/R/context.R | 85 - nanonext-1.5.2/nanonext/R/docs.R | 504 ++++------ nanonext-1.5.2/nanonext/R/listdial.R | 77 - nanonext-1.5.2/nanonext/R/messenger.R | 18 nanonext-1.5.2/nanonext/R/nano.R | 75 - nanonext-1.5.2/nanonext/R/nanonext-package.R | 54 - nanonext-1.5.2/nanonext/R/ncurl.R | 143 +- nanonext-1.5.2/nanonext/R/opts.R | 78 - nanonext-1.5.2/nanonext/R/sendrecv.R | 106 +- nanonext-1.5.2/nanonext/R/socket.R | 66 - nanonext-1.5.2/nanonext/R/stream.R | 24 nanonext-1.5.2/nanonext/R/sync.R | 126 +- nanonext-1.5.2/nanonext/R/tls.R | 57 - nanonext-1.5.2/nanonext/R/utils.R | 137 +- nanonext-1.5.2/nanonext/README.md | 15 nanonext-1.5.2/nanonext/build/vignette.rds |binary nanonext-1.5.2/nanonext/configure | 34 nanonext-1.5.2/nanonext/configure.win | 4 nanonext-1.5.2/nanonext/inst/doc/nanonext.html | 26 nanonext-1.5.2/nanonext/man/as.promise.ncurlAio.Rd | 12 nanonext-1.5.2/nanonext/man/as.promise.recvAio.Rd | 12 nanonext-1.5.2/nanonext/man/call_aio.Rd | 41 nanonext-1.5.2/nanonext/man/close.Rd | 7 nanonext-1.5.2/nanonext/man/collect_aio.Rd | 8 nanonext-1.5.2/nanonext/man/context.Rd | 13 nanonext-1.5.2/nanonext/man/cv.Rd | 47 nanonext-1.5.2/nanonext/man/dial.Rd | 27 nanonext-1.5.2/nanonext/man/dot-advance.Rd | 6 nanonext-1.5.2/nanonext/man/dot-context.Rd | 10 nanonext-1.5.2/nanonext/man/dot-interrupt.Rd | 7 nanonext-1.5.2/nanonext/man/dot-keep.Rd | 8 nanonext-1.5.2/nanonext/man/dot-mark.Rd | 7 nanonext-1.5.2/nanonext/man/dot-unresolved.Rd | 22 nanonext-1.5.2/nanonext/man/grapes-twiddle-greater-than-grapes.Rd | 26 nanonext-1.5.2/nanonext/man/is_aio.Rd | 18 nanonext-1.5.2/nanonext/man/is_error_value.Rd | 5 nanonext-1.5.2/nanonext/man/listen.Rd | 25 nanonext-1.5.2/nanonext/man/messenger.Rd | 10 nanonext-1.5.2/nanonext/man/monitor.Rd | 10 nanonext-1.5.2/nanonext/man/msleep.Rd | 10 nanonext-1.5.2/nanonext/man/nano.Rd | 86 - nanonext-1.5.2/nanonext/man/nanonext-package.Rd | 40 nanonext-1.5.2/nanonext/man/ncurl.Rd | 44 nanonext-1.5.2/nanonext/man/ncurl_aio.Rd | 56 - nanonext-1.5.2/nanonext/man/ncurl_session.Rd | 47 nanonext-1.5.2/nanonext/man/nng_error.Rd | 6 nanonext-1.5.2/nanonext/man/nng_version.Rd | 4 nanonext-1.5.2/nanonext/man/opt.Rd | 370 +++---- nanonext-1.5.2/nanonext/man/parse_url.Rd | 37 nanonext-1.5.2/nanonext/man/pipe_notify.Rd | 31 nanonext-1.5.2/nanonext/man/protocols.Rd | 164 +-- nanonext-1.5.2/nanonext/man/random.Rd | 10 nanonext-1.5.2/nanonext/man/reap.Rd | 6 nanonext-1.5.2/nanonext/man/recv.Rd | 49 nanonext-1.5.2/nanonext/man/recv_aio.Rd | 43 nanonext-1.5.2/nanonext/man/reply.Rd | 42 nanonext-1.5.2/nanonext/man/request.Rd | 65 - nanonext-1.5.2/nanonext/man/send.Rd | 63 - nanonext-1.5.2/nanonext/man/send_aio.Rd | 49 nanonext-1.5.2/nanonext/man/serial_config.Rd | 18 nanonext-1.5.2/nanonext/man/socket.Rd | 61 - nanonext-1.5.2/nanonext/man/start.Rd | 12 nanonext-1.5.2/nanonext/man/stat.Rd | 42 nanonext-1.5.2/nanonext/man/status_code.Rd | 6 nanonext-1.5.2/nanonext/man/stop_aio.Rd | 17 nanonext-1.5.2/nanonext/man/stream.Rd | 16 nanonext-1.5.2/nanonext/man/subscribe.Rd | 8 nanonext-1.5.2/nanonext/man/survey_time.Rd | 12 nanonext-1.5.2/nanonext/man/tls_config.Rd | 17 nanonext-1.5.2/nanonext/man/transports.Rd | 336 +++--- nanonext-1.5.2/nanonext/man/unresolved.Rd | 14 nanonext-1.5.2/nanonext/man/write_cert.Rd | 23 nanonext-1.5.2/nanonext/src/aio.c | 70 + nanonext-1.5.2/nanonext/src/core.c | 90 - nanonext-1.5.2/nanonext/src/init.c | 3 nanonext-1.5.2/nanonext/src/mbedtls-362.tar.xz |binary nanonext-1.5.2/nanonext/src/nanonext.h | 21 nanonext-1.5.2/nanonext/src/ncurl.c | 22 nanonext-1.5.2/nanonext/src/nng-110-2.tar.xz |only nanonext-1.5.2/nanonext/src/proto.c | 14 nanonext-1.5.2/nanonext/src/sync.c | 20 nanonext-1.5.2/nanonext/src/thread.c | 2 nanonext-1.5.2/nanonext/tests/tests.R | 7 89 files changed, 2109 insertions(+), 2275 deletions(-)
Title: Weekly Hass Avocado Sales Summary
Description: Provides a weekly summary of Hass Avocado sales for the
contiguous US from January 2017 through December 20204.
See the package website for more information, documentation,
and examples. Data source: Haas Avocado Board
<https://hassavocadoboard.com/category-data/>.
Author: Nikhil Agarwal [aut, cre]
Maintainer: Nikhil Agarwal <gitnik@niks.me>
Diff between avocado versions 0.1.0 dated 2020-12-18 and 0.2.0 dated 2025-03-18
avocado-0.1.0/avocado/data/hass.rda |only avocado-0.1.0/avocado/inst/doc/a_intro.R |only avocado-0.1.0/avocado/inst/doc/a_intro.Rmd |only avocado-0.1.0/avocado/inst/doc/a_intro.html |only avocado-0.1.0/avocado/inst/doc/b_analyze-hass-region.R |only avocado-0.1.0/avocado/inst/doc/b_analyze-hass-region.Rmd |only avocado-0.1.0/avocado/inst/doc/b_analyze-hass-region.html |only avocado-0.1.0/avocado/inst/doc/b_analyze-hass.R |only avocado-0.1.0/avocado/inst/doc/b_analyze-hass.Rmd |only avocado-0.1.0/avocado/inst/doc/b_analyze-hass.html |only avocado-0.1.0/avocado/man/hass.Rd |only avocado-0.1.0/avocado/vignettes/a_intro.Rmd |only avocado-0.1.0/avocado/vignettes/b_analyze-hass-region.Rmd |only avocado-0.1.0/avocado/vignettes/b_analyze-hass.Rmd |only avocado-0.2.0/avocado/DESCRIPTION | 18 avocado-0.2.0/avocado/MD5 | 48 - avocado-0.2.0/avocado/NEWS.md | 10 avocado-0.2.0/avocado/R/data.R | 92 +-- avocado-0.2.0/avocado/README.md | 89 ++- avocado-0.2.0/avocado/build/vignette.rds |binary avocado-0.2.0/avocado/data/hass_market.rda |only avocado-0.2.0/avocado/data/hass_region.rda |binary avocado-0.2.0/avocado/data/hass_usa.rda |binary avocado-0.2.0/avocado/inst/doc/avocado.R |only avocado-0.2.0/avocado/inst/doc/avocado.Rmd |only avocado-0.2.0/avocado/inst/doc/avocado.html |only avocado-0.2.0/avocado/inst/doc/b_analyze-hass-cntry.R | 83 --- avocado-0.2.0/avocado/inst/doc/b_analyze-hass-cntry.Rmd | 93 --- avocado-0.2.0/avocado/inst/doc/b_analyze-hass-cntry.html | 365 +++++--------- avocado-0.2.0/avocado/man/figures |only avocado-0.2.0/avocado/man/hass_market.Rd |only avocado-0.2.0/avocado/man/hass_region.Rd | 28 - avocado-0.2.0/avocado/man/hass_usa.Rd | 28 - avocado-0.2.0/avocado/vignettes/avocado.Rmd |only avocado-0.2.0/avocado/vignettes/b_analyze-hass-cntry.Rmd | 93 --- 35 files changed, 373 insertions(+), 574 deletions(-)
Title: Markdown-Based Surveys Using 'Quarto' and 'shiny'
Description: Generate surveys using markdown and R code chunks. Surveys
are composed of two files: a survey.qmd 'Quarto' file defining the
survey content (pages, questions, etc), and an app.R file defining a
'shiny' app with global settings (libraries, database configuration,
etc.) and server configuration options (e.g., conditional skipping /
display, etc.). Survey data collected from respondents is stored in a
'PostgreSQL' database. Features include controls for conditional skip
logic (skip to a page based on an answer to a question), conditional
display logic (display a question based on an answer to a question), a
customizable progress bar, and a wide variety of question types,
including multiple choice (single choice and multiple choices),
select, text, numeric, multiple choice buttons, text area, and dates.
Because the surveys render into a 'shiny' app, designers can also
leverage the reactive capabilities of 'shiny' to create dynamic and
interactive surveys.
Author: John Paul Helveston [aut, cre, cph]
,
Pingfan Hu [aut, cph] ,
Bogdan Bunea [aut, cph] ,
Stefan Munnes [ctb]
Maintainer: John Paul Helveston <john.helveston@gmail.com>
Diff between surveydown versions 0.8.0 dated 2025-01-27 and 0.9.0 dated 2025-03-18
surveydown-0.8.0/surveydown/inst/examples/sd_skip_if.qmd |only surveydown-0.8.0/surveydown/man/figures/technologies_old.png |only surveydown-0.9.0/surveydown/DESCRIPTION | 6 surveydown-0.9.0/surveydown/MD5 | 41 - surveydown-0.9.0/surveydown/NAMESPACE | 2 surveydown-0.9.0/surveydown/NEWS.md | 28 surveydown-0.9.0/surveydown/R/config.R | 36 - surveydown-0.9.0/surveydown/R/dashboard.R | 11 surveydown-0.9.0/surveydown/R/db.R | 145 ++-- surveydown-0.9.0/surveydown/R/server.R | 326 ++++++++-- surveydown-0.9.0/surveydown/R/ui.R | 293 ++++++-- surveydown-0.9.0/surveydown/README.md | 11 surveydown-0.9.0/surveydown/inst/examples/sd_skip_forward.qmd |only surveydown-0.9.0/surveydown/inst/template/app.R | 40 - surveydown-0.9.0/surveydown/inst/template/survey.qmd | 6 surveydown-0.9.0/surveydown/man/figures/technologies.svg | 2 surveydown-0.9.0/surveydown/man/sd_db_config.Rd | 3 surveydown-0.9.0/surveydown/man/sd_db_connect.Rd | 8 surveydown-0.9.0/surveydown/man/sd_question.Rd | 95 +- surveydown-0.9.0/surveydown/man/sd_reactive.Rd |only surveydown-0.9.0/surveydown/man/sd_server.Rd | 2 surveydown-0.9.0/surveydown/man/sd_show_if.Rd | 2 surveydown-0.9.0/surveydown/man/sd_skip_forward.Rd |only surveydown-0.9.0/surveydown/man/sd_skip_if.Rd | 45 - 24 files changed, 753 insertions(+), 349 deletions(-)
Title: Simulation and Prediction with Seasonal ARIMA Models
Description: Functions, classes and methods for time series modelling with ARIMA
and related models. The aim of the package is to provide consistent
interface for the user. For example, a single function autocorrelations()
computes various kinds of theoretical and sample autocorrelations. This is
work in progress, see the documentation and vignettes for the current
functionality. Function sarima() fits extended multiplicative seasonal
ARIMA models with trends, exogenous variables and arbitrary roots on the
unit circle, which can be fixed or estimated (for the algebraic basis for
this see <doi:10.48550/arXiv.2208.05055>, a paper on the methodology is being prepared).
Author: Georgi N. Boshnakov [aut, cre],
Jamie Halliday [aut]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between sarima versions 0.9.3 dated 2024-03-26 and 0.9.4 dated 2025-03-18
DESCRIPTION | 13 MD5 | 43 NEWS.md | 962 ++++++------- R/RcppExports.R | 62 R/fitTools.R | 1870 +++++++++++++------------- R/zzz.R | 32 build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 236 +-- inst/auto/REFERENCES.el | 2 inst/doc/garch_tests_example.R | 196 +- inst/doc/garch_tests_example.pdf |binary inst/doc/white_noise_tests.R | 218 +-- inst/doc/white_noise_tests.pdf |binary man/FisherInformation-methods.Rd | 200 +- man/tsdiag.Sarima.Rd | 298 ++-- tests/testthat/d_ex_InformationMatrixARMA.rds |only tests/testthat/im_ar1.rds |only tests/testthat/im_ar2.rds |only tests/testthat/im_arma1p1.rds |only tests/testthat/im_arma1p2.rds |only tests/testthat/im_arma2p1.rds |only tests/testthat/im_arma2p2.rds |only tests/testthat/im_ma1.rds |only tests/testthat/im_ma2.rds |only tests/testthat/test-armacalc.R | 428 +++-- tests/testthat/test-sarima-uar.R | 68 27 files changed, 2350 insertions(+), 2278 deletions(-)
More information about minimalistGODB at CRAN
Permanent link
Title: Interactive Maps with 'Mapbox GL JS' and 'MapLibre GL JS'
Description: Provides an interface to the 'Mapbox GL JS' (<https://docs.mapbox.com/mapbox-gl-js/guides>)
and the 'MapLibre GL JS' (<https://maplibre.org/maplibre-gl-js/docs/>) interactive mapping libraries to help users
create custom interactive maps in R. Users can create interactive globe visualizations; layer 'sf' objects to create
filled maps, circle maps, 'heatmaps', and three-dimensional graphics; and customize map styles and views. The package
also includes utilities to use 'Mapbox' and 'MapLibre' maps in 'Shiny' web applications.
Author: Kyle Walker [aut, cre]
Maintainer: Kyle Walker <kyle@walker-data.com>
Diff between mapgl versions 0.2.0 dated 2025-01-13 and 0.2.1 dated 2025-03-18
DESCRIPTION | 8 MD5 | 61 NAMESPACE | 7 NEWS.md | 10 R/controls.R | 383 ++++-- R/h3j-h3t.R |only R/layers.R | 26 R/legends.R | 88 + R/plugins.R | 435 +++++- R/shiny.R | 232 ++- R/sources.R | 496 +++++-- R/storymaps.R | 40 R/views.R | 137 +- inst/htmlwidgets/lib/h3j-h3t |only inst/htmlwidgets/mapboxgl.js | 221 +++ inst/htmlwidgets/mapboxgl.yaml | 2 inst/htmlwidgets/mapboxgl_compare.js | 1644 +++++++++++++++++++++++++ inst/htmlwidgets/mapboxgl_compare.yaml | 46 inst/htmlwidgets/maplibregl.js | 575 ++++++--- inst/htmlwidgets/maplibregl.yaml | 5 inst/htmlwidgets/maplibregl_compare.js | 1834 ++++++++++++++++++++++++++++- inst/htmlwidgets/maplibregl_compare.yaml | 58 inst/htmlwidgets/styles/layers-control.css | 80 + man/add_categorical_legend.Rd | 17 man/add_continuous_legend.Rd | 17 man/add_h3j_source.Rd |only man/add_layers_control.Rd | 27 man/add_legend.Rd | 17 man/compare.Rd | 86 + man/mapboxglCompareOutput.Rd |only man/mapboxgl_compare_proxy.Rd |only man/maplibreCompareOutput.Rd |only man/maplibre_compare_proxy.Rd |only man/renderMapboxglCompare.Rd |only man/renderMaplibreCompare.Rd |only man/story_section.Rd | 4 36 files changed, 5713 insertions(+), 843 deletions(-)
Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general
engine for big data processing, see <https://spark.apache.org/>. This
package supports connecting to local and remote Apache Spark clusters,
provides a 'dplyr' compatible back-end, and provides an interface to
Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut],
Kevin Kuo [aut] ,
Kevin Ushey [aut],
JJ Allaire [aut],
Samuel Macedo [ctb],
Hossein Falaki [aut],
Lu Wang [aut],
Andy Zhang [aut],
Yitao Li [aut] ,
Jozef Hajnala [ctb],
Maciej Szymkiewicz [ctb] ,
Wil Davis [ctb],
Edgar Ruiz [au [...truncated...]
Maintainer: Edgar Ruiz <edgar@rstudio.com>
Diff between sparklyr versions 1.8.6 dated 2024-04-29 and 1.9.0 dated 2025-03-18
sparklyr-1.8.6/sparklyr/inst/java/sparklyr-2.4-2.11.jar |only sparklyr-1.8.6/sparklyr/inst/java/sparklyr-master-2.12.jar |only sparklyr-1.9.0/sparklyr/DESCRIPTION | 10 sparklyr-1.9.0/sparklyr/MD5 | 96 +- sparklyr-1.9.0/sparklyr/NAMESPACE | 2 sparklyr-1.9.0/sparklyr/NEWS.md | 22 sparklyr-1.9.0/sparklyr/R/avro_utils.R | 15 sparklyr-1.9.0/sparklyr/R/config_spark.R | 10 sparklyr-1.9.0/sparklyr/R/core_invoke.R | 6 sparklyr-1.9.0/sparklyr/R/core_worker_config.R | 5 sparklyr-1.9.0/sparklyr/R/data_interface.R | 9 sparklyr-1.9.0/sparklyr/R/dplyr_spark.R | 1 sparklyr-1.9.0/sparklyr/R/dplyr_sql.R | 8 sparklyr-1.9.0/sparklyr/R/install_spark.R | 72 - sparklyr-1.9.0/sparklyr/R/install_spark_versions.R | 155 +-- sparklyr-1.9.0/sparklyr/R/install_spark_windows.R | 6 sparklyr-1.9.0/sparklyr/R/livy_connection.R | 2 sparklyr-1.9.0/sparklyr/R/ml_persistence.R | 15 sparklyr-1.9.0/sparklyr/R/shell_connection.R | 13 sparklyr-1.9.0/sparklyr/R/spark_apply.R | 102 +- sparklyr-1.9.0/sparklyr/R/spark_compile.R | 34 sparklyr-1.9.0/sparklyr/R/spark_extensions.R | 17 sparklyr-1.9.0/sparklyr/R/spark_gen_embedded_sources.R | 9 sparklyr-1.9.0/sparklyr/R/spark_invoke.R | 6 sparklyr-1.9.0/sparklyr/R/tables_spark.R | 6 sparklyr-1.9.0/sparklyr/R/utils.R | 29 sparklyr-1.9.0/sparklyr/R/worker_apply.R | 19 sparklyr-1.9.0/sparklyr/R/worker_main.R | 1 sparklyr-1.9.0/sparklyr/README.md | 69 - sparklyr-1.9.0/sparklyr/build/partial.rdb |binary sparklyr-1.9.0/sparklyr/inst/extdata/versions-next.json | 6 sparklyr-1.9.0/sparklyr/inst/extdata/versions.json | 442 ----------- sparklyr-1.9.0/sparklyr/inst/java/sparklyr-2.4-2.12.jar |binary sparklyr-1.9.0/sparklyr/inst/java/sparklyr-3.0-2.12.jar |binary sparklyr-1.9.0/sparklyr/inst/java/sparklyr-3.5-2.12.jar |only sparklyr-1.9.0/sparklyr/inst/java/sparklyr-master-2.13.jar |only sparklyr-1.9.0/sparklyr/java/embedded_sources.R | 37 sparklyr-1.9.0/sparklyr/java/spark-3.0.0/utils.scala |only sparklyr-1.9.0/sparklyr/java/spark-3.5.0/sparksqlutils.scala | 100 ++ sparklyr-1.9.0/sparklyr/java/spark-3.5.0/utils.scala |only sparklyr-1.9.0/sparklyr/java/spark-4.0.0 |only sparklyr-1.9.0/sparklyr/man/invoke.Rd | 7 sparklyr-1.9.0/sparklyr/man/jarray.Rd | 2 sparklyr-1.9.0/sparklyr/man/jfloat.Rd | 2 sparklyr-1.9.0/sparklyr/man/jfloat_array.Rd | 2 sparklyr-1.9.0/sparklyr/man/spark_versions.Rd | 4 sparklyr-1.9.0/sparklyr/man/src_databases.Rd | 5 sparklyr-1.9.0/sparklyr/tools/readme/dplyr-ggplot2-1.png |binary 48 files changed, 624 insertions(+), 722 deletions(-)
Title: Univariate GARCH-MIDAS, Double-Asymmetric GARCH-MIDAS and
MEM-MIDAS
Description: Adds the MIxing-Data Sampling (MIDAS, Ghysels et al. (2007) <doi:10.1080/07474930600972467>) components to a variety of GARCH and MEM (Engle (2002) <doi:10.1002/jae.683>, Engle and Gallo (2006) <doi:10.1016/j.jeconom.2005.01.018>, and Amendola et al. (2024) <doi:10.1016/j.seps.2023.101764>) models, with the aim of predicting the volatility with additional low-frequency (that is, MIDAS) terms. The estimation takes place through simple functions, which provide in-sample and (if present) and out-of-sample evaluations. 'rumidas' also offers a summary tool, which synthesizes the main information of the estimated model. There is also the possibility of generating one-step-ahead and multi-step-ahead forecasts.
Author: Vincenzo Candila [aut, cre]
Maintainer: Vincenzo Candila <vcandila@unisa.it>
Diff between rumidas versions 0.1.2 dated 2024-02-17 and 0.1.3 dated 2025-03-18
DESCRIPTION | 6 MD5 | 28 - NAMESPACE | 6 NEWS.md | 5 R/functions.R | 1 R/midas_functions.R | 1007 +++++++++++++++++++++++++++++++++++++- build/partial.rdb |binary inst/CITATION | 2 man/GM_2M_cond_vol.Rd |only man/GM_2M_cond_vol_no_skew.Rd |only man/GM_2M_loglik.Rd |only man/GM_2M_loglik_no_skew.Rd |only man/GM_2M_long_run_vol.Rd |only man/GM_2M_long_run_vol_no_skew.Rd |only man/MEM_X_loglik.Rd | 6 man/MEM_X_loglik_no_skew.Rd | 4 man/mv_into_mat.Rd | 1 man/ugmfit.Rd | 2 18 files changed, 1034 insertions(+), 34 deletions(-)
Title: Enhanced 'R Markdown' Format for 'Word' and 'PowerPoint'
Description: Allows production of 'Microsoft' corporate documents from 'R Markdown' by
reusing formatting defined in 'Microsoft Word' documents. You can reuse table styles,
list styles but also add column sections, landscape oriented pages. Table and image
captions as well as cross-references are transformed into 'Microsoft Word' fields,
allowing documents edition and merging without issue with references; the syntax
conforms to the 'bookdown' cross-reference definition. Objects generated by
the 'officer' package are also supported in the 'knitr' chunks.
'Microsoft PowerPoint' presentations also benefit from this as well as the
ability to produce editable vector graphics in 'PowerPoint' and also to
define placeholder where content is to be added.
Author: David Gohel [aut, cre, cph],
ArData [cph],
Institut fuer Qualitaetssicherung und Transparenz im Gesundheitswesen
[fnd],
Noam Ross [aut] ,
ArData [cph],
Martin Camitz [ctb]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between officedown versions 0.3.3 dated 2024-07-16 and 0.4.0 dated 2025-03-18
officedown-0.3.3/officedown/tests/testthat/utils.R |only officedown-0.4.0/officedown/DESCRIPTION | 14 ++-- officedown-0.4.0/officedown/MD5 | 28 ++++---- officedown-0.4.0/officedown/NEWS.md | 20 +++++- officedown-0.4.0/officedown/R/hooks.R | 33 ++++++++++ officedown-0.4.0/officedown/R/rdocx_document.R | 7 +- officedown-0.4.0/officedown/build/vignette.rds |binary officedown-0.4.0/officedown/man/rdocx_document.Rd | 7 ++ officedown-0.4.0/officedown/tests/testthat/helper-utils.R |only officedown-0.4.0/officedown/tests/testthat/test-rdocx-lists.R | 2 officedown-0.4.0/officedown/tests/testthat/test-rdocx-par-settings.R | 2 officedown-0.4.0/officedown/tests/testthat/test-rdocx-plots.R | 17 ----- officedown-0.4.0/officedown/tests/testthat/test-rdocx-sections.R | 2 officedown-0.4.0/officedown/tests/testthat/test-rdocx-tables.R | 2 officedown-0.4.0/officedown/tests/testthat/test-render-r.R | 2 officedown-0.4.0/officedown/tests/testthat/test-rpptx.R | 22 +++--- 16 files changed, 100 insertions(+), 58 deletions(-)
Title: Local Projections Impulse Response Functions
Description: Provides functions to estimate and visualize linear as well as nonlinear impulse
responses based on local projections by Jordà (2005) <doi:10.1257/0002828053828518>.
The methods and the package are explained in detail in Adämmer (2019) <doi:10.32614/RJ-2019-052>.
Author: Philipp Adaemmer [aut, cre] ,
James P. LeSage [ctb],
Mehmet Balcilar [ctb],
Jon Danielsson [ctb]
Maintainer: Philipp Adaemmer <philipp.adaemmer@uni-greifswald.de>
Diff between lpirfs versions 0.2.3 dated 2023-07-06 and 0.2.4 dated 2025-03-18
DESCRIPTION | 12 ++++----- MD5 | 48 +++++++++++++++++++-------------------- NEWS.md | 6 ++++ R/data-documentation.R | 8 +++--- R/lp_lin_panel.R | 6 +++- R/lp_nl.R | 34 +++++++++++++-------------- R/lp_nl_iv.R | 8 +++--- R/lp_nl_panel.R | 4 +-- R/package.R | 3 -- README.md | 4 +-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/lpirfs_vignette.R | 22 ++++++++--------- inst/doc/lpirfs_vignette.html | 22 ++++++++--------- man/ag_data.Rd | 4 +-- man/interest_rules_var_data.Rd | 2 - man/lp_lin_panel.Rd | 6 +++- man/lp_nl.Rd | 32 +++++++++++++------------- man/lp_nl_iv.Rd | 8 +++--- man/lp_nl_panel.Rd | 7 +++-- man/lpirfs-package.Rd | 8 ++++++ man/monetary_var_data.Rd | 2 - src/newey_west.cpp | 4 --- src/newey_west_tsls.cpp | 13 ++++------ tests/testthat/test-newey_west.R | 29 +++++++++++++++++++++-- 25 files changed, 164 insertions(+), 128 deletions(-)
Title: Interface for Large Language Model APIs in R
Description: A unified interface to interact with various Large Language Model (LLM) APIs such as 'OpenAI' (see <https://platform.openai.com/docs/overview> for details), 'Anthropic' (see <https://docs.anthropic.com/en/api/getting-started> for details), 'Groq' (see <https://console.groq.com/docs/api-reference> for details), 'Together AI' (see <https://docs.together.ai/docs/quickstart> for details), 'DeepSeek' (see <https://api-docs.deepseek.com> for details), 'Gemini' (see <https://aistudio.google.com> for details), and 'Voyage AI' (see <https://docs.voyageai.com/docs/introduction> for details). Allows users to use and switch between various APIs seamlessly within R, and define LLM agents.
Author: Ali Sanaei [aut, cre]
Maintainer: Ali Sanaei <sanaei@uchicago.edu>
Diff between LLMR versions 0.2.3 dated 2025-03-13 and 0.2.5 dated 2025-03-18
DESCRIPTION | 10 MD5 | 20 + NAMESPACE | 4 R/LLMR.R | 7 R/LLM_robust_utils.R |only R/Zagent.R | 573 +----------------------------------------------- man/Agent.Rd | 2 man/cache_llm_call.Rd |only man/call_llm.Rd | 65 ----- man/call_llm_robust.Rd |only man/llm_config.Rd | 52 ---- man/log_llm_error.Rd |only man/parse_embeddings.Rd | 25 -- 13 files changed, 46 insertions(+), 712 deletions(-)
Title: Multivariate Dependence with Copulas
Description: Classes (S4) of commonly used elliptical, Archimedean,
extreme-value and other copula families, as well as their rotations,
mixtures and asymmetrizations. Nested Archimedean copulas, related
tools and special functions. Methods for density, distribution, random
number generation, bivariate dependence measures, Rosenblatt transform,
Kendall distribution function, perspective and contour plots. Fitting of
copula models with potentially partly fixed parameters, including
standard errors. Serial independence tests, copula specification tests
(independence, exchangeability, radial symmetry, extreme-value
dependence, goodness-of-fit) and model selection based on
cross-validation. Empirical copula, smoothed versions, and
non-parametric estimators of the Pickands dependence function.
Author: Marius Hofert [aut] ,
Ivan Kojadinovic [aut] ,
Martin Maechler [aut, cre] ,
Jun Yan [aut] ,
Johanna G. Neslehova [ctb] ,
<https://orcid.org/0000-0001-9634-4796>),
Rebecca Morger [ctb] : code for free mixCopula weight
parameters)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between copula versions 1.1-5 dated 2025-02-09 and 1.1-6 dated 2025-03-18
DESCRIPTION | 11 +++++---- MD5 | 38 ++++++++++++++++---------------- R/AllClass.R | 6 ++--- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 9 +++++++ inst/doc/AC_Liouville.html | 4 +-- inst/doc/AR_Clayton.html | 4 +-- inst/doc/Frank-Rmpfr.pdf |binary inst/doc/GIG.html | 14 +++++------ inst/doc/HAXC.html | 4 +-- inst/doc/NALC.html | 8 +++--- inst/doc/copula_GARCH.html | 4 +-- inst/doc/dNAC.html | 4 +-- inst/doc/empiricial_copulas.html | 4 +-- inst/doc/logL_visualization.html | 46 +++++++++++++++++++-------------------- inst/doc/nacopula-pkg.pdf |binary inst/doc/qrng.html | 4 +-- inst/doc/rhoAMH-dilog.pdf |binary inst/doc/wild_animals.html | 32 +++++++++++++-------------- 20 files changed, 101 insertions(+), 91 deletions(-)
Title: Comprehensive Science Mapping Analysis
Description: Tool for quantitative research in scientometrics and bibliometrics.
It implements the comprehensive workflow for science mapping analysis proposed in Aria M. and
Cuccurullo C. (2017) <doi:10.1016/j.joi.2017.08.007>.
'bibliometrix' provides various routines for importing bibliographic data from 'SCOPUS',
'Clarivate Analytics Web of Science' (<https://www.webofknowledge.com/>), 'Digital Science Dimensions'
(<https://www.dimensions.ai/>), 'OpenAlex' (<https://openalex.org/>), 'Cochrane Library' (<https://www.cochranelibrary.com/>), 'Lens' (<https://lens.org>),
and 'PubMed' (<https://pubmed.ncbi.nlm.nih.gov/>) databases, performing bibliometric analysis
and building networks for co-citation, coupling, scientific collaboration and co-word analysis.
Author: Massimo Aria [cre, aut, cph] ,
Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between bibliometrix versions 4.3.2 dated 2025-01-27 and 4.3.3 dated 2025-03-18
DESCRIPTION | 11 +- MD5 | 31 +++--- NAMESPACE | 2 NEWS | 6 + R/conceptualStructure.R | 30 +----- R/plotThematicEvolution.R | 190 ++++++++++++++++++++++-------------------- R/tableTag.R | 12 +- R/thematicEvolution.R | 18 +++ R/thematicMap.R | 6 - R/zzz.R | 3 build/partial.rdb |binary inst/biblioshiny/biblioShot.R |only inst/biblioshiny/libraries.R | 19 ---- inst/biblioshiny/server.R | 65 ++++++++------ inst/biblioshiny/ui.R | 23 ++++- inst/biblioshiny/utils.R | 31 ++++-- man/plotThematicEvolution.Rd | 32 +++++-- 17 files changed, 270 insertions(+), 209 deletions(-)
Title: Simplified Vertex-Wise Analyses of Whole-Brain and Hippocampal
Surface
Description: Provides functions to run statistical analyses on
surface-based neuroimaging data, computing measures including cortical
thickness and surface area of the whole-brain and of the hippocampi.
It can make use of 'FreeSurfer', 'fMRIprep' and 'HCP' preprocessed
datasets and 'HippUnfold' hippocampal segmentation outputs for a given
sample by restructuring the data values into a single file. The single
file can then be used by the package for analyses independently from
its base dataset and without need for its access.
Author: Junhong Yu [aut] ,
Charly Billaud [aut, cre]
Maintainer: Charly Billaud <charly.billaud@ntu.edu.sg>
Diff between VertexWiseR versions 1.2.1 dated 2025-03-09 and 1.3.0 dated 2025-03-18
DESCRIPTION | 8 - MD5 | 22 +-- NAMESPACE | 2 NEWS.md | 10 + R/otherfunc.R | 11 - R/vertmixedTFCE.R | 52 +++----- inst/doc/VertexWiseR_Example_2.html | 207 +++++++++++------------------------ vignettes/FINK_tstatmaps.png |binary vignettes/Python_troubleshooting.Rmd | 2 vignettes/SPRENG_tstatmaps.png |binary vignettes/VertexWiseR_Example_2.Rmd | 27 ---- vignettes/traj.png |binary 12 files changed, 121 insertions(+), 220 deletions(-)
Title: Analyses of Text using Transformers Models from HuggingFace,
Natural Language Processing and Machine Learning
Description: Link R with Transformers from Hugging Face to transform text variables to word embeddings; where the word embeddings are used to statistically test the mean difference between set of texts, compute semantic similarity scores between texts, predict numerical variables, and visual statistically significant words according to various dimensions etc. For more information see <https://www.r-text.org>.
Author: Oscar Kjell [aut, cre] ,
Salvatore Giorgi [aut] ,
Andrew Schwartz [aut]
Maintainer: Oscar Kjell <oscar.kjell@psy.lu.se>
Diff between text versions 1.3.0 dated 2024-12-05 and 1.4 dated 2025-03-18
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Title: Geometrical Functionality of the 'spatstat' Family
Description: Defines spatial data types and supports geometrical operations
on them. Data types include point patterns, windows (domains),
pixel images, line segment patterns, tessellations and hyperframes.
Capabilities include creation and manipulation of data
(using command line or graphical interaction),
plotting, geometrical operations (rotation, shift, rescale,
affine transformation), convex hull, discretisation and
pixellation, Dirichlet tessellation, Delaunay triangulation,
pairwise distances, nearest-neighbour distances,
distance transform, morphological operations
(erosion, dilation, closing, opening), quadrat counting,
geometrical measurement, geometrical covariance,
colour maps, calculus on spatial domains,
Gaussian blur, level sets of images, transects of images,
intersections between objects, minimum distance matching.
(Excludes spatial data on a network, which are supported by
the package 'spatstat.linnet'.)
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Warick Brown [ctb],
Tilman Davies [ctb],
Ute Hahn [ctb],
Martin Hazelton [ctb],
Abdollah Jalilian [ctb],
Greg McSwiggan [ctb, cph],
Sebastian Meyer [ctb, cph],
Jens Oeh [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.geom versions 3.3-5 dated 2025-01-18 and 3.3-6 dated 2025-03-18
DESCRIPTION | 18 ++++--- MD5 | 32 ++++++------ NAMESPACE | 11 ++++ NEWS | 32 ++++++++++++ R/diagram.R | 105 +++++++++++++++++++++++++++++++----------- R/tess.R | 18 ------- R/tessfun.R |only R/window.R | 5 +- inst/doc/packagesizes.txt | 2 inst/info/packagesizes.txt | 2 man/as.function.tess.Rd | 8 ++- man/distfun.Rd | 11 ++++ man/integral.tessfun.Rd |only man/macros/defns.Rd | 4 + man/methods.funxy.Rd | 6 ++ man/plot.yardstick.Rd | 55 +++++++++++++++++----- man/spatstat.geom-internal.Rd | 10 +++- man/spatstat.geom-package.Rd | 8 +++ 18 files changed, 242 insertions(+), 85 deletions(-)
Title: Precision-Recall and ROC Curves for Weighted and Unweighted Data
Description: Computes the areas under the precision-recall (PR) and ROC curve for weighted (e.g., soft-labeled) and unweighted data. In contrast to other implementations, the interpolation between points of the PR curve is done by a non-linear piecewise function. In addition to the areas under the curves, the curves themselves can also be computed and plotted by a specific S3-method. References: Davis and Goadrich (2006) <doi:10.1145/1143844.1143874>; Keilwagen et al. (2014) <doi:10.1371/journal.pone.0092209>; Grau et al. (2015) <doi:10.1093/bioinformatics/btv153>.
Author: Jan Grau [aut, cre],
Jens Keilwagen [aut]
Maintainer: Jan Grau <grau@informatik.uni-halle.de>
Diff between PRROC versions 1.3.1 dated 2018-06-19 and 1.4 dated 2025-03-18
DESCRIPTION | 21 +++++++-- MD5 | 25 ++++++----- NAMESPACE | 5 +- R/PRROC.R | 97 +++++++++++++++++++++++++++++++++++++++++++++- build/vignette.rds |binary inst/CITATION | 8 +-- inst/doc/PRROC.R | 54 ++++++++++++++++++++++--- inst/doc/PRROC.Rnw | 36 +++++++++++++++++ inst/doc/PRROC.pdf |binary man/PRROC-package.Rd | 4 - man/ggprroc.Rd |only tests/testthat/test-PR.R | 20 ++++++--- tests/testthat/test-ROC.R | 20 ++++++--- vignettes/PRROC.Rnw | 36 +++++++++++++++++ 14 files changed, 280 insertions(+), 46 deletions(-)
Title: Soil Iron Oxides via Diffuse Reflectance
Description: Calculate the ratio of iron oxides, hematite and goethite, in
soil using the diffuse reflectance technique. The Kubelka-Munk theory,
second derivative analysis, and spectral region amplitudes related to
hematite and goethite content are used for quantification (Torrent,
J., & Barron, V. (2008) <doi:10.2136/sssabookser5.5.c13>).
Additionally, the package calculates soil color in the visible
spectrum using Munsell and RGB color spaces, based on color theory
(Viscarra et al. (2006) <doi:10.1016/j.geoderma.2005.07.017>).
Author: Gustavo Frosi [aut, cre] ,
Vidal Barron [aut] ,
Alberto Inda [aut] ,
Kayn Bastiani [aut]
Maintainer: Gustavo Frosi <gustavofrosi@hotmail.com>
Diff between OxSR versions 1.0.0 dated 2025-03-11 and 1.0.1 dated 2025-03-18
DESCRIPTION | 36 ++++++++++++++++---------- MD5 | 17 +++++++----- NEWS.md | 2 + R/relacion_hm_gt.R | 16 ++++++----- README.md | 47 ++++++++++------------------------- inst/WORDLIST | 10 ++----- man/figures |only man/relation_hm_gt.Rd | 4 +- tests/testthat/test-relacion_hm_gt.R | 5 --- 9 files changed, 63 insertions(+), 74 deletions(-)
Title: "Eating the Liver of Data Science"
Description: Provides a suite of helper functions and a collection of datasets used in the book <https://uncovering-data-science.netlify.app>. It is designed to make data science techniques accessible to individuals with minimal coding experience. Inspired by an ancient Persian idiom, the package likens this learning process to "eating the liver of data science," symbolizing deep and immersive engagement with the field.
Author: Reza Mohammadi [aut, cre] ,
Kevin Burke [aut]
Maintainer: Reza Mohammadi <a.mohammadi@uva.nl>
Diff between liver versions 1.18 dated 2024-11-22 and 1.19 dated 2025-03-18
DESCRIPTION | 12 +-- MD5 | 50 ++++++++------- NAMESPACE | 7 +- NEWS.md | 16 ++++ R/accuracy.R | 1 R/conf.mat.R | 79 ++++++++++++++++-------- R/conf.mat.plot.R | 3 R/kNN.R | 142 ++++++++++++++++++++++++-------------------- R/kNN.plot.R | 95 +++++++++++++++++++++++------ R/minmax.R | 129 +++++++++++++++++++++------------------ R/one.hot.R |only R/scaler.R | 19 +++-- R/zscore.R | 120 +++++++++++++++++++++---------------- README.md | 9 +- inst/doc/liver-example.Rmd | 4 - inst/doc/liver-example.html | 43 +++++++------ man/conf.mat.Rd | 2 man/conf.mat.plot.Rd | 2 man/figures/logo.png |binary man/kNN.Rd | 7 -- man/kNN.plot.Rd | 14 ++-- man/liver-package.Rd | 3 man/minmax.Rd | 8 +- man/one.hot.Rd |only man/scaler.Rd | 14 ++-- man/zscore.Rd | 7 +- vignettes/liver-example.Rmd | 4 - 27 files changed, 474 insertions(+), 316 deletions(-)
Title: Crunch.io Data Tools
Description: The Crunch.io service <https://crunch.io/> provides a cloud-based
data store and analytic engine, as well as an intuitive web interface.
Using this package, analysts can interact with and manipulate Crunch
datasets from within R. Importantly, this allows technical researchers to
collaborate naturally with team members, managers, and clients who prefer a
point-and-click interface.
Author: Greg Freedman Ellis [aut, cre],
Jonathan Keane [aut],
Mike Malecki [aut],
Neal Richardson [aut],
Gordon Shotwell [aut],
Aljaz Sluga [aut]
Maintainer: Greg Freedman Ellis <greg@crunch.io>
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crunch-1.31.0/crunch/tests/testthat/test-derive-array.R | 20 crunch-1.31.0/crunch/tests/testthat/test-derive-debug.R | 444 +++--- crunch-1.31.0/crunch/tests/testthat/test-derive.R | 183 +- crunch-1.31.0/crunch/tests/testthat/test-export-dataset.R | 6 crunch-1.31.0/crunch/tests/testthat/test-expressions.R | 8 crunch-1.31.0/crunch/tests/testthat/test-filters.R | 14 crunch-1.31.0/crunch/tests/testthat/test-folders.R | 4 crunch-1.31.0/crunch/tests/testthat/test-fork.R | 23 crunch-1.31.0/crunch/tests/testthat/test-get-datasets.R | 59 crunch-1.31.0/crunch/tests/testthat/test-make-array.R | 8 crunch-1.31.0/crunch/tests/testthat/test-multitables.R | 17 crunch-1.31.0/crunch/tests/testthat/test-new-dataset.R | 112 + crunch-1.31.0/crunch/tests/testthat/test-palettes.R | 5 crunch-1.31.0/crunch/tests/testthat/test-private-variables.R | 2 crunch-1.31.0/crunch/tests/testthat/test-progress.R | 155 +- crunch-1.31.0/crunch/tests/testthat/test-project-folder.R | 8 crunch-1.31.0/crunch/tests/testthat/test-projects.R | 7 crunch-1.31.0/crunch/tests/testthat/test-share.R | 4 crunch-1.31.0/crunch/tests/testthat/test-slides.R | 6 crunch-1.31.0/crunch/tests/testthat/test-update-with-missing.R | 2 crunch-1.31.0/crunch/tests/testthat/test-variable-as-methods.R | 13 crunch-1.31.0/crunch/tests/testthat/test-variable-folders.R | 4 crunch-1.31.0/crunch/tests/testthat/test-variable-order.R | 336 ----- crunch-1.31.0/crunch/tests/testthat/test-variables.R | 2 crunch-1.31.0/crunch/tests/testthat/test-versioning.R | 21 crunch-1.31.0/crunch/tests/testthat/test-weighting.R | 2 crunch-1.31.0/crunch/vignettes/crunch.Rmd | 31 crunch-1.31.0/crunch/vignettes/crunch/0/api.json | 29 crunch-1.31.0/crunch/vignettes/crunch/0/api/datasets-68f2e9-POST.R |only crunch-1.31.0/crunch/vignettes/crunch/0/api/datasets/0e7d58 |only crunch-1.31.0/crunch/vignettes/crunch/0/api/datasets/0e7d58.json |only crunch-1.31.0/crunch/vignettes/crunch/0/api/progress.json | 17 crunch-1.31.0/crunch/vignettes/crunch/0/api/projects |only crunch-1.31.0/crunch/vignettes/crunch/0/api/projects.json |only crunch-1.31.0/crunch/vignettes/crunch/0/api/sources-POST.R | 41 crunch-1.31.0/crunch/vignettes/crunch/1/api/datasets/0e7d58 |only crunch-1.31.0/crunch/vignettes/crunch/1/api/datasets/0e7d58-7931d8-PATCH.204 |only crunch-1.31.0/crunch/vignettes/crunch/2/api/datasets/0e7d58 |only crunch-1.31.0/crunch/vignettes/crunch/3/api/datasets/0e7d58 |only crunch-1.31.0/crunch/vignettes/crunch/3/api/datasets/0e7d58.json |only crunch-1.31.0/crunch/vignettes/crunch/4/api/datasets/0e7d58 |only crunch-1.31.0/crunch/vignettes/crunch/5/api/datasets/0e7d58 |only crunch-1.31.0/crunch/vignettes/crunch/5/api/datasets/0e7d58.json |only crunch-1.31.0/crunch/vignettes/derive.Rmd | 19 crunch-1.31.0/crunch/vignettes/fork-and-merge.Rmd | 62 crunch-1.31.0/crunch/vignettes/fork-and-merge/0/api.json | 31 crunch-1.31.0/crunch/vignettes/fork-and-merge/0/api/datasets-33ab07-POST.R |only crunch-1.31.0/crunch/vignettes/fork-and-merge/0/api/datasets/44c194 |only crunch-1.31.0/crunch/vignettes/fork-and-merge/0/api/datasets/44c194.json |only crunch-1.31.0/crunch/vignettes/fork-and-merge/0/api/datasets/5af735 |only crunch-1.31.0/crunch/vignettes/fork-and-merge/0/api/datasets/5af735.json |only crunch-1.31.0/crunch/vignettes/fork-and-merge/0/api/projects |only crunch-1.31.0/crunch/vignettes/fork-and-merge/0/api/projects.json |only crunch-1.31.0/crunch/vignettes/fork-and-merge/0/api/sources-POST.R | 35 crunch-1.31.0/crunch/vignettes/fork-and-merge/1/api/datasets/44c194 |only crunch-1.31.0/crunch/vignettes/fork-and-merge/1/api/datasets/44c194.json |only crunch-1.31.0/crunch/vignettes/fork-and-merge/2/api/datasets/5af735 |only crunch-1.31.0/crunch/vignettes/fork-and-merge/2/api/datasets/5af735.json |only crunch-1.31.0/crunch/vignettes/fork-and-merge/3/api/datasets-797056-POST.R |only crunch-1.31.0/crunch/vignettes/fork-and-merge/3/api/datasets/093bf8 |only crunch-1.31.0/crunch/vignettes/fork-and-merge/3/api/datasets/093bf8.json |only crunch-1.31.0/crunch/vignettes/fork-and-merge/3/api/progress.json | 17 crunch-1.31.0/crunch/vignettes/fork-and-merge/3/api/sources-POST.R | 35 crunch-1.31.0/crunch/vignettes/fork-and-merge/4/api/datasets/093bf8 |only crunch-1.31.0/crunch/vignettes/fork-and-merge/4/api/datasets/3e463e |only crunch-1.31.0/crunch/vignettes/fork-and-merge/4/api/datasets/3e463e.json |only crunch-1.31.0/crunch/vignettes/fork-and-merge/4/api/datasets/5af735 |only crunch-1.31.0/crunch/vignettes/fork-and-merge/4/api/progress.json | 17 crunch-1.31.0/crunch/vignettes/fork-and-merge/4/api/projects |only crunch-1.31.0/crunch/vignettes/fork-and-merge/4/api/projects.json |only crunch-1.31.0/crunch/vignettes/fork-and-merge/5/api/datasets/5af735 |only crunch-1.31.0/crunch/vignettes/fork-and-merge/5/api/datasets/5af735.json |only crunch-1.31.0/crunch/vignettes/fork-and-merge/6/api/datasets-923fde-POST.R |only crunch-1.31.0/crunch/vignettes/fork-and-merge/6/api/datasets/37cc49 |only crunch-1.31.0/crunch/vignettes/fork-and-merge/6/api/datasets/37cc49.json |only crunch-1.31.0/crunch/vignettes/fork-and-merge/6/api/datasets/55d13a |only crunch-1.31.0/crunch/vignettes/fork-and-merge/6/api/datasets/55d13a.json |only crunch-1.31.0/crunch/vignettes/fork-and-merge/6/api/datasets/5af735 |only crunch-1.31.0/crunch/vignettes/fork-and-merge/6/api/projects |only crunch-1.31.0/crunch/vignettes/fork-and-merge/6/api/projects.json |only crunch-1.31.0/crunch/vignettes/fork-and-merge/6/api/sources-POST.R | 35 crunch-1.31.0/crunch/vignettes/fork-and-merge/7/api/datasets/37cc49 |only crunch-1.31.0/crunch/vignettes/fork-and-merge/8/api/datasets/5af735 |only crunch-1.31.0/crunch/vignettes/fork-and-merge/8/api/datasets/5af735.json |only crunch-1.31.0/crunch/vignettes/subtotals.Rmd | 24 crunch-1.31.0/crunch/vignettes/subtotals/0/api.json | 8 crunch-1.31.0/crunch/vignettes/subtotals/0/api/datasets/ba16ac |only crunch-1.31.0/crunch/vignettes/subtotals/0/api/datasets/ba16ac.json |only crunch-1.31.0/crunch/vignettes/subtotals/0/api/projects |only crunch-1.31.0/crunch/vignettes/subtotals/0/api/projects.json |only crunch-1.31.0/crunch/vignettes/subtotals/1/api/datasets/ba16ac |only crunch-1.31.0/crunch/vignettes/subtotals/2/api/datasets/ba16ac |only crunch-1.31.0/crunch/vignettes/subtotals/3/api/datasets/ba16ac |only 272 files changed, 3177 insertions(+), 2679 deletions(-)
Title: A 'dplyr' Interface for Crunch
Description: In order to facilitate analysis of datasets hosted on the Crunch
data platform <https://crunch.io/>, the 'crplyr' package implements 'dplyr'
methods on top of the Crunch backend. The usual methods 'select', 'filter',
'group_by', 'summarize', and 'collect' are implemented in such a way as to
perform as much computation on the server and pull as little data locally
as possible.
Author: Greg Freedman Ellis [aut, cre],
Jonathan Keane [aut],
Neal Richardson [aut],
Mike Malecki [aut],
Gordon Shotwell [aut],
Aljaz Sluga [aut]
Maintainer: Greg Freedman Ellis <greg@crunch.io>
Diff between crplyr versions 0.4.0 dated 2023-03-21 and 0.4.2 dated 2025-03-18
DESCRIPTION | 8 +- MD5 | 53 ++++++++++---- NAMESPACE | 6 + NEWS.md | 2 R/as-tibble.R | 17 ++-- build/vignette.rds |binary inst/doc/plotting.R | 10 +- inst/doc/plotting.html | 120 ++++++++++++++++---------------- tests/testthat/_snaps |only tests/testthat/helper.R | 6 + tests/testthat/test-as-tibble.R | 24 +++--- tests/testthat/test-collect.R | 10 +- tests/testthat/test-filter.R | 10 +- tests/testthat/test-group-by.R | 6 - tests/testthat/test-mutate.R | 2 tests/testthat/test-select.R | 4 - tests/testthat/test-variable-autoplot.R | 2 17 files changed, 161 insertions(+), 119 deletions(-)
Title: Estimation of Censored AI/QUAI Demand System via Maximum
Likelihood Estimation (MLE)
Description: Tools for estimating censored Almost Ideal (AI) and Quadratic Almost Ideal (QUAI) demand systems using Maximum Likelihood Estimation (MLE). It includes functions for calculating demand share equations and the truncated log-likelihood function for a system of equations, incorporating demographic variables. The package is designed to handle censored data, where some observations may be zero due to non-purchase of certain goods. Package also contains a procedure to approximate demand elasticities numerically and estimate standard errors via Delta Method. It is particularly useful for applied researchers analyzing household consumption data.
Author: Noe J Nava [aut, cre]
Maintainer: Noe J Nava <noejnava2@gmail.com>
Diff between censoredAIDS versions 0.1.0 dated 2025-03-13 and 1.0.0 dated 2025-03-18
DESCRIPTION | 10 +++++----- MD5 | 18 ++++++++++++------ NAMESPACE | 1 + R/aidsCalculate.R | 11 ++++++----- R/censoredElasticity.R |only R/censoredaidsLoglike.R | 8 +++----- R/muaidsCalculate.R |only inst |only man/aidsCalculate.Rd | 3 ++- man/censoredElasticity.Rd |only man/censoredaidsLoglike.Rd | 4 ++-- man/muaidsCalculate.Rd |only tests/testthat/test-censoredElasticity.R |only 13 files changed, 31 insertions(+), 24 deletions(-)
Title: Shared Memory Atomic Operations
Description: Implements named semaphores from the 'boost' 'C++' library
<https://www.boost.org/>. A semaphore object is shared amongst several
processes. This integer value can be safely incremented or decremented by
each process. Processes can also wait (blocking) for the value to become
positive.
Author: Daniel P. Smith [aut, cre] ,
Alkek Center for Metagenomics and Microbiome Research [cph, fnd]
Maintainer: Daniel P. Smith <dansmith01@gmail.com>
Diff between semaphore versions 1.0.2 dated 2024-11-13 and 1.1.0 dated 2025-03-18
DESCRIPTION | 12 ++--- MD5 | 20 ++++----- NEWS.md | 5 ++ R/RcppExports.R | 4 - R/semaphore.r | 82 ++++++++++++++++++++++++++-------------- R/zzz.r | 2 README.md | 8 +-- man/semaphores.Rd | 20 +++++++-- src/RcppExports.cpp | 9 ++-- src/semaphore.cpp | 15 +++++-- tests/testthat/test-semaphore.r | 7 +-- 11 files changed, 120 insertions(+), 64 deletions(-)
Title: '2bit' 'C' Library
Description: A trimmed down copy of the "kent-core source tree"
turned into a 'C' library for manipulation of '.2bit' files.
See <https://genome.ucsc.edu/FAQ/FAQformat.html#format7>
for a quick overview of the '2bit' format. The "kent-core source tree"
can be found here: <https://github.com/ucscGenomeBrowser/kent-core/>.
Only the '.c' and '.h' files from the source tree that are related
to manipulation of '.2bit' files were kept. Note that the package
is primarily useful to developers of other R packages who wish
to use the '2bit' 'C' library in their own 'C'/'C++' code.
Author: Herve Pages [aut, cre],
UC Regents [cph]
Maintainer: Herve Pages <hpages.on.github@gmail.com>
Diff between Rtwobitlib versions 0.3.6 dated 2024-04-24 and 0.3.8 dated 2025-03-18
DESCRIPTION | 6 +- MD5 | 14 +++--- build/vignette.rds |binary inst/doc/Rtwobitlib.Rmd | 4 - inst/doc/Rtwobitlib.html | 106 ++++++++++++++++++++++------------------------- src/kent/NOTES.txt | 18 +++++++ src/kent/common.c | 35 ++++----------- vignettes/Rtwobitlib.Rmd | 4 - 8 files changed, 92 insertions(+), 95 deletions(-)
Title: Implements Pseudo-R2D2 Prior for Ordinal Regression
Description: Implements the pseudo-R2D2 prior for ordinal regression from the paper "Psuedo-R2D2 prior for high-dimensional ordinal regression" by Yanchenko (2025) <doi:10.48550/arXiv.2502.17491>. In particular, it provides code to evaluate the probability distribution function for the cut-points, compute the log-likelihood, calculate the hyper-parameters for the global variance parameter, find the distribution of McFadden's coefficient-of-determination, and fit the model in 'rstan'. Please cite the paper if you use these codes.
Author: Eric Yanchenko [aut, cre]
Maintainer: Eric Yanchenko <eyanchenko@aiu.ac.jp>
Diff between R2D2ordinal versions 1.0.0 dated 2025-02-27 and 1.0.1 dated 2025-03-18
DESCRIPTION | 6 - MD5 | 14 +- inst/doc/overview.html | 8 - inst/stan/r2d2ord.stan | 6 - src/stanExports_r2d2ord.h | 72 ++++++------- vignettes/overview_files/figure-html/unnamed-chunk-4-1.png |binary vignettes/overview_files/figure-html/unnamed-chunk-4-2.png |binary vignettes/overview_files/figure-html/unnamed-chunk-4-3.png |binary 8 files changed, 54 insertions(+), 52 deletions(-)
Title: Routines for L1 Estimation
Description: L1 estimation for linear regression using Barrodale and Roberts' method
<doi:10.1145/355616.361024> and the EM algorithm <doi:10.1023/A:1020759012226>.
Estimation of mean and covariance matrix using the multivariate Laplace distribution,
density, distribution function, quantile function and random number generation
for univariate and multivariate Laplace distribution <doi:10.1080/03610929808832115>.
Implementation of Naik and Plungpongpun <doi:10.1007/0-8176-4487-3_7> for the
Generalized spatial median estimator is included.
Author: Felipe Osorio [aut, cre] ,
Tymoteusz Wolodzko [aut]
Maintainer: Felipe Osorio <faosorios.stat@gmail.com>
Diff between L1pack versions 0.50 dated 2024-09-08 and 0.52 dated 2025-03-18
ChangeLog | 3 +++ DESCRIPTION | 14 +++++++------- MD5 | 10 ++++++---- NAMESPACE | 8 ++++++-- R/plot.R |only inst/CITATION | 6 +++--- man/envelope.Rd |only 7 files changed, 25 insertions(+), 16 deletions(-)
Title: Highest Quality GIF Encoder
Description: Multi-threaded GIF encoder written in Rust: <https://gif.ski/>.
Converts images to GIF animations using pngquant's efficient cross-frame
palettes and temporal dithering with thousands of colors per frame.
Author: Jeroen Ooms [aut, cre] ,
Kornel Lesinski [aut] ,
Authors of the dependency Rust crates [aut]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between gifski versions 1.32.0-1 dated 2024-10-13 and 1.32.0-2 dated 2025-03-18
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS | 3 +++ inst/AUTHORS | 2 +- src/Makevars | 7 ++++--- src/Makevars.ucrt | 6 +++--- src/myrustlib/vendor.tar.xz |binary 7 files changed, 20 insertions(+), 16 deletions(-)
Title: Summarise and Visualise Characteristics of Patients in the OMOP
CDM
Description: Summarise and visualise the characteristics of patients in data
mapped to the Observational Medical Outcomes Partnership (OMOP) common data
model (CDM).
Author: Marti Catala [aut, cre] ,
Yuchen Guo [aut] ,
Mike Du [ctb] ,
Kim Lopez-Guell [aut] ,
Edward Burn [aut] ,
Nuria Mercade-Besora [aut] ,
Marta Alcalde [aut]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between CohortCharacteristics versions 0.4.0 dated 2024-11-26 and 0.5.0 dated 2025-03-18
DESCRIPTION | 23 MD5 | 68 - NEWS.md | 18 R/benchmarkCohortCharacteristics.R | 4 R/plotCohortAttrition.R | 546 +++++++------ R/plotCohortOverlap.R | 63 + R/summariseCharacteristics.R | 216 +++-- R/summariseCohortOverlap.R | 2 R/summariseCohortTiming.R | 2 R/summariseLargeScaleCharacteristics.R | 44 - R/table.R | 11 R/tableLargeScaleCharacteristics.R | 2 inst/doc/summarise_characteristics.R | 3 inst/doc/summarise_characteristics.Rmd | 3 inst/doc/summarise_characteristics.html | 602 +++++++-------- inst/doc/summarise_cohort_overlap.R | 3 inst/doc/summarise_cohort_overlap.Rmd | 3 inst/doc/summarise_cohort_overlap.html | 224 ++--- inst/doc/summarise_cohort_timing.R | 3 inst/doc/summarise_cohort_timing.Rmd | 3 inst/doc/summarise_cohort_timing.html | 220 ++--- inst/doc/summarise_large_scale_characteristics.R | 3 inst/doc/summarise_large_scale_characteristics.Rmd | 3 inst/doc/summarise_large_scale_characteristics.html | 742 ++++--------------- man/plotCohortAttrition.Rd | 4 man/summariseCharacteristics.Rd | 6 tests/testthat/test-benchmarkCohortCharacteristics.R | 14 tests/testthat/test-plotCohortAttrition.R | 3 tests/testthat/test-plotCohortOverlap.R | 20 tests/testthat/test-summariseCharacteristics.R | 120 ++- tests/testthat/test-tableLargeScaleCharacteristics.R | 31 vignettes/summarise_characteristics.Rmd | 3 vignettes/summarise_cohort_overlap.Rmd | 3 vignettes/summarise_cohort_timing.Rmd | 3 vignettes/summarise_large_scale_characteristics.Rmd | 3 35 files changed, 1448 insertions(+), 1573 deletions(-)
More information about CohortCharacteristics at CRAN
Permanent link
Title: A Compression Format Optimized for the Web
Description: A lossless compressed data format that uses a combination
of the LZ77 algorithm and Huffman coding <https://www.rfc-editor.org/rfc/rfc7932>.
Brotli is similar in speed to deflate (gzip) but offers more dense compression.
Author: Jeroen Ooms [aut, cre] ,
Google, Inc [aut, cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between brotli versions 1.3.1 dated 2024-10-04 and 1.3.2 dated 2025-03-18
DESCRIPTION | 6 ++--- MD5 | 12 +++++----- NEWS | 3 ++ build/vignette.rds |binary inst/doc/benchmarks.R | 52 +++++++++++++++++++++++------------------------ inst/doc/benchmarks.html | 15 +++++-------- src/Makevars | 6 ++--- 7 files changed, 47 insertions(+), 47 deletions(-)
Title: Project Environments
Description: A dependency management toolkit for R. Using 'renv', you can create
and manage project-local R libraries, save the state of these libraries to
a 'lockfile', and later restore your library as required. Together, these
tools can help make your projects more isolated, portable, and reproducible.
Author: Kevin Ushey [aut, cre] ,
Hadley Wickham [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between renv versions 1.1.2 dated 2025-03-02 and 1.1.3 dated 2025-03-18
renv-1.1.2/renv/inst/repos/src/contrib/renv_1.1.2.tar.gz |only renv-1.1.3/renv/DESCRIPTION | 6 renv-1.1.3/renv/MD5 | 89 ++++++------ renv-1.1.3/renv/NEWS.md | 33 ++++ renv-1.1.3/renv/R/available-packages.R | 68 +++++++++ renv-1.1.3/renv/R/bootstrap.R | 35 +++- renv-1.1.3/renv/R/cache.R | 4 renv-1.1.3/renv/R/config.R | 41 ++--- renv-1.1.3/renv/R/data_frame.R | 2 renv-1.1.3/renv/R/dependencies.R | 50 +++++- renv-1.1.3/renv/R/description.R | 10 - renv-1.1.3/renv/R/hash.R | 27 --- renv-1.1.3/renv/R/hydrate.R | 18 +- renv-1.1.3/renv/R/install.R | 32 ++-- renv-1.1.3/renv/R/json-read.R | 60 ++++---- renv-1.1.3/renv/R/mask.R | 5 renv-1.1.3/renv/R/md5sum.R |only renv-1.1.3/renv/R/platform.R | 3 renv-1.1.3/renv/R/remotes.R | 5 renv-1.1.3/renv/R/renvignore.R | 80 ++++++++++- renv-1.1.3/renv/R/retrieve.R | 25 ++- renv-1.1.3/renv/R/settings.R | 8 - renv-1.1.3/renv/R/snapshot.R | 14 - renv-1.1.3/renv/R/sysreqs.R | 109 +++++++++++---- renv-1.1.3/renv/R/update.R | 15 +- renv-1.1.3/renv/R/utils.R | 3 renv-1.1.3/renv/README.md | 7 renv-1.1.3/renv/inst/repos/src/contrib/PACKAGES | 4 renv-1.1.3/renv/inst/repos/src/contrib/PACKAGES.gz |binary renv-1.1.3/renv/inst/repos/src/contrib/PACKAGES.rds |binary renv-1.1.3/renv/inst/repos/src/contrib/renv_1.1.3.tar.gz |only renv-1.1.3/renv/inst/resources/activate.R | 95 +++++++------ renv-1.1.3/renv/inst/sysreqs/sysreqs.json | 38 ++++- renv-1.1.3/renv/man/dependencies.Rd | 22 +++ renv-1.1.3/renv/man/install.Rd | 6 renv-1.1.3/renv/man/settings.Rd | 8 - renv-1.1.3/renv/man/update.Rd | 5 renv-1.1.3/renv/tests/testthat/_snaps/sysreqs.md |only renv-1.1.3/renv/tests/testthat/helper-setup.R | 2 renv-1.1.3/renv/tests/testthat/test-dependencies.R | 7 renv-1.1.3/renv/tests/testthat/test-enumerate.R | 34 ++-- renv-1.1.3/renv/tests/testthat/test-hydrate.R | 22 +++ renv-1.1.3/renv/tests/testthat/test-json.R | 15 ++ renv-1.1.3/renv/tests/testthat/test-md5.R |only renv-1.1.3/renv/tests/testthat/test-paths.R | 2 renv-1.1.3/renv/tests/testthat/test-renvignore.R | 37 +++++ renv-1.1.3/renv/tests/testthat/test-sysreqs.R | 57 +++++++ renv-1.1.3/renv/tests/testthat/test-update.R | 24 +++ 48 files changed, 831 insertions(+), 296 deletions(-)
Title: Machine Learning Model Evaluation for 'h2o' Package
Description: Enhances the H2O platform by providing tools for detailed evaluation of machine learning models. It includes functions for bootstrapped performance evaluation, extended F-score calculations, and various other metrics, aimed at improving model assessment.
Author: E. F. Haghish [aut, cre, cph]
Maintainer: E. F. Haghish <haghish@hotmail.com>
Diff between h2otools versions 0.3 dated 2023-05-04 and 0.4 dated 2025-03-18
DESCRIPTION | 19 ++++++++----------- MD5 | 12 +++++++++--- NAMESPACE | 5 +++++ R/bootImportance.R |only R/capture.R |only R/h2o.get_ids.R |only README.md | 22 ++++++++++++++++++---- man/bootImportance.Rd |only man/capture.Rd |only man/h2o.get_ids.Rd |only 10 files changed, 40 insertions(+), 18 deletions(-)
Title: A Fast, Easy-to-Use Database Interface
Description: Provides select, insert, update, upsert, and delete database operations. Supports 'PostgreSQL', 'MySQL', 'SQLite', and more, and plays nicely with the 'DBI' package.
Author: Andrew Kane [aut, cre]
Maintainer: Andrew Kane <andrew@chartkick.com>
Diff between dbx versions 0.3.2 dated 2024-06-03 and 0.4.0 dated 2025-03-18
DESCRIPTION | 10 ++-- LICENSE | 2 MD5 | 43 ++++++++++---------- NEWS.md | 8 +++ R/connect.R | 2 R/delete.R | 2 R/helpers.R | 59 +++++++++++++++++----------- R/insert.R | 2 R/select.R | 15 ++++++- R/upsert.R | 11 ++++- README.md | 52 ++++++++++++++++++++++-- tests/testthat/helper-is.R | 12 +++++ tests/testthat/helper-run-data-type-tests.R | 26 ++++++++---- tests/testthat/helper-run-execute-tests.R | 2 tests/testthat/helper-run-insert-tests.R | 8 ++- tests/testthat/helper-run-upsert-tests.R | 54 ++++++++++++++++++++++++- tests/testthat/test-duckdb.R |only tests/testthat/test-mariadb.R | 2 tests/testthat/test-mysql.R | 3 - tests/testthat/test-odbc-mysql.R | 17 ++++++-- tests/testthat/test-odbc-postgres.R | 14 +++++- tests/testthat/test-odbc-sqlserver.R | 16 ++++++- tests/testthat/test-postgresql.R | 6 +- 23 files changed, 276 insertions(+), 90 deletions(-)
Title: Phase I/II CRM Based Drug Combination Design
Description: Implements the adaptive designs for integrated phase I/II trials of drug combinations via continual reassessment method (CRM) to evaluate toxicity and efficacy simultaneously for each enrolled patient cohort based on Bayesian inference. It supports patients assignment guidance in a single trial using current enrolled data, as well as conducting extensive simulation studies to evaluate operating characteristics before the trial starts. It includes various link functions such as empiric, one-parameter logistic, two-parameter logistic, and hyperbolic tangent, as well as considering multiple prior distributions of the parameters like normal distribution, gamma distribution and exponential distribution to accommodate diverse clinical scenarios. Method using Bayesian framework with empiric link function is described in: Wages and Conaway (2014) <doi:10.1002/sim.6097>.
Author: Junying Wang [cre, aut],
Song Wu [aut],
Jie Yang [aut]
Maintainer: Junying Wang <junying.wang@stonybrook.edu>
Diff between crm12Comb versions 0.1.9 dated 2024-12-09 and 0.1.10 dated 2025-03-18
DESCRIPTION | 6 MD5 | 16 +- R/est.R | 8 - inst/doc/crm12Comb.R | 40 +++++ inst/doc/crm12Comb.Rmd | 61 ++++++++ inst/doc/crm12Comb.html | 351 ++++++++++++++++++++++++++++++++++-------------- man/efficacy_est.Rd | 2 man/toxicity_est.Rd | 2 vignettes/crm12Comb.Rmd | 61 ++++++++ 9 files changed, 429 insertions(+), 118 deletions(-)
Title: Sitree Extensions
Description: Provides extensions for package 'sitree' for allometric variables, growth, mortality, recruitment, management, tree removal and external modifiers functions.
Author: Clara Anton Fernandez [aut] ,
Ignacio Sevillano [cre]
Maintainer: Ignacio Sevillano <ignacio.sevillano@nibio.no>
Diff between sitreeE versions 0.0-8 dated 2021-11-23 and 0.0-9 dated 2025-03-18
DESCRIPTION | 22 +++++--- MD5 | 6 +- R/Biomass_sitree.R | 138 ++++++++++++++++++++++++++--------------------------- R/Volume_sitree.R | 118 ++++++++++++++++++++++----------------------- 4 files changed, 145 insertions(+), 139 deletions(-)
Title: Gaussian Model Invariant by Permutation Symmetry
Description: Find the permutation symmetry group such that the covariance
matrix of the given data is approximately invariant under it.
Discovering such a permutation decreases the number of observations
needed to fit a Gaussian model, which is of great use when it is
smaller than the number of variables. Even if that is not the case,
the covariance matrix found with 'gips' approximates the actual
covariance with less statistical error. The methods implemented in
this package are described in Graczyk et al. (2022)
<doi:10.1214/22-AOS2174>. Documentation about 'gips' is
provided via its website at <https://przechoj.github.io/gips/> and
the paper by Chojecki, Morgen, Kołodziejek
(2025, <doi:10.18637/jss.v112.i07>).
Author: Adam Przemyslaw Chojecki [aut, cre],
Pawel Morgen [aut],
Bartosz Kolodziejek [aut]
Maintainer: Adam Przemyslaw Chojecki <adam.prze.choj@gmail.com>
Diff between gips versions 1.2.1 dated 2023-08-12 and 1.2.3 dated 2025-03-18
DESCRIPTION | 13 - MD5 | 86 +++---- NAMESPACE | 1 NEWS.md | 26 ++ R/calculate_gamma_function.R | 14 - R/estimate_probabilities.R | 17 - R/find_MAP.R | 77 +++--- R/get_structure_constants.R | 65 +++-- R/gips_class.R | 295 +++++++++++++++++++------ R/log_posteriori_of_gips.R | 6 R/project_matrix.R | 8 R/utils.R | 13 + README.md | 6 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION |only inst/WORDLIST | 3 inst/doc/Optimizers.R | 88 +++---- inst/doc/Optimizers.Rmd | 10 inst/doc/Optimizers.html | 58 ++-- inst/doc/Theory.R | 10 inst/doc/Theory.Rmd | 8 inst/doc/Theory.html | 35 +- inst/doc/gips.R | 2 inst/doc/gips.Rmd | 8 inst/doc/gips.html | 35 +- man/AIC.gips.Rd | 4 man/calculate_gamma_function.Rd | 4 man/figures/README-example_mean_known1_1-1.png |binary man/figures/README-example_mean_known3_1-1.png |binary man/figures/README-example_mean_known6-1.png |binary man/figures/README-example_mean_unknown2-1.png |binary man/figures/README-example_mean_unknown4-1.png |binary man/find_MAP.Rd | 12 - man/gips.Rd | 2 man/logLik.gips.Rd | 20 + man/plot.gips.Rd | 11 man/summary.gips.Rd | 32 ++ tests/testthat/Rplots.pdf |only tests/testthat/test-find_MAP.R | 4 tests/testthat/test-get_structure_constants.R | 16 - tests/testthat/test-gips_class.R | 44 ++- vignettes/Optimizers.Rmd | 10 vignettes/Theory.Rmd | 8 vignettes/gips.Rmd | 8 45 files changed, 669 insertions(+), 390 deletions(-)
Title: Sudoku as an Experimental Design
Description: Sudoku designs (Bailey et al., 2008<doi:10.1080/00029890.2008.11920542>) can be used as experimental designs which tackle one extra source of variation than conventional Latin square designs. Although Sudoku designs are similar to Latin square designs, only addition is the region concept. Some very important functions related to row-column designs as well as block designs along with basic functions are included in this package.
Author: Ashutosh Dalal [aut, cre],
Cini Varghese [aut, ctb],
Rajender Parsad [aut, ctb],
Mohd Harun [aut, ctb]
Maintainer: Ashutosh Dalal <ashutosh.dalal97@gmail.com>
Diff between SudokuDesigns versions 1.1.0 dated 2024-11-28 and 1.2.0 dated 2025-03-18
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/Check_MP_Inverse.R | 46 +++++++++++++++++++++++++++++----------------- 3 files changed, 34 insertions(+), 22 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of
use. Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions. Various
matrix decompositions are provided through optional integration with
LAPACK and ATLAS libraries. The 'RcppArmadillo' package includes the
header files from the templated 'Armadillo' library. Thus users do
not need to install 'Armadillo' itself in order to use
'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is licensed
under Apache License 2; previous releases were under licensed as MPL
2.0 from version 3.800.0 onwards and LGPL-3 prior to that;
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed
under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Dirk Eddelbuettel [aut, cre] ,
Romain Francois [aut] ,
Doug Bates [aut] ,
Binxiang Ni [aut],
Conrad Sanderson [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 14.2.3-1 dated 2025-02-06 and 14.4.0-1 dated 2025-03-18
ChangeLog | 49 DESCRIPTION | 8 MD5 | 152 +- R/RcppArmadillo.package.skeleton.R | 19 build/partial.rdb |binary build/vignette.rds |binary configure | 18 configure.ac | 2 inst/NEWS.Rd | 29 inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-sparseMatrix.pdf |binary inst/include/armadillo_bits/CubeToMatOp_bones.hpp | 4 inst/include/armadillo_bits/Cube_meat.hpp | 48 inst/include/armadillo_bits/GenCube_bones.hpp | 6 inst/include/armadillo_bits/Gen_bones.hpp | 4 inst/include/armadillo_bits/Mat_meat.hpp | 64 + inst/include/armadillo_bits/OpCube_bones.hpp | 10 inst/include/armadillo_bits/Op_bones.hpp | 8 inst/include/armadillo_bits/Proxy.hpp | 106 +- inst/include/armadillo_bits/ProxyCube.hpp | 20 inst/include/armadillo_bits/SpOp_bones.hpp | 8 inst/include/armadillo_bits/SpProxy.hpp | 68 - inst/include/armadillo_bits/SpToDOp_bones.hpp | 8 inst/include/armadillo_bits/arma_forward.hpp | 1 inst/include/armadillo_bits/arma_rng.hpp | 30 inst/include/armadillo_bits/arma_version.hpp | 6 inst/include/armadillo_bits/arrayops_meat.hpp | 11 inst/include/armadillo_bits/auxlib_meat.hpp | 4 inst/include/armadillo_bits/diagview_bones.hpp | 2 inst/include/armadillo_bits/eGlueCube_bones.hpp | 6 inst/include/armadillo_bits/eGlue_bones.hpp | 4 inst/include/armadillo_bits/eOpCube_bones.hpp | 11 inst/include/armadillo_bits/eOp_bones.hpp | 9 inst/include/armadillo_bits/field_bones.hpp | 24 inst/include/armadillo_bits/field_meat.hpp | 246 +++- inst/include/armadillo_bits/fn_accu.hpp | 186 +++ inst/include/armadillo_bits/fn_conv_to.hpp | 23 inst/include/armadillo_bits/fn_dot.hpp | 2 inst/include/armadillo_bits/fn_elem.hpp | 184 +-- inst/include/armadillo_bits/fn_reshape.hpp | 49 inst/include/armadillo_bits/fn_resize.hpp | 52 + inst/include/armadillo_bits/glue_solve_meat.hpp | 7 inst/include/armadillo_bits/glue_times_meat.hpp | 158 +-- inst/include/armadillo_bits/memory.hpp | 6 inst/include/armadillo_bits/mtGlueCube_bones.hpp | 6 inst/include/armadillo_bits/mtGlue_bones.hpp | 6 inst/include/armadillo_bits/mtOpCube_bones.hpp | 14 inst/include/armadillo_bits/mtOp_bones.hpp | 12 inst/include/armadillo_bits/mtSpOp_bones.hpp | 10 inst/include/armadillo_bits/mtSpReduceOp_bones.hpp | 6 inst/include/armadillo_bits/op_all_bones.hpp | 6 inst/include/armadillo_bits/op_all_meat.hpp | 153 +- inst/include/armadillo_bits/op_any_bones.hpp | 6 inst/include/armadillo_bits/op_any_meat.hpp | 126 +- inst/include/armadillo_bits/op_htrans_meat.hpp | 54 - inst/include/armadillo_bits/op_mean_meat.hpp | 4 inst/include/armadillo_bits/op_misc_meat.hpp | 22 inst/include/armadillo_bits/op_reshape_meat.hpp | 47 inst/include/armadillo_bits/op_resize_meat.hpp | 36 inst/include/armadillo_bits/op_sort_bones.hpp | 10 inst/include/armadillo_bits/op_sort_index_bones.hpp | 23 inst/include/armadillo_bits/op_sort_index_meat.hpp | 71 - inst/include/armadillo_bits/op_sort_meat.hpp | 229 ++-- inst/include/armadillo_bits/op_sp_sum_bones.hpp | 3 inst/include/armadillo_bits/op_sp_sum_meat.hpp | 82 + inst/include/armadillo_bits/op_strans_meat.hpp | 54 - inst/include/armadillo_bits/op_sum_bones.hpp | 27 inst/include/armadillo_bits/op_sum_meat.hpp | 290 ++++- inst/include/armadillo_bits/op_trimat_bones.hpp | 4 inst/include/armadillo_bits/op_trimat_meat.hpp | 112 +- inst/include/armadillo_bits/op_vectorise_meat.hpp | 63 - inst/include/armadillo_bits/spdiagview_bones.hpp | 2 inst/include/armadillo_bits/spop_misc_meat.hpp | 16 inst/include/armadillo_bits/traits.hpp | 20 inst/include/armadillo_bits/unwrap.hpp | 1034 -------------------- man/RcppArmadillo.package.skeleton.Rd | 45 vignettes/pdf/RcppArmadillo-sparseMatrix.pdf |binary 77 files changed, 2116 insertions(+), 2129 deletions(-)
Title: Triangle Meshes and Related Geometry Tools
Description: Generate planar and spherical triangle meshes,
compute finite element calculations for 1- and 2-dimensional flat and curved
manifolds with associated basis function spaces, methods for lines and
polygons, and transparent handling of coordinate reference systems and
coordinate transformation, including 'sf' and 'sp' geometries. The core
'fmesher' library code was originally part of the 'INLA' package, and
implements parts of "Triangulations and Applications" by
Hjelle and Daehlen (2006) <doi:10.1007/3-540-33261-8>.
Author: Finn Lindgren [aut, cre, cph] ,
Seaton Andy [ctb] ,
Suen Man Ho [ctb] ,
Fabian E. Bachl [ctb]
Maintainer: Finn Lindgren <finn.lindgren@gmail.com>
Diff between fmesher versions 0.2.0 dated 2024-11-06 and 0.3.0 dated 2025-03-18
fmesher-0.2.0/fmesher/man/fm_evaluator_helpers.Rd |only fmesher-0.3.0/fmesher/DESCRIPTION | 21 fmesher-0.3.0/fmesher/MD5 | 215 - fmesher-0.3.0/fmesher/NAMESPACE | 104 fmesher-0.3.0/fmesher/NEWS.md | 54 fmesher-0.3.0/fmesher/R/RcppExports.R | 47 fmesher-0.3.0/fmesher/R/bary.R | 841 +++++ fmesher-0.3.0/fmesher/R/basis.R |only fmesher-0.3.0/fmesher/R/bbox.R | 66 fmesher-0.3.0/fmesher/R/crs.R | 125 fmesher-0.3.0/fmesher/R/diameter.R | 34 fmesher-0.3.0/fmesher/R/evaluator.R | 1601 ----------- fmesher-0.3.0/fmesher/R/fem.R | 118 fmesher-0.3.0/fmesher/R/fm.R | 19 fmesher-0.3.0/fmesher/R/fmesher.R | 66 fmesher-0.3.0/fmesher/R/ggplot.R | 29 fmesher-0.3.0/fmesher/R/integration.R | 208 - fmesher-0.3.0/fmesher/R/lattice_2d.R | 24 fmesher-0.3.0/fmesher/R/lattice_Nd.R |only fmesher-0.3.0/fmesher/R/list.R | 10 fmesher-0.3.0/fmesher/R/manifold.R | 23 fmesher-0.3.0/fmesher/R/matern.R | 3 fmesher-0.3.0/fmesher/R/mesh.R | 50 fmesher-0.3.0/fmesher/R/mesh_1d.R | 47 fmesher-0.3.0/fmesher/R/mesh_2d.R | 43 fmesher-0.3.0/fmesher/R/mesh_3d.R |only fmesher-0.3.0/fmesher/R/mesh_assessment.R |only fmesher-0.3.0/fmesher/R/nonconvex_hull.R | 4 fmesher-0.3.0/fmesher/R/print.R | 182 + fmesher-0.3.0/fmesher/R/segm.R | 9 fmesher-0.3.0/fmesher/R/sf_mesh.R | 19 fmesher-0.3.0/fmesher/R/sf_utils.R | 2 fmesher-0.3.0/fmesher/R/split_lines.R | 12 fmesher-0.3.0/fmesher/R/utils.R | 26 fmesher-0.3.0/fmesher/README.md | 2 fmesher-0.3.0/fmesher/build/vignette.rds |binary fmesher-0.3.0/fmesher/inst/doc/articles.html | 4 fmesher-0.3.0/fmesher/inst/doc/basic_use.R | 11 fmesher-0.3.0/fmesher/inst/doc/basic_use.Rmd | 11 fmesher-0.3.0/fmesher/inst/doc/basic_use.html | 130 fmesher-0.3.0/fmesher/inst/doc/custom_classes.R |only fmesher-0.3.0/fmesher/inst/doc/custom_classes.Rmd |only fmesher-0.3.0/fmesher/inst/doc/custom_classes.html |only fmesher-0.3.0/fmesher/inst/doc/inla_conversion.R | 75 fmesher-0.3.0/fmesher/inst/doc/inla_conversion.Rmd | 84 fmesher-0.3.0/fmesher/inst/doc/inla_conversion.html | 162 - fmesher-0.3.0/fmesher/man/as.triangles3d.fm_mesh_3d.Rd |only fmesher-0.3.0/fmesher/man/figures/README-example2-plot-1.png |binary fmesher-0.3.0/fmesher/man/fm_CRS_sp.Rd | 9 fmesher-0.3.0/fmesher/man/fm_as_fm.Rd | 11 fmesher-0.3.0/fmesher/man/fm_as_lattice_2d.Rd | 3 fmesher-0.3.0/fmesher/man/fm_as_lattice_Nd.Rd |only fmesher-0.3.0/fmesher/man/fm_as_mesh_1d.Rd | 3 fmesher-0.3.0/fmesher/man/fm_as_mesh_2d.Rd | 13 fmesher-0.3.0/fmesher/man/fm_as_mesh_3d.Rd |only fmesher-0.3.0/fmesher/man/fm_as_segm.Rd | 3 fmesher-0.3.0/fmesher/man/fm_as_sfc.Rd | 15 fmesher-0.3.0/fmesher/man/fm_as_tensor.Rd | 3 fmesher-0.3.0/fmesher/man/fm_assess.Rd |only fmesher-0.3.0/fmesher/man/fm_bary.Rd | 96 fmesher-0.3.0/fmesher/man/fm_bary_loc.Rd |only fmesher-0.3.0/fmesher/man/fm_bary_simplex.Rd |only fmesher-0.3.0/fmesher/man/fm_basis.Rd | 94 fmesher-0.3.0/fmesher/man/fm_basis_helpers.Rd | 6 fmesher-0.3.0/fmesher/man/fm_bbox.Rd | 30 fmesher-0.3.0/fmesher/man/fm_block.Rd | 9 fmesher-0.3.0/fmesher/man/fm_centroids.Rd | 2 fmesher-0.3.0/fmesher/man/fm_contains.Rd | 2 fmesher-0.3.0/fmesher/man/fm_cprod.Rd | 10 fmesher-0.3.0/fmesher/man/fm_crs.Rd | 15 fmesher-0.3.0/fmesher/man/fm_diameter.Rd | 21 fmesher-0.3.0/fmesher/man/fm_dof.Rd | 9 fmesher-0.3.0/fmesher/man/fm_evaluate.Rd | 44 fmesher-0.3.0/fmesher/man/fm_fem.Rd | 12 fmesher-0.3.0/fmesher/man/fm_gmrf.Rd | 3 fmesher-0.3.0/fmesher/man/fm_int.Rd | 31 fmesher-0.3.0/fmesher/man/fm_int_mesh_2d.Rd | 5 fmesher-0.3.0/fmesher/man/fm_int_mesh_2d_core.Rd | 2 fmesher-0.3.0/fmesher/man/fm_is_within.Rd | 12 fmesher-0.3.0/fmesher/man/fm_lattice_2d.Rd | 9 fmesher-0.3.0/fmesher/man/fm_lattice_Nd.Rd |only fmesher-0.3.0/fmesher/man/fm_manifold.Rd | 6 fmesher-0.3.0/fmesher/man/fm_mesh_1d.Rd | 3 fmesher-0.3.0/fmesher/man/fm_mesh_2d.Rd | 9 fmesher-0.3.0/fmesher/man/fm_mesh_3d.Rd |only fmesher-0.3.0/fmesher/man/fm_nonconvex_hull_inla.Rd | 2 fmesher-0.3.0/fmesher/man/fm_qinv.Rd | 27 fmesher-0.3.0/fmesher/man/fm_raw_basis.Rd | 2 fmesher-0.3.0/fmesher/man/fm_segm.Rd | 6 fmesher-0.3.0/fmesher/man/fm_simplify.Rd | 3 fmesher-0.3.0/fmesher/man/fm_split_lines.Rd | 5 fmesher-0.3.0/fmesher/man/fm_tensor.Rd | 3 fmesher-0.3.0/fmesher/man/fm_transform.Rd | 9 fmesher-0.3.0/fmesher/man/fm_vertex_projection.Rd | 8 fmesher-0.3.0/fmesher/man/fmesher-deprecated.Rd | 27 fmesher-0.3.0/fmesher/man/fmesher-print.Rd | 12 fmesher-0.3.0/fmesher/man/fmesher_bary.Rd | 3 fmesher-0.3.0/fmesher/man/fmesher_bary3d.Rd |only fmesher-0.3.0/fmesher/man/fmesher_mesh3d.Rd |only fmesher-0.3.0/fmesher/man/geom_fm.Rd | 12 fmesher-0.3.0/fmesher/src/RcppExports.cpp | 29 fmesher-0.3.0/fmesher/src/Rcpp_interface.cc | 620 ++-- fmesher-0.3.0/fmesher/src/fmesher.h | 1 fmesher-0.3.0/fmesher/src/fmesher_helpers.cc | 25 fmesher-0.3.0/fmesher/src/fmesher_helpers.h | 11 fmesher-0.3.0/fmesher/src/locator.cc | 84 fmesher-0.3.0/fmesher/src/locator.h | 26 fmesher-0.3.0/fmesher/src/mesh.cc | 2 fmesher-0.3.0/fmesher/src/mesh.h | 5 fmesher-0.3.0/fmesher/src/mesh3.cc |only fmesher-0.3.0/fmesher/src/mesh3.h |only fmesher-0.3.0/fmesher/src/meshc.cc | 6 fmesher-0.3.0/fmesher/src/vector.h | 222 + fmesher-0.3.0/fmesher/tests/testthat/test-barycentric.R | 16 fmesher-0.3.0/fmesher/tests/testthat/test-integration.R | 14 fmesher-0.3.0/fmesher/tests/testthat/test-rcdt_2d.R | 57 fmesher-0.3.0/fmesher/vignettes/basic_use.Rmd | 11 fmesher-0.3.0/fmesher/vignettes/custom_classes.Rmd |only fmesher-0.3.0/fmesher/vignettes/inla_conversion.Rmd | 84 119 files changed, 3391 insertions(+), 2912 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-03-17 1.0.0
2021-05-20 0.1.4