Sat, 22 Mar 2025

Package wnl updated to version 0.8.3 with previous version 0.8.2 dated 2025-02-21

Title: Minimization Tool for Pharmacokinetic-Pharmacodynamic Data Analysis
Description: This is a set of minimization tools (maximum likelihood estimation and least square fitting) to solve examples in the Johan Gabrielsson and Dan Weiner's book "Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications" 5th ed. (ISBN:9198299107). Examples include linear and nonlinear compartmental model, turn-over model, single or multiple dosing bolus/infusion/oral models, allometry, toxicokinetics, reversible metabolism, in-vitro/in-vivo extrapolation, enterohepatic circulation, metabolite modeling, Emax model, inhibitory model, tolerance model, oscillating response model, enantiomer interaction model, effect compartment model, drug-drug interaction model, receptor occupancy model, and rebound phenomena model.
Author: Kyun-Seop Bae [aut, cre, cph]
Maintainer: Kyun-Seop Bae <k@acr.kr>

Diff between wnl versions 0.8.2 dated 2025-02-21 and 0.8.3 dated 2025-03-22

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Package poputils updated to version 0.4.0 with previous version 0.3.3 dated 2024-09-13

Title: Demographic Analysis and Data Manipulation
Description: Perform tasks commonly encountered when preparing and analysing demographic data. Some functions are intended for end users, and others for developers. Includes functions for working with life tables.
Author: John Bryant [aut, cre], Bayesian Demography Limited [cph]
Maintainer: John Bryant <john@bayesiandemography.com>

Diff between poputils versions 0.3.3 dated 2024-09-13 and 0.4.0 dated 2025-03-22

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Package asm updated to version 0.2.2 with previous version 0.2.1 dated 2025-01-28

Title: Optimal Convex M-Estimation for Linear Regression via Antitonic Score Matching
Description: Performs linear regression with respect to a data-driven convex loss function that is chosen to minimize the asymptotic covariance of the resulting M-estimator. The convex loss function is estimated in 5 steps: (1) form an initial OLS (ordinary least squares) or LAD (least absolute deviation) estimate of the regression coefficients; (2) use the resulting residuals to obtain a kernel estimator of the error density; (3) estimate the score function of the errors by differentiating the logarithm of the kernel density estimate; (4) compute the L2 projection of the estimated score function onto the set of decreasing functions; (5) take a negative antiderivative of the projected score function estimate. Newton's method (with Hessian modification) is then used to minimize the convex empirical risk function. Further details of the method are given in Feng et al. (2024) <doi:10.48550/arXiv.2403.16688>.
Author: Yu-Chun Kao [aut], Oliver Y. Feng [aut], Lucy Xia [aut], Yang Feng [aut], Min Xu [aut, cre], Richard J. Samworth [aut]
Maintainer: Min Xu <min.cut@gmail.com>

Diff between asm versions 0.2.1 dated 2025-01-28 and 0.2.2 dated 2025-03-22

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Package ggfootball updated to version 0.2.1 with previous version 0.2.0 dated 2025-01-31

Title: Plotting Football Matches Expected Goals (xG) Stats with 'Understat' Data
Description: Scrapes football match shots data from 'Understat' <https://understat.com/> and visualizes it using interactive plots: - A detailed shot map displaying the location, type, and xG value of shots taken by both teams. - An xG timeline chart showing the cumulative xG for each team over time, annotated with the details of scored goals.
Author: Aymen Nasri [aut, cre, cph]
Maintainer: Aymen Nasri <aymennasrii@proton.me>

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Package featureflag updated to version 0.2.0 with previous version 0.1.0 dated 2021-02-18

Title: Turn Features On and Off using Feature Flags
Description: Feature flags allow developers to turn features of their software on and off in form of configuration. This package provides functions for creating feature flags in code. It exposes an interface for defining own feature flags which are enabled based on custom criteria.
Author: Ryszard Szymanski [aut, cre]
Maintainer: Ryszard Szymanski <ryszard.szymanski@outlook.com>

Diff between featureflag versions 0.1.0 dated 2021-02-18 and 0.2.0 dated 2025-03-22

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Package tailTransform updated to version 2.0.0 with previous version 1.0.4 dated 2022-03-21

Title: Symmetric Transformation of Tails for Plotting Differences
Description: When plotting treated-minus-control differences, after-minus-before changes, or difference-in-differences, the ttrans() function symmetrically transforms the positive and negative tails to aid plotting. The package includes an observational study with three control groups and an unaffected outcome; see Rosenbaum (2022) <doi:10.1080/00031305.2022.2063944>.
Author: Paul R. Rosenbaum [aut, cre]
Maintainer: Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>

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Package qpdf updated to version 1.3.5 with previous version 1.3.4 dated 2024-10-04

Title: Split, Combine and Compress PDF Files
Description: Content-preserving transformations transformations of PDF files such as split, combine, and compress. This package interfaces directly to the 'qpdf' C++ library <https://qpdf.sourceforge.io/> and does not require any command line utilities. Note that 'qpdf' does not read actual content from PDF files: to extract text and data you need the 'pdftools' package.
Author: Jeroen Ooms [aut, cre] , Ben Raymond [ctb], Jay Berkenbilt [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>

Diff between qpdf versions 1.3.4 dated 2024-10-04 and 1.3.5 dated 2025-03-22

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Package hunspell updated to version 3.0.6 with previous version 3.0.5 dated 2024-10-04

Title: High-Performance Stemmer, Tokenizer, and Spell Checker
Description: Low level spell checker and morphological analyzer based on the famous 'hunspell' library <https://hunspell.github.io>. The package can analyze or check individual words as well as parse text, latex, html or xml documents. For a more user-friendly interface use the 'spelling' package which builds on this package to automate checking of files, documentation and vignettes in all common formats.
Author: Jeroen Ooms [aut, cre], Authors of libhunspell [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>

Diff between hunspell versions 3.0.5 dated 2024-10-04 and 3.0.6 dated 2025-03-22

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Package cld2 updated to version 1.2.6 with previous version 1.2.5 dated 2024-10-04

Title: Google's Compact Language Detector 2
Description: Bindings to Google's C++ library Compact Language Detector 2 (see <https://github.com/cld2owners/cld2#readme> for more information). Probabilistically detects over 80 languages in plain text or HTML. For mixed-language input it returns the top three detected languages and their approximate proportion of the total classified text bytes (e.g. 80% English and 20% French out of 1000 bytes). There is also a 'cld3' package on CRAN which uses a neural network model instead.
Author: Jeroen Ooms [aut, cre] , Dirk Sites [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>

Diff between cld2 versions 1.2.5 dated 2024-10-04 and 1.2.6 dated 2025-03-22

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Package bayesdfa updated to version 1.3.4 with previous version 1.3.3 dated 2024-02-26

Title: Bayesian Dynamic Factor Analysis (DFA) with 'Stan'
Description: Implements Bayesian dynamic factor analysis with 'Stan'. Dynamic factor analysis is a dimension reduction tool for multivariate time series. 'bayesdfa' extends conventional dynamic factor models in several ways. First, extreme events may be estimated in the latent trend by modeling process error with a student-t distribution. Second, alternative constraints (including proportions are allowed). Third, the estimated dynamic factors can be analyzed with hidden Markov models to evaluate support for latent regimes.
Author: Eric J. Ward [aut, cre], Sean C. Anderson [aut], Luis A. Damiano [aut], Michael J. Malick [aut], Philina A. English [aut], Mary E. Hunsicker, [ctb], Mike A. Litzow [ctb], Mark D. Scheuerell [ctb], Elizabeth E. Holmes [ctb], Nick Tolimieri [ctb], Trus [...truncated...]
Maintainer: Eric J. Ward <eric.ward@noaa.gov>

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Package LCCR updated to version 2.0.1 with previous version 2.0 dated 2024-11-20

Title: Latent Class Capture-Recapture Models
Description: Estimation of latent class models with individual covariates for capture-recapture data. See Bartolucci, F. and Forcina, A. (2022), Estimating the size of a closed population by modeling latent and observed heterogeneity, Biometrics, 80(2), ujae017.
Author: Francesco Bartolucci [aut, cre], Antonio Forcina [aut]
Maintainer: Francesco Bartolucci <francesco.bartolucci@unipg.it>

Diff between LCCR versions 2.0 dated 2024-11-20 and 2.0.1 dated 2025-03-22

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Package timetools updated to version 1.15.4 with previous version 1.15.3 dated 2023-08-29

Title: Seasonal/Sequential (Instants/Durations, Even or not) Time Series
Description: Objects to manipulate sequential and seasonal time series. Sequential time series based on time instants and time duration are handled. Both can be regularly or unevenly spaced (overlapping duration are allowed). Only POSIX* format are used for dates and times. The following classes are provided : 'POSIXcti', 'POSIXctp', 'TimeIntervalDataFrame', 'TimeInstantDataFrame', 'SubtimeDataFrame' ; methods to switch from a class to another and to modify the time support of series (hourly time series to daily time series for instance) are also defined. Tools provided can be used for instance to handle environmental monitoring data (not always produced on a regular time base).
Author: Vladislav Navel [aut, cre]
Maintainer: Vladislav Navel <vnavel@yahoo.fr>

Diff between timetools versions 1.15.3 dated 2023-08-29 and 1.15.4 dated 2025-03-22

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Package JANE updated to version 1.0.0 with previous version 0.2.1 dated 2024-12-19

Title: Just Another Latent Space Network Clustering Algorithm
Description: Fit latent space network cluster models using an expectation-maximization algorithm. Enables flexible modeling of unweighted or weighted network data (with or without noise edges), supporting both directed and undirected networks (with or without degree heterogeneity). Designed to handle large networks efficiently, it allows users to explore network structure through latent space representations, identify clusters within network data, and simulate networks with varying clustering and connectivity patterns.
Author: Alan Arakkal [aut, cre, cph] , Daniel Sewell [aut]
Maintainer: Alan Arakkal <alan-arakkal@uiowa.edu>

Diff between JANE versions 0.2.1 dated 2024-12-19 and 1.0.0 dated 2025-03-22

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Package RcppZiggurat updated to version 0.1.7 with previous version 0.1.6 dated 2020-10-20

Title: 'Rcpp' Integration of Different "Ziggurat" Normal RNG Implementations
Description: The Ziggurat generator for normally distributed random numbers, originally proposed by Marsaglia and Tsang (2000, <doi:10.18637/jss.v005.i08>) has been improved upon a few times starting with Leong et al (2005, <doi:10.18637/jss.v012.i07>). This package provides an aggregation in order to compare different implementations in order to provide a 'faster but good enough' alternative for use with R and C++ code. See the 'zigg' package for a lighter implementation for much easier use in other packages.
Author: Dirk Eddelbuettel [aut, cre]
Maintainer: Dirk Eddelbuettel <edd@debian.org>

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Package simpletex updated to version 1.0.5 with previous version 1.0.4 dated 2024-07-07

Title: Mathematical Formulas and Character Recognition
Description: By calling the 'SimpleTex' <https://simpletex.cn/> open API implements text and mathematical formula recognition on the image, and the output formula can be used directly with 'Markdown' and 'LaTeX'.
Author: Xinyuan Chu [aut, cre]
Maintainer: Xinyuan Chu <chuxinyuan@outlook.com>

Diff between simpletex versions 1.0.4 dated 2024-07-07 and 1.0.5 dated 2025-03-22

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More information about simpletex at CRAN
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Package WDI updated to version 2.7.9 with previous version 2.7.8 dated 2022-09-25

Title: World Development Indicators and Other World Bank Data
Description: Search and download data from over 40 databases hosted by the World Bank, including the World Development Indicators ('WDI'), International Debt Statistics, Doing Business, Human Capital Index, and Sub-national Poverty indicators.
Author: Vincent Arel-Bundock [aut, cre] , Etienne Bacher [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>

Diff between WDI versions 2.7.8 dated 2022-09-25 and 2.7.9 dated 2025-03-22

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New package rpc with initial version 2.0.3
Package: rpc
Title: Ridge Partial Correlation
Version: 2.0.3
Date: 2025-03-20
Encoding: UTF-8
Maintainer: Somak Dutta <somakd@iastate.edu>
Description: Computes the ridge partial correlation coefficients in a high or ultra-high dimensional linear regression problem. An extended Bayesian information criterion is also implemented for variable selection. Users provide the matrix of covariates as a usual dense matrix or a sparse matrix stored in a compressed sparse column format. Detail of the method is given in the manual.
License: GPL (>= 2)
Imports: Rcpp (>= 1.0.11), Matrix
Suggests: MatrixExtra
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2025-03-20 15:42:25 UTC; somakd
Author: Somak Dutta [aut, cre, cph], An Nguyen [aut, ctb], Run Wang [ctb], Vivekananda Roy [ctb]
Repository: CRAN
Date/Publication: 2025-03-22 12:10:02 UTC

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New package SONO with initial version 1.1
Package: SONO
Title: Scores of Nominal Outlyingness (SONO)
Version: 1.1
Description: Computes scores of outlyingness for data sets consisting of nominal variables and includes various evaluation metrics for assessing performance of outlier identification algorithms producing scores of outlyingness. The scores of nominal outlyingness are computed based on the framework of Costa and Papatsouma (2025) <doi:10.48550/arXiv.2408.07463>.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: data.table (>= 1.14.0), DescTools (>= 0.99.0), ggplot2 (>= 3.3.5), Rdpack (>= 2.0), rje (>= 0.9)
NeedsCompilation: no
Packaged: 2025-03-20 12:50:26 UTC; ec1917
Author: Efthymios Costa [aut, cre]
Maintainer: Efthymios Costa <efthymios.costa17@imperial.ac.uk>
Repository: CRAN
Date/Publication: 2025-03-22 11:50:07 UTC

More information about SONO at CRAN
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New package simpr.interaction with initial version 0.1.0
Package: simpr.interaction
Title: Calculating Parameters for Simulation-Based Regression Interaction Power Analysis
Version: 0.1.0
Description: Provides functionality for analytically calculating parameters (via the 'InteractionPoweR' package) useful for simulation of moderated multiple regression, based on the correlations among the predictors and outcome and the reliability of predictors.
Imports: InteractionPoweR
License: GPL-2
Encoding: UTF-8
URL: https://github.com/statisfactions/simpr.interaction/
BugReports: https://github.com/statisfactions/simpr.interaction/issues/
NeedsCompilation: no
Packaged: 2025-03-20 08:59:14 UTC; EthanBrown
Author: Ethan C. Brown [aut, cre]
Maintainer: Ethan C. Brown <ethancbrown@gmail.com>
Repository: CRAN
Date/Publication: 2025-03-22 11:30:02 UTC

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New package SHIP with initial version 2.0.3
Package: SHIP
Title: Shrinkage Covariance Incorporating Prior Knowledge
Version: 2.0.3
Description: Implements estimation methods for shrinkage covariance matrices using user-specified covariance targets. The covariance target is a structured matrix towards which the unbiased sample covariance is shrunk, optionally incorporating prior knowledge. Shrinkage intensity is computed analytically. The method is described and applied to microarray gene expression data in Jelizarow et al. (2010) <doi:10.1093/bioinformatics/btq323>.
License: GPL (>= 2)
Encoding: UTF-8
Imports: stats
URL: https://github.com/vguillemot/SHIP
BugReports: https://github.com/vguillemot/SHIP/issues
NeedsCompilation: no
Packaged: 2025-03-20 12:53:13 UTC; vguillem
Author: Vincent Guillemot [aut, cre], Monika Jelizarow [aut]
Maintainer: Vincent Guillemot <vincent.guillemot@pasteur.fr>
Repository: CRAN
Date/Publication: 2025-03-22 11:50:11 UTC

More information about SHIP at CRAN
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Package RCurl updated to version 1.98-1.17 with previous version 1.98-1.16 dated 2024-07-11

Title: General Network (HTTP/FTP/...) Client Interface for R
Description: A wrapper for 'libcurl' <https://curl.se/libcurl/> Provides functions to allow one to compose general HTTP requests and provides convenient functions to fetch URIs, get & post forms, etc. and process the results returned by the Web server. This provides a great deal of control over the HTTP/FTP/... connection and the form of the request while providing a higher-level interface than is available just using R socket connections. Additionally, the underlying implementation is robust and extensive, supporting FTP/FTPS/TFTP (uploads and downloads), SSL/HTTPS, telnet, dict, ldap, and also supports cookies, redirects, authentication, etc.
Author: CRAN Team [ctb, cre] , Duncan Temple Lang [aut]
Maintainer: CRAN Team <CRAN@r-project.org>

Diff between RCurl versions 1.98-1.16 dated 2024-07-11 and 1.98-1.17 dated 2025-03-22

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New package EstimateBreed with initial version 1.0.0
Package: EstimateBreed
Title: Estimation of Environmental Variables and Genetic Parameters
Version: 1.0.0
Date: 2025-03-16
Maintainer: Willyan Junior Adorian Bandeira <bandeira.wjab@gmail.com>
Description: Performs analyzes and estimates of environmental covariates and genetic parameters related to selection strategies and development of superior genotypes. It has two main functionalities, the first being about prediction models of covariates and environmental processes, while the second deals with the estimation of genetic parameters and selection strategies. Designed for researchers and professionals in genetics and environmental sciences, the package combines statistical methods for modeling and data analysis. This includes the plastochron estimate proposed by Porta et al. (2024) <doi:10.1590/1807-1929/agriambi.v28n10e278299>, Stress indices for genotype selection referenced by Ghazvini et al. (2024) <doi:10.1007/s10343-024-00981-1>, the Environmental Stress Index described by Tazzo et al. (2024) <https://revistas.ufg.br/vet/article/view/77035>, industrial quality indices of wheat genotypes (Szareski et al., 2019), <doi:10.4238/gmr18223>, Ear Indexes estimation [...truncated...]
License: GPL (>= 3)
URL: https://github.com/willyanjnr/EstimateBreed
Depends: R (>= 4.1.0)
Imports: dplyr, ggplot2, hrbrthemes, broom, purrr, ggrepel, grid, httr, jsonlite, lubridate, nasapower, tidyr, viridis, cowplot, sommer, lme4, minque, utils, car, lmtest
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), roxygen2, DT
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: true
LazyLoad: true
Language: en-US
NeedsCompilation: no
Packaged: 2025-03-20 12:40:34 UTC; willy
Author: Willyan Junior Adorian Bandeira [aut, cre] , Ivan Ricardo Carvalho [aut, ctb] , Murilo Vieira Loro [aut, ctb] , Leonardo Cesar Pradebon [aut, ctb] , Jose Antonio Gonzalez da Silva [aut, ctb]
Repository: CRAN
Date/Publication: 2025-03-22 11:50:14 UTC

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Package causalweight updated to version 1.1.2 with previous version 1.1.1 dated 2024-07-23

Title: Estimation Methods for Causal Inference Based on Inverse Probability Weighting
Description: Various estimators of causal effects based on inverse probability weighting, doubly robust estimation, and double machine learning. Specifically, the package includes methods for estimating average treatment effects, direct and indirect effects in causal mediation analysis, and dynamic treatment effects. The models refer to studies of Froelich (2007) <doi:10.1016/j.jeconom.2006.06.004>, Huber (2012) <doi:10.3102/1076998611411917>, Huber (2014) <doi:10.1080/07474938.2013.806197>, Huber (2014) <doi:10.1002/jae.2341>, Froelich and Huber (2017) <doi:10.1111/rssb.12232>, Hsu, Huber, Lee, and Lettry (2020) <doi:10.1002/jae.2765>, and others.
Author: Hugo Bodory [aut, cre] , Martin Huber [aut] , Jannis Kueck [aut]
Maintainer: Hugo Bodory <hugo.bodory@unisg.ch>

Diff between causalweight versions 1.1.1 dated 2024-07-23 and 1.1.2 dated 2025-03-22

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New package BayesPIM with initial version 1.0.0
Package: BayesPIM
Title: Bayesian Prevalence-Incidence Mixture Model
Version: 1.0.0
Description: Models time-to-event data from interval-censored screening studies. It accounts for latent prevalence at baseline and incorporates misclassification due to imperfect test sensitivity. For usage details, see the package vignette ("BayesPIM_intro"). Further details can be found in T. Klausch, B. I. Lissenberg-Witte, and V. M. Coupe (2024), "A Bayesian prevalence-incidence mixture model for screening outcomes with misclassification", <doi:10.48550/arXiv.2412.16065>.
License: MIT + file LICENSE
URL: https://github.com/thomasklausch2/bayespim
BugReports: https://github.com/thomasklausch2/BayesPIM/issues
Encoding: UTF-8
LinkingTo: Rcpp
Imports: Rcpp, mvtnorm, MASS, ggamma, doParallel, foreach, parallel, actuar
Depends: R (>= 3.5.0), coda
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2025-03-20 09:17:37 UTC; thoma
Author: Thomas Klausch [aut, cre]
Maintainer: Thomas Klausch <t.klausch@amsterdamumc.nl>
Repository: CRAN
Date/Publication: 2025-03-22 11:40:02 UTC

More information about BayesPIM at CRAN
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Package RPhosFate updated to version 2.0.1 with previous version 1.0.4 dated 2023-10-07

Title: Soil and Chemical Substance Emission and Transport Model
Description: An enhanced version of the semi-empirical, spatially distributed emission and transport model PhosFate implemented in 'R' and 'C++'. It is based on the D-infinity, but also supports the D8 flow method. The currently available substances are suspended solids (SS) and particulate phosphorus (PP). A major feature is the allocation of substance loads entering surface waters to their sources of origin, which is a basic requirement for the identification of critical source areas and in consequence a cost-effective implementation of mitigation measures. References: Hepp et al. (2022) <doi:10.1016/j.jenvman.2022.114514>; Hepp and Zessner (2019) <doi:10.3390/w11102161>; Kovacs (2013) <http://hdl.handle.net/20.500.12708/9468>.
Author: Gerold Hepp [aut, cre]
Maintainer: Gerold Hepp <gisler@hepp.cc>

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Package spatstat updated to version 3.3-2 with previous version 3.3-1 dated 2025-01-23

Title: Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests
Description: Comprehensive open-source toolbox for analysing Spatial Point Patterns. Focused mainly on two-dimensional point patterns, including multitype/marked points, in any spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, point patterns on a linear network, and patterns of other geometrical objects. Supports spatial covariate data such as pixel images. Contains over 3000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks. Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlatio [...truncated...]
Author: Adrian Baddeley [aut, cre] , Rolf Turner [aut] , Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>

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Package coconots updated to version 2.0.0 with previous version 1.1.3 dated 2023-10-01

Title: Convolution-Closed Models for Count Time Series
Description: Useful tools for fitting, validating, and forecasting of practical convolution-closed time series models for low counts are provided. Marginal distributions of the data can be modelled via Poisson and Generalized Poisson innovations. Regression effects can be incorporated through time varying innovation rates. The models are described in Jung and Tremayne (2011) <doi:10.1111/j.1467-9892.2010.00697.x> and the model assessment tools are presented in Czado et al. (2009) <doi:10.1111/j.1541-0420.2009.01191.x> and, Tsay (1992) <doi:10.2307/2347612>.
Author: Manuel Huth [aut, cre], Robert C. Jung [aut], Andy Tremayne [aut]
Maintainer: Manuel Huth <manuel.huth@yahoo.com>

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More information about coconots at CRAN
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