Title: Assemble 'SSN' Objects
Description: Import, create and assemble data needed to fit spatial-statistical stream-network models using the 'SSN2' package for 'R'. Streams, observations, and prediction locations are represented as simple features and specific tools provided to define topological relationships between features; calculate the hydrologic distances (with flow-direction preserved) and the spatial additive function used to weight converging stream segments; and export the topological, spatial, and attribute information to an `SSN` (spatial stream network) object, which can be efficiently stored, accessed and analysed in 'R'. A detailed description of methods used to calculate and format the spatial data can be found in Peterson, E.E. and Ver Hoef, J.M., (2014) <doi:10.18637/jss.v056.i02>.
Author: Erin Peterson [aut, cre] ,
Michael Dumelle [aut] ,
Alan Pearse [aut] ,
Dan Teleki [ctb],
Jay M. Ver Hoef [ctb]
Maintainer: Erin Peterson <erin@peterson-consulting.com>
Diff between SSNbler versions 1.0.1 dated 2024-09-25 and 1.1.0 dated 2025-03-25
DESCRIPTION | 9 - MD5 | 67 ++++--- NAMESPACE | 5 NEWS.md | 22 +- R/SSNbler-package.R | 3 R/accum_edges.R | 20 -- R/afv_edges.R | 36 +--- R/afv_sites.R | 17 + R/get_pdist_nodes.R |only R/get_pdist_rid.R |only R/lines_to_lsn.R | 263 +++++++++++++++++------------ R/lines_to_lsn_temp.R | 2 R/pdist_node_coords.R |only R/pdist_rid_confl.R |only R/sites_to_lsn.R | 2 R/split_matrix.R |only R/ssn_assemble.R | 28 +-- R/ssn_check.R | 6 R/updist_edges.R | 7 R/updist_sites.R | 75 +++++--- README.md | 4 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 inst/doc/introduction.R | 322 ++++++++++++++++++------------------ inst/doc/introduction.Rmd | 12 - inst/doc/introduction.html | 18 +- man/accum_edges.Rd | 2 man/afv_edges.Rd | 2 man/afv_sites.Rd | 2 man/lines_to_lsn.Rd | 10 - man/lines_to_lsn_temp.Rd | 2 man/sites_to_lsn.Rd | 2 man/ssn_assemble.Rd | 398 ++++++++++++++++++++++----------------------- man/updist_edges.Rd | 2 man/updist_sites.Rd | 9 - vignettes/introduction.Rmd | 12 - 37 files changed, 730 insertions(+), 633 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-03-29 1.2.3
2022-06-10 1.0.1
2022-03-28 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-12-13 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-06-17 1.3.5
2024-01-31 1.3.4
2023-09-18 1.3.2
2023-08-30 1.3.1
2023-06-07 1.2.0
2023-05-15 1.1.1
2023-02-27 1.0.0
2023-01-10 0.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-24 0.7.4
2023-05-19 0.7.3
2023-03-08 0.7.2
2023-01-27 0.7.1
2022-10-25 0.7.0
2022-06-11 0.6.0
2022-03-22 0.5.0
2022-02-09 0.4.0
2022-01-31 0.3.0
2019-03-13 0.2.0
2018-08-02 0.1.1
2018-07-31 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-30 1.4.0
2023-08-07 1.3.0
2023-07-01 1.2.0
2022-08-20 1.1.1
2022-07-20 1.1.0
2022-06-13 1.0.1
Title: Recursive Non-Additive Emulator for Multi-Fidelity Data
Description: Performs RNA emulation and active learning proposed by Heo and Sung (2024) <doi:10.1080/00401706.2024.2376173> for multi-fidelity computer experiments. The RNA emulator is particularly useful when the simulations with different fidelity level are nonlinearly correlated. The hyperparameters in the model are estimated by maximum likelihood estimation.
Author: Junoh Heo [aut, cre],
Chih-Li Sung [aut]
Maintainer: Junoh Heo <heojunoh@msu.edu>
Diff between RNAmf versions 1.0.0 dated 2024-07-09 and 1.0.1 dated 2025-03-25
DESCRIPTION | 10 - MD5 | 22 +-- NAMESPACE | 2 R/ALC.R | 311 +++++++++++++++++++++++++++++------------------------- R/ALD.R | 309 +++++++++++++++++++++++++++++------------------------ R/ALM.R | 36 +++--- R/ALMC.R | 147 +++++++++++++------------ R/GP.R | 173 ++++++++++-------------------- R/matGP.R | 251 ++++++++++++++++++++----------------------- R/predict.RNAmf.R | 138 ++++++++++++----------- build/partial.rdb |binary man/ALD_RNAmf.Rd | 6 - 12 files changed, 707 insertions(+), 698 deletions(-)
Title: Fast and Memory Efficient Fitting of Linear Models with
High-Dimensional Fixed Effects
Description: Fast and user-friendly estimation of generalized linear models with
multiple fixed effects and cluster the standard errors. The method to obtain
the estimated fixed-effects coefficients is based on Stammann (2018)
<doi:10.48550/arXiv.1707.01815> and Gaure (2013)
<doi:10.1016/j.csda.2013.03.024>.
Author: Mauricio Vargas Sepulveda [aut, cre]
Maintainer: Mauricio Vargas Sepulveda <m.sepulveda@mail.utoronto.ca>
Diff between capybara versions 0.9.0 dated 2025-03-24 and 0.9.1 dated 2025-03-25
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 7 +++++++ README.md | 41 +++++++---------------------------------- src/02_center_variables.cpp | 10 +++++----- src/03_lm_fit.cpp | 15 ++++++--------- src/04_glm_fit.cpp | 38 ++++++++++++++++---------------------- 7 files changed, 50 insertions(+), 79 deletions(-)
Title: Rendering Font into 'data.frame'
Description: Extract glyph information from font data, and translate the
outline curves to flattened paths or tessellated polygons. The converted
data is returned as a 'data.frame' in easy-to-plot format.
Author: Hiroaki Yutani [aut, cre] ,
The authors of the dependency Rust crates [ctb]
Maintainer: Hiroaki Yutani <yutani.ini@gmail.com>
Diff between string2path versions 0.2.1 dated 2025-03-20 and 0.2.2 dated 2025-03-25
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ src/Makevars.in | 2 +- src/Makevars.win.in | 2 +- 5 files changed, 13 insertions(+), 9 deletions(-)
Title: Species Richness and Extrapolation
Description: Functions for calculating species richness for rarefaction and
extrapolation, primarily non-parametric species richness such as
jackknife, Chao1, and ACE. Also available are functions for plotting
species richness and extrapolation curves, and computing standard diversity
and entropy indices.
Author: Eric Archer [aut, cre]
Maintainer: Eric Archer <eric.archer@noaa.gov>
Diff between sprex versions 1.4.1 dated 2016-04-16 and 1.4.2 dated 2025-03-25
sprex-1.4.1/sprex/R/plot.discovery.curve.R |only sprex-1.4.1/sprex/man/plot.discovery.curve.Rd |only sprex-1.4.2/sprex/DESCRIPTION | 22 ++++--- sprex-1.4.2/sprex/MD5 | 52 ++++++++--------- sprex-1.4.2/sprex/NAMESPACE | 23 ------- sprex-1.4.2/sprex/R/Chao1.R | 38 +++++++++++- sprex-1.4.2/sprex/R/Clench.R | 20 +++--- sprex-1.4.2/sprex/R/bootstrap.assemblage.R | 5 - sprex-1.4.2/sprex/R/discovery.curve.R | 73 ++++++++++++++---------- sprex-1.4.2/sprex/R/diversity.R |only sprex-1.4.2/sprex/R/expected.num.species.R | 2 sprex-1.4.2/sprex/R/f0.R | 23 +++---- sprex-1.4.2/sprex/R/num.samples.required.R | 10 +-- sprex-1.4.2/sprex/R/rarefaction.overlap.R | 13 ++-- sprex-1.4.2/sprex/R/sprex-package.R | 3 sprex-1.4.2/sprex/README.md | 26 ++++++-- sprex-1.4.2/sprex/man/bootstrap.assemblage.Rd | 7 -- sprex-1.4.2/sprex/man/discovery.curve.Rd | 36 +++++------ sprex-1.4.2/sprex/man/diversity.Rd |only sprex-1.4.2/sprex/man/expand.freqs.Rd | 1 sprex-1.4.2/sprex/man/expected.num.species.Rd | 7 -- sprex-1.4.2/sprex/man/f.stats.Rd | 1 sprex-1.4.2/sprex/man/f0.Rd | 32 +++++----- sprex-1.4.2/sprex/man/num.samples.required.Rd | 11 +-- sprex-1.4.2/sprex/man/osa.old.growth.Rd | 1 sprex-1.4.2/sprex/man/rarefaction.overlap.Rd | 7 -- sprex-1.4.2/sprex/man/sample.to.species.freq.Rd | 7 -- sprex-1.4.2/sprex/man/species.to.sample.freq.Rd | 7 -- sprex-1.4.2/sprex/man/sprex-package.Rd | 7 -- 29 files changed, 240 insertions(+), 194 deletions(-)
Title: The 'Seven Bridges Platform' API Client
Description: R client and utilities for 'Seven Bridges Platform' API, from 'Cancer Genomics Cloud'
to other 'Seven Bridges' supported platforms. API documentation is hosted publicly
at <https://docs.sevenbridges.com/docs/the-api>.
Author: Marko Trifunovic [aut, cre],
Marija Gacic [aut],
Vladimir Obucina [aut],
Velsera [cph, fnd]
Maintainer: Marko Trifunovic <marko.trifunovic@velsera.com>
Diff between sevenbridges2 versions 0.3.0 dated 2025-02-24 and 0.4.0 dated 2025-03-25
DESCRIPTION | 8 MD5 | 204 ++++++++++++----------- NAMESPACE | 5 NEWS.md | 51 +++++ R/class-AsyncJob.R | 8 R/class-VolumeFile.R | 8 R/class-VolumePrefix.R | 17 + R/class-app.R | 53 ++---- R/class-apps.R | 38 ++-- R/class-auth.R | 56 ++++-- R/class-billing.R | 9 - R/class-billing_groups.R | 2 R/class-collection.R | 6 R/class-division.R |only R/class-divisions.R |only R/class-export.R | 18 +- R/class-exports-utils.R | 14 - R/class-exports.R | 21 +- R/class-file.R | 35 ++-- R/class-files.R | 4 R/class-import.R | 22 +- R/class-imports-utils.R | 3 R/class-imports.R | 26 +-- R/class-invoice.R | 4 R/class-invoices.R | 2 R/class-member.R | 2 R/class-permission.R | 4 R/class-project.R | 67 +++---- R/class-projects.R | 29 +-- R/class-ratelimit.R | 2 R/class-resource.R | 10 - R/class-task.R | 34 +-- R/class-tasks.R | 59 +++--- R/class-team.R |only R/class-teams.R |only R/class-upload.R | 12 - R/class-user.R | 11 - R/class-volume.R | 251 +++++++++++++++++++++++------ R/class-volumecontent-collection.R | 6 R/utils-validations.R | 6 build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/Authentication_and_Billing.R | 2 inst/doc/Authentication_and_Billing.Rmd | 8 inst/doc/Authentication_and_Billing.html | 16 - inst/doc/Enterprise_actions.R |only inst/doc/Enterprise_actions.Rmd |only inst/doc/Enterprise_actions.html |only inst/doc/Files_upload_and_Volumes.R | 53 +++++- inst/doc/Files_upload_and_Volumes.Rmd | 86 ++++++++- inst/doc/Files_upload_and_Volumes.html | 82 ++++++++- inst/doc/Projects_and_Tasks_execution.R | 2 inst/doc/Projects_and_Tasks_execution.Rmd | 2 inst/doc/Projects_and_Tasks_execution.html | 6 inst/doc/quickstart.R | 4 inst/doc/quickstart.Rmd | 12 - inst/doc/quickstart.html | 20 +- man/App.Rd | 53 ++---- man/Apps.Rd | 38 ++-- man/AsyncJob.Rd | 10 - man/Auth.Rd | 46 +++-- man/Billing.Rd | 9 - man/Billing_groups.Rd | 2 man/Collection.Rd | 6 man/Division.Rd |only man/Divisions.Rd |only man/Export.Rd | 16 - man/Exports.Rd | 19 +- man/File.Rd | 29 +-- man/Files.Rd | 4 man/Import.Rd | 24 +- man/Imports.Rd | 22 +- man/Invoice.Rd | 4 man/Invoices.Rd | 4 man/Member.Rd | 2 man/Part.Rd | 4 man/Permission.Rd | 2 man/Project.Rd | 63 +++---- man/Projects.Rd | 25 +- man/Rate.Rd | 2 man/Resource.Rd | 4 man/Task.Rd | 28 +-- man/Tasks.Rd | 51 ++--- man/Team.Rd |only man/Teams.Rd |only man/Upload.Rd | 8 man/User.Rd | 2 man/Volume.Rd | 228 +++++++++++++++++++++++--- man/VolumeContentCollection.Rd | 6 man/VolumeFile.Rd | 8 man/VolumePrefix.Rd | 19 +- man/prepare_items_for_bulk_export.Rd | 14 - man/prepare_items_for_bulk_import.Rd | 3 tests/testthat/_snaps/class-division.md |only tests/testthat/_snaps/class-team.md |only tests/testthat/setup.R | 76 ++++++++ tests/testthat/test-class-division.R |only tests/testthat/test-class-divisions.R |only tests/testthat/test-class-files.R | 2 tests/testthat/test-class-imports.R | 4 tests/testthat/test-class-project.R | 2 tests/testthat/test-class-resource.R | 2 tests/testthat/test-class-task.R | 2 tests/testthat/test-class-team.R |only tests/testthat/test-class-teams.R |only tests/testthat/test-class-volume.R | 246 +++++++++++++++++++--------- tests/testthat/test-utils-validations.R | 2 vignettes/Authentication_and_Billing.Rmd | 8 vignettes/Enterprise_actions.Rmd |only vignettes/Files_upload_and_Volumes.Rmd | 86 ++++++++- vignettes/Projects_and_Tasks_execution.Rmd | 2 vignettes/quickstart.Rmd | 12 - 112 files changed, 1727 insertions(+), 873 deletions(-)
Title: Estimate Permutation p-Values for Random Forest Importance
Metrics
Description: Estimate significance of importance metrics
for a Random Forest model by permuting the response
variable. Produces null distribution of importance
metrics for each predictor variable and p-value of
observed. Provides summary and visualization functions for 'randomForest'
results.
Author: Eric Archer [aut, cre]
Maintainer: Eric Archer <eric.archer@noaa.gov>
Diff between rfPermute versions 2.5.2 dated 2023-08-23 and 2.5.4 dated 2025-03-25
rfPermute-2.5.2/rfPermute/R/rfPermute_package.R |only rfPermute-2.5.2/rfPermute/man/rfPermute_package.Rd |only rfPermute-2.5.4/rfPermute/DESCRIPTION | 12 +++--- rfPermute-2.5.4/rfPermute/MD5 | 20 +++++----- rfPermute-2.5.4/rfPermute/R/plotInbag.R | 20 +++++----- rfPermute-2.5.4/rfPermute/R/plotProximity.R | 2 - rfPermute-2.5.4/rfPermute/R/rfPermute-package.R |only rfPermute-2.5.4/rfPermute/R/rfPermute.R | 40 +++++++++++++-------- rfPermute-2.5.4/rfPermute/R/summary.R | 2 - rfPermute-2.5.4/rfPermute/README.md | 9 +++- rfPermute-2.5.4/rfPermute/man/plotProximity.Rd | 2 - rfPermute-2.5.4/rfPermute/man/rfPermute-package.Rd |only rfPermute-2.5.4/rfPermute/man/rfPermute.Rd | 5 ++ 13 files changed, 66 insertions(+), 46 deletions(-)
Title: Preprocessing and Feature Engineering Steps for Modeling
Description: A recipe prepares your data for modeling. We provide an
extensible framework for pipeable sequences of feature engineering
steps provides preprocessing tools to be applied to data. Statistical
parameters for the steps can be estimated from an initial data set and
then applied to other data sets. The resulting processed output can
then be used as inputs for statistical or machine learning models.
Author: Max Kuhn [aut, cre],
Hadley Wickham [aut],
Emil Hvitfeldt [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
Diff between recipes versions 1.2.0 dated 2025-03-17 and 1.2.1 dated 2025-03-25
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NEWS.md | 6 ++++++ R/selections.R | 12 +++++++++--- R/sparsevctrs.R | 7 ++++++- inst/doc/Dummies.html | 5 +++-- inst/doc/Roles.html | 5 +++-- inst/doc/Selecting_Variables.html | 5 +++-- inst/doc/Skipping.html | 5 +++-- inst/doc/recipes.html | 5 +++-- man/recipe.Rd | 2 +- man/recipes_eval_select.Rd | 5 +++++ tests/testthat/test-sparsevctrs.R | 12 +++++++++++- 13 files changed, 68 insertions(+), 31 deletions(-)
Title: R Commander Plug-in for Data Visualization with 'ggplot2'
Description: A GUI front-end for 'ggplot2' supports Kaplan-Meier plot, histogram,
Q-Q plot, box plot, errorbar plot, scatter plot, line chart, pie chart,
bar chart, contour plot, and distribution plot.
Author: Kengo Nagashima [aut, cre]
Maintainer: Kengo Nagashima <nshi1201@gmail.com>
Diff between RcmdrPlugin.KMggplot2 versions 0.2-6 dated 2019-09-17 and 0.2-7 dated 2025-03-25
RcmdrPlugin.KMggplot2-0.2-6/RcmdrPlugin.KMggplot2/NEWS |only RcmdrPlugin.KMggplot2-0.2-6/RcmdrPlugin.KMggplot2/R/aaa-package.r |only RcmdrPlugin.KMggplot2-0.2-6/RcmdrPlugin.KMggplot2/build/partial.rdb |only RcmdrPlugin.KMggplot2-0.2-6/RcmdrPlugin.KMggplot2/man/package-RcmdrPlugin.KMggplot2.Rd |only RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/DESCRIPTION | 38 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/MD5 | 166 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/NAMESPACE | 2 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/NEWS.md | 295 - RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/R/RcmdrPlugin.KMggplot2-package.r |only RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/R/geom-stepribbon.r | 48 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/R/guiparts-toolbox.r | 368 - RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/R/plot-aaa.r | 2216 +++++----- RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/R/plot-factorise.r | 532 +- RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/R/plot-gdist.r | 4 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/R/plot-gkm.r | 10 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/R/plot-gline.r | 12 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/R/zzz.r | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/README.md | 48 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/build/vignette.rds |binary RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/inst/doc/extrafont.html | 192 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/inst/doc/geom-stepribbon.R | 2 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/inst/doc/geom-stepribbon.html | 286 - RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/inst/doc/plot-km-requirement.R | 2 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/inst/doc/plot-km-requirement.html | 194 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/RcmdrPlugin.KMggplot2-package.Rd |only RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/data-dataContour.Rd | 6 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/data-dataKm.Rd | 6 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/data-dataLine.Rd | 6 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/geom_stepribbon.Rd | 94 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/guiparts-checkboxes-front.Rd | 27 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/guiparts-checkboxes.Rd | 27 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/guiparts-gparts_base-back.Rd | 27 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/guiparts-gparts_base.Rd | 27 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/guiparts-radioboxes-front.Rd | 27 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/guiparts-radioboxes.Rd | 27 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/guiparts-textfield-front.Rd | 27 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/guiparts-textfield.Rd | 27 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/guiparts-textfields-front.Rd | 27 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/guiparts-textfields.Rd | 27 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/guiparts-toolbox-front.Rd | 27 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/guiparts-toolbox.Rd | 27 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/guiparts-variableboxes-front.Rd | 27 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/guiparts-variableboxes.Rd | 27 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-factorize.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-gbox.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-gcont.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-gdiscbar.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-gdist.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-ghist.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-gkm.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-gline.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-gpie.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-gqq.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-gscat.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-gscatmat.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-checkError.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-checkTheme.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-checkVariable.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-commandDoIt.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-getCoord.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-getFacet.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-getGeom.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-getGgplot.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-getHelp.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-getMain.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-getMessage.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-getOpts.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-getParms.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-getPlot.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-getScale.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-getTheme.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-getWindowTitle.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-getXlab.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-getYlab.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-getZlab.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-plotWindow.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-registRmlist.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-removeRmlist.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-savePlot.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-setBack.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-setDataframe.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base-setFront.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/plot-plot_base.Rd | 74 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/man/util-ggsaveKmg2.Rd | 16 RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/po/R-RcmdrPlugin.KMggplot2-ja.po | 1548 +++--- RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/po/R-RcmdrPlugin.KMggplot2-sl.po | 1554 +++---- RcmdrPlugin.KMggplot2-0.2-7/RcmdrPlugin.KMggplot2/po/R-RcmdrPlugin.KMggplot2.pot | 1534 +++--- 87 files changed, 6526 insertions(+), 6065 deletions(-)
More information about RcmdrPlugin.KMggplot2 at CRAN
Permanent link
Title: Analysis and Manipulation of Data from Minecraft Bedrock Edition
Description: Implements an interface to Minecraft (Bedrock Edition) worlds. Supports the analysis and management of these worlds and game saves.
Author: Reed Cartwright [aut, cre] ,
Rich FitzJohn [ctb],
Christian Stigen Larsen [ctb],
The LevelDB Authors [cph]
Maintainer: Reed Cartwright <racartwright@gmail.com>
Diff between rbedrock versions 0.3.2 dated 2023-12-01 and 0.3.3 dated 2025-03-25
rbedrock-0.3.2/rbedrock/src/leveldb-mcpe |only rbedrock-0.3.3/rbedrock/DESCRIPTION | 8 rbedrock-0.3.3/rbedrock/MD5 | 361 +++++++++---------- rbedrock-0.3.3/rbedrock/NAMESPACE | 2 rbedrock-0.3.3/rbedrock/NEWS.md | 84 ++-- rbedrock-0.3.3/rbedrock/R/biomes.R | 123 +++--- rbedrock-0.3.3/rbedrock/R/blocks.R | 273 ++++++++++---- rbedrock-0.3.3/rbedrock/R/data3d.R | 114 ++++-- rbedrock-0.3.3/rbedrock/R/nbt.R | 2 rbedrock-0.3.3/rbedrock/README.md | 2 rbedrock-0.3.3/rbedrock/cleanup | 2 rbedrock-0.3.3/rbedrock/configure | 2 rbedrock-0.3.3/rbedrock/man/SubchunkBlocks.Rd | 10 rbedrock-0.3.3/rbedrock/man/chunk_blocks.Rd |only rbedrock-0.3.3/rbedrock/man/get_chunk_blocks_data.Rd | 16 rbedrock-0.3.3/rbedrock/src/Makevars | 12 rbedrock-0.3.3/rbedrock/src/Makevars.win | 19 - rbedrock-0.3.3/rbedrock/src/subchunk.c | 80 ++-- rbedrock-0.3.3/rbedrock/src/support.c | 2 rbedrock-0.3.3/rbedrock/src/vendor |only rbedrock-0.3.3/rbedrock/tests/testthat/test_blocks.R | 139 +++++-- rbedrock-0.3.3/rbedrock/tests/testthat/test_data3d.R | 14 22 files changed, 773 insertions(+), 492 deletions(-)
Title: Convenience Functions for Routine Data Exploration
Description: A series of shortcuts for routine tasks originally developed by
Rafael A. Irizarry to facilitate data exploration.
Author: Rafael A. Irizarry [aut, cre],
Michael I. Love [aut]
Maintainer: Rafael A. Irizarry <rafael_irizarry@dfci.harvard.edu>
Diff between rafalib versions 1.0.0 dated 2015-08-08 and 1.0.3 dated 2025-03-25
rafalib-1.0.0/rafalib/README.md |only rafalib-1.0.3/rafalib/DESCRIPTION | 24 ++++++--- rafalib-1.0.3/rafalib/MD5 | 73 +++++++++++++++--------------- rafalib-1.0.3/rafalib/NAMESPACE | 45 ++++++++++++++---- rafalib-1.0.3/rafalib/R/as.fumeric.R | 4 + rafalib-1.0.3/rafalib/R/bartab.R | 4 + rafalib-1.0.3/rafalib/R/imagemat.R | 6 ++ rafalib-1.0.3/rafalib/R/imagesort.R | 3 + rafalib-1.0.3/rafalib/R/install_bioc.R | 39 ++++++++-------- rafalib-1.0.3/rafalib/R/largeobj.R | 10 +++- rafalib-1.0.3/rafalib/R/maplot.R | 5 ++ rafalib-1.0.3/rafalib/R/mypar.R | 9 ++- rafalib-1.0.3/rafalib/R/myplclust.R | 3 + rafalib-1.0.3/rafalib/R/nullplot.R | 9 ++- rafalib-1.0.3/rafalib/R/peek.R | 7 ++ rafalib-1.0.3/rafalib/R/popvar.R | 13 +++-- rafalib-1.0.3/rafalib/R/sboxplot.R | 4 + rafalib-1.0.3/rafalib/R/shist.R | 3 + rafalib-1.0.3/rafalib/R/splitit.R | 2 rafalib-1.0.3/rafalib/R/splot.R | 3 + rafalib-1.0.3/rafalib/R/stripplot.R |only rafalib-1.0.3/rafalib/man/as.fumeric.Rd | 5 +- rafalib-1.0.3/rafalib/man/bartab.Rd | 12 ++++ rafalib-1.0.3/rafalib/man/imagemat.Rd | 15 ++++-- rafalib-1.0.3/rafalib/man/imagesort.Rd | 5 +- rafalib-1.0.3/rafalib/man/install_bioc.Rd | 17 +++--- rafalib-1.0.3/rafalib/man/largeobj.Rd | 11 +++- rafalib-1.0.3/rafalib/man/maplot.Rd | 31 ++++++++---- rafalib-1.0.3/rafalib/man/mypar.Rd | 24 ++++++--- rafalib-1.0.3/rafalib/man/myplclust.Rd | 21 ++++++-- rafalib-1.0.3/rafalib/man/nullplot.Rd | 5 +- rafalib-1.0.3/rafalib/man/peek.Rd | 16 +++++- rafalib-1.0.3/rafalib/man/popsd.Rd | 11 ++-- rafalib-1.0.3/rafalib/man/popvar.Rd | 14 +++-- rafalib-1.0.3/rafalib/man/sboxplot.Rd | 5 +- rafalib-1.0.3/rafalib/man/shist.Rd | 29 +++++++++-- rafalib-1.0.3/rafalib/man/splitit.Rd | 3 - rafalib-1.0.3/rafalib/man/splot.Rd | 7 +- rafalib-1.0.3/rafalib/man/stripplot.Rd |only 39 files changed, 338 insertions(+), 159 deletions(-)
Title: Bayesian Network Meta-Analysis of Individual and Aggregate Data
Description: Network meta-analysis and network meta-regression models for
aggregate data, individual patient data, and mixtures of both individual
and aggregate data using multilevel network meta-regression as described by
Phillippo et al. (2020) <doi:10.1111/rssa.12579>. Models are estimated in a
Bayesian framework using 'Stan'.
Author: David M. Phillippo [aut, cre] ,
Samuel J. Perren [ctb]
Maintainer: David M. Phillippo <david.phillippo@bristol.ac.uk>
Diff between multinma versions 0.7.2 dated 2024-09-16 and 0.8.0 dated 2025-03-25
multinma-0.7.2/multinma/inst/REFERENCES.bib.sav.tmp |only multinma-0.7.2/multinma/man/print.nma_dic.Rd |only multinma-0.8.0/multinma/DESCRIPTION | 22 multinma-0.8.0/multinma/MD5 | 125 multinma-0.8.0/multinma/NAMESPACE | 9 multinma-0.8.0/multinma/NEWS.md | 31 multinma-0.8.0/multinma/R/data.R | 24 multinma-0.8.0/multinma/R/integration.R | 57 multinma-0.8.0/multinma/R/mspline.R | 29 multinma-0.8.0/multinma/R/nma.R | 219 multinma-0.8.0/multinma/R/nma_data-class.R | 32 multinma-0.8.0/multinma/R/nma_data.R | 40 multinma-0.8.0/multinma/R/nma_dic-class.R | 319 multinma-0.8.0/multinma/R/nma_dic.R | 43 multinma-0.8.0/multinma/R/stan_nma-class.R | 13 multinma-0.8.0/multinma/README.md | 4 multinma-0.8.0/multinma/build/partial.rdb |binary multinma-0.8.0/multinma/build/vignette.rds |binary multinma-0.8.0/multinma/data/social_anxiety.rda |only multinma-0.8.0/multinma/inst/REFERENCES.bib | 18 multinma-0.8.0/multinma/inst/doc/example_blocker.html | 325 multinma-0.8.0/multinma/inst/doc/example_plaque_psoriasis.html | 413 multinma-0.8.0/multinma/inst/doc/example_social_anxiety.html |only multinma-0.8.0/multinma/inst/doc/example_social_anxiety.html.asis |only multinma-0.8.0/multinma/inst/doc/vignette_overview.Rmd | 4 multinma-0.8.0/multinma/inst/doc/vignette_overview.html | 25 multinma-0.8.0/multinma/inst/stan/binomial_1par.stan | 53 multinma-0.8.0/multinma/inst/stan/binomial_2par.stan | 54 multinma-0.8.0/multinma/inst/stan/include/count_nonzero.stan | 14 multinma-0.8.0/multinma/inst/stan/include/data_common.stan | 15 multinma-0.8.0/multinma/inst/stan/include/model_common.stan | 27 multinma-0.8.0/multinma/inst/stan/include/parameters_common.stan | 7 multinma-0.8.0/multinma/inst/stan/include/prior_select.stan | 23 multinma-0.8.0/multinma/inst/stan/include/transformed_data_common.stan | 31 multinma-0.8.0/multinma/inst/stan/include/transformed_parameters_common.stan | 228 multinma-0.8.0/multinma/inst/stan/normal.stan | 45 multinma-0.8.0/multinma/inst/stan/ordered_multinomial.stan | 27 multinma-0.8.0/multinma/inst/stan/poisson.stan | 39 multinma-0.8.0/multinma/inst/stan/survival_mspline.stan | 8 multinma-0.8.0/multinma/inst/stan/survival_param.stan | 8 multinma-0.8.0/multinma/man/graph_conversion.Rd | 108 multinma-0.8.0/multinma/man/logitNormal.Rd | 25 multinma-0.8.0/multinma/man/multinma-package.Rd | 5 multinma-0.8.0/multinma/man/nma.Rd | 20 multinma-0.8.0/multinma/man/nma_dic-methods.Rd |only multinma-0.8.0/multinma/man/plot.nma_data.Rd | 3 multinma-0.8.0/multinma/man/plot.nma_dic.Rd | 30 multinma-0.8.0/multinma/man/plot.nodesplit_summary.Rd | 174 multinma-0.8.0/multinma/man/plot_prior_posterior.Rd | 142 multinma-0.8.0/multinma/man/social_anxiety.Rd |only multinma-0.8.0/multinma/man/softmax.Rd |only multinma-0.8.0/multinma/src/stanExports_binomial_1par.h | 3620 ++++-- multinma-0.8.0/multinma/src/stanExports_binomial_2par.h | 3717 ++++-- multinma-0.8.0/multinma/src/stanExports_normal.h | 3444 +++-- multinma-0.8.0/multinma/src/stanExports_ordered_multinomial.h | 4015 ++++-- multinma-0.8.0/multinma/src/stanExports_poisson.h | 3353 +++-- multinma-0.8.0/multinma/src/stanExports_survival_mspline.h | 4813 +++++--- multinma-0.8.0/multinma/src/stanExports_survival_param.h | 6003 ++++++---- multinma-0.8.0/multinma/tests/testthat/test-class_effects.R |only multinma-0.8.0/multinma/tests/testthat/test-data_combine.R | 68 multinma-0.8.0/multinma/tests/testthat/test-example_atrial_fibrillation.R | 149 multinma-0.8.0/multinma/tests/testthat/test-example_blocker.R | 26 multinma-0.8.0/multinma/tests/testthat/test-example_dietary_fat.R | 116 multinma-0.8.0/multinma/tests/testthat/test-example_social_anxiety.R |only multinma-0.8.0/multinma/tests/testthat/test-logitnorm.R |only multinma-0.8.0/multinma/tests/testthat/test-nma.R | 41 multinma-0.8.0/multinma/tests/testthat/test-predict.R | 42 multinma-0.8.0/multinma/vignettes/class_effects_flow_chart-1.svg |only multinma-0.8.0/multinma/vignettes/example_social_anxiety.html.asis |only multinma-0.8.0/multinma/vignettes/vignette_overview.Rmd | 4 70 files changed, 21305 insertions(+), 10944 deletions(-)
Title: Multinomial Cochran-Armitage Trend Test
Description: Implements a generalization of the Cochran-Armitage trend test to
multinomial data. In addition to an overall test, multiple testing adjusted
p-values for trend in individual outcomes and power calculation is
available.
Author: Aniko Szabo [aut, cre]
Maintainer: Aniko Szabo <aszabo@mcw.edu>
Diff between multiCA versions 1.1 dated 2017-08-07 and 1.2.0 dated 2025-03-25
DESCRIPTION | 24 ++++---- MD5 | 23 ++++--- NAMESPACE | 3 + R/aaa-generics.R | 2 R/multiCA.R | 129 +++++++++++++++++++++++++++++++++++++++++--- build/partial.rdb |binary man/cnonct.Rd | 1 man/internal.Rd | 3 - man/multiCA-package.Rd | 6 -- man/multiCA.test.Rd | 25 ++++---- man/power.CA.test.Rd |only man/power.multiCA.test.Rd | 51 ++++++++++++++--- tests/testthat/test_power.R | 27 +++++++++ 13 files changed, 237 insertions(+), 57 deletions(-)
Title: Climate AEMET Tools
Description: Tools to download the climatic data of the Spanish
Meteorological Agency (AEMET) directly from R using their API and
create scientific graphs (climate charts, trend analysis of climate
time series, temperature and precipitation anomalies maps, warming
stripes graphics, climatograms, etc.).
Author: Manuel Pizarro [aut, cph] ,
Diego Hernangomez [aut, cre] ,
Gema Fernandez-Aviles [aut]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between climaemet versions 1.4.0 dated 2024-08-28 and 1.4.1 dated 2025-03-25
DESCRIPTION | 17 - MD5 | 74 ++--- NEWS.md | 10 R/aemet_api_key.R | 374 +++++++++++++------------- R/aemet_api_query.R | 74 +++-- R/aemet_forecast_fires.R | 9 R/stripes.R | 19 - R/windrose.R | 12 README.md | 286 +++++++++---------- build/vignette.rds |binary data/aemet_munic.rda |binary data/climaemet_9434_climatogram.rda |binary data/climaemet_9434_temp.rda |binary data/climaemet_9434_wind.rda |binary inst/CITATION | 2 inst/doc/climaemet.Rmd | 35 +- inst/doc/climaemet.html | 37 +- inst/doc/extending-climaemet.Rmd | 89 +++--- inst/doc/extending-climaemet.html | 82 +++-- inst/schemaorg.json | 6 man/aemet_api_key.Rd | 4 man/aemet_forecast_fires.Rd | 7 man/climaemet-package.Rd | 2 man/climatestripes_station.Rd | 19 - man/figures/README-climatestripes-1.png |binary man/figures/README-climatogram-1.png |binary man/figures/README-spatial-1.png |binary man/figures/README-windrose-1.png |binary man/figures/logo.png |binary man/windrose_period.Rd | 12 tests/testthat/_snaps/aemet_forecast_fires.md | 16 - tests/testthat/_snaps/aemet_monthly.md | 32 -- tests/testthat/test-aemet_api_query.R | 76 ++++- tests/testthat/test-aemet_monthly.R | 5 vignettes/climaemet.Rmd | 35 +- vignettes/example-gif.gif |binary vignettes/extending-climaemet.Rmd | 89 +++--- vignettes/spatial-1.png |binary 38 files changed, 763 insertions(+), 660 deletions(-)
Title: Bayesian Survival Models for High-Dimensional Data
Description: An implementation of Bayesian survival models with graph-structured selection priors for sparse identification of omics features predictive of survival (Madjar et al., 2021 <doi:10.1186/s12859-021-04483-z>) and its extension to use a fixed graph via a Markov Random Field (MRF) prior for capturing known structure of omics features, e.g. disease-specific pathways from the Kyoto Encyclopedia of Genes and Genomes database (Hermansen et al., 2025 <doi:10.48550/arXiv.2503.13078>).
Author: Zhi Zhao [aut, cre],
Waldir Leoncio [aut],
Katrin Madjar [aut],
Tobias Oestmo Hermansen [aut],
Manuela Zucknick [ctb],
Joerg Rahnenfuehrer [ctb]
Maintainer: Zhi Zhao <zhi.zhao@medisin.uio.no>
Diff between BayesSurvive versions 0.0.2 dated 2024-06-04 and 0.1.0 dated 2025-03-25
DESCRIPTION | 22 +-- MD5 | 94 ++++++++------ NAMESPACE | 1 NEWS.md | 9 + R/BayesSurvive-package.R | 9 + R/BayesSurvive.R | 27 ++-- R/RcppExports.R | 32 +++- R/UpdateRPlee11.R | 17 +- R/VS.R | 249 +++++++++++++++++++++++++++++++------- R/coef.BayesSurvive.R | 16 +- R/func_MCMC.R | 77 ++++++++--- R/func_MCMC_graph.R | 7 - R/plot.BayesSurvive.R | 11 - R/plotBrier.R | 2 R/predict.BayesSurvive.R | 77 +++++++---- R/updatePara.R | 14 +- README.md | 77 +++++++---- build/partial.rdb |binary build/vignette.rds |binary configure | 18 +- inst/CITATION |only inst/doc/BayesCox.Rmd | 72 ++++++---- inst/doc/BayesCox.html | 155 ++++++++++++++--------- man/BayesSurvive-package.Rd | 3 man/BayesSurvive.Rd | 13 + man/UpdateGamma.Rd | 6 man/UpdateRPlee11.Rd | 9 - man/VS.Rd | 13 + man/coef.BayesSurvive.Rd | 2 man/figures/README_plot_beta.png |binary man/figures/README_plot_brier.png |binary man/func_MCMC.Rd | 13 + man/func_MCMC_graph.Rd | 4 man/plot.BayesSurvive.Rd | 2 man/plotBrier.Rd | 2 man/predict.BayesSurvive.Rd | 12 + src/Makevars.in | 5 src/Makevars.win | 1 src/RcppExports.cpp | 103 ++++++++++++--- src/UpdateGamma_cpp.cpp |only src/UpdateRPlee11_cpp.cpp |only src/func_MCMC_graph_cpp.cpp |only src/init.c | 38 +++-- src/misc.cpp |only src/misc.h |only src/updateRP_genomic_cpp.cpp | 120 ++++++++++++------ src/updateRP_genomic_cpp.h | 53 +------- tests |only vignettes/BayesCox.Rmd | 72 ++++++---- 49 files changed, 962 insertions(+), 495 deletions(-)
Title: Interface to Unidata netCDF (Version 4 or Earlier) Format Data
Files
Description: Provides a high-level R interface to data files written using Unidata's netCDF library (version 4 or earlier), which are binary data files that are portable across platforms and include metadata information in addition to the data sets. Using this package, netCDF files (either version 4 or "classic" version 3) can be opened and data sets read in easily. It is also easy to create new netCDF dimensions, variables, and files, in either version 3 or 4 format, and manipulate existing netCDF files. This package replaces the former ncdf package, which only worked with netcdf version 3 files. For various reasons the names of the functions have had to be changed from the names in the ncdf package. The old ncdf package is still available at the URL given below, if you need to have backward compatibility. It should be possible to have both the ncdf and ncdf4 packages installed simultaneously without a problem. However, the ncdf package does not provide an interface for netcdf version 4 fil [...truncated...]
Author: David Pierce [aut, cre]
Maintainer: David Pierce <dpierce@ucsd.edu>
Diff between ncdf4 versions 1.23 dated 2024-08-17 and 1.24 dated 2025-03-25
ChangeLog | 3 +++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/ncdf4.R | 2 +- configure.ac | 14 +++++++------- 5 files changed, 19 insertions(+), 16 deletions(-)
Title: Meta Clustering with Similarity Network Fusion
Description: Framework to facilitate patient subtyping with similarity network fusion and meta clustering. The similarity network fusion (SNF) algorithm was introduced by Wang et al. (2014) in <doi:10.1038/nmeth.2810>. SNF is a data integration approach that can transform high-dimensional and diverse data types into a single similarity network suitable for clustering with minimal loss of information from each initial data source. The meta clustering approach was introduced by Caruana et al. (2006) in <doi:10.1109/ICDM.2006.103>. Meta clustering involves generating a wide range of cluster solutions by adjusting clustering hyperparameters, then clustering the solutions themselves into a manageable number of qualitatively similar solutions, and finally characterizing representative solutions to find ones that are best for the user's specific context. This package provides a framework to easily transform multi-modal data into a wide range of similarity network fusion-derived cluster solutio [...truncated...]
Author: Prashanth S Velayudhan [aut, cre],
Xiaoqiao Xu [aut],
Prajkta Kallurkar [aut],
Ana Patricia Balbon [aut],
Maria T Secara [aut],
Adam Taback [aut],
Denise Sabac [aut],
Nicholas Chan [aut],
Shihao Ma [aut],
Bo Wang [aut],
Daniel Felsky [aut],
Stephanie [...truncated...]
Maintainer: Prashanth S Velayudhan <psvelayu@gmail.com>
Diff between metasnf versions 2.0.0 dated 2025-02-04 and 2.0.6 dated 2025-03-25
metasnf-2.0.0/metasnf/man/merge_dls.Rd |only metasnf-2.0.6/metasnf/DESCRIPTION | 6 metasnf-2.0.6/metasnf/MD5 | 69 +- metasnf-2.0.6/metasnf/NAMESPACE | 8 metasnf-2.0.6/metasnf/NEWS.md | 74 ++ metasnf-2.0.6/metasnf/R/ari_matrix.R | 14 metasnf-2.0.6/metasnf/R/as_list.R |only metasnf-2.0.6/metasnf/R/as_matrix.R |only metasnf-2.0.6/metasnf/R/data_list.R | 35 - metasnf-2.0.6/metasnf/R/deprecated.R | 6 metasnf-2.0.6/metasnf/R/dplyr.R |only metasnf-2.0.6/metasnf/R/ext_solutions_df.R | 16 metasnf-2.0.6/metasnf/R/extraction.R | 14 metasnf-2.0.6/metasnf/R/manhattan_plot.R | 6 metasnf-2.0.6/metasnf/R/merge.R | 48 + metasnf-2.0.6/metasnf/R/nclust_estimation.R | 68 +- metasnf-2.0.6/metasnf/R/print.R | 11 metasnf-2.0.6/metasnf/R/rbind.R | 16 metasnf-2.0.6/metasnf/R/solutions_df.R | 5 metasnf-2.0.6/metasnf/README.md | 4 metasnf-2.0.6/metasnf/inst/doc/a_complete_example.html | 305 +++------- metasnf-2.0.6/metasnf/inst/doc/a_simple_example.html | 2 metasnf-2.0.6/metasnf/inst/doc/distance_metrics.html | 2 metasnf-2.0.6/metasnf/inst/doc/snf_config.R | 1 metasnf-2.0.6/metasnf/inst/doc/snf_config.Rmd | 3 metasnf-2.0.6/metasnf/inst/doc/snf_config.html | 16 metasnf-2.0.6/metasnf/inst/doc/stability_measures.R | 2 metasnf-2.0.6/metasnf/inst/doc/stability_measures.Rmd | 5 metasnf-2.0.6/metasnf/inst/doc/stability_measures.html | 9 metasnf-2.0.6/metasnf/man/as.list.clust_fns_list.Rd |only metasnf-2.0.6/metasnf/man/as.list.data_list.Rd |only metasnf-2.0.6/metasnf/man/as.list.dist_fns_list.Rd |only metasnf-2.0.6/metasnf/man/as.matrix.weights_matrix.Rd |only metasnf-2.0.6/metasnf/man/dplyr_row_slice.ext_solutions_df.Rd |only metasnf-2.0.6/metasnf/man/dplyr_row_slice.solutions_df.Rd |only metasnf-2.0.6/metasnf/man/merge.data_list.Rd |only metasnf-2.0.6/metasnf/man/print.solutions_df.Rd | 2 metasnf-2.0.6/metasnf/man/rbind.ext_solutions_df.Rd | 6 metasnf-2.0.6/metasnf/man/rbind.solutions_df.Rd | 6 metasnf-2.0.6/metasnf/vignettes/snf_config.Rmd | 3 metasnf-2.0.6/metasnf/vignettes/stability_measures.Rmd | 5 41 files changed, 431 insertions(+), 336 deletions(-)
Title: Hot Spots
Description: The hotspots package is designed to look within a set of measured values of a variable and identify values that are disproportionately high based on both the deviance of any given value from a statistical distribution and its similarity to other values. Because this relative magnitude of each value is taken into account, a value that is a statistical outlier may not always be a hot spot if other values are similarly large.
Author: Anthony Darrouzet-Nardi [aut, cre]
Maintainer: Anthony Darrouzet-Nardi <anthony@darrouzet-nardi.net>
Diff between hotspots versions 1.0.3 dated 2018-05-30 and 1.0.5 dated 2025-03-25
DESCRIPTION | 16 ++++++++++------ MD5 | 6 +++--- man/Lchs.Rd | 6 +++--- man/plot.hotspots.Rd | 6 +++--- 4 files changed, 19 insertions(+), 15 deletions(-)
Title: Command-Line Interface Specification Language
Description: Define a command-line interface by just giving it
a description in the specific format.
Author: Edwin de Jonge [aut, cre]
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>
Diff between docopt versions 0.7.1 dated 2020-06-24 and 0.7.2 dated 2025-03-25
docopt-0.7.1/docopt/R/pkg.R |only docopt-0.7.2/docopt/DESCRIPTION | 14 +++++++++----- docopt-0.7.2/docopt/MD5 | 13 +++++++------ docopt-0.7.2/docopt/NEWS | 3 +++ docopt-0.7.2/docopt/R/Pattern.R | 14 +++++++------- docopt-0.7.2/docopt/R/docopt-package.R |only docopt-0.7.2/docopt/R/docopt.R | 22 ++++++++++++++++++++-- docopt-0.7.2/docopt/man/docopt-package.Rd | 14 +++++++++++++- docopt-0.7.2/docopt/tests/testthat/test-issue44.R |only 9 files changed, 59 insertions(+), 21 deletions(-)
Title: Seamless Access to World Bank World Development Indicators (WDI)
Description: Access and analyze the World Bank’s World Development Indicators
(WDI) using the corresponding API <https://datahelpdesk.worldbank.org/knowledgebase/articles/889392-about-the-indicators-api-documentation>.
WDI provides more than 24,000 country or region-level indicators for various
contexts. 'wbwdi' enables users to download, process and work with WDI
series across multiple countries, aggregates, and time periods.
Author: Christoph Scheuch [aut, cre, cph]
Maintainer: Christoph Scheuch <christoph@tidy-intelligence.com>
Diff between wbwdi versions 1.0.0 dated 2025-02-25 and 1.0.1 dated 2025-03-25
DESCRIPTION | 10 +- MD5 | 14 +-- NAMESPACE | 1 NEWS.md | 8 ++ R/wbwdi-package.R | 2 R/wdi_search.R | 8 +- README.md | 144 ++++++++++++++++++++++++++++++++++++-- tests/testthat/tests-wdi_search.R | 43 ++++++++--- 8 files changed, 199 insertions(+), 31 deletions(-)
Title: Functions to Analyze Single System Data
Description: Functions to visually and statistically analyze single system data.
Author: Charles Auerbach [aut, cre],
Wendy Zeitlin [aut]
Maintainer: Charles Auerbach <auerbach@yu.edu>
Diff between SSDforR versions 1.5.38 dated 2025-03-16 and 1.5.39 dated 2025-03-25
DESCRIPTION | 8 +++--- MD5 | 58 ++++++++++++++++++++++---------------------- R/ABbinomial.R | 1 R/ABdescrip.R | 30 +++++++++++++++++++---- R/ABregres.R | 2 + R/ABrf2.R | 23 ++++++++++------- R/Aregres.R | 3 +- R/CDCabove.R | 7 +++-- R/CDCbelow.R | 7 +++-- R/Effectsize.R | 73 +++++++++++++++++++++++++++++++++++--------------------- R/Gindex.R | 17 ++++++------- R/NAPabove.R | 1 R/NAPbelow.R | 1 R/PANDabove.R | 1 R/PANDbelow.R | 1 R/PEMabove.R | 6 +++- R/PEMbelow.R | 6 +++- R/PNDabove.R | 6 +++- R/PNDbelow.R | 6 +++- R/meanabove.R | 14 +++++++++- R/meanbelow.R | 15 +++++++++-- R/medabove.R | 19 +++++++++++++- R/medbelow.R | 19 +++++++++++++- R/metareg.R | 9 ++++-- R/metaregi.R | 3 +- R/regabove.R | 18 ++++++++++++- R/regbelow.R | 32 ++++++++++++++++++++---- R/robregabove.R | 16 ++++++++++-- R/robregbelow.R | 19 +++++++++++++- R/trendtest.R | 2 - 30 files changed, 302 insertions(+), 121 deletions(-)
Title: Interface to the National 'Phenology' Network 'API'
Description: Programmatic interface to the Web Service methods provided by
the National 'Phenology' Network (<https://usanpn.org/>), which
includes data on various life history events that occur at specific
times.
Author: Jeff Switzer [aut, cre],
Scott Chamberlain [aut],
Lee Marsh [aut],
Kevin Wong [aut],
Eric R Scott [aut] ,
David LeBauer [ctb]
Maintainer: Jeff Switzer <jeff@usanpn.org>
Diff between rnpn versions 1.3.0 dated 2025-03-05 and 1.4.0 dated 2025-03-25
rnpn-1.3.0/rnpn/man/npn_get_download_url.Rd |only rnpn-1.3.0/rnpn/tests/fixtures/npn_get_phenophases_for_taxon_6.yml |only rnpn-1.4.0/rnpn/DESCRIPTION | 10 rnpn-1.4.0/rnpn/MD5 | 75 - rnpn-1.4.0/rnpn/NAMESPACE | 1 rnpn-1.4.0/rnpn/NEWS.md | 16 rnpn-1.4.0/rnpn/R/npn_data_download.R | 354 +++-- rnpn-1.4.0/rnpn/R/npn_geoserver.R | 2 rnpn-1.4.0/rnpn/R/npn_stations.R | 20 rnpn-1.4.0/rnpn/R/release-reminders.R | 2 rnpn-1.4.0/rnpn/R/rnpn-package.R | 1 rnpn-1.4.0/rnpn/R/utils.R | 13 rnpn-1.4.0/rnpn/inst/CITATION | 2 rnpn-1.4.0/rnpn/inst/doc/III_individual_phenometrics.html | 2 rnpn-1.4.0/rnpn/inst/doc/II_status_intensity.html | 2 rnpn-1.4.0/rnpn/inst/doc/IV_site_phenometrics.html | 2 rnpn-1.4.0/rnpn/inst/doc/I_introduction.html | 2 rnpn-1.4.0/rnpn/inst/doc/VIII_data_cleaning.html | 2 rnpn-1.4.0/rnpn/inst/doc/VII_combine_raster_point.html | 2 rnpn-1.4.0/rnpn/inst/doc/V_magnitude_phenometrics.html | 2 rnpn-1.4.0/rnpn/inst/release-tasks.R | 2 rnpn-1.4.0/rnpn/man/figures |only rnpn-1.4.0/rnpn/man/npn_download_individual_phenometrics.Rd | 16 rnpn-1.4.0/rnpn/man/npn_download_site_phenometrics.Rd | 12 rnpn-1.4.0/rnpn/man/npn_get_data.Rd | 10 rnpn-1.4.0/rnpn/man/npn_get_data_by_year.Rd | 29 rnpn-1.4.0/rnpn/man/npn_stations_with_spp.Rd | 13 rnpn-1.4.0/rnpn/tests/fixtures/custom_period.yml |only rnpn-1.4.0/rnpn/tests/fixtures/npn_download_individual_phenometrics_basic_1.yml |only rnpn-1.4.0/rnpn/tests/fixtures/npn_download_magnitude_phenometrics_basic_1.yml |only rnpn-1.4.0/rnpn/tests/fixtures/npn_download_magnitude_phenometrics_basic_2.yml |only rnpn-1.4.0/rnpn/tests/fixtures/npn_download_site_phenometrics_basic_1.yml |only rnpn-1.4.0/rnpn/tests/fixtures/npn_download_site_phenometrics_basic_2.yml |only rnpn-1.4.0/rnpn/tests/fixtures/npn_download_status_data_basic_1.yml |only rnpn-1.4.0/rnpn/tests/fixtures/npn_get_phenophases_for_taxon_1.yml | 4 rnpn-1.4.0/rnpn/tests/fixtures/npn_get_phenophases_for_taxon_2.yml | 4 rnpn-1.4.0/rnpn/tests/fixtures/npn_get_phenophases_for_taxon_3.yml | 4 rnpn-1.4.0/rnpn/tests/fixtures/npn_get_phenophases_for_taxon_4.yml | 4 rnpn-1.4.0/rnpn/tests/fixtures/npn_get_phenophases_for_taxon_5.yml | 4 rnpn-1.4.0/rnpn/tests/testthat/test-npn-geoserver.R | 4 rnpn-1.4.0/rnpn/tests/testthat/test-npn-observations.R | 622 +++++----- rnpn-1.4.0/rnpn/tests/testthat/test-npn-phenophases.R | 25 42 files changed, 731 insertions(+), 532 deletions(-)
Title: API Wrapper for Google Classroom and Google Forms
Description: This is a Google Forms and Google Classroom API Wrapper for R for managing Google Classrooms from R. The documentation for these APIs is here <https://developers.google.com/forms/api/guides> .
Author: Candace Savonen [cre, aut]
Maintainer: Candace Savonen <csavonen@fredhutch.org>
Diff between rgoogleclassroom versions 0.9.1 dated 2023-08-09 and 1.0.0 dated 2025-03-25
rgoogleclassroom-0.9.1/rgoogleclassroom/inst/extdata/tmp/default_creds.rds |only rgoogleclassroom-1.0.0/rgoogleclassroom/DESCRIPTION | 14 +-- rgoogleclassroom-1.0.0/rgoogleclassroom/MD5 | 44 ++++++---- rgoogleclassroom-1.0.0/rgoogleclassroom/NAMESPACE | 20 ++++ rgoogleclassroom-1.0.0/rgoogleclassroom/NEWS.md | 6 - rgoogleclassroom-1.0.0/rgoogleclassroom/R/auth.R | 4 rgoogleclassroom-1.0.0/rgoogleclassroom/R/coursework.R | 8 + rgoogleclassroom-1.0.0/rgoogleclassroom/R/ottrpal-translate.R | 35 +++++++ rgoogleclassroom-1.0.0/rgoogleclassroom/R/quiz_formatting.R |only rgoogleclassroom-1.0.0/rgoogleclassroom/R/utils.R | 21 ++++ rgoogleclassroom-1.0.0/rgoogleclassroom/build/vignette.rds |binary rgoogleclassroom-1.0.0/rgoogleclassroom/inst/doc/getting-started.Rmd | 2 rgoogleclassroom-1.0.0/rgoogleclassroom/inst/doc/getting-started.html | 27 +++--- rgoogleclassroom-1.0.0/rgoogleclassroom/inst/extdata/quizzes |only rgoogleclassroom-1.0.0/rgoogleclassroom/man/authorize.Rd | 4 rgoogleclassroom-1.0.0/rgoogleclassroom/man/bad_quiz_path.Rd |only rgoogleclassroom-1.0.0/rgoogleclassroom/man/check_all_questions.Rd |only rgoogleclassroom-1.0.0/rgoogleclassroom/man/check_question.Rd |only rgoogleclassroom-1.0.0/rgoogleclassroom/man/check_quiz.Rd |only rgoogleclassroom-1.0.0/rgoogleclassroom/man/check_quiz_attributes.Rd |only rgoogleclassroom-1.0.0/rgoogleclassroom/man/check_quiz_dir.Rd |only rgoogleclassroom-1.0.0/rgoogleclassroom/man/check_quiz_question_attributes.Rd |only rgoogleclassroom-1.0.0/rgoogleclassroom/man/check_quizzes.Rd |only rgoogleclassroom-1.0.0/rgoogleclassroom/man/extract_meta.Rd |only rgoogleclassroom-1.0.0/rgoogleclassroom/man/good_quiz_path.Rd |only rgoogleclassroom-1.0.0/rgoogleclassroom/man/parse_q_tag.Rd |only rgoogleclassroom-1.0.0/rgoogleclassroom/man/parse_quiz.Rd |only rgoogleclassroom-1.0.0/rgoogleclassroom/man/parse_quiz_df.Rd |only rgoogleclassroom-1.0.0/rgoogleclassroom/man/pipe.Rd |only rgoogleclassroom-1.0.0/rgoogleclassroom/man/translate_questions_api.Rd | 2 rgoogleclassroom-1.0.0/rgoogleclassroom/vignettes/getting-started.Rmd | 2 31 files changed, 139 insertions(+), 50 deletions(-)
More information about rgoogleclassroom at CRAN
Permanent link
Title: Interface to 'Python'
Description: Interface to 'Python' modules, classes, and functions. When calling
into 'Python', R data types are automatically converted to their equivalent 'Python'
types. When values are returned from 'Python' to R they are converted back to R
types. Compatible with all versions of 'Python' >= 2.7.
Author: Tomasz Kalinowski [ctb, cre],
Kevin Ushey [aut],
JJ Allaire [aut],
RStudio [cph, fnd],
Yuan Tang [aut, cph] ,
Dirk Eddelbuettel [ctb, cph],
Bryan Lewis [ctb, cph],
Sigrid Keydana [ctb],
Ryan Hafen [ctb, cph],
Marcus Geelnard [ctb, cph]
Maintainer: Tomasz Kalinowski <tomasz@posit.co>
Diff between reticulate versions 1.41.0.1 dated 2025-03-09 and 1.42.0 dated 2025-03-25
DESCRIPTION | 6 MD5 | 78 ++- NAMESPACE | 2 NEWS.md | 32 + R/config.R | 2 R/install.R | 2 R/package.R | 9 R/py_require.R | 463 +++++++++++++++-------- R/python-item.R | 20 R/python.R | 31 + R/repl.R | 2 R/testthat-helpers.R | 10 R/thread.R | 14 R/utils.R | 9 R/virtualenv.R | 13 R/zzz.R | 11 build/vignette.rds |binary inst/doc/arrays.html | 5 inst/doc/calling_python.html | 5 inst/doc/package.Rmd | 2 inst/doc/package.html | 7 inst/doc/python_dependencies.html | 5 inst/doc/python_packages.html | 5 inst/doc/python_primer.html | 5 inst/doc/versions.html | 5 man/py_get_item.Rd | 3 man/py_register_load_hook.Rd |only man/py_require.Rd | 92 ++-- man/uv_run_tool.Rd | 19 src/libpython.cpp | 77 ++- src/python.cpp | 79 ++- src/tinythread.h | 3 tests/testthat/_snaps/py_require.md | 12 tests/testthat/helper-py-require.R | 39 + tests/testthat/resources/figure |only tests/testthat/resources/test-custom-root-dir.md |only tests/testthat/test-finalize.R | 1 tests/testthat/test-interrupts.R | 8 tests/testthat/test-py_require.R | 12 tests/testthat/test-python-base-r-generics.R | 25 + vignettes/package.Rmd | 2 41 files changed, 783 insertions(+), 332 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization, Stochastic dominance and Advanced Monte Carlo sampling. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole [aut, cre],
Roberto Spadim [ctb]
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 11.1 dated 2025-02-17 and 11.2 dated 2025-03-25
DESCRIPTION | 8 ++--- MD5 | 17 ++++++------ R/ARMA_optim.R | 4 ++ R/Central_tendencies.R | 66 ++++++++++++++++++++++++++++++++++++++--------- R/Copula.R | 8 ++--- R/TSD.R | 7 ++-- README.md | 4 +- man/NNS.ARMA.optim.Rd | 2 - man/NNS.rescale.Rd | 34 +++++++++++++++++++----- src/central_tendencies.h |only 10 files changed, 106 insertions(+), 44 deletions(-)
Title: Utility Functions for Forest Inventory Estimation and Analysis
Description: A set of tools for data wrangling, spatial data analysis,
statistical modeling (including direct, model-assisted, photo-based, and
small area tools), and USDA Forest Service data base tools. These tools are
aimed to help Foresters, Analysts, and Scientists extract and perform
analyses on USDA Forest Service data.
Author: Tracey Frescino [aut],
Chris Toney [aut],
Grayson White [aut, cre],
Joshua Yamamoto [aut]
Maintainer: Grayson White <graysonwhite13@gmail.com>
Diff between FIESTAutils versions 1.3.0 dated 2025-01-29 and 1.3.1 dated 2025-03-25
DESCRIPTION | 8 MD5 | 40 +-- R/DBinternal.R | 43 ++- R/DBtestSQLite.R | 14 - R/SAest.pbar.R | 546 +++++++++++++++++++++++++------------------------- R/checks.R | 2 R/cool_functions.R | 21 + R/datExportData.R | 1 R/datSum_options.R | 3 R/getRefobject.R | 3 R/pcheck.functions.R | 4 R/popTabchk.R | 4 R/raster_analysis.R | 18 + R/spatial_functions.R | 6 R/table_functions.R | 53 +++- R/table_options.R | 8 R/write2csv.R | 34 +-- R/write2sqlite.R | 9 data/ref_codes.rda |binary man/datSum_options.Rd | 4 man/table_options.Rd | 4 21 files changed, 454 insertions(+), 371 deletions(-)
Title: Extended Rasch Modeling
Description: Fits Rasch models (RM), linear logistic test models (LLTM), rating scale model (RSM), linear rating scale models (LRSM), partial credit models (PCM), and linear partial credit models (LPCM). Missing values are allowed in the data matrix. Additional features are the ML estimation of the person parameters, Andersen's LR-test, item-specific Wald test, Martin-Loef-Test, nonparametric Monte-Carlo Tests, itemfit and personfit statistics including infit and outfit measures, ICC and other plots, automated stepwise item elimination, simulation module for various binary data matrices.
Author: Patrick Mair [cre, aut],
Thomas Rusch [aut],
Reinhold Hatzinger [aut],
Marco J. Maier [aut],
Rudolf Debelak [ctb]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between eRm versions 1.0-6 dated 2024-03-15 and 1.0-9 dated 2025-03-25
DESCRIPTION | 8 - MD5 | 30 ++-- NAMESPACE | 1 R/MLoef.R | 251 +++++++++++++++------------------ R/person.parameter.eRm.R | 48 ++++-- R/plotICC.Rm.R | 347 +++++++++++++++++++++++------------------------ R/print.ppar.R | 132 ++++++++--------- R/summary.ppar.R | 90 ++++++------ R/thresholds.eRm.r | 139 +++++++++--------- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 22 ++ inst/doc/eRm.pdf |binary man/LRtest.Rd | 2 man/MLoef.Rd | 135 +++++++++--------- man/NPtest.Rd | 25 --- 16 files changed, 620 insertions(+), 610 deletions(-)
Title: Simulate Disease Outbreak Line List and Contacts Data
Description: Tools to simulate realistic raw case data for an epidemic in
the form of line lists and contacts using a branching process.
Simulated outbreaks are parameterised with epidemiological parameters
and can have age-structured populations, age-stratified
hospitalisation and death risk and time-varying case fatality risk.
Author: Joshua W. Lambert [aut, cre, cph]
,
Carmen Tamayo [aut] ,
Hugo Gruson [ctb, rev] ,
Pratik R. Gupte [ctb, rev] ,
Adam Kucharski [rev] ,
Chris Hartgerink [rev] ,
Sebastian Funk [ctb] ,
London School of Hygiene and Tropical Medicine, LSHTM [cph]
Maintainer: Joshua W. Lambert <joshua.lambert@lshtm.ac.uk>
Diff between simulist versions 0.4.0 dated 2025-01-10 and 0.5.0 dated 2025-03-25
simulist-0.4.0/simulist/man/dot-check_age_df.Rd |only simulist-0.4.0/simulist/man/dot-check_risk_df.Rd |only simulist-0.4.0/simulist/man/figures/simulist_archi.png |only simulist-0.4.0/simulist/tests/testthat/testdata/pre_date_first_contact.rds |only simulist-0.4.0/simulist/tests/testthat/testdata/pre_date_last_contact.rds |only simulist-0.5.0/simulist/DESCRIPTION | 25 simulist-0.5.0/simulist/MD5 | 150 simulist-0.5.0/simulist/NAMESPACE | 2 simulist-0.5.0/simulist/NEWS.md | 70 simulist-0.5.0/simulist/R/add_cols.R | 161 simulist-0.5.0/simulist/R/checkers.R | 148 simulist-0.5.0/simulist/R/create_config.R | 60 simulist-0.5.0/simulist/R/dev-utils.R | 4 simulist-0.5.0/simulist/R/messy_linelist.R |only simulist-0.5.0/simulist/R/sim_contacts.R | 2 simulist-0.5.0/simulist/R/sim_internal.R | 48 simulist-0.5.0/simulist/R/sim_linelist.R | 58 simulist-0.5.0/simulist/R/sim_network_bp.R | 25 simulist-0.5.0/simulist/R/sim_outbreak.R | 21 simulist-0.5.0/simulist/R/truncate_linelist.R |only simulist-0.5.0/simulist/R/utils.R | 182 simulist-0.5.0/simulist/README.md | 233 simulist-0.5.0/simulist/build/vignette.rds |binary simulist-0.5.0/simulist/inst/WORDLIST | 74 simulist-0.5.0/simulist/inst/doc/age-strat-risks.R | 10 simulist-0.5.0/simulist/inst/doc/age-strat-risks.Rmd | 8 simulist-0.5.0/simulist/inst/doc/age-strat-risks.html | 229 simulist-0.5.0/simulist/inst/doc/age-struct-pop.R | 21 simulist-0.5.0/simulist/inst/doc/age-struct-pop.Rmd | 67 simulist-0.5.0/simulist/inst/doc/age-struct-pop.html | 232 simulist-0.5.0/simulist/inst/doc/design-principles.Rmd | 19 simulist-0.5.0/simulist/inst/doc/design-principles.html | 89 simulist-0.5.0/simulist/inst/doc/reporting-delays-truncation.R |only simulist-0.5.0/simulist/inst/doc/reporting-delays-truncation.Rmd |only simulist-0.5.0/simulist/inst/doc/reporting-delays-truncation.html |only simulist-0.5.0/simulist/inst/doc/simulist.R | 12 simulist-0.5.0/simulist/inst/doc/simulist.Rmd | 12 simulist-0.5.0/simulist/inst/doc/simulist.html | 462 - simulist-0.5.0/simulist/inst/doc/time-varying-cfr.R | 61 simulist-0.5.0/simulist/inst/doc/time-varying-cfr.Rmd | 128 simulist-0.5.0/simulist/inst/doc/time-varying-cfr.html | 645 +- simulist-0.5.0/simulist/inst/doc/vis-linelist.R | 60 simulist-0.5.0/simulist/inst/doc/vis-linelist.Rmd | 92 simulist-0.5.0/simulist/inst/doc/vis-linelist.html | 585 +- simulist-0.5.0/simulist/inst/doc/wrangling-linelist.R | 2 simulist-0.5.0/simulist/inst/doc/wrangling-linelist.Rmd | 2 simulist-0.5.0/simulist/inst/doc/wrangling-linelist.html | 228 simulist-0.5.0/simulist/man/coerce-df.Rd |only simulist-0.5.0/simulist/man/create_config.Rd | 49 simulist-0.5.0/simulist/man/dot-add_cols.Rd | 56 simulist-0.5.0/simulist/man/dot-add_missing.Rd |only simulist-0.5.0/simulist/man/dot-check_df.Rd |only simulist-0.5.0/simulist/man/dot-check_linelist.Rd |only simulist-0.5.0/simulist/man/dot-check_sim_input.Rd | 20 simulist-0.5.0/simulist/man/dot-cross_check_sim_input.Rd | 10 simulist-0.5.0/simulist/man/dot-sample_outcome_time.Rd |only simulist-0.5.0/simulist/man/dot-sim_internal.Rd | 33 simulist-0.5.0/simulist/man/figures/simulist_archi.svg |only simulist-0.5.0/simulist/man/messy_linelist.Rd |only simulist-0.5.0/simulist/man/sim_linelist.Rd | 50 simulist-0.5.0/simulist/man/sim_outbreak.Rd | 50 simulist-0.5.0/simulist/man/simulist-package.Rd | 4 simulist-0.5.0/simulist/man/truncate_linelist.Rd |only simulist-0.5.0/simulist/tests/testthat/_snaps/sim_contacts.md | 464 - simulist-0.5.0/simulist/tests/testthat/_snaps/sim_linelist.md | 1374 +++-- simulist-0.5.0/simulist/tests/testthat/_snaps/sim_outbreak.md | 2650 +++++----- simulist-0.5.0/simulist/tests/testthat/helper-state.R | 11 simulist-0.5.0/simulist/tests/testthat/test-add_cols.R | 158 simulist-0.5.0/simulist/tests/testthat/test-checkers.R | 208 simulist-0.5.0/simulist/tests/testthat/test-create_config.R | 89 simulist-0.5.0/simulist/tests/testthat/test-messy_linelist.R |only simulist-0.5.0/simulist/tests/testthat/test-sim_contacts.R | 35 simulist-0.5.0/simulist/tests/testthat/test-sim_linelist.R | 84 simulist-0.5.0/simulist/tests/testthat/test-sim_network_bp.R | 54 simulist-0.5.0/simulist/tests/testthat/test-sim_outbreak.R | 45 simulist-0.5.0/simulist/tests/testthat/test-truncate_linelist.R |only simulist-0.5.0/simulist/tests/testthat/test-utils.R | 11 simulist-0.5.0/simulist/tests/testthat/testdata/README.md | 45 simulist-0.5.0/simulist/tests/testthat/testdata/pre_date_contact.rds |only simulist-0.5.0/simulist/vignettes/age-strat-risks.Rmd | 8 simulist-0.5.0/simulist/vignettes/age-struct-pop.Rmd | 67 simulist-0.5.0/simulist/vignettes/design-principles.Rmd | 19 simulist-0.5.0/simulist/vignettes/reporting-delays-truncation.Rmd |only simulist-0.5.0/simulist/vignettes/simulist.Rmd | 12 simulist-0.5.0/simulist/vignettes/time-varying-cfr.Rmd | 128 simulist-0.5.0/simulist/vignettes/vis-linelist.Rmd | 92 simulist-0.5.0/simulist/vignettes/wrangling-linelist.Rmd | 2 87 files changed, 5676 insertions(+), 4379 deletions(-)
Title: qPCR Data Analysis
Description: Various methods are employed for statistical analysis and graphical presentation of real-time PCR (quantitative PCR or qPCR) data. 'rtpcr' handles amplification efficiency calculation, statistical analysis and graphical representation of real-time PCR data based on up to two reference genes. By accounting for amplification efficiency values, 'rtpcr' was developed using a general calculation method described by Ganger et al. (2017) <doi:10.1186/s12859-017-1949-5> and Taylor et al. (2019) <doi:10.1016/j.tibtech.2018.12.002>, covering both the Livak and Pfaffl methods. Based on the experimental conditions, the functions of the 'rtpcr' package use t-test (for experiments with a two-level factor), analysis of variance (ANOVA), analysis of covariance (ANCOVA) or analysis of repeated measure data to calculate the fold change (FC, Delta Delta Ct method) or relative expression (RE, Delta Ct method). The functions further provide standard errors and confidence intervals for means, a [...truncated...]
Author: Ghader Mirzaghaderi [aut, cre, cph]
Maintainer: Ghader Mirzaghaderi <gh.mirzaghaderi@uok.ac.ir>
Diff between rtpcr versions 2.0.1 dated 2025-02-13 and 2.0.2 dated 2025-03-25
rtpcr-2.0.1/rtpcr/COPYING |only rtpcr-2.0.1/rtpcr/man/figures |only rtpcr-2.0.2/rtpcr/DESCRIPTION | 6 rtpcr-2.0.2/rtpcr/MD5 | 20 - rtpcr-2.0.2/rtpcr/R/qpcrANOVAFC.r | 16 - rtpcr-2.0.2/rtpcr/R/qpcrTTESTplot.r | 10 rtpcr-2.0.2/rtpcr/build/vignette.rds |binary rtpcr-2.0.2/rtpcr/inst/doc/vignette.R | 54 ++--- rtpcr-2.0.2/rtpcr/inst/doc/vignette.Rmd | 18 - rtpcr-2.0.2/rtpcr/inst/doc/vignette.html | 324 ++++++++++++++++--------------- rtpcr-2.0.2/rtpcr/man/qpcrANOVAFC.Rd | 16 - rtpcr-2.0.2/rtpcr/vignettes/vignette.Rmd | 18 - 12 files changed, 251 insertions(+), 231 deletions(-)
Title: Simulation and Estimation of Log-GARCH Models
Description: Simulation and estimation of univariate and multivariate log-GARCH models. The main functions of the package are: lgarchSim(), mlgarchSim(), lgarch() and mlgarch(). The first two functions simulate from a univariate and a multivariate log-GARCH model, respectively, whereas the latter two estimate a univariate and multivariate log-GARCH model, respectively.
Author: Genaro Sucarrat [aut, cre]
Maintainer: Genaro Sucarrat <genaro.sucarrat@bi.no>
Diff between lgarch versions 0.6-2 dated 2015-09-15 and 0.7 dated 2025-03-25
lgarch-0.6-2/lgarch/R/coef.lgarch.R |only lgarch-0.6-2/lgarch/R/coef.mlgarch.R |only lgarch-0.6-2/lgarch/R/fitted.lgarch.R |only lgarch-0.6-2/lgarch/R/fitted.mlgarch.R |only lgarch-0.6-2/lgarch/R/gdiff.R |only lgarch-0.6-2/lgarch/R/glag.R |only lgarch-0.6-2/lgarch/R/lgarch.R |only lgarch-0.6-2/lgarch/R/lgarchObjective.R |only lgarch-0.6-2/lgarch/R/lgarchRecursion1.R |only lgarch-0.6-2/lgarch/R/lgarchSim.R |only lgarch-0.6-2/lgarch/R/logLik.lgarch.R |only lgarch-0.6-2/lgarch/R/logLik.mlgarch.R |only lgarch-0.6-2/lgarch/R/mlgarch.R |only lgarch-0.6-2/lgarch/R/mlgarchObjective.R |only lgarch-0.6-2/lgarch/R/mlgarchRecursion1.R |only lgarch-0.6-2/lgarch/R/mlgarchSim.R |only lgarch-0.6-2/lgarch/R/print.lgarch.R |only lgarch-0.6-2/lgarch/R/print.mlgarch.R |only lgarch-0.6-2/lgarch/R/residuals.lgarch.R |only lgarch-0.6-2/lgarch/R/residuals.mlgarch.R |only lgarch-0.6-2/lgarch/R/rmnorm.R |only lgarch-0.6-2/lgarch/R/rss.R |only lgarch-0.6-2/lgarch/R/summary.lgarch.R |only lgarch-0.6-2/lgarch/R/summary.mlgarch.R |only lgarch-0.6-2/lgarch/R/vcov.lgarch.R |only lgarch-0.6-2/lgarch/R/vcov.mlgarch.R |only lgarch-0.6-2/lgarch/src/lgarch.cpp |only lgarch-0.7/lgarch/DESCRIPTION | 16 ++--- lgarch-0.7/lgarch/MD5 | 65 +++++++-------------- lgarch-0.7/lgarch/NAMESPACE | 22 ++++++- lgarch-0.7/lgarch/NEWS | 89 ++++++++++++++++-------------- lgarch-0.7/lgarch/R/lgarch-internal.R | 36 +++++------- lgarch-0.7/lgarch/R/lgarch-source.R |only lgarch-0.7/lgarch/R/mlgarch-source.R |only lgarch-0.7/lgarch/build |only lgarch-0.7/lgarch/man/coef.lgarch.Rd | 9 +-- lgarch-0.7/lgarch/man/coef.mlgarch.Rd | 16 +++-- lgarch-0.7/lgarch/man/gdiff.Rd | 6 +- lgarch-0.7/lgarch/man/glag.Rd | 6 +- lgarch-0.7/lgarch/man/lgarch-package.Rd | 33 +++++------ lgarch-0.7/lgarch/man/lgarch.Rd | 21 ++++--- lgarch-0.7/lgarch/man/lgarchObjective.Rd | 14 ++-- lgarch-0.7/lgarch/man/lgarchSim.Rd | 9 +-- lgarch-0.7/lgarch/man/mlgarch.Rd | 21 +++---- lgarch-0.7/lgarch/man/mlgarchObjective.Rd | 10 +-- lgarch-0.7/lgarch/man/mlgarchSim.Rd | 16 ++--- lgarch-0.7/lgarch/man/rmnorm.Rd | 8 +- lgarch-0.7/lgarch/src/lgarch.c |only lgarch-0.7/lgarch/src/recursions.c |only lgarch-0.7/lgarch/src/recursions.h |only 50 files changed, 204 insertions(+), 193 deletions(-)
Title: Cyclic Redundancy Check with CPU-Specific Acceleration
Description: Hardware-based support for 'CRC32C' cyclic redundancy checksum function
is made available for 'x86_64' systems with 'SSE2' support as well as for 'arm64',
and detected at build-time via 'cmake' with a software-based fallback. This
functionality is exported at the 'C'-language level for use by other packages.
'CRC32C' is described in 'RFC 3270' at <https://datatracker.ietf.org/doc/html/rfc3720>
and is based on 'Castagnoli et al' <doi:10.1109/26.231911>.
Author: Dirk Eddelbuettel [aut, cre] ,
The CRC32C Authors [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between crc32c versions 0.0.2 dated 2023-05-11 and 0.0.3 dated 2025-03-25
ChangeLog | 29 +++++++++++++++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- README.md | 2 +- build/partial.rdb |binary inst/NEWS.Rd | 9 +++++++++ src/Makevars.in | 3 +++ src/crc32c/CMakeLists.txt | 2 +- 8 files changed, 54 insertions(+), 13 deletions(-)
Title: Estimate Structured Additive Regression Models with 'BayesX'
Description: An R interface to estimate structured additive regression (STAR) models with 'BayesX'.
Author: Nikolaus Umlauf [aut, cre] ,
Thomas Kneib [aut],
Stefan Lang [aut],
Achim Zeileis [aut]
Maintainer: Nikolaus Umlauf <Nikolaus.Umlauf@uibk.ac.at>
Diff between R2BayesX versions 1.1-5 dated 2023-10-20 and 1.1-6 dated 2025-03-25
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- man/fitted.bayesx.Rd | 6 +----- man/nbAndGraConversion.Rd | 6 +++--- man/read.bayesx.output.Rd | 4 ++-- 5 files changed, 15 insertions(+), 19 deletions(-)
Title: Finite Mixtures of Mallows Models with Spearman Distance for
Full and Partial Rankings
Description: Fit and analysis of finite Mixtures of Mallows models with Spearman Distance for full and partial rankings with arbitrary missing positions. Inference is conducted within the maximum likelihood framework via Expectation-Maximization algorithms. Estimation uncertainty is tackled via diverse versions of bootstrapped and asymptotic confidence intervals. The most relevant reference of the methods is Crispino, Mollica, Astuti and Tardella (2023) <doi:10.1007/s11222-023-10266-8>.
Author: Cristina Mollica [aut, cre, cph]
,
Marta Crispino [aut, cph] ,
Lucia Modugno [ctb] ,
Luca Tardella [ctb]
Maintainer: Cristina Mollica <cristina.mollica@uniroma1.it>
Diff between MSmix versions 1.0.2 dated 2024-06-15 and 2.0.0 dated 2025-03-25
MSmix-1.0.2/MSmix/inst |only MSmix-2.0.0/MSmix/DESCRIPTION | 16 MSmix-2.0.0/MSmix/MD5 | 57 MSmix-2.0.0/MSmix/NAMESPACE | 6 MSmix-2.0.0/MSmix/NEWS | 35 MSmix-2.0.0/MSmix/R/MSmix_functions_package.R | 1681 ++++++++++++++++++-------- MSmix-2.0.0/MSmix/README.md |only MSmix-2.0.0/MSmix/man/MSmix-package.Rd | 7 MSmix-2.0.0/MSmix/man/bicMSmix.Rd | 8 MSmix-2.0.0/MSmix/man/bootMSmix.Rd | 2 MSmix-2.0.0/MSmix/man/bootstrapMSmix.Rd | 51 MSmix-2.0.0/MSmix/man/confintMSmix.Rd | 42 MSmix-2.0.0/MSmix/man/data_augmentation.Rd | 2 MSmix-2.0.0/MSmix/man/data_censoring.Rd | 34 MSmix-2.0.0/MSmix/man/data_completion.Rd | 2 MSmix-2.0.0/MSmix/man/data_conversion.Rd | 6 MSmix-2.0.0/MSmix/man/data_description.Rd | 8 MSmix-2.0.0/MSmix/man/expected_spear_dist.Rd | 6 MSmix-2.0.0/MSmix/man/fitMSmix.Rd | 19 MSmix-2.0.0/MSmix/man/likMSmix.Rd | 10 MSmix-2.0.0/MSmix/man/partition_fun_spear.Rd | 23 MSmix-2.0.0/MSmix/man/plot.data_descr.Rd | 26 MSmix-2.0.0/MSmix/man/plot.dist.Rd | 6 MSmix-2.0.0/MSmix/man/plot.emMSmix.Rd | 9 MSmix-2.0.0/MSmix/man/rMSmix.Rd | 8 MSmix-2.0.0/MSmix/man/ranks_beers.Rd | 2 MSmix-2.0.0/MSmix/man/rearrange_output_mix.Rd |only MSmix-2.0.0/MSmix/man/spear_dist.Rd | 10 MSmix-2.0.0/MSmix/man/spear_dist_distr.Rd | 4 MSmix-2.0.0/MSmix/man/summary.emMSmix.Rd | 2 MSmix-2.0.0/MSmix/man/var_spear_dist.Rd | 15 31 files changed, 1436 insertions(+), 661 deletions(-)
Title: Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata',
'Systat', 'Weka', 'dBase', ...
Description: Reading and writing data stored by some versions of
'Epi Info', 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka',
and for reading and writing some 'dBase' files.
Author: R Core Team [aut, cph, cre] ,
Roger Bivand [ctb, cph],
Vincent J. Carey [ctb, cph],
Saikat DebRoy [ctb, cph],
Stephen Eglen [ctb, cph],
Rajarshi Guha [ctb, cph],
Swetlana Herbrandt [ctb],
Nicholas Lewin-Koh [ctb, cph],
Mark Myatt [ctb, cph],
Michael [...truncated...]
Maintainer: R Core Team <R-core@R-project.org>
Diff between foreign versions 0.8-88 dated 2025-01-12 and 0.8-89 dated 2025-03-25
ChangeLog | 17 ++++++++++++++- DESCRIPTION | 8 +++---- MD5 | 8 +++---- tests/spss.R | 3 +- tests/spss.Rout.save | 56 +++++++++++++++++++++++++-------------------------- 5 files changed, 54 insertions(+), 38 deletions(-)
Title: Bootstrap Inference for Multiple Imputation
Description: Bootstraps and imputes incomplete datasets. Then performs inference on estimates obtained from analysing the imputed datasets as proposed by von Hippel and Bartlett (2021) <doi:10.1214/20-STS793>.
Author: Jonathan Bartlett [aut, cre]
Maintainer: Jonathan Bartlett <jonathan.bartlett1@lshtm.ac.uk>
Diff between bootImpute versions 1.2.1 dated 2023-06-01 and 1.2.2 dated 2025-03-25
bootImpute-1.2.1/bootImpute/data/ex_linquad.rda |only bootImpute-1.2.1/bootImpute/man/ex_linquad.Rd |only bootImpute-1.2.2/bootImpute/DESCRIPTION | 14 bootImpute-1.2.2/bootImpute/MD5 | 34 bootImpute-1.2.2/bootImpute/NAMESPACE | 14 bootImpute-1.2.2/bootImpute/NEWS.md | 19 bootImpute-1.2.2/bootImpute/R/bootImpute.R | 522 +++++------ bootImpute-1.2.2/bootImpute/R/bootMice.R | 72 - bootImpute-1.2.2/bootImpute/R/bootSmcfcs.R | 64 - bootImpute-1.2.2/bootImpute/R/data.R | 33 bootImpute-1.2.2/bootImpute/build/partial.rdb |binary bootImpute-1.2.2/bootImpute/data/linquad.rda |only bootImpute-1.2.2/bootImpute/man/bootImpute.Rd | 164 +-- bootImpute-1.2.2/bootImpute/man/bootImputeAnalyse.Rd | 116 +- bootImpute-1.2.2/bootImpute/man/bootMice.Rd | 84 - bootImpute-1.2.2/bootImpute/man/bootSmcfcs.Rd | 88 - bootImpute-1.2.2/bootImpute/man/linquad.Rd |only bootImpute-1.2.2/bootImpute/tests/testthat.R | 10 bootImpute-1.2.2/bootImpute/tests/testthat/test_bootImpute.r | 338 +++---- bootImpute-1.2.2/bootImpute/tests/testthat/test_parallel.R | 302 +++--- 20 files changed, 940 insertions(+), 934 deletions(-)
Title: Bootstrapping in Different One-Way and Two-Way ANOVA
Description: To address the violation of the assumption of normally distributed variables, researchers frequently employ bootstrapping. Building upon established packages for R (Sigmann et al. (2024) <doi:10.32614/CRAN.package.afex>, Lenth (2024) <doi:10.32614/CRAN.package.emmeans>), we provide bootstrapping functions to approximate a normal distribution of the parameter estimates for between-subject, within-subject, and mixed one-way and two-way ANOVA.
Author: Lisa-Marie Segbert [aut],
Christian Bloetner [aut, cre]
Maintainer: Christian Bloetner <c.bloetner@gmail.com>
Diff between AOboot versions 0.1.1 dated 2024-11-22 and 0.1.2 dated 2025-03-25
DESCRIPTION | 8 MD5 | 6 R/AObootBetween.R | 1723 +++++++++++++++++++++++++++--------------------------- R/AObootMixed.R | 2 4 files changed, 870 insertions(+), 869 deletions(-)
Title: Genotyping Triploids (or Diploids) from Luminescence Data
Description: Genotyping of triploid individuals from luminescence data (marker probeset A and B). Works also for diploids.
Two main functions: Run_Clustering() that regroups individuals with a same genotype based on proximity and
Run_Genotyping() that assigns a genotype to each cluster. For Shiny interface use: launch_GenoShiny().
Author: Julien Roche [aut, cre],
Florence Phocas [aut],
Mathieu Besson [aut],
Pierre Patrice [aut],
Marc Vandeputte [aut],
Francois Allal [aut],
Pierrick Haffray [aut]
Maintainer: Julien Roche <julien.roche@inrae.fr>
Diff between GenoTriplo versions 1.1.2 dated 2024-12-04 and 1.1.3 dated 2025-03-25
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/function_clustering.R | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Density Strips and Other Methods for Compactly Illustrating
Distributions
Description: Graphical methods for compactly illustrating probability distributions, including density strips, density regions, sectioned density plots and varying width strips, using base R graphics. Note that the 'ggdist' package offers a similar set of tools for illustrating distributions, based on 'ggplot2'.
Author: Christopher Jackson [aut, cre]
Maintainer: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
Diff between denstrip versions 1.5.4 dated 2018-03-18 and 1.5.5 dated 2025-03-25
DESCRIPTION | 16 ++++++++++------ MD5 | 16 ++++++++-------- inst/CITATION | 10 ++++------ inst/NEWS | 6 ++++++ man/densregion.Rd | 3 ++- man/densregion.survfit.Rd | 2 +- man/denstrip-package.Rd | 3 +++ man/denstrip.Rd | 12 ++++++++---- man/denstrip.legend.Rd | 2 +- 9 files changed, 43 insertions(+), 27 deletions(-)
Title: Creating and Reading Data Packages
Description: Open, read data from and modify Data Packages. Data Packages are
an open standard for bundling and describing data sets
(<https://datapackage.org>). When data is read from a Data Package care is
taken to convert the data as much a possible to R appropriate data types.
The package can be extended with plugins for additional data types.
Author: Jan van der Laan [aut, cre]
Maintainer: Jan van der Laan <r@eoos.dds.nl>
Diff between datapackage versions 0.1.1 dated 2025-03-12 and 0.2.0 dated 2025-03-25
datapackage-0.1.1/datapackage/README.md |only datapackage-0.1.1/datapackage/inst/doc/support.R |only datapackage-0.2.0/datapackage/DESCRIPTION | 6 datapackage-0.2.0/datapackage/MD5 | 60 datapackage-0.2.0/datapackage/NAMESPACE | 5 datapackage-0.2.0/datapackage/NEWS | 28 datapackage-0.2.0/datapackage/R/check_constraint.R | 16 datapackage-0.2.0/datapackage/R/csv_writer.R | 2 datapackage-0.2.0/datapackage/R/dp_categorieslist.R | 5 datapackage-0.2.0/datapackage/R/dp_check_field.R | 113 datapackage-0.2.0/datapackage/R/dp_generate_fielddescriptor.R | 21 datapackage-0.2.0/datapackage/R/dp_to_code.R | 21 datapackage-0.2.0/datapackage/R/dp_to_factor.R | 35 datapackage-0.2.0/datapackage/R/field_yearmonth.R | 10 datapackage-0.2.0/datapackage/R/properties_fielddescriptor.R | 46 datapackage-0.2.0/datapackage/build/vignette.rds |binary datapackage-0.2.0/datapackage/inst/doc/creating_a_datapackage.R | 104 datapackage-0.2.0/datapackage/inst/doc/creating_a_datapackage.html | 641 ++++ datapackage-0.2.0/datapackage/inst/doc/introduction.R | 134 datapackage-0.2.0/datapackage/inst/doc/introduction.html | 867 +++++ datapackage-0.2.0/datapackage/inst/doc/support.html | 1569 +++++++++- datapackage-0.2.0/datapackage/inst/doc/support.md | 4 datapackage-0.2.0/datapackage/man/dp_generate_fielddescriptor.Rd | 10 datapackage-0.2.0/datapackage/man/dp_to_code.Rd | 6 datapackage-0.2.0/datapackage/man/dp_to_factor.Rd | 7 datapackage-0.2.0/datapackage/man/properties_dataresource.Rd | 3 datapackage-0.2.0/datapackage/man/properties_fielddescriptor.Rd | 9 datapackage-0.2.0/datapackage/tests/dp_check_field.R | 382 ++ datapackage-0.2.0/datapackage/tests/dp_generate_fielddescriptor.R | 61 datapackage-0.2.0/datapackage/tests/dp_to_code.R |only datapackage-0.2.0/datapackage/tests/dp_to_factor.R |only datapackage-0.2.0/datapackage/tests/properties_fielddescriptor.R | 15 datapackage-0.2.0/datapackage/vignettes/support.md | 4 33 files changed, 4093 insertions(+), 91 deletions(-)
More information about groupedHyperframe at CRAN
Permanent link
Title: CAESAR: a Cross-Technology and Cross-Resolution Framework for
Spatial Omics Annotation
Description: Biotechnology in spatial omics has advanced rapidly over the past few years, enhancing both throughput and resolution. However, existing annotation pipelines in spatial omics predominantly rely on clustering methods, lacking the flexibility to integrate extensive annotated information from single-cell RNA sequencing (scRNA-seq) due to discrepancies in spatial resolutions, species, or modalities. Here we introduce the CAESAR suite, an open-source software package that provides image-based spatial co-embedding of locations and genomic features. It uniquely transfers labels from scRNA-seq reference, enabling the annotation of spatial omics datasets across different technologies, resolutions, species, and modalities, based on the conserved relationship between signature genes and cells/locations at an appropriate level of granularity. Notably, CAESAR enriches location-level pathways, allowing for the detection of gradual biological pathway activation within spatially defined domain types. [...truncated...]
Author: Xiao Zhang [aut, cre],
Wei Liu [aut],
Jin Liu [aut]
Maintainer: Xiao Zhang <zhangxiao1994@cuhk.edu.cn>
Diff between CAESAR.Suite versions 0.2.0 dated 2025-03-03 and 0.2.1 dated 2025-03-25
DESCRIPTION | 6 - MD5 | 28 +++--- R/CAESAR_enrich_pathway.R | 12 ++ R/caesar_annotation.R | 2 R/caesar_enrichscore.R | 2 R/utilities.r | 6 + README.md | 2 inst/doc/STMOB.R | 5 - inst/doc/STMOB.Rmd | 5 - inst/doc/STMOB.html | 85 +++++++++----------- inst/doc/XeniumBC.R | 28 ++++-- inst/doc/XeniumBC.Rmd | 28 ++++-- inst/doc/XeniumBC.html | 193 ++++++++++++++++++++++++---------------------- vignettes/STMOB.Rmd | 5 - vignettes/XeniumBC.Rmd | 28 ++++-- 15 files changed, 247 insertions(+), 188 deletions(-)
Title: R Interface to the 'QuantLib' Library
Description: The 'RQuantLib' package makes parts of 'QuantLib' accessible from R
The 'QuantLib' project aims to provide a comprehensive software framework
for quantitative finance. The goal is to provide a standard open source library
for quantitative analysis, modeling, trading, and risk management of financial
assets.
Author: Dirk Eddelbuettel [aut, cre] ,
Khanh Nguyen [aut] ,
Terry Leitch [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RQuantLib versions 0.4.24 dated 2024-07-31 and 0.4.25 dated 2025-03-25
ChangeLog | 27 ++ DESCRIPTION | 14 - MD5 | 14 - configure | 622 +++++++++++++++++++++++++++------------------------- configure.ac | 10 data/tsQuotes.RData |binary data/vcube.RData |binary inst/NEWS.Rd | 9 8 files changed, 389 insertions(+), 307 deletions(-)
More information about ip2location.io at CRAN
Permanent link
Title: End-Member Modelling of Grain-Size Data
Description: End-member modelling analysis of grain-size data is an approach
to unmix a data set's underlying distributions and their contribution to
the data set. EMMAgeo provides deterministic and robust protocols for
that purpose.
Author: Michael Dietze [cre, aut, trl],
Elisabeth Dietze [ctb]
Maintainer: Michael Dietze <michael.dietze@uni-goettingen.de>
Diff between EMMAgeo versions 0.9.7 dated 2019-12-16 and 0.9.8 dated 2025-03-25
DESCRIPTION | 20 +++++--- MD5 | 104 ++++++++++++++++++++++----------------------- NEWS | 6 +- R/EMMA.R | 7 +-- R/EMMAgeo-package.R | 6 +- R/GUI.R | 4 - R/check.data.R | 7 ++- R/click.limits.R | 7 ++- R/convert.units.R | 5 +- R/create.EM.R | 5 +- R/get.l.R | 8 +++ R/get.l.opt.R | 9 ++- R/get.limits.R | 14 ++++-- R/get.q.R | 7 +-- R/interpolate.classes.R | 5 +- R/mix.EM.R | 5 +- R/model.EM.R | 8 ++- R/residual.EM.R | 6 ++ R/robust.EM.R | 19 ++++++-- R/robust.loadings.R | 5 +- R/robust.scores.R | 5 +- R/test.factors.R | 5 +- R/test.l.R | 7 ++- R/test.l.max.R | 12 +++-- R/test.parameters.R | 9 +++ R/test.robustness.R | 9 ++- R/zzz.R | 32 ++++++------- man/EMMA.Rd | 4 - man/EMMAgeo-package.Rd | 28 ++++++------ man/EMpot.Rd | 6 +- man/EMrob.Rd | 6 +- man/GUI.Rd | 5 -- man/X.Rd | 4 + man/check.data.Rd | 4 - man/click.limits.Rd | 4 - man/convert.units.Rd | 2 man/create.EM.Rd | 2 man/get.l.Rd | 5 +- man/get.l.opt.Rd | 6 +- man/get.limits.Rd | 5 -- man/get.q.Rd | 5 -- man/interpolate.classes.Rd | 2 man/mix.EM.Rd | 2 man/model.EM.Rd | 2 man/residual.EM.Rd | 2 man/robust.EM.Rd | 2 man/robust.loadings.Rd | 2 man/robust.scores.Rd | 2 man/test.factors.Rd | 2 man/test.l.Rd | 3 - man/test.l.max.Rd | 8 +-- man/test.parameters.Rd | 4 - man/test.robustness.Rd | 6 +- 53 files changed, 272 insertions(+), 187 deletions(-)
Title: Scalable Bayesian Disease Mapping Models for High-Dimensional
Data
Description: Implements several spatial and spatio-temporal scalable disease mapping models for high-dimensional count data using the INLA technique for approximate Bayesian inference in latent Gaussian models (Orozco-Acosta et al., 2021 <doi:10.1016/j.spasta.2021.100496>; Orozco-Acosta et al., 2023 <doi:10.1016/j.cmpb.2023.107403> and Vicente et al., 2023 <doi:10.1007/s11222-023-10263-x>). The creation and develpment of this package has been supported by Project MTM2017-82553-R (AEI/FEDER, UE) and Project PID2020-113125RB-I00/MCIN/AEI/10.13039/501100011033. It has also been partially funded by the Public University of Navarra (project PJUPNA2001).
Author: Aritz Adin [aut, cre] ,
Erick Orozco-Acosta [aut] ,
Maria Dolores Ugarte [aut]
Maintainer: Aritz Adin <aritz.adin@unavarra.es>
Diff between bigDM versions 0.5.5 dated 2024-08-19 and 0.5.6 dated 2025-03-25
DESCRIPTION | 12 MD5 | 24 - NAMESPACE | 4 NEWS | 5 R/CAR_INLA.R | 87 +--- R/MCAR_INLA.R | 48 -- R/STCAR_INLA.R | 1041 +++++++++++++++++++++++--------------------------- R/connect_subgraphs.R | 4 README.md | 5 build/partial.rdb |binary inst/CITATION | 4 man/CAR_INLA.Rd | 6 man/STCAR_INLA.Rd | 8 13 files changed, 575 insertions(+), 673 deletions(-)
Title: A 'shiny' Application for the (Audio-)Visualization of Adverse
Event Profiles
Description: Contains a 'shiny' application called AdEPro (Animation of Adverse Event Profiles) which (audio-)visualizes adverse events occurring in clinical trials. As this data is usually considered sensitive, this tool is provided as a stand-alone application that can be launched from any local machine on which the data is stored.
Author: Nicole Rethemeier [cre],
Christoph Tasto [aut],
Steffen Jeske [aut],
Bodo Kirsch [aut]
Maintainer: Nicole Rethemeier <nicole.rethemeier@bayer.com>
Diff between adepro versions 4.1.2 dated 2024-09-30 and 4.2.7 dated 2025-03-25
DESCRIPTION | 37 +++--- MD5 | 78 ++++++------- NAMESPACE | 1 R/adepro_slice_plot.R | 157 +++++++++++++++++++++----- R/bar_chart.R | 3 R/check_data.R | 2 R/circle_legend2.R |only R/count_event.R | 3 R/launch_adepro.R | 2 R/order_patient.R | 5 R/pie_legend2.R |only R/prepare_data.R | 33 ++--- R/server.R | 282 +++++++++++++++++++++++++++++++++++++++++------ R/ui.R | 52 ++++++-- README.md | 86 +++++++++----- inst/doc/adepro.html | 4 man/adae_data.Rd | 18 +-- man/adeproLogo.Rd | 38 +++--- man/adepro_slice_plot.Rd | 122 ++++++++++---------- man/adsl.Rd | 18 +-- man/ae_count.Rd | 38 +++--- man/bar_chart.Rd | 84 +++++++------- man/check_data.Rd | 34 ++--- man/circle_legend.Rd | 24 ++-- man/circle_legend2.Rd |only man/count_event.Rd | 34 ++--- man/initQ.Rd | 30 ++--- man/launch_adepro.Rd | 136 +++++++++++----------- man/my.symbols.Rd | 198 ++++++++++++++++----------------- man/order_patient.Rd | 58 ++++----- man/pie_legend.Rd | 42 +++---- man/pie_legend2.Rd |only man/prepare_data.Rd | 133 +++++++++++----------- man/preproc_ae.Rd | 30 ++--- man/preproc_patients.Rd | 34 ++--- man/server.Rd | 30 ++--- man/set_global_params.Rd | 54 ++++----- man/set_group_lines.Rd | 34 ++--- man/set_vector_layout.Rd | 34 ++--- man/set_width.Rd | 36 +++--- man/tone.Rd | 42 +++---- man/ui.Rd | 38 +++--- 42 files changed, 1236 insertions(+), 848 deletions(-)
Title: OLS, Moderated, Logistic, and Count Regressions Made Simple
Description: Provides SPSS- and SAS-like output for least squares multiple regression,
logistic regression, and count variable regressions. Detailed output is also provided for
OLS moderated regression, interaction plots, and Johnson-Neyman
regions of significance. The output includes standardized
coefficients, partial and semi-partial correlations, collinearity diagnostics,
plots of residuals, and detailed information about simple slopes for interactions.
The output for some functions includes Bayes Factors and, if requested,
regression coefficients from Bayesian Markov Chain Monte Carlo analyses.
There are numerous options for model plots.
The REGIONS_OF_SIGNIFICANCE function also provides
Johnson-Neyman regions of significance and plots of interactions for both lm
and lme models.
Author: Brian P. O'Connor [aut, cre]
Maintainer: Brian P. O'Connor <brian.oconnor@ubc.ca>
Diff between SIMPLE.REGRESSION versions 0.2.1 dated 2025-01-11 and 0.2.3 dated 2025-03-25
DESCRIPTION | 8 MD5 | 18 - NAMESPACE | 2 R/COUNT_REGRESSION.R | 12 - R/MODERATED_REGRESSION.R | 485 +++++++++++++++++++++++--------------------- R/PLOT_MODEL.R | 478 ++++++++++++++++++++++++++++++++++--------- R/utilities_boc.R | 345 ++++++++++++++----------------- man/MODERATED_REGRESSION.Rd | 5 man/OLS_REGRESSION.Rd | 2 man/PLOT_MODEL.Rd | 16 + 10 files changed, 840 insertions(+), 531 deletions(-)
More information about SIMPLE.REGRESSION at CRAN
Permanent link
Title: Environmental Seismology Toolbox
Description: Environmental seismology is a scientific field that studies the
seismic signals, emitted by Earth surface processes. This package
provides all relevant functions to read/write seismic data files, prepare,
analyse and visualise seismic data, and generate reports of the processing
history.
Author: Michael Dietze [cre, aut, trl],
Christoph Burow [ctb],
Sophie Lagarde [ctb, trl],
Clement Hibert [ctb, aut]
Maintainer: Michael Dietze <michael.dietze@uni-goettingen.de>
Diff between eseis versions 0.8.0 dated 2024-11-24 and 0.8.1 dated 2025-03-25
eseis-0.8.0/eseis/src/libmseed/ChangeLog |only eseis-0.8.0/eseis/src/libmseed/INSTALL.md |only eseis-0.8.0/eseis/src/libmseed/README.byteorder |only eseis-0.8.0/eseis/src/libmseed/doc |only eseis-0.8.1/eseis/DESCRIPTION | 8 eseis-0.8.1/eseis/MD5 | 150 ------- eseis-0.8.1/eseis/NEWS | 8 eseis-0.8.1/eseis/R/aux_hvanalysis.R | 4 eseis-0.8.1/eseis/R/aux_stationinfofile.R | 503 ++++++++++++++++-------- eseis-0.8.1/eseis/R/model_bedload.R | 33 + eseis-0.8.1/eseis/R/model_turbulence.R | 6 eseis-0.8.1/eseis/R/read_fdsn.R | 8 eseis-0.8.1/eseis/R/signal_snr.R | 89 +++- eseis-0.8.1/eseis/man/aux_hvanalysis.Rd | 4 eseis-0.8.1/eseis/man/aux_stationinfofile.Rd | 167 +++++-- eseis-0.8.1/eseis/man/model_bedload.Rd | 8 eseis-0.8.1/eseis/man/model_turbulence.Rd | 2 eseis-0.8.1/eseis/man/read_fdsn.Rd | 8 eseis-0.8.1/eseis/man/signal_snr.Rd | 39 + eseis-0.8.1/eseis/src/libmseed/fileutils.c | 187 -------- eseis-0.8.1/eseis/src/libmseed/genutils.c | 14 eseis-0.8.1/eseis/src/libmseed/logging.c | 18 eseis-0.8.1/eseis/src/parseMiniSEED.c | 12 23 files changed, 634 insertions(+), 634 deletions(-)
Title: The Standard Distribution Functions for the Truncated
Generalised Gamma Distribution
Description: Density, distribution function, quantile function and random generation for the Truncated Generalised Gamma Distribution (also in log10(x) and ln(x) space).
Author: Aaron Robotham [aut, cre],
Steven Murray [aut]
Maintainer: Aaron Robotham <aaron.robotham@uwa.edu.au>
Diff between tggd versions 0.1.1 dated 2015-12-03 and 0.1.3 dated 2025-03-25
tggd-0.1.1/tggd/NEWS |only tggd-0.1.3/tggd/DESCRIPTION | 19 +++++++--- tggd-0.1.3/tggd/MD5 | 11 ++---- tggd-0.1.3/tggd/R/tggd.R | 68 ++++++++++++++++++++++++++++++++++---- tggd-0.1.3/tggd/man/tggd.Rd | 12 +++++- tggd-0.1.3/tggd/man/tggd_ln.Rd | 6 ++- tggd-0.1.3/tggd/man/tggd_log.Rd | 71 ++++++++++++++++++++++++++++++++++++++-- 7 files changed, 162 insertions(+), 25 deletions(-)
Title: R Wrapper Around the Telegram Bot API
Description: A simple wrapper around the Telegram Bot API (<https://core.telegram.org/bots/api>) to access Telegram's messaging facilities with ease (e.g. you send messages, images, files from R to your smartphone).
Author: Luca Braglia [aut, cre]
Maintainer: Luca Braglia <lbraglia@gmail.com>
Diff between telegram versions 0.6.0 dated 2016-09-17 and 0.7.1 dated 2025-03-25
DESCRIPTION | 19 +- MD5 | 53 +++--- NAMESPACE | 3 NEWS |only R/TGBot.R | 343 ++++++++++++++++++++++++++++++++++++++---- R/get_telegram_envvar.R | 55 +++++- R/telegram_package.R | 3 README.md | 191 +++++++++++++++++++---- man/TGBot.Rd | 353 +++++++++++++++++++++++++++++++++++++++++++- man/bot_token.Rd | 3 man/forwardMessage.Rd | 11 + man/getFile.Rd | 1 man/getMe.Rd | 1 man/getUpdates.Rd | 4 man/getUserProfilePhotos.Rd | 7 man/group_id.Rd |only man/proxy.Rd |only man/sendAudio.Rd | 18 +- man/sendChatAction.Rd |only man/sendDice.Rd |only man/sendDocument.Rd | 11 + man/sendLocation.Rd | 13 + man/sendMessage.Rd | 15 + man/sendPhoto.Rd | 13 + man/sendPoll.Rd |only man/sendSticker.Rd | 11 + man/sendVideo.Rd | 10 - man/sendVoice.Rd | 13 + man/stopPoll.Rd |only man/telegram.Rd | 15 + man/user_id.Rd | 3 31 files changed, 1010 insertions(+), 159 deletions(-)
Title: A Bit of Glue Between R and Stata
Description: A simple R -> Stata interface allowing the user to
execute Stata commands (both inline and from a .do file)
from R.
Author: Luca Braglia [aut, cre]
Maintainer: Luca Braglia <lbraglia@gmail.com>
Diff between RStata versions 1.1.1 dated 2016-10-27 and 1.1.2 dated 2025-03-25
DESCRIPTION | 18 +++++++++--------- MD5 | 12 ++++++------ R/stata.R | 2 +- README.md | 14 ++++++++------ man/RStata.Rd | 13 ++++++++++++- man/chooseStataBin.Rd | 1 - man/stata.Rd | 18 +++++++++++------- 7 files changed, 47 insertions(+), 31 deletions(-)
Title: Image Processing Library Based on 'CImg'
Description: Fast image processing for images in up to 4 dimensions (two spatial
dimensions, one time/depth dimension, one colour dimension). Provides most
traditional image processing tools (filtering, morphology, transformations,
etc.) as well as various functions for easily analysing image data using R. The
package wraps 'CImg', <http://cimg.eu>, a simple, modern C++ library for image
processing.
Author: Simon Barthelme [aut],
David Tschumperle [ctb],
Jan Wijffels [ctb],
Haz Edine Assemlal [ctb],
Shota Ochi [ctb],
Aaron Robotham [cre],
Rodrigo Tobar [ctb]
Maintainer: Aaron Robotham <aaron.robotham@uwa.edu.au>
Diff between imager versions 1.0.2 dated 2024-05-13 and 1.0.3 dated 2025-03-25
DESCRIPTION | 12 MD5 | 34 NEWS.md | 4 R/cimg_class.R | 73 R/loading.R | 50 R/utils.R | 1 build/vignette.rds |binary configure | 3402 +++++++++++++++++++++++++++++++------------ configure.ac | 4 inst/doc/gettingstarted.html | 104 - inst/doc/pixsets.html | 72 man/capture.plot.Rd | 2 man/cimg.Rd | 4 man/display.cimg.Rd | 4 man/imager.Rd | 2 man/load.image.Rd | 7 man/make.video.Rd | 2 man/plot.cimg.Rd | 2 18 files changed, 2688 insertions(+), 1091 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-05 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-09-30 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-07 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-28 1.2.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-05-11 0.1.5
Title: Calculate Metrics for Trauma System Performance
Description: Hospitals, hospital systems, and even trauma systems that provide care to injured patients
may not be aware of robust metrics that can help gauge the efficacy of their programs in saving the lives
of injured patients. 'traumar' provides robust functions driven by the academic literature to
automate the calculation of relevant metrics to individuals desiring to measure the performance of their
trauma center or even a trauma system. 'traumar' also provides some helper functions for the data analysis
journey. Users can refer to the following publications for descriptions of the methods used in 'traumar'.
TRISS methodology, including probability of survival, and the W, M, and Z Scores - Flora (1978)
<doi:10.1097/00005373-197810000-00003>, Boyd et al. (1987, PMID:3106646), Llullaku et al. (2009)
<doi:10.1186/1749-7922-4-2>, Singh et al. (2011) <doi:10.4103/0974-2700.86626>, Baker et al. (1974, PMID:4814394),
and Champion et al. (1989) <doi:10.1097/00005373-198905000-0 [...truncated...]
Author: Nicolas Foss [aut, cre],
Iowa Department of Health and Human Services [cph]
Maintainer: Nicolas Foss <nicolas.foss@hhs.iowa.gov>
Diff between traumar versions 1.0.0 dated 2025-02-21 and 1.1.0 dated 2025-03-25
DESCRIPTION | 10 MD5 | 24 - NEWS.md | 76 ++- R/globalVariables.R | 7 R/non_linear_bins.R | 244 +++++++--- R/relative_mortality.R | 691 ++++++++++++++++++++++--------- README.md | 50 +- build/partial.rdb |binary man/nonlinear_bins.Rd | 78 +++ man/rm_bin_summary.Rd | 113 ++++- man/rmm.Rd | 134 ++++-- tests/testthat/test-non_linear_bins.R | 236 +++++++++- tests/testthat/test-relative_mortality.R | 176 +++++++ 13 files changed, 1419 insertions(+), 420 deletions(-)
Title: Multiple Imputation of Covariates by Substantive Model
Compatible Fully Conditional Specification
Description: Implements multiple imputation of missing covariates by
Substantive Model Compatible Fully Conditional Specification.
This is a modification of the popular FCS/chained equations
multiple imputation approach, and allows imputation of missing
covariate values from models which are compatible with the user
specified substantive model.
Author: Jonathan Bartlett [aut, cre],
Ruth Keogh [aut],
Edouard F. Bonneville [aut],
Lars van der Burg [aut],
Claus Thorn Ekstroem [ctb]
Maintainer: Jonathan Bartlett <jonathan.bartlett1@lshtm.ac.uk>
Diff between smcfcs versions 1.9.2 dated 2025-01-20 and 2.0.0 dated 2025-03-25
smcfcs-1.9.2/smcfcs/inst/doc/smcfcs_coverror-vignette.R |only smcfcs-1.9.2/smcfcs/inst/doc/smcfcs_coverror-vignette.Rmd |only smcfcs-1.9.2/smcfcs/inst/doc/smcfcs_coverror-vignette.html |only smcfcs-1.9.2/smcfcs/vignettes/smcfcs_coverror-vignette.Rmd |only smcfcs-2.0.0/smcfcs/DESCRIPTION | 10 smcfcs-2.0.0/smcfcs/MD5 | 82 ++-- smcfcs-2.0.0/smcfcs/R/data.r | 26 + smcfcs-2.0.0/smcfcs/R/plot.smcfcs.R | 2 smcfcs-2.0.0/smcfcs/R/smcfcs.flexsurv.r | 24 - smcfcs-2.0.0/smcfcs/R/smcfcs.parallel.r | 4 smcfcs-2.0.0/smcfcs/R/smcfcs.r | 230 +++++++++++-- smcfcs-2.0.0/smcfcs/build/partial.rdb |binary smcfcs-2.0.0/smcfcs/build/vignette.rds |binary smcfcs-2.0.0/smcfcs/data/ex_cc.rda |binary smcfcs-2.0.0/smcfcs/data/ex_coarsening.rda |only smcfcs-2.0.0/smcfcs/data/ex_compet.rda |binary smcfcs-2.0.0/smcfcs/data/ex_coxquad.rda |binary smcfcs-2.0.0/smcfcs/data/ex_dtsam.rda |binary smcfcs-2.0.0/smcfcs/data/ex_finegray.rda |binary smcfcs-2.0.0/smcfcs/data/ex_flexsurv.rda |binary smcfcs-2.0.0/smcfcs/data/ex_lininter.rda |binary smcfcs-2.0.0/smcfcs/data/ex_linquad.rda |binary smcfcs-2.0.0/smcfcs/data/ex_logisticquad.rda |binary smcfcs-2.0.0/smcfcs/data/ex_ncc.rda |binary smcfcs-2.0.0/smcfcs/data/ex_poisson.rda |binary smcfcs-2.0.0/smcfcs/inst/doc/coarsening.R |only smcfcs-2.0.0/smcfcs/inst/doc/coarsening.Rmd |only smcfcs-2.0.0/smcfcs/inst/doc/coarsening.html |only smcfcs-2.0.0/smcfcs/inst/doc/coverror.R |only smcfcs-2.0.0/smcfcs/inst/doc/coverror.Rmd |only smcfcs-2.0.0/smcfcs/inst/doc/coverror.html |only smcfcs-2.0.0/smcfcs/inst/doc/smcfcs-vignette.R | 20 - smcfcs-2.0.0/smcfcs/inst/doc/smcfcs-vignette.Rmd | 34 - smcfcs-2.0.0/smcfcs/inst/doc/smcfcs-vignette.html | 116 ++---- smcfcs-2.0.0/smcfcs/man/ex_coarsening.Rd |only smcfcs-2.0.0/smcfcs/man/ex_coxquad.Rd | 3 smcfcs-2.0.0/smcfcs/man/ex_linquad.Rd | 3 smcfcs-2.0.0/smcfcs/man/ex_logisticquad.Rd | 3 smcfcs-2.0.0/smcfcs/man/smcfcs.Rd | 37 +- smcfcs-2.0.0/smcfcs/man/smcfcs.casecohort.Rd | 51 -- smcfcs-2.0.0/smcfcs/man/smcfcs.dtsam.Rd | 52 -- smcfcs-2.0.0/smcfcs/man/smcfcs.flexsurv.Rd | 70 +-- smcfcs-2.0.0/smcfcs/man/smcfcs.nestedcc.Rd | 60 --- smcfcs-2.0.0/smcfcs/tests/testthat/test_flexsurv.r | 81 ++++ smcfcs-2.0.0/smcfcs/tests/testthat/test_parallel.r | 56 +++ smcfcs-2.0.0/smcfcs/tests/testthat/test_podds.r |only smcfcs-2.0.0/smcfcs/tests/testthat/test_restrictions.r |only smcfcs-2.0.0/smcfcs/vignettes/coarsening.Rmd |only smcfcs-2.0.0/smcfcs/vignettes/coverror.Rmd |only smcfcs-2.0.0/smcfcs/vignettes/smcfcs-vignette.Rmd | 34 - 50 files changed, 581 insertions(+), 417 deletions(-)
Title: R at the Command-Line via 'r'
Description: A scripting and command-line front-end
is provided by 'r' (aka 'littler') as a lightweight binary wrapper around
the GNU R language and environment for statistical computing and graphics.
While R can be used in batch mode, the r binary adds full support for
both 'shebang'-style scripting (i.e. using a hash-mark-exclamation-path
expression as the first line in scripts) as well as command-line use in
standard Unix pipelines. In other words, r provides the R language without
the environment.
Author: Dirk Eddelbuettel [aut, cre] ,
Jeff Horner [aut] )
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between littler versions 0.3.20 dated 2024-03-23 and 0.3.21 dated 2025-03-25
ChangeLog | 126 ++++++++ DESCRIPTION | 19 - MD5 | 41 +- README.md | 2 build/vignette.rds |binary cleanup | 2 configure | 593 ++++++++++++++++++++++------------------- configure.ac | 26 - inst/NEWS.Rd | 34 ++ inst/doc/littler-examples.html | 154 +++++----- inst/doc/littler-faq.html | 23 + inst/examples/ciw.r | 13 inst/examples/crup.r |only inst/examples/deadliners.r |only inst/examples/installRub.r | 18 - inst/examples/kitten.r | 23 + inst/examples/r2u.r | 31 +- inst/examples/rcc.r | 4 inst/examples/tttl.r | 8 inst/examples/wb.r |only inst/man-page/r.1 | 3 src/config.h.in | 3 src/littler.c | 11 23 files changed, 701 insertions(+), 433 deletions(-)
Title: A 'shiny' Application for Exploring Laboratory Data
Description: A novel concept for generating knowledge and gaining insights into laboratory data. You will be able to efficiently and easily explore your laboratory data from different perspectives. Janitza, S., Majumder, M., Mendolia, F., Jeske, S., & Kulmann, H. (2021) <doi:10.1007/s43441-021-00318-4>.
Author: Silke Janitza [aut],
Steffen Jeske [aut],
Madhurima Majumder [aut],
Franco Mendolia [aut],
Bodo Kirsch [cre],
Hermann Kulmann [aut]
Maintainer: Bodo Kirsch <kirschbodo@gmail.com>
Diff between elaborator versions 1.3.4 dated 2024-09-18 and 1.3.5 dated 2025-03-25
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: International Cricket Data
Description: Data on international and other major cricket matches from
ESPNCricinfo <https://www.espncricinfo.com> and Cricsheet <https://cricsheet.org>.
This package provides some functions to download the data into tibbles ready
for analysis.
Author: Rob Hyndman [aut, cre],
Charles Gray [aut],
Sayani Gupta [aut],
Timothy Hyndman [aut],
Hassan Rafique [aut],
Jacquie Tran [aut],
Puwasala Gamakumara [ctb],
Alex Whan [ctb]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between cricketdata versions 0.2.3 dated 2023-08-29 and 0.3.0 dated 2025-03-25
cricketdata-0.2.3/cricketdata/man/reexports.Rd |only cricketdata-0.3.0/cricketdata/DESCRIPTION | 12 cricketdata-0.3.0/cricketdata/MD5 | 78 +- cricketdata-0.3.0/cricketdata/NAMESPACE | 2 cricketdata-0.3.0/cricketdata/NEWS.md | 8 cricketdata-0.3.0/cricketdata/R/cricketdata.R | 4 cricketdata-0.3.0/cricketdata/R/data.R | 8 cricketdata-0.3.0/cricketdata/R/fetch_cricket_data.R | 6 cricketdata-0.3.0/cricketdata/R/fetch_player.R | 107 +-- cricketdata-0.3.0/cricketdata/R/fetch_player_meta.R | 114 +-- cricketdata-0.3.0/cricketdata/R/sysdata.rda |only cricketdata-0.3.0/cricketdata/R/update_player_meta.R | 2 cricketdata-0.3.0/cricketdata/build/vignette.rds |binary cricketdata-0.3.0/cricketdata/data/cricsheet_codes.rda |binary cricketdata-0.3.0/cricketdata/data/player_meta.rda |binary cricketdata-0.3.0/cricketdata/inst/doc/cricinfo.R | 60 - cricketdata-0.3.0/cricketdata/inst/doc/cricinfo.Rmd | 46 - cricketdata-0.3.0/cricketdata/inst/doc/cricinfo.html | 309 +++++----- cricketdata-0.3.0/cricketdata/inst/doc/cricketdata_R_pkg.R | 174 ++--- cricketdata-0.3.0/cricketdata/inst/doc/cricketdata_R_pkg.Rmd | 90 +- cricketdata-0.3.0/cricketdata/inst/doc/cricketdata_R_pkg.html | 308 +++++---- cricketdata-0.3.0/cricketdata/inst/doc/cricsheet.R | 124 ++-- cricketdata-0.3.0/cricketdata/inst/doc/cricsheet.Rmd | 106 +-- cricketdata-0.3.0/cricketdata/inst/doc/cricsheet.html | 114 +-- cricketdata-0.3.0/cricketdata/inst/extdata/Indfielding.rds |binary cricketdata-0.3.0/cricketdata/inst/extdata/MegLanning.rds |binary cricketdata-0.3.0/cricketdata/inst/extdata/aus_women.rds |binary cricketdata-0.3.0/cricketdata/inst/extdata/ipl_bbb.rds |binary cricketdata-0.3.0/cricketdata/inst/extdata/meg_lanning_id.rds |binary cricketdata-0.3.0/cricketdata/inst/extdata/menODI.rds |binary cricketdata-0.3.0/cricketdata/inst/extdata/usmenODI.rds |binary cricketdata-0.3.0/cricketdata/inst/extdata/wbbl_bbb.rds |binary cricketdata-0.3.0/cricketdata/inst/extdata/wbbl_match_info.rds |binary cricketdata-0.3.0/cricketdata/inst/extdata/wt20.rds |binary cricketdata-0.3.0/cricketdata/man/cricsheet_codes.Rd | 4 cricketdata-0.3.0/cricketdata/man/fetch_player_meta.Rd | 4 cricketdata-0.3.0/cricketdata/man/player_meta.Rd | 4 cricketdata-0.3.0/cricketdata/man/update_player_meta.Rd | 2 cricketdata-0.3.0/cricketdata/vignettes/cricinfo.Rmd | 46 - cricketdata-0.3.0/cricketdata/vignettes/cricketdata_R_pkg.Rmd | 90 +- cricketdata-0.3.0/cricketdata/vignettes/cricsheet.Rmd | 106 +-- 41 files changed, 973 insertions(+), 955 deletions(-)