Title: Machine Learning for Merging Satellite and Ground Precipitation
Data
Description: A machine learning algorithm that merges satellite and ground precipitation data using Random Forest for spatial prediction, residual modeling for bias correction, and quantile mapping for adjustment, ensuring accurate estimates across temporal scales and regions.
Author: Jonnathan Augusto Landi Bermeo [aut, cre, cph]
,
Alex Aviles [aut] ,
Dario Zhina [aut] ,
Marco Mogro [aut] ,
Anthony Guaman [aut]
Maintainer: Jonnathan Augusto Landi Bermeo <jonnathan.landi@outlook.com>
Diff between RFplus versions 1.4-0 dated 2025-03-10 and 1.5-4 dated 2025-03-31
DESCRIPTION | 8 - MD5 | 38 +++--- NEWS.md | 32 ++++- R/RFplus.R | 164 ++++++++++++++++------------ build/vignette.rds |binary data/BD_Insitu.RData |binary data/Cords_Insitu.RData |binary inst/NEWS | 13 ++ inst/doc/RFplus.Rmd | 224 +++++++++++++++++++------------------- inst/doc/RFplus.html | 91 +++++++-------- inst/extdata/BD_Insitu.csv | 242 +++++++++++++++++++++--------------------- inst/extdata/CHIRPS.nc |binary inst/extdata/Cords_Insitu.csv | 24 +--- inst/extdata/DEM.nc |binary inst/extdata/MSWEP.nc |binary man/BD_Insitu.Rd | 2 man/Cords_Insitu.Rd | 8 + man/RFplus.Rd | 24 +++- tests/testthat/test-RFplus.R | 2 vignettes/RFplus.Rmd | 224 +++++++++++++++++++------------------- 20 files changed, 581 insertions(+), 515 deletions(-)
Title: Bayesian Penalized Quantile Regression
Description: Bayesian regularized quantile regression utilizing sparse priors to
impose exact sparsity leads to efficient Bayesian shrinkage estimation, variable
selection and statistical inference. In this package, we have implemented robust
Bayesian variable selection with spike-and-slab priors under high-dimensional
linear regression models (Fan et al. (2024) <doi:10.3390/e26090794> and
Ren et al. (2023) <doi:10.1111/biom.13670>), and regularized quantile varying
coefficient models (Zhou et al.(2023) <doi:10.1016/j.csda.2023.107808>). In particular,
valid robust Bayesian inferences under both models in the presence of heavy-tailed errors
can be validated on finite samples. Additional models including robust Bayesian
group LASSO are also included. The Markov Chain Monte Carlo (MCMC) algorithms
of the proposed and alternative models are implemented in C++.
Author: Kun Fan [aut],
Cen Wu [aut, cre],
Jie Ren [aut],
Xiaoxi Li [aut],
Fei Zhou [aut]
Maintainer: Cen Wu <wucen@ksu.edu>
Diff between pqrBayes versions 1.1.1 dated 2025-02-23 and 1.1.2 dated 2025-03-31
DESCRIPTION | 15 - MD5 | 73 +++---- NAMESPACE | 24 +- NEWS.md | 88 ++++---- R/NonRobust.R | 150 +++++++------- R/NonRobust_vc.R | 150 +++++++------- R/Robust_vc.R | 164 ++++++++-------- R/coverage.R | 75 +++---- R/coverage_lin.R | 22 +- R/coverage_vc.R | 88 ++++---- R/data.R | 104 +++++----- R/estimation.R | 81 ++++---- R/estimation_lin.R | 24 +- R/estimation_vc.R | 126 ++++++------ R/nonrobust_g.R |only R/nonrobust_lin.R | 75 +++---- R/pqrBayes-package.R | 120 +++++------ R/pqrBayes.R | 54 +++-- R/pqrBayes_g.R |only R/pqrBayes_lin.R | 38 +-- R/pqrBayes_vc.R | 38 +-- R/predict.pqrBayes.R | 99 +++++---- R/predict_lin.R | 114 +++++------ R/predict_vc.R | 148 +++++++------- R/print.pqrBayes.R | 106 +++++----- R/robust_g.R |only R/robust_lin.R | 84 ++++---- R/select.pqrBayes.R | 151 +++++++------- R/select_lin.R | 78 +++---- R/select_vc.R | 88 ++++---- README.md | 455 +++++++++++++++++++++++++-------------------- data/data.rda |binary man/coverage.Rd | 8 man/data.Rd | 18 + man/estimation.pqrBayes.Rd | 6 man/pqrBayes-package.Rd | 10 man/pqrBayes.Rd | 46 +++- man/predict_pqrBayes.Rd | 10 man/select.pqrBayes.Rd | 8 39 files changed, 1548 insertions(+), 1390 deletions(-)
Title: Tools for Analyzing Time Series Data of Just Finance and
Econometrics
Description: Offers procedures to support financial-economic time series modelling and enhanced procedures for computing the investment performance indices of Bacon (2004) <DOI:10.1002/9781119206309>.
Author: Ho Tsung-wu [aut, cre]
Maintainer: Ho Tsung-wu <tsungwu@ntnu.edu.tw>
Diff between JFE versions 2.5.8 dated 2025-01-24 and 2.5.9 dated 2025-03-31
JFE-2.5.8/JFE/man/getBIS.Rd |only JFE-2.5.9/JFE/DESCRIPTION | 8 ++-- JFE-2.5.9/JFE/MD5 | 8 ++-- JFE-2.5.9/JFE/R/dataDownload.R | 81 ++++++++++++++++++++++++++++------------- JFE-2.5.9/JFE/man/getEER.Rd |only JFE-2.5.9/JFE/man/getFed.Rd | 20 +++------- 6 files changed, 70 insertions(+), 47 deletions(-)
Title: Analyze Results Generated by the 'SqueezeMeta' Pipeline
Description: 'SqueezeMeta' is a versatile pipeline for the automated analysis of metagenomics/metatranscriptomics data (<https://github.com/jtamames/SqueezeMeta>). This package provides functions loading 'SqueezeMeta' results into R, filtering them based on different criteria, and visualizing the results using basic plots. The 'SqueezeMeta' project (and any subsets of it generated by the different filtering functions) is parsed into a single object, whose different components (e.g. tables with the taxonomic or functional composition across samples, contig/gene abundance profiles) can be easily analyzed using other R packages such as 'vegan' or 'DESeq2'. The methods in this package are further described in Puente-Sánchez et al., (2020) <doi:10.1186/s12859-020-03703-2>.
Author: Fernando Puente-Sanchez [aut, cre],
Natalia Garcia-Garcia [aut]
Maintainer: Fernando Puente-Sanchez <fernando.puente.sanchez@slu.se>
Diff between SQMtools versions 1.6.3 dated 2023-09-18 and 1.7.0 dated 2025-03-31
DESCRIPTION | 10 - MD5 | 90 ++++++---- NAMESPACE | 15 + R/CheckMProkaryote.R |only R/USiCGs.R | 4 R/aggregate_methods.R | 3 R/bin_methods.R |only R/combineSQM.R | 224 +++++++++++++-------------- R/combineSQMlite.R | 4 R/copy_number.R |only R/exportKrona.R | 6 R/exportPathway.R | 48 +++-- R/exportSeqs.R |only R/exportTable.R | 11 - R/extra_methods.R | 57 +++--- R/figures.R | 30 ++- R/genericTable.R | 9 - R/loadSQM.R | 194 +++++++++++++---------- R/loadSQMlite.R | 2 R/seqvec2fasta.R | 6 R/subset_methods.R | 340 ++++++++++++++++++++++++++++------------- R/summary_bunch.R |only R/summary_lite.R | 2 data/CheckMProkaryote.RData |only data/Hadza.RData |binary data/MGKOs.RData |binary data/MGOGs.RData |binary data/RecA.RData |binary data/USiCGs.RData |binary man/CheckMProkaryote.Rd |only man/USiCGs.Rd | 4 man/combineSQM.Rd | 19 +- man/create_bin.Rd |only man/exportBins.Rd |only man/exportContigs.Rd |only man/exportKrona.Rd | 4 man/exportORFs.Rd |only man/exportPathway.Rd | 19 +- man/exportTable.Rd | 11 - man/find_redundant_contigs.Rd |only man/loadSQM.Rd | 20 +- man/loadSQMlite.Rd | 2 man/plotBins.Rd | 4 man/plotFunctions.Rd | 7 man/plotTaxonomy.Rd | 2 man/remove_contigs_from_bin.Rd |only man/seqvec2fasta.Rd | 7 man/subsetBins.Rd | 5 man/subsetContigs.Rd | 8 man/subsetFun.Rd | 14 + man/subsetORFs.Rd | 10 - man/subsetTax.Rd | 14 + man/summary.SQMbunch.Rd |only 53 files changed, 729 insertions(+), 476 deletions(-)
Title: Kidney-Related Functions for Clinical and Epidemiological
Research
Description: Contains kidney care oriented functions.
Current version contains functions for calculation of:
- Estimated glomerular filtration rate by CKD-EPI (2021 and 2009), MDRD, CKiD, FAS, EKFC, etc.
- Kidney Donor Risk Index and Kidney Donor Profile Index for kidney transplant donors.
- Citation: Bikbov B. kidney.epi: Kidney-Related Functions for Clinical and Epidemiological Research. Scientific-Tools.Org, <https://Scientific-Tools.Org>. <doi:10.32614/CRAN.package.kidney.epi>.
Author: Boris Bikbov [aut, cre]
Maintainer: Boris Bikbov <boris.bikbov@scientific-tools.org>
Diff between kidney.epi versions 1.2.0 dated 2020-03-04 and 1.3.0 dated 2025-03-31
kidney.epi-1.2.0/kidney.epi/R/egfr.R |only kidney.epi-1.2.0/kidney.epi/data/ktx.RData |only kidney.epi-1.2.0/kidney.epi/man/egfr.ckdepi.Rd |only kidney.epi-1.2.0/kidney.epi/man/kidney.epi.Rd |only kidney.epi-1.2.0/kidney.epi/man/ktx.Rd |only kidney.epi-1.2.0/kidney.epi/man/service.check_obligatory_params.Rd |only kidney.epi-1.2.0/kidney.epi/man/service.check_param_arguments.Rd |only kidney.epi-1.2.0/kidney.epi/man/service.check_param_number.Rd |only kidney.epi-1.2.0/kidney.epi/man/service.check_params_numeric.Rd |only kidney.epi-1.2.0/kidney.epi/man/service.check_plausibility.age.Rd |only kidney.epi-1.2.0/kidney.epi/man/service.check_plausibility.creatinine.Rd |only kidney.epi-1.2.0/kidney.epi/man/service.count_greater_threshhold.Rd |only kidney.epi-1.2.0/kidney.epi/man/service.count_lowerequal_threshhold.Rd |only kidney.epi-1.2.0/kidney.epi/man/service.is.param_possible.Rd |only kidney.epi-1.2.0/kidney.epi/man/service.is_numeric.Rd |only kidney.epi-1.2.0/kidney.epi/man/service.output_message.Rd |only kidney.epi-1.2.0/kidney.epi/man/service.singular_or_plural.Rd |only kidney.epi-1.2.0/kidney.epi/man/service.strict_to_numeric_threshhold_greater.Rd |only kidney.epi-1.2.0/kidney.epi/man/service.strict_to_numeric_threshhold_lower.Rd |only kidney.epi-1.3.0/kidney.epi/DESCRIPTION | 26 kidney.epi-1.3.0/kidney.epi/MD5 | 107 +- kidney.epi-1.3.0/kidney.epi/NAMESPACE | 34 kidney.epi-1.3.0/kidney.epi/NEWS | 17 kidney.epi-1.3.0/kidney.epi/R/ckd_classify.R |only kidney.epi-1.3.0/kidney.epi/R/data.R | 31 kidney.epi-1.3.0/kidney.epi/R/egfr_ckdepi2009.R |only kidney.epi-1.3.0/kidney.epi/R/egfr_ckdepi2021.R |only kidney.epi-1.3.0/kidney.epi/R/egfr_ckid.R |only kidney.epi-1.3.0/kidney.epi/R/egfr_ekfc.R |only kidney.epi-1.3.0/kidney.epi/R/egfr_fas.R |only kidney.epi-1.3.0/kidney.epi/R/egfr_mdrd.R |only kidney.epi-1.3.0/kidney.epi/R/egfr_other_adults.R |only kidney.epi-1.3.0/kidney.epi/R/egfr_other_children.R |only kidney.epi-1.3.0/kidney.epi/R/kidney.epi.R | 19 kidney.epi-1.3.0/kidney.epi/R/ktx.kdpi.optn.R | 142 +-- kidney.epi-1.3.0/kidney.epi/R/matrix.R |only kidney.epi-1.3.0/kidney.epi/R/service.check_plausibility.R | 153 ++- kidney.epi-1.3.0/kidney.epi/R/service.general.R | 195 ++-- kidney.epi-1.3.0/kidney.epi/R/sysdata.rda |binary kidney.epi-1.3.0/kidney.epi/README.md | 55 - kidney.epi-1.3.0/kidney.epi/build/vignette.rds |binary kidney.epi-1.3.0/kidney.epi/data/ckd.data.rda |only kidney.epi-1.3.0/kidney.epi/data/ktx.data.rda |only kidney.epi-1.3.0/kidney.epi/inst/CITATION | 20 kidney.epi-1.3.0/kidney.epi/inst/doc/gfr.R | 60 + kidney.epi-1.3.0/kidney.epi/inst/doc/gfr.Rmd | 121 ++ kidney.epi-1.3.0/kidney.epi/inst/doc/gfr.html | 450 +++++++--- kidney.epi-1.3.0/kidney.epi/inst/doc/ktx.R | 31 kidney.epi-1.3.0/kidney.epi/inst/doc/ktx.Rmd | 53 - kidney.epi-1.3.0/kidney.epi/inst/doc/ktx.html | 399 +++++--- kidney.epi-1.3.0/kidney.epi/inst/doc/services.Rmd |only kidney.epi-1.3.0/kidney.epi/inst/doc/services.html |only kidney.epi-1.3.0/kidney.epi/inst/figures |only kidney.epi-1.3.0/kidney.epi/man/ckd.data.Rd |only kidney.epi-1.3.0/kidney.epi/man/egfr.ckdepi.cr.2009.Rd |only kidney.epi-1.3.0/kidney.epi/man/egfr.ckdepi.cr.2021.Rd |only kidney.epi-1.3.0/kidney.epi/man/egfr.ckdepi.cr.Rd |only kidney.epi-1.3.0/kidney.epi/man/egfr.ckdepi.cr_cys.2021.Rd |only kidney.epi-1.3.0/kidney.epi/man/egfr.ckid_u25.cr.Rd |only kidney.epi-1.3.0/kidney.epi/man/egfr.ckid_u25.cys.Rd |only kidney.epi-1.3.0/kidney.epi/man/egfr.ekfc.cr.Rd |only kidney.epi-1.3.0/kidney.epi/man/egfr.ekfc.cys.Rd |only kidney.epi-1.3.0/kidney.epi/man/egfr.fas.cr.Rd |only kidney.epi-1.3.0/kidney.epi/man/egfr.fas.cr_cys.Rd |only kidney.epi-1.3.0/kidney.epi/man/egfr.fas.cys.Rd |only kidney.epi-1.3.0/kidney.epi/man/egfr.lm.cr.Rd |only kidney.epi-1.3.0/kidney.epi/man/egfr.mdrd4.Rd | 37 kidney.epi-1.3.0/kidney.epi/man/egfr.schwartz.Rd | 37 kidney.epi-1.3.0/kidney.epi/man/figures |only kidney.epi-1.3.0/kidney.epi/man/ktx.data.Rd |only kidney.epi-1.3.0/kidney.epi/man/ktx.kdpi.optn.Rd | 43 kidney.epi-1.3.0/kidney.epi/man/matrix.cross_table.Rd |only kidney.epi-1.3.0/kidney.epi/man/matrix.get_named_matrix_value.Rd |only kidney.epi-1.3.0/kidney.epi/man/matrix.read_excel_to_named_matrix.Rd |only kidney.epi-1.3.0/kidney.epi/man/matrix.save_named_matrix_to_excel.Rd |only kidney.epi-1.3.0/kidney.epi/man/nephro.albuminuria_category.Rd |only kidney.epi-1.3.0/kidney.epi/man/nephro.gfr_category.Rd |only kidney.epi-1.3.0/kidney.epi/man/nephro.kdigo_risk_category.Rd |only kidney.epi-1.3.0/kidney.epi/man/nephro.proteinuria_category.Rd |only kidney.epi-1.3.0/kidney.epi/man/service.convert_creatinine.Rd | 20 kidney.epi-1.3.0/kidney.epi/man/service.convert_cystatin.Rd |only kidney.epi-1.3.0/kidney.epi/vignettes/gfr.Rmd | 121 ++ kidney.epi-1.3.0/kidney.epi/vignettes/ktx.Rmd | 53 - kidney.epi-1.3.0/kidney.epi/vignettes/services.Rmd |only 84 files changed, 1472 insertions(+), 752 deletions(-)
Title: Companion Tools for Open-Source Tools for Training Resources
(OTTR)
Description: Tools for converting Open-Source Tools for Training Resources
(OTTR) courses into Leanpub or Coursera courses. 'ottrpal' is for use
with the OTTR Template repository to create courses.
Author: Candace Savonen [aut, cre] ,
Carrie Wright [ctb],
Howard Baek [ctb],
Kate Isaac [ctb]
Maintainer: Candace Savonen <cansav09@gmail.com>
Diff between ottrpal versions 1.2.1 dated 2024-01-09 and 2.0.0 dated 2025-03-31
ottrpal-1.2.1/ottrpal/R/aaa_utils.R |only ottrpal-1.2.1/ottrpal/R/bookdown_to_leanpub.R |only ottrpal-1.2.1/ottrpal/R/coursera.R |only ottrpal-1.2.1/ottrpal/R/data.R |only ottrpal-1.2.1/ottrpal/R/example_data.R |only ottrpal-1.2.1/ottrpal/R/footnotes.R |only ottrpal-1.2.1/ottrpal/R/gs_png.R |only ottrpal-1.2.1/ottrpal/R/leanpub_checks.R |only ottrpal-1.2.1/ottrpal/R/quiz.R |only ottrpal-1.2.1/ottrpal/R/remove_yaml.R |only ottrpal-1.2.1/ottrpal/R/replace_html.R |only ottrpal-1.2.1/ottrpal/R/set_knitr_image_path.R |only ottrpal-1.2.1/ottrpal/R/set_up.R |only ottrpal-1.2.1/ottrpal/R/simple_references.R |only ottrpal-1.2.1/ottrpal/R/utils-pipe.R |only ottrpal-1.2.1/ottrpal/R/zzz.R |only ottrpal-1.2.1/ottrpal/inst/extdata/01-intro.Rmd |only ottrpal-1.2.1/ottrpal/inst/extdata/02-example-chapter.Rmd |only ottrpal-1.2.1/ottrpal/inst/extdata/Book.txt |only ottrpal-1.2.1/ottrpal/inst/extdata/_bookdown.yml |only ottrpal-1.2.1/ottrpal/inst/extdata/index.Rmd |only ottrpal-1.2.1/ottrpal/inst/extdata/references.bib |only ottrpal-1.2.1/ottrpal/inst/extdata/resources/chapt_screen_images |only ottrpal-1.2.1/ottrpal/inst/extdata/resources/chapter_urls.tsv |only ottrpal-1.2.1/ottrpal/inst/extdata/tmp |only ottrpal-1.2.1/ottrpal/inst/extdata/toc_close.css |only ottrpal-1.2.1/ottrpal/man/bookdown_destination.Rd |only ottrpal-1.2.1/ottrpal/man/bookdown_file.Rd |only ottrpal-1.2.1/ottrpal/man/bookdown_path.Rd |only ottrpal-1.2.1/ottrpal/man/bookdown_rmd_files.Rd |only ottrpal-1.2.1/ottrpal/man/bookdown_to_book_txt.Rd |only ottrpal-1.2.1/ottrpal/man/bookdown_to_embed_leanpub.Rd |only ottrpal-1.2.1/ottrpal/man/bookdown_to_leanpub.Rd |only ottrpal-1.2.1/ottrpal/man/convert_utube_link.Rd |only ottrpal-1.2.1/ottrpal/man/example_repo_cleanup.Rd |only ottrpal-1.2.1/ottrpal/man/example_repo_setup.Rd |only ottrpal-1.2.1/ottrpal/man/figures |only ottrpal-1.2.1/ottrpal/man/footnotes.Rd |only ottrpal-1.2.1/ottrpal/man/get_bookdown_spec.Rd |only ottrpal-1.2.1/ottrpal/man/leanpub_check.Rd |only ottrpal-1.2.1/ottrpal/man/remove_yaml_header.Rd |only ottrpal-1.2.1/ottrpal/man/replace_html.Rd |only ottrpal-1.2.1/ottrpal/man/set_up_leanpub.Rd |only ottrpal-1.2.1/ottrpal/man/simple_references.Rd |only ottrpal-1.2.1/ottrpal/vignettes/manuscript |only ottrpal-2.0.0/ottrpal/DESCRIPTION | 27 ottrpal-2.0.0/ottrpal/MD5 | 191 +++--- ottrpal-2.0.0/ottrpal/NAMESPACE | 66 +- ottrpal-2.0.0/ottrpal/NEWS.md | 9 ottrpal-2.0.0/ottrpal/R/auth.R | 286 +++++++--- ottrpal-2.0.0/ottrpal/R/book_txt.R |only ottrpal-2.0.0/ottrpal/R/borrow_chapter.R |only ottrpal-2.0.0/ottrpal/R/get_data.R |only ottrpal-2.0.0/ottrpal/R/github_handling.R |only ottrpal-2.0.0/ottrpal/R/google_slides.R |only ottrpal-2.0.0/ottrpal/R/leanpub.R |only ottrpal-2.0.0/ottrpal/R/notes_to_fig_alt.R | 33 - ottrpal-2.0.0/ottrpal/R/ottrfy.R |only ottrpal-2.0.0/ottrpal/R/quiz_formatting.R |only ottrpal-2.0.0/ottrpal/R/render_without_toc.R |only ottrpal-2.0.0/ottrpal/R/spell_check.R |only ottrpal-2.0.0/ottrpal/R/token_handlers.R |only ottrpal-2.0.0/ottrpal/R/url_check.R |only ottrpal-2.0.0/ottrpal/R/utils.R |only ottrpal-2.0.0/ottrpal/README.md | 88 --- ottrpal-2.0.0/ottrpal/build/vignette.rds |binary ottrpal-2.0.0/ottrpal/inst/doc/getting-started.html | 22 ottrpal-2.0.0/ottrpal/inst/extdata/_child_doc.Rmd |only ottrpal-2.0.0/ottrpal/inst/extdata/dictionary.txt |only ottrpal-2.0.0/ottrpal/inst/extdata/exclude_files.txt |only ottrpal-2.0.0/ottrpal/inst/extdata/ignore-urls.txt |only ottrpal-2.0.0/ottrpal/inst/extdata/parent_doc.Rmd |only ottrpal-2.0.0/ottrpal/inst/extdata/parent_doc.html |only ottrpal-2.0.0/ottrpal/inst/extdata/resources/other_chapters |only ottrpal-2.0.0/ottrpal/man/app_set_up.Rd |only ottrpal-2.0.0/ottrpal/man/auth_from_secret.Rd | 39 + ottrpal-2.0.0/ottrpal/man/authorize.Rd | 22 ottrpal-2.0.0/ottrpal/man/bad_quiz_path.Rd | 2 ottrpal-2.0.0/ottrpal/man/borrow_chapter.Rd |only ottrpal-2.0.0/ottrpal/man/cache_secrets_folder.Rd |only ottrpal-2.0.0/ottrpal/man/check_all_questions.Rd | 2 ottrpal-2.0.0/ottrpal/man/check_git_repo.Rd |only ottrpal-2.0.0/ottrpal/man/check_question.Rd | 2 ottrpal-2.0.0/ottrpal/man/check_quiz.Rd | 2 ottrpal-2.0.0/ottrpal/man/check_quiz_attributes.Rd | 2 ottrpal-2.0.0/ottrpal/man/check_quiz_dir.Rd |only ottrpal-2.0.0/ottrpal/man/check_quiz_question_attributes.Rd | 2 ottrpal-2.0.0/ottrpal/man/check_quizzes.Rd | 5 ottrpal-2.0.0/ottrpal/man/check_spelling.Rd |only ottrpal-2.0.0/ottrpal/man/check_urls.Rd |only ottrpal-2.0.0/ottrpal/man/clean_up.Rd |only ottrpal-2.0.0/ottrpal/man/convert_coursera_quizzes.Rd | 2 ottrpal-2.0.0/ottrpal/man/convert_quiz.Rd | 2 ottrpal-2.0.0/ottrpal/man/course_path.Rd |only ottrpal-2.0.0/ottrpal/man/course_to_book_txt.Rd |only ottrpal-2.0.0/ottrpal/man/coursera.Rd | 10 ottrpal-2.0.0/ottrpal/man/delete_creds.Rd |only ottrpal-2.0.0/ottrpal/man/encrypt_creds_path.Rd | 2 ottrpal-2.0.0/ottrpal/man/encrypt_creds_user_path.Rd | 2 ottrpal-2.0.0/ottrpal/man/extract_meta.Rd | 2 ottrpal-2.0.0/ottrpal/man/find_issue.Rd |only ottrpal-2.0.0/ottrpal/man/get_chapters.Rd | 12 ottrpal-2.0.0/ottrpal/man/get_github.Rd |only ottrpal-2.0.0/ottrpal/man/get_object_id_notes.Rd | 2 ottrpal-2.0.0/ottrpal/man/get_pages_url.Rd |only ottrpal-2.0.0/ottrpal/man/get_repo_info.Rd |only ottrpal-2.0.0/ottrpal/man/get_slide_id.Rd | 2 ottrpal-2.0.0/ottrpal/man/get_urls.Rd |only ottrpal-2.0.0/ottrpal/man/good_quiz_path.Rd | 9 ottrpal-2.0.0/ottrpal/man/gs_helpers.Rd | 2 ottrpal-2.0.0/ottrpal/man/gs_png_url.Rd | 2 ottrpal-2.0.0/ottrpal/man/key_encrypt_creds_path.Rd | 2 ottrpal-2.0.0/ottrpal/man/make_embed_markdown.Rd | 25 ottrpal-2.0.0/ottrpal/man/make_screenshots.Rd |only ottrpal-2.0.0/ottrpal/man/ottr_check.Rd |only ottrpal-2.0.0/ottrpal/man/ottrfy.Rd |only ottrpal-2.0.0/ottrpal/man/parse_q_tag.Rd | 2 ottrpal-2.0.0/ottrpal/man/parse_quiz.Rd | 2 ottrpal-2.0.0/ottrpal/man/parse_quiz_df.Rd | 2 ottrpal-2.0.0/ottrpal/man/pipe.Rd | 8 ottrpal-2.0.0/ottrpal/man/qrmd_files.Rd |only ottrpal-2.0.0/ottrpal/man/set_knitr_image_path.Rd | 13 ottrpal-2.0.0/ottrpal/man/setup_ottr_template.Rd |only ottrpal-2.0.0/ottrpal/man/supported_endpoints.Rd |only ottrpal-2.0.0/ottrpal/man/test_url.Rd |only ottrpal-2.0.0/ottrpal/man/website_to_embed_leanpub.Rd |only ottrpal-2.0.0/ottrpal/tests |only 127 files changed, 511 insertions(+), 392 deletions(-)
Title: Climate Services' Indicators Based on Sub-Seasonal to Decadal
Predictions
Description: Set of generalised tools for the flexible computation of climate
related indicators defined by the user. Each method represents a specific
mathematical approach which is combined with the possibility to select an
arbitrary time period to define the indicator. This enables a wide range of
possibilities to tailor the most suitable indicator for each particular climate
service application (agriculture, food security, energy, water management, ...).
This package is intended for sub-seasonal, seasonal and decadal climate
predictions, but its methods are also applicable to other time-scales,
provided the dimensional structure of the input is maintained. Additionally,
the outputs of the functions in this package are compatible with 'CSTools'.
This package is described in 'Pérez-Zanón et al. (2023)
<doi:10.1016/j.cliser.2023.100393>' and it was developed in the context of
'H2020 MED-GOLD' (776467) and 'S2S4E' (776787) projects. See 'Lledó et al. (2019)
<doi:10.1016/j.renene.2019.04.13 [...truncated...]
Author: Theertha Kariyathan [cre],
Victoria Agudetse [ctb],
Eva Rifa [ctb],
Nuria Perez-Zanon [aut] ,
Chou Chihchung [aut],
Llorenc Lledo [aut],
Gonzalez-Reviriego Nube [ctb],
Marcos Rauel [ctb],
Palma Lluis [ctb],
An-Chi Ho [ctb],
BSC-CNS [cph]
Maintainer: Theertha Kariyathan <theertha.kariyathan@bsc.es>
Diff between CSIndicators versions 1.1.1 dated 2024-01-24 and 1.1.2 dated 2025-03-31
DESCRIPTION | 14 +++++++----- MD5 | 38 +++++++++++++++++------------------ NAMESPACE | 1 NEWS.md | 19 +++++++++++++++++ R/AccumulationExceedingThreshold.R | 10 +++++---- R/MergeRefToExp.R | 9 +++++--- R/PeriodAccumulation.R | 15 ++++++++----- R/PeriodMax.R | 14 +++++++----- R/PeriodMean.R | 9 +++++--- R/PeriodMin.R | 11 ++++++---- R/PeriodPET.R | 8 +++++-- R/PeriodStandardization.R | 27 +++++++++++++++--------- R/PeriodVariance.R | 8 ++++--- R/SelectPeriodOnData.R | 2 - R/SelectPeriodOnDates.R | 2 - R/TotalSpellTimeExceedingThreshold.R | 10 +++++---- R/TotalTimeExceedingThreshold.R | 10 +++++---- build/partial.rdb |binary inst/CITATION | 2 - man/CST_PeriodStandardization.Rd | 8 +++---- 20 files changed, 136 insertions(+), 81 deletions(-)
Title: Convert Country Names and Country Codes
Description: Standardize country names, convert them into one of 40
different coding schemes, convert between coding schemes, and assign
region descriptors.
Author: Vincent Arel-Bundock [aut, cre]
,
CJ Yetman [ctb] ,
Nils Enevoldsen [ctb] ,
Etienne Bacher [ctb] ,
Samuel Meichtry [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between countrycode versions 1.6.0 dated 2024-03-22 and 1.6.1 dated 2025-03-31
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 5 +++++ R/codelist.R | 4 ++-- R/countrycode.R | 8 +++++++- data/codelist.rda |binary data/codelist_panel.rda |binary man/codelist.Rd | 4 ++-- 8 files changed, 27 insertions(+), 16 deletions(-)
Title: Chromatographic File Converter
Description: Reads chromatograms from binary formats into R objects. Currently supports
conversion of 'Agilent ChemStation', 'Agilent MassHunter', 'Shimadzu LabSolutions',
'ThermoRaw', and 'Varian Workstation' files as well as various text-based formats.
In addition to its internal parsers, chromConverter contains bindings to parsers in
external libraries, such as 'Aston' <https://github.com/bovee/aston>,
'Entab' <https://github.com/bovee/entab>, 'rainbow' <https://rainbow-api.readthedocs.io/>,
and 'ThermoRawFileParser' <https://github.com/compomics/ThermoRawFileParser>.
Author: Ethan Bass [aut, cre] ,
James Dillon [ctb, cph] ,
Evan Shi [ctb, cph]
Maintainer: Ethan Bass <ethanbass@gmail.com>
Diff between chromConverter versions 0.2.1 dated 2022-07-11 and 0.7.5 dated 2025-03-31
chromConverter-0.2.1/chromConverter/R/parsers.R |only chromConverter-0.2.1/chromConverter/man/attach_metadata.Rd |only chromConverter-0.2.1/chromConverter/man/configure_aston.Rd |only chromConverter-0.2.1/chromConverter/tests/testthat/testdata/DAD1.CSV |only chromConverter-0.7.5/chromConverter/DESCRIPTION | 58 chromConverter-0.7.5/chromConverter/MD5 | 115 - chromConverter-0.7.5/chromConverter/NAMESPACE | 42 chromConverter-0.7.5/chromConverter/NEWS.md | 262 +++ chromConverter-0.7.5/chromConverter/R/attach_metadata.R | 855 ++++++++-- chromConverter-0.7.5/chromConverter/R/call_aston.R |only chromConverter-0.7.5/chromConverter/R/call_entab.R |only chromConverter-0.7.5/chromConverter/R/call_openchrom.R | 283 ++- chromConverter-0.7.5/chromConverter/R/call_rainbow.R |only chromConverter-0.7.5/chromConverter/R/olefile_utilities.R |only chromConverter-0.7.5/chromConverter/R/read_agilent_d.R |only chromConverter-0.7.5/chromConverter/R/read_asm.R |only chromConverter-0.7.5/chromConverter/R/read_cdf.R |only chromConverter-0.7.5/chromConverter/R/read_chemstation_ch.R |only chromConverter-0.7.5/chromConverter/R/read_chemstation_csv.R |only chromConverter-0.7.5/chromConverter/R/read_chemstation_ms.R |only chromConverter-0.7.5/chromConverter/R/read_chemstation_report.R |only chromConverter-0.7.5/chromConverter/R/read_chemstation_uv.R |only chromConverter-0.7.5/chromConverter/R/read_chromeleon.R |only chromConverter-0.7.5/chromConverter/R/read_chroms.R | 474 ++++- chromConverter-0.7.5/chromConverter/R/read_mdf.R |only chromConverter-0.7.5/chromConverter/R/read_mzml.R |only chromConverter-0.7.5/chromConverter/R/read_peaklist.R |only chromConverter-0.7.5/chromConverter/R/read_shimadzu_ascii.R |only chromConverter-0.7.5/chromConverter/R/read_shimadzu_gcd.R |only chromConverter-0.7.5/chromConverter/R/read_shimadzu_lcd.R |only chromConverter-0.7.5/chromConverter/R/read_shimadzu_peaktable.R |only chromConverter-0.7.5/chromConverter/R/read_shimadzu_qgd.R |only chromConverter-0.7.5/chromConverter/R/read_thermoraw.R | 163 - chromConverter-0.7.5/chromConverter/R/read_varian_peaklist.R |only chromConverter-0.7.5/chromConverter/R/read_varian_sms.R |only chromConverter-0.7.5/chromConverter/R/read_waters_arw.R |only chromConverter-0.7.5/chromConverter/R/read_waters_raw.R |only chromConverter-0.7.5/chromConverter/R/reshape_chroms.R |only chromConverter-0.7.5/chromConverter/R/utils.R | 422 ++++ chromConverter-0.7.5/chromConverter/R/write_andi_ms.R |only chromConverter-0.7.5/chromConverter/R/write_chroms.R |only chromConverter-0.7.5/chromConverter/R/write_mzml.R |only chromConverter-0.7.5/chromConverter/R/zzz.R | 17 chromConverter-0.7.5/chromConverter/README.md | 147 + chromConverter-0.7.5/chromConverter/build/partial.rdb |binary chromConverter-0.7.5/chromConverter/inst/CITATION | 19 chromConverter-0.7.5/chromConverter/inst/shell/path_to_openchrom_commandline.txt | 2 chromConverter-0.7.5/chromConverter/man/call_entab.Rd | 36 chromConverter-0.7.5/chromConverter/man/call_openchrom.Rd | 85 chromConverter-0.7.5/chromConverter/man/call_rainbow.Rd |only chromConverter-0.7.5/chromConverter/man/configure_openchrom.Rd |only chromConverter-0.7.5/chromConverter/man/configure_python_environment.Rd |only chromConverter-0.7.5/chromConverter/man/extract_metadata.Rd |only chromConverter-0.7.5/chromConverter/man/read_agilent_d.Rd |only chromConverter-0.7.5/chromConverter/man/read_agilent_dx.Rd |only chromConverter-0.7.5/chromConverter/man/read_asm.Rd |only chromConverter-0.7.5/chromConverter/man/read_cdf.Rd |only chromConverter-0.7.5/chromConverter/man/read_chemstation_ch.Rd |only chromConverter-0.7.5/chromConverter/man/read_chemstation_csv.Rd | 34 chromConverter-0.7.5/chromConverter/man/read_chemstation_ms.Rd |only chromConverter-0.7.5/chromConverter/man/read_chemstation_reports.Rd |only chromConverter-0.7.5/chromConverter/man/read_chemstation_uv.Rd |only chromConverter-0.7.5/chromConverter/man/read_chromeleon.Rd | 31 chromConverter-0.7.5/chromConverter/man/read_chroms.Rd | 128 + chromConverter-0.7.5/chromConverter/man/read_mdf.Rd |only chromConverter-0.7.5/chromConverter/man/read_mzml.Rd | 42 chromConverter-0.7.5/chromConverter/man/read_peaklist.Rd |only chromConverter-0.7.5/chromConverter/man/read_shimadzu.Rd | 74 chromConverter-0.7.5/chromConverter/man/read_shimadzu_gcd.Rd |only chromConverter-0.7.5/chromConverter/man/read_shimadzu_lcd.Rd |only chromConverter-0.7.5/chromConverter/man/read_shimadzu_qgd.Rd |only chromConverter-0.7.5/chromConverter/man/read_sz_lcd_2d.Rd |only chromConverter-0.7.5/chromConverter/man/read_sz_lcd_3d.Rd |only chromConverter-0.7.5/chromConverter/man/read_thermoraw.Rd | 39 chromConverter-0.7.5/chromConverter/man/read_varian_peaklist.Rd |only chromConverter-0.7.5/chromConverter/man/read_varian_sms.Rd |only chromConverter-0.7.5/chromConverter/man/read_waters_arw.Rd | 31 chromConverter-0.7.5/chromConverter/man/read_waters_raw.Rd |only chromConverter-0.7.5/chromConverter/man/sp_converter.Rd | 35 chromConverter-0.7.5/chromConverter/man/uv_converter.Rd | 34 chromConverter-0.7.5/chromConverter/man/write_andi_chrom.Rd |only chromConverter-0.7.5/chromConverter/man/write_chroms.Rd |only chromConverter-0.7.5/chromConverter/man/write_mzml.Rd |only chromConverter-0.7.5/chromConverter/tests/testthat/helpers.R | 32 chromConverter-0.7.5/chromConverter/tests/testthat/test-extra.R |only chromConverter-0.7.5/chromConverter/tests/testthat/test-read_chroms.R | 334 +++ chromConverter-0.7.5/chromConverter/tests/testthat/test_utils.R |only chromConverter-0.7.5/chromConverter/tests/testthat/testdata/RUTIN2.D |only chromConverter-0.7.5/chromConverter/tests/testthat/testdata/chemstation_130.ch |only chromConverter-0.7.5/chromConverter/tests/testthat/testdata/dad1.csv |only 90 files changed, 3065 insertions(+), 729 deletions(-)
More information about chromConverter at CRAN
Permanent link
Title: Biological Analysis and Visualization of Weather Radar Data
Description: Extract, visualize and summarize aerial movements of birds and
insects from weather radar data. See Dokter, A. M. et al. (2018)
"bioRad: biological analysis and visualization of weather radar data" <doi:10.1111/ecog.04028>
for a software paper describing package and methodologies.
Author: Adriaan M. Dokter [aut, cre] ,
Peter Desmet [aut] ,
Bart Kranstauber [aut] ,
Cecilia Nilsson [aut] ,
Stijn Van Hoey [aut] ,
Bart Hoekstra [ctb] ,
Pieter Huybrechts [ctb] ,
Hidde Leijnse [ctb] ,
Nicolas Noe [ctb] ,
Raphael Nussbaumer [ctb] ,
Jurriaan [...truncated...]
Maintainer: Adriaan M. Dokter <biorad@cornell.edu>
Diff between bioRad versions 0.8.1 dated 2024-07-30 and 0.9.0 dated 2025-03-31
DESCRIPTION | 8 MD5 | 84 ++- NAMESPACE | 6 NEWS.md | 40 + R/apply_mistnet.R | 10 R/as.vp.R |only R/as.vpts.R | 63 ++ R/calculate_param.R | 26 - R/calculate_vp.R | 18 R/clean_mixture.R |only R/filter_precip.R |only R/filter_vpts.R | 5 R/integrate_to_ppi.R | 19 R/map.R | 93 ++-- R/nexrad_odim.R | 2 R/nyquist_velocity.R | 1 R/plot.vpi.R | 10 R/read_vpfiles.R | 5 R/regularize_vpts.R | 17 R/utils.R | 17 README.md | 19 build/partial.rdb |binary build/vignette.rds |binary data/example_vp.rda |binary inst/doc/bioRad.html | 21 inst/doc/rad_aero_22.R | 782 +++++++++++++++++----------------- inst/doc/rad_aero_22.Rmd | 2 inst/doc/rad_aero_22.html | 445 +++++++++---------- inst/doc/range_correction.html | 124 ++--- man/apply_mistnet.Rd | 10 man/as.vp.Rd |only man/calculate_param.Rd | 23 - man/calculate_vp.Rd | 2 man/clean_mixture.Rd |only man/filter_precip.Rd |only man/filter_vpts.Rd | 8 man/map.Rd | 5 man/nexrad_to_odim.Rd | 2 man/nyquist_velocity.Rd | 1 man/regularize_vpts.Rd | 17 tests/testthat/test-as.vp.R |only tests/testthat/test-as.vpts.R | 33 + tests/testthat/test-calculate_param.R | 12 tests/testthat/test-clean_mixture.R |only tests/testthat/test-list_vpts_aloft.R | 6 tests/testthat/test-read_vpts.R | 1 vignettes/rad_aero_22.Rmd | 2 47 files changed, 1074 insertions(+), 865 deletions(-)
Title: 'SAS' Interface
Description: Provides a 'SAS' interface, through
'SASPy'(<https://sassoftware.github.io/saspy/>) and
'reticulate'(<https://rstudio.github.io/reticulate/>). This package
helps you create 'SAS' sessions, execute 'SAS' code in remote 'SAS'
servers, retrieve execution results and log, and exchange datasets
between 'SAS' and 'R'. It also helps you to install 'SASPy' and
create a configuration file for the connection. Please review the
'SASPy' license file as instructed so that you comply with its
separate and independent license.
Author: Liming Li [aut, cre],
Daniel Sabanes Bove [aut],
Isaac Gravestock [aut],
F. Hoffmann-La Roche AG [cph, fnd],
AstraZeneca plc [cph, fnd]
Maintainer: Liming Li <liming.li1@astrazeneca.com>
Diff between sasr versions 0.1.4 dated 2025-02-26 and 0.1.5 dated 2025-03-31
DESCRIPTION | 18 ++++++++++-------- MD5 | 8 ++++---- NEWS.md | 4 ++++ man/sasr-package.Rd | 3 ++- tests/testthat/test-rmarkdown.R | 1 + 5 files changed, 21 insertions(+), 13 deletions(-)
Title: R Interface to the 'Protocol Buffers' 'API' (Version 2 or 3)
Description: Protocol Buffers are a way of encoding structured data in an
efficient yet extensible format. Google uses Protocol Buffers for almost all
of its internal 'RPC' protocols and file formats. Additional documentation
is available in two included vignettes one of which corresponds to our 'JSS'
paper (2016, <doi:10.18637/jss.v071.i02>. A sufficiently recent version of
'Protocol Buffers' library is required; currently version 3.3.0 from 2017
is the stated minimum.
Author: Romain Francois [aut] ,
Dirk Eddelbuettel [aut, cre] ,
Murray Stokely [aut] ,
Jeroen Ooms [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RProtoBuf versions 0.4.23 dated 2025-01-14 and 0.4.24 dated 2025-03-31
ChangeLog | 19 +++++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- R/00classes.R | 2 +- build/vignette.rds |binary configure | 18 +++++++++--------- configure.ac | 2 +- inst/NEWS.Rd | 12 ++++++++++-- inst/doc/RProtoBuf-intro.pdf |binary inst/doc/RProtoBuf-paper.pdf |binary inst/doc/RProtoBuf-quickref.pdf |binary src/init.c | 2 ++ src/mutators.cpp | 3 +-- src/rprotobuf.cpp | 4 ++-- src/rprotobuf.h | 28 ++++++++++++---------------- 15 files changed, 75 insertions(+), 51 deletions(-)
Title: R Interface to 'Bloomberg'
Description: An R Interface to 'Bloomberg' is provided via the 'Blp API'.
Author: Whit Armstrong [aut],
Dirk Eddelbuettel [aut, cre] ,
John Laing [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between Rblpapi versions 0.3.15 dated 2024-09-18 and 0.3.16 dated 2025-03-31
ChangeLog | 109 +++++++++++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 13 +++-- MD5 | 60 +++++++++++++------------- R/RcppExports.R | 13 ++++- R/blpConnect.R | 7 ++- R/init.R | 45 ++++++++++---------- build/vignette.rds |binary configure | 47 +++++++++++---------- inst/NEWS.Rd | 12 +++++ man/blpAuthenticate.Rd | 12 +---- man/blpConnect.Rd | 6 ++ man/getTicks.Rd | 2 man/haveBlp.Rd |only src/Makevars.in | 15 ++++-- src/Makevars.no_blp |only src/Makevars.win | 5 -- src/RcppExports.cpp | 24 ++++++++-- src/authenticate.cpp | 21 ++++++--- src/bdh.cpp | 24 +++++++--- src/bdp.cpp | 41 +++++++++++++----- src/bds.cpp | 31 +++++++++---- src/beqs.cpp | 37 ++++++++-------- src/blpConnect.cpp | 21 +++++++-- src/blpVersion.cpp | 30 ++++++++++++- src/blpapi_utils.cpp | 50 ++++++++++++---------- src/bsrch.cpp | 29 ++++++------- src/fieldsearch.cpp | 14 ++++-- src/getBars.cpp | 13 ++++- src/getFieldInfo.cpp | 44 ++++++++++--------- src/getTicks.cpp | 17 ++++--- src/lookup.cpp | 18 ++++---- src/subscribe.cpp | 22 +++++---- 32 files changed, 531 insertions(+), 251 deletions(-)
Title: Decision Trees with Structural Equation Models Fit in 'Mplus'
Description: Uses recursive partitioning to create homogeneous subgroups based on structural equation models
fit in 'Mplus', a stand-alone program developed by Muthen and Muthen.
Author: Sarfaraz Serang [aut, cre],
Ross Jacobucci [aut],
Kevin J. Grimm [ctb],
Gabriela Stegmann [ctb],
Andreas M. Brandmaier [ctb]
Maintainer: Sarfaraz Serang <sserang@mailbox.sc.edu>
Diff between MplusTrees versions 0.2.2 dated 2022-10-11 and 0.2.3 dated 2025-03-31
DESCRIPTION | 35 ++++++++++++++++++++++++++--------- MD5 | 2 +- 2 files changed, 27 insertions(+), 10 deletions(-)
Title: Sparsed Sliced Inverse Regression via Lasso
Description: Estimate the sufficient dimension reduction space using sparsed sliced inverse regression via Lasso (Lasso-SIR) introduced in Lin, Zhao, and Liu (2019) <doi:10.1080/01621459.2018.1520115>. The Lasso-SIR is consistent and achieve the optimal convergence rate under certain sparsity conditions for the multiple index models.
Author: Zhigen Zhao [aut, cre],
Qian Lin [aut],
Jun Liu [aut]
Maintainer: Zhigen Zhao <zhigen.zhao@gmail.com>
Diff between LassoSIR versions 0.1.1 dated 2017-12-06 and 1.0 dated 2025-03-31
DESCRIPTION | 24 ++++++++++--- MD5 | 12 ++++-- R/LassoSIR.R | 81 +++++++++++++++++++++++++++-------------------- R/predict_Lasso_SIR.R |only build/partial.rdb |binary man/LassoSIR-package.Rd | 14 ++++---- man/LassoSIR.Rd | 40 ++++++++++++----------- man/predict_Lasso_SIR.Rd |only 8 files changed, 101 insertions(+), 70 deletions(-)
Title: Model-Based Clustering for Functional Data with Covariates
Description: Routines for model-based functional cluster analysis for functional data with optional covariates. The idea is to cluster functional subjects (often called functional objects) into homogenous groups by using spline smoothers (for functional data) together with scalar covariates. The spline coefficients and the covariates are modelled as a multivariate Gaussian mixture model, where the number of mixtures corresponds to the number of clusters. The parameters of the model are estimated by maximizing the observed mixture likelihood via an EM algorithm (Arnqvist and Sjöstedt de Luna, 2019) <doi:10.48550/arXiv.1904.10265>. The clustering method is used to analyze annual lake sediment from lake Kassjön (Northern Sweden) which cover more than 6400 years and can be seen as historical records of weather and climate.
Author: Natalya Pya [aut, cre],
Per Arnqvist [aut],
Sara Sjoestedt de Luna [aut]
Maintainer: Natalya Pya <nat.pya@gmail.com>
Diff between fdaMocca versions 0.1-1 dated 2022-07-21 and 0.1-2 dated 2025-03-31
DESCRIPTION | 24 ++++++++++++++---------- MD5 | 2 +- 2 files changed, 15 insertions(+), 11 deletions(-)
Title: Fast and Scalable Single Cell Differential Expression Analysis
using Mixed-Effects Models
Description: A fast and scalable linear mixed-effects model (LMM) estimation algorithm
for analysis of single-cell differential expression. The algorithm uses
summary-level statistics and requires less computer memory to fit the LMM.
Author: Changjiang Xu [aut, cre],
Gary Bader [aut]
Maintainer: Changjiang Xu <changjiang.xu@utoronto.ca>
Diff between FLASHMM versions 1.1.0 dated 2025-03-11 and 1.2.0 dated 2025-03-31
DESCRIPTION | 9 MD5 | 22 NEWS.md | 6 R/lmm.R | 64 +- R/lmmfit.R | 17 README.md | 39 - inst/doc/FLASHMM-vignette.R | 223 +++----- inst/doc/FLASHMM-vignette.Rmd | 355 +++++-------- inst/doc/FLASHMM-vignette.html | 1114 +++++++++++++++++++++-------------------- man/lmm.Rd | 6 man/lmmfit.Rd | 4 vignettes/FLASHMM-vignette.Rmd | 355 +++++-------- 12 files changed, 1091 insertions(+), 1123 deletions(-)
Title: Bayesian Modeling of Spatio-Temporal Data with R
Description: Fits, validates and compares a number of Bayesian models for
spatial and space time point referenced and areal unit data. Model fitting
is done using several packages: 'rstan', 'INLA', 'spBayes', 'spTimer',
'spTDyn', 'CARBayes' and 'CARBayesST'. Model comparison is performed using
the DIC and WAIC, and K-fold cross-validation where the user is free
to select their own subset of data rows for validation. Sahu (2022)
<doi:10.1201/9780429318443> describes the methods in detail.
Author: Sujit K. Sahu [aut, cre] ,
Duncan P. Lee [aut],
K. Shuvo Bakar [aut]
Maintainer: Sujit K. Sahu <S.K.Sahu@soton.ac.uk>
Diff between bmstdr versions 0.7.9 dated 2023-12-18 and 0.8.2 dated 2025-03-31
DESCRIPTION | 8 MD5 | 37 NAMESPACE | 1 R/Bspatial.R | 2 R/Bsptime.R | 8 R/methods.R | 25 build/partial.rdb |binary build/vignette.rds |binary inst/doc/vigverysmall.R | 308 ++--- inst/doc/vigverysmall.html | 1354 ++++++++++++++++++------- inst/stan/gp_marginal.stan | 16 inst/stan/ind_gpp_marginal.stan | 26 inst/stan/normal.stan | 2 man/Bspatial.Rd | 2 man/Bsptime.Rd | 8 man/resid.bmstdr.Rd |only src/stanExports_gp_marginal.h | 1426 ++++++++++++-------------- src/stanExports_ind_gpp_marginal.h | 1958 +++++++++++++++++-------------------- src/stanExports_normal.h | 639 +++++------- src/stanExports_spatial_model.h | 1082 +++++++++----------- 20 files changed, 3606 insertions(+), 3296 deletions(-)
Title: Tools for Wikidata and Wikipedia
Description: A set of wrappers intended to check, read and download information from the Wikimedia sources. It is specifically created to work with names of celebrities, in which case their information and statistics can be downloaded. Additionally, it also builds links and snippets to use in combination with the function gallery() in netCoin package.
Author: Modesto Escobar [aut, cph, cre]
,
Angel Zazo [aut],
Carlos Prieto [aut] ,
David Barrios [aut],
Cristina Calvo [aut]
Maintainer: Modesto Escobar <modesto@usal.es>
Diff between wikiTools versions 1.2.7 dated 2024-07-27 and 1.2.8 dated 2025-03-31
DESCRIPTION | 10 - MD5 | 18 +- R/wiki_utils.R | 74 ++++----- inst/doc/wiki_utils.R | 18 +- inst/doc/wiki_utils.Rmd | 2 inst/doc/wiki_utils.html | 375 ++++------------------------------------------- man/v_AutoSuggest.Rd | 2 man/v_GetRecord.Rd | 2 man/v_Search.Rd | 2 vignettes/wiki_utils.Rmd | 2 10 files changed, 96 insertions(+), 409 deletions(-)
Title: Data Collection from the Central Bank of Brazil
Description: Provides tools to facilitate the access and processing of data
from the Central Bank of Brazil API. The package allows users
to retrieve economic and financial data, transforming them into usable
tabular formats for further analysis. The data is obtained from the
Central Bank of Brazil API: <https://api.bcb.gov.br/dados/serie/bcdata.sgs.{series_code}/dados?formato=json&dataInicial={start_date}&dataFinal={end_date}>.
Author: Paulo Icaro [aut],
Lissandro Sousa [cre, aut],
Francisco Gildemir Ferreira da Silva [ths, aut]
Maintainer: Lissandro Sousa <lisandrosousa54@gmail.com>
Diff between BacenAPI versions 0.1.1 dated 2025-03-17 and 0.2.0 dated 2025-03-31
DESCRIPTION | 7 ++++--- MD5 | 9 +++++++-- NAMESPACE | 2 ++ R/bacen_search.R |only R/dataset.R |only data |only man/bacen_search.Rd |only man/dataset.Rd |only 8 files changed, 13 insertions(+), 5 deletions(-)
Title: Fast and Vectorized Base 64 Engine
Description: Provides a fast, lightweight, and vectorized base 64 engine
to encode and decode character and raw vectors as well as files stored
on disk. Common base 64 alphabets are supported out of the box
including the standard, URL-safe, bcrypt, crypt, 'BinHex', and
IMAP-modified UTF-7 alphabets. Custom engines can be created to
support unique base 64 encoding and decoding needs.
Author: Josiah Parry [aut, cre] ,
Etienne Bacher [ctb]
Maintainer: Josiah Parry <josiah.parry@gmail.com>
Diff between b64 versions 0.1.3 dated 2024-09-26 and 0.1.4 dated 2025-03-31
b64-0.1.3/b64/src/Makevars |only b64-0.1.3/b64/src/Makevars.win |only b64-0.1.4/b64/DESCRIPTION | 13 +++++---- b64-0.1.4/b64/MD5 | 29 ++++++++++---------- b64-0.1.4/b64/NEWS.md | 3 +- b64-0.1.4/b64/R/extendr-wrappers.R | 1 b64-0.1.4/b64/README.md | 42 ++++++++++++++---------------- b64-0.1.4/b64/configure | 2 - b64-0.1.4/b64/configure.win | 2 - b64-0.1.4/b64/man/b64-package.Rd | 12 +++++++- b64-0.1.4/b64/src/Makevars.in |only b64-0.1.4/b64/src/Makevars.win.in |only b64-0.1.4/b64/src/rust/Cargo.lock | 34 ++++++++++++++---------- b64-0.1.4/b64/src/rust/Cargo.toml | 5 ++- b64-0.1.4/b64/src/rust/vendor-config.toml | 4 ++ b64-0.1.4/b64/src/rust/vendor.tar.xz |binary b64-0.1.4/b64/tools/config.R |only b64-0.1.4/b64/tools/msrv.R | 4 +- 18 files changed, 86 insertions(+), 65 deletions(-)
Title: Multivariate Multiscale Spatial Analysis
Description: Tools for the multiscale spatial analysis of multivariate data.
Several methods are based on the use of a spatial weighting matrix and its
eigenvector decomposition (Moran's Eigenvectors Maps, MEM).
Several approaches are described in the review Dray et al (2012)
<doi:10.1890/11-1183.1>.
Author: Stephane Dray [aut] ,
David Bauman [ctb],
Guillaume Blanchet [ctb],
Daniel Borcard [ctb],
Sylvie Clappe [ctb],
Guillaume Guenard [ctb] ,
Thibaut Jombart [ctb],
Guillaume Larocque [ctb],
Pierre Legendre [ctb] ,
Naima Madi [ctb],
Helene H Wagner [ctb], [...truncated...]
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between adespatial versions 0.3-26 dated 2025-03-21 and 0.3-27 dated 2025-03-31
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- inst/doc/tutorial.html | 4 ++-- src/constr.hclust.c | 1 + src/constr.hclust.h | 4 ++-- 5 files changed, 12 insertions(+), 11 deletions(-)
Title: Compare Human Performance to Sampling Algorithms
Description: Understand human performance from the perspective of sampling, both looking at how people generate samples and how people use the samples they have generated. A longer overview and other resources can be found at <https://sampling.warwick.ac.uk>.
Author: Lucas Castillo [aut, cre, cph]
,
Yun-Xiao Li [aut, cph] ,
Adam N Sanborn [aut, cph] ,
European Research Council [fnd]
Maintainer: Lucas Castillo <lucas.castillo-marti@warwick.ac.uk>
Diff between samplr versions 1.0.1 dated 2024-08-19 and 1.1.0 dated 2025-03-31
DESCRIPTION | 10 ++-- MD5 | 52 ++++++++++++------------ NEWS.md | 11 +++++ R/ABSClass.R | 6 +- R/Z_identities.R | 62 ++++++++++++++++++++++++----- R/calc_functions.R | 26 +++++++++--- build/partial.rdb |binary inst/REFERENCES.bib | 20 ++++++++- inst/doc/abs-simulations.Rmd | 2 inst/doc/abs-simulations.html | 66 +++++++++++++++++++++++-------- inst/doc/custom-density-functions.html | 20 ++++----- inst/doc/how-to-sample.html | 6 +- inst/doc/multivariate-mixtures.html | 10 ++-- inst/doc/supported-distributions.html | 6 +- inst/doc/time-comparisons.html | 26 ++++++------ man/Bayesian_Sampler.Rd | 22 +++++++++- man/Mean_Variance.Rd | 6 ++ man/Z_identities.Rd | 3 + man/Zhu23ABS.Rd | 5 +- man/calc_PSD.Rd | 8 +++ man/calc_all.Rd | 11 ++++- man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary man/samplr-package.Rd | 2 tests/testthat/test-Z_identities.R | 58 ++++++++++++++++++++++++++- tests/testthat/test-calc_functions.R | 16 +++++-- vignettes/abs-simulations.Rmd | 2 27 files changed, 340 insertions(+), 116 deletions(-)
Title: Plot FTIR Spectra
Description: The goal of 'PlotFTIR' is to easily and quickly kick-start the production of journal-quality Fourier Transform Infra-Red (FTIR) spectral plots in R using 'ggplot2'. The produced plots can be published directly or further modified by 'ggplot2' functions.
L'objectif de 'PlotFTIR' est de démarrer facilement et rapidement la production des tracés spectraux de spectroscopie infrarouge à transformée de Fourier (IRTF) de qualité journal dans R à l'aide de 'ggplot2'. Les tracés produits peuvent être publiés directement ou modifiés davantage par les fonctions 'ggplot2'.
Author: Philip Bulsink [aut, cre] ,
Ulrich Makanda [trl] ,
His Majesty the King in Right of Canada, as represented by the Minister
of Natural Resources [cph]
Maintainer: Philip Bulsink <philip.bulsink@nrcan-rncan.gc.ca>
Diff between PlotFTIR versions 1.1.0 dated 2025-02-05 and 1.2.0 dated 2025-03-31
PlotFTIR-1.1.0/PlotFTIR/vignettes/peak_fitting.Rbak |only PlotFTIR-1.2.0/PlotFTIR/DESCRIPTION | 8 PlotFTIR-1.2.0/PlotFTIR/MD5 | 41 PlotFTIR-1.2.0/PlotFTIR/NAMESPACE | 1 PlotFTIR-1.2.0/PlotFTIR/NEWS.md | 5 PlotFTIR-1.2.0/PlotFTIR/R/io.R | 376 ++- PlotFTIR-1.2.0/PlotFTIR/R/manipulations.R | 304 +- PlotFTIR-1.2.0/PlotFTIR/R/maths.R | 440 ++- PlotFTIR-1.2.0/PlotFTIR/R/plot_ftir.R | 117 PlotFTIR-1.2.0/PlotFTIR/R/utils.R | 104 PlotFTIR-1.2.0/PlotFTIR/R/zzz.R | 5 PlotFTIR-1.2.0/PlotFTIR/README.md | 26 PlotFTIR-1.2.0/PlotFTIR/build/vignette.rds |binary PlotFTIR-1.2.0/PlotFTIR/inst/doc/plotting_ftir_spectra.html | 5 PlotFTIR-1.2.0/PlotFTIR/man/check_ftir_data.Rd | 32 PlotFTIR-1.2.0/PlotFTIR/man/intensity_type.Rd | 3 PlotFTIR-1.2.0/PlotFTIR/tests/testthat.R | 24 PlotFTIR-1.2.0/PlotFTIR/tests/testthat/test-io.R | 449 +++ PlotFTIR-1.2.0/PlotFTIR/tests/testthat/test-manipulations.R | 206 + PlotFTIR-1.2.0/PlotFTIR/tests/testthat/test-maths.R | 1441 +++++++++--- PlotFTIR-1.2.0/PlotFTIR/tests/testthat/test-plot_ftir.R | 54 PlotFTIR-1.2.0/PlotFTIR/tests/testthat/test-utils.R | 14 22 files changed, 2907 insertions(+), 748 deletions(-)
Title: R Wrapper for 'pikchr' (PIC) Diagram Language
Description: An 'R' interface to 'pikchr' (<https://pikchr.org>, pronounced “picture”), a 'PIC'-like markup language for creating diagrams within technical documentation. Originally developed by Brian Kernighan, 'PIC' has been adapted into 'pikchr' by D. Richard Hipp, the creator of 'SQLite'. 'pikchr' is designed to be embedded in fenced code blocks of Markdown or other documentation markup languages, making it ideal for generating diagrams in text-based formats. This package allows R users to seamlessly integrate the descriptive syntax of 'pikchr' for diagram creation directly within the 'R' environment.
Author: Andre Leite [aut, cre],
Hugo Vaconcelos [aut],
Richard Hipp [ctb],
Brian Kernighan [ctb]
Maintainer: Andre Leite <leite@castlab.org>
Diff between pikchr versions 1.0 dated 2024-12-02 and 1.0.1 dated 2025-03-31
DESCRIPTION | 8 MD5 | 10 NEWS.md | 4 inst/doc/Examples.html | 43 inst/doc/userman.html | 109 +- src/pikchr.c | 2320 ++++++++++++++++++++++++++----------------------- 6 files changed, 1345 insertions(+), 1149 deletions(-)
Title: Geocoding Made Easy
Description: An intuitive interface for getting data from geocoding services.
Author: Jesse Cambon [aut, cre] ,
Diego Hernangomez [aut] ,
Christopher Belanger [aut] ,
Daniel Possenriede [aut] ,
Otto Hansen [ctb]
Maintainer: Jesse Cambon <jesse.cambon@gmail.com>
Diff between tidygeocoder versions 1.0.5 dated 2021-11-02 and 1.0.6 dated 2025-03-31
tidygeocoder-1.0.5/tidygeocoder/R/geo_methods.R |only tidygeocoder-1.0.5/tidygeocoder/man/geo_census.Rd |only tidygeocoder-1.0.6/tidygeocoder/DESCRIPTION | 26 tidygeocoder-1.0.6/tidygeocoder/MD5 | 99 tidygeocoder-1.0.6/tidygeocoder/NAMESPACE | 13 tidygeocoder-1.0.6/tidygeocoder/NEWS.md | 25 tidygeocoder-1.0.6/tidygeocoder/R/api_url.R | 92 tidygeocoder-1.0.6/tidygeocoder/R/batch_geocoding.R | 962 ++++---- tidygeocoder-1.0.6/tidygeocoder/R/data.R | 63 tidygeocoder-1.0.6/tidygeocoder/R/documentation.R | 187 - tidygeocoder-1.0.6/tidygeocoder/R/geo.R | 802 +++--- tidygeocoder-1.0.6/tidygeocoder/R/geocode.R | 222 + tidygeocoder-1.0.6/tidygeocoder/R/geocode_combine.R | 521 ++-- tidygeocoder-1.0.6/tidygeocoder/R/global_variables.R | 31 tidygeocoder-1.0.6/tidygeocoder/R/input_handling.R | 96 tidygeocoder-1.0.6/tidygeocoder/R/query_factory.R | 232 +- tidygeocoder-1.0.6/tidygeocoder/R/results_processing.R | 342 +- tidygeocoder-1.0.6/tidygeocoder/R/reverse_batch_geocoding.R | 736 +++--- tidygeocoder-1.0.6/tidygeocoder/R/reverse_geo.R | 611 ++--- tidygeocoder-1.0.6/tidygeocoder/R/reverse_geocode.R | 161 - tidygeocoder-1.0.6/tidygeocoder/R/tidygeocoder.R | 2 tidygeocoder-1.0.6/tidygeocoder/R/utils.R | 346 +-- tidygeocoder-1.0.6/tidygeocoder/R/zzz.R | 4 tidygeocoder-1.0.6/tidygeocoder/README.md | 107 tidygeocoder-1.0.6/tidygeocoder/build/vignette.rds |binary tidygeocoder-1.0.6/tidygeocoder/data/api_info_reference.rda |binary tidygeocoder-1.0.6/tidygeocoder/data/api_key_reference.rda |binary tidygeocoder-1.0.6/tidygeocoder/data/api_parameter_reference.rda |binary tidygeocoder-1.0.6/tidygeocoder/data/batch_limit_reference.rda |binary tidygeocoder-1.0.6/tidygeocoder/data/min_time_reference.rda |binary tidygeocoder-1.0.6/tidygeocoder/inst/CITATION | 33 tidygeocoder-1.0.6/tidygeocoder/inst/WORDLIST |only tidygeocoder-1.0.6/tidygeocoder/inst/doc/tidygeocoder.Rmd | 278 +- tidygeocoder-1.0.6/tidygeocoder/inst/doc/tidygeocoder.html | 1149 ++++++---- tidygeocoder-1.0.6/tidygeocoder/man/api_parameter_reference.Rd | 10 tidygeocoder-1.0.6/tidygeocoder/man/figures/README-usamap-1.png |binary tidygeocoder-1.0.6/tidygeocoder/man/geo.Rd | 128 - tidygeocoder-1.0.6/tidygeocoder/man/geo_combine.Rd | 47 tidygeocoder-1.0.6/tidygeocoder/man/geocode.Rd | 53 tidygeocoder-1.0.6/tidygeocoder/man/geocode_combine.Rd | 76 tidygeocoder-1.0.6/tidygeocoder/man/get_api_query.Rd | 12 tidygeocoder-1.0.6/tidygeocoder/man/louisville.Rd | 3 tidygeocoder-1.0.6/tidygeocoder/man/min_time_reference.Rd | 10 tidygeocoder-1.0.6/tidygeocoder/man/query_api.Rd | 30 tidygeocoder-1.0.6/tidygeocoder/man/reverse_geo.Rd | 90 tidygeocoder-1.0.6/tidygeocoder/man/reverse_geocode.Rd | 36 tidygeocoder-1.0.6/tidygeocoder/man/tidygeocoder-package.Rd | 5 tidygeocoder-1.0.6/tidygeocoder/tests/testthat/test-geocode-combine.R | 106 tidygeocoder-1.0.6/tidygeocoder/tests/testthat/test-geocode.R | 243 +- tidygeocoder-1.0.6/tidygeocoder/tests/testthat/test-utils.R | 131 - tidygeocoder-1.0.6/tidygeocoder/vignettes/tidygeocoder.Rmd | 278 +- tidygeocoder-1.0.6/tidygeocoder/vignettes/tidygeocoder.Rmd.orig | 4 52 files changed, 4516 insertions(+), 3886 deletions(-)
Title: Genome Wide Association Studies
Description: Fast single trait Genome Wide Association Studies (GWAS) following
the method described in Kang et al. (2010), <doi:10.1038/ng.548>.
One of a series of statistical genetic packages for streamlining the
analysis of typical plant breeding experiments developed by Biometris.
Author: Bart-Jan van Rossum [aut, cre]
,
Willem Kruijer [aut] ,
Fred van Eeuwijk [ctb] ,
Martin Boer [ctb] ,
Marcos Malosetti [ctb] ,
Daniela Bustos-Korts [ctb] ,
Emilie Millet [ctb] ,
Joao Paulo [ctb] ,
Maikel Verouden [ctb] ,
Ron Wehrens [ctb] ,
Choazhi Zh [...truncated...]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>
Diff between statgenGWAS versions 1.0.10 dated 2024-11-15 and 1.0.11 dated 2025-03-31
DESCRIPTION | 8 ++-- MD5 | 42 ++++++++++----------- NEWS.md | 7 +++ R/EMMA.R | 2 - R/GWASHelp.R | 14 ++++--- R/RcppExports.R | 2 - R/codeMarkers.R | 7 ++- R/createGData.R | 6 +-- R/createGWAS.R | 6 +-- R/fastGLS.R | 94 ++++++++++++++++++++++++------------------------- R/kinship.R | 2 - R/manhattanPlot.R | 2 - R/qtlPlot.R | 2 - R/readPlink.R | 2 - R/runSingleTraitGwas.R | 2 - build/partial.rdb |binary build/vignette.rds |binary configure | 4 +- configure.ac | 4 +- inst/doc/GWAS.html | 38 +++++++++---------- src/utils.cpp | 2 - tests/tinytest.R | 10 ++--- 22 files changed, 133 insertions(+), 123 deletions(-)
Title: Interface for the 'QuickJS' Lightweight 'JavaScript' Engine
Description: An 'R' interface to the 'QuickJS' portable 'JavaScript'
engine. The engine and all 'R' to 'JavaScript' interoperability is bundled
within the package, requiring no dependencies beyond a 'C' compiler.
Author: Andrew R. Johnson [aut, cre] ,
QuickJS Authors [cph] ,
QuickJS-NG Authors [cph]
Maintainer: Andrew R. Johnson <andrew.johnson@arjohnsonau.com>
Diff between QuickJSR versions 1.6.0 dated 2025-02-26 and 1.7.0 dated 2025-03-31
QuickJSR-1.6.0/QuickJSR/R/flags.R |only QuickJSR-1.6.0/QuickJSR/inst/include/quickjs |only QuickJSR-1.6.0/QuickJSR/man/cxxflags.Rd |only QuickJSR-1.6.0/QuickJSR/man/ldflags.Rd |only QuickJSR-1.7.0/QuickJSR/DESCRIPTION | 8 QuickJSR-1.7.0/QuickJSR/LICENSE | 4 QuickJSR-1.7.0/QuickJSR/MD5 | 133 QuickJSR-1.7.0/QuickJSR/NAMESPACE | 18 QuickJSR-1.7.0/QuickJSR/NEWS.md | 160 QuickJSR-1.7.0/QuickJSR/R/JSContext.R | 336 QuickJSR-1.7.0/QuickJSR/R/qjs.R | 158 QuickJSR-1.7.0/QuickJSR/R/quickjsr-package.R | 20 QuickJSR-1.7.0/QuickJSR/R/utils.R | 6 QuickJSR-1.7.0/QuickJSR/R/zzz.R | 8 QuickJSR-1.7.0/QuickJSR/README.md | 284 QuickJSR-1.7.0/QuickJSR/build/vignette.rds |binary QuickJSR-1.7.0/QuickJSR/inst/doc/working_with_js_types.R | 80 QuickJSR-1.7.0/QuickJSR/inst/doc/working_with_js_types.Rmd | 224 QuickJSR-1.7.0/QuickJSR/inst/doc/working_with_js_types.html | 1043 +- QuickJSR-1.7.0/QuickJSR/inst/include/quickjsr/JSCommonType.hpp | 2 QuickJSR-1.7.0/QuickJSR/inst/include/quickjsr/JSValue_to_SEXP.hpp | 2 QuickJSR-1.7.0/QuickJSR/inst/tinytest/test_JSContext.R | 94 QuickJSR-1.7.0/QuickJSR/inst/tinytest/test_data_conversion.R | 144 QuickJSR-1.7.0/QuickJSR/inst/tinytest/test_qjs_eval.R | 16 QuickJSR-1.7.0/QuickJSR/inst/tinytest/test_to_json_asis.R | 20 QuickJSR-1.7.0/QuickJSR/inst/tinytest/test_to_json_dataframe.R | 32 QuickJSR-1.7.0/QuickJSR/inst/tinytest/test_to_json_date.R | 28 QuickJSR-1.7.0/QuickJSR/inst/tinytest/test_to_json_factor.R | 12 QuickJSR-1.7.0/QuickJSR/inst/tinytest/test_to_json_matrix.R | 22 QuickJSR-1.7.0/QuickJSR/man/JSContext-method-assign.Rd | 64 QuickJSR-1.7.0/QuickJSR/man/JSContext-method-call.Rd | 66 QuickJSR-1.7.0/QuickJSR/man/JSContext-method-get.Rd | 60 QuickJSR-1.7.0/QuickJSR/man/JSContext-method-source.Rd | 70 QuickJSR-1.7.0/QuickJSR/man/JSContext-method-validate.Rd | 58 QuickJSR-1.7.0/QuickJSR/man/JSContext.Rd | 42 QuickJSR-1.7.0/QuickJSR/man/QuickJSR-package.Rd | 58 QuickJSR-1.7.0/QuickJSR/man/from_json.Rd | 34 QuickJSR-1.7.0/QuickJSR/man/qjs_eval.Rd | 56 QuickJSR-1.7.0/QuickJSR/man/quickjs_version.Rd | 28 QuickJSR-1.7.0/QuickJSR/man/to_json.Rd | 38 QuickJSR-1.7.0/QuickJSR/src/Makevars | 14 QuickJSR-1.7.0/QuickJSR/src/libquickjs.c | 14 QuickJSR-1.7.0/QuickJSR/src/quickjs/CMakeLists.txt | 843 +- QuickJSR-1.7.0/QuickJSR/src/quickjs/LICENSE | 48 QuickJSR-1.7.0/QuickJSR/src/quickjs/README.md | 48 QuickJSR-1.7.0/QuickJSR/src/quickjs/amalgam.js |only QuickJSR-1.7.0/QuickJSR/src/quickjs/api-test.c | 100 QuickJSR-1.7.0/QuickJSR/src/quickjs/meson.build |only QuickJSR-1.7.0/QuickJSR/src/quickjs/meson_options.txt |only QuickJSR-1.7.0/QuickJSR/src/quickjs/qjs.c | 12 QuickJSR-1.7.0/QuickJSR/src/quickjs/quickjs-libc.c | 487 - QuickJSR-1.7.0/QuickJSR/src/quickjs/quickjs-libc.h | 6 QuickJSR-1.7.0/QuickJSR/src/quickjs/quickjs.c | 3009 ++++--- QuickJSR-1.7.0/QuickJSR/src/quickjs/quickjs.h | 378 QuickJSR-1.7.0/QuickJSR/src/quickjs/repl.js | 3782 +++++----- QuickJSR-1.7.0/QuickJSR/src/quickjs/run-test262.c | 66 QuickJSR-1.7.0/QuickJSR/src/quickjs/standalone.js | 258 QuickJSR-1.7.0/QuickJSR/src/quickjs/test262-fast.conf | 264 QuickJSR-1.7.0/QuickJSR/src/quickjs/test262.conf | 789 +- QuickJSR-1.7.0/QuickJSR/src/quickjs/test262_errors.txt | 166 QuickJSR-1.7.0/QuickJSR/src/quickjs/tests.conf | 20 QuickJSR-1.7.0/QuickJSR/src/quickjs/unicode_download.sh | 38 QuickJSR-1.7.0/QuickJSR/tests/tinytest.R | 10 QuickJSR-1.7.0/QuickJSR/vignettes/working_with_js_types.Rmd | 224 64 files changed, 7174 insertions(+), 6830 deletions(-)
Title: Lemna Ecotox Effect Model
Description: The reference implementation of model equations and default
parameters for the toxicokinetic-toxicodynamic (TKTD) model of the Lemna
(duckweed) aquatic plant. Lemna is a standard test macrophyte used in ecotox
effect studies. The model was described and published by the SETAC Europe
Interest Group Effect Modeling. It is a refined description of the Lemna
TKTD model published by Schmitt et al. (2013)
<doi:10.1016/j.ecolmodel.2013.01.017>.
Author: Nils Kehrein [aut, cre],
SETAC Europe IG Effect Modeling [ccp]
Maintainer: Nils Kehrein <nils.kehrein@gmail.com>
Diff between lemna versions 1.0.1 dated 2023-04-22 and 1.0.2 dated 2025-03-31
lemna-1.0.1/lemna/vignettes/mmc2.r |only lemna-1.0.1/lemna/vignettes/mmc3.r |only lemna-1.0.2/lemna/DESCRIPTION | 10 lemna-1.0.2/lemna/LICENSE | 2 lemna-1.0.2/lemna/MD5 | 108 - lemna-1.0.2/lemna/NAMESPACE | 38 lemna-1.0.2/lemna/NEWS.md | 24 lemna-1.0.2/lemna/R/data.R | 292 +- lemna-1.0.2/lemna/R/effect.R | 22 lemna-1.0.2/lemna/R/lemna-package.R | 14 lemna-1.0.2/lemna/R/lemna.R | 13 lemna-1.0.2/lemna/R/lemna_ode.R | 262 +- lemna-1.0.2/lemna/R/lemna_scenario.R | 50 lemna-1.0.2/lemna/R/param.R | 10 lemna-1.0.2/lemna/R/plot.R | 184 - lemna-1.0.2/lemna/README.md | 192 - lemna-1.0.2/lemna/build/partial.rdb |binary lemna-1.0.2/lemna/build/vignette.rds |binary lemna-1.0.2/lemna/data/focusd1.rda |binary lemna-1.0.2/lemna/data/focusd2.rda |binary lemna-1.0.2/lemna/data/focusr3.rda |binary lemna-1.0.2/lemna/data/metsulfuron.rda |binary lemna-1.0.2/lemna/inst/doc/lemna-introduction.Rmd | 2 lemna-1.0.2/lemna/inst/doc/lemna-introduction.html | 630 +++--- lemna-1.0.2/lemna/inst/doc/lemna-verification.Rmd | 1558 ++++++++------- lemna-1.0.2/lemna/inst/doc/lemna-verification.html | 1086 +++++----- lemna-1.0.2/lemna/man/effect.Rd | 122 - lemna-1.0.2/lemna/man/figures/README-example-1.png |binary lemna-1.0.2/lemna/man/focusd1.Rd | 76 lemna-1.0.2/lemna/man/focusd2.Rd | 76 lemna-1.0.2/lemna/man/focusr3.Rd | 76 lemna-1.0.2/lemna/man/hommen212.Rd | 58 lemna-1.0.2/lemna/man/lemna.Rd | 524 ++--- lemna-1.0.2/lemna/man/lemna_desolve.Rd | 38 lemna-1.0.2/lemna/man/metsulfuron.Rd | 94 lemna-1.0.2/lemna/man/new_lemna_scenario.Rd | 58 lemna-1.0.2/lemna/man/param_defaults.Rd | 248 +- lemna-1.0.2/lemna/man/plot.lemna_result.Rd | 92 lemna-1.0.2/lemna/man/schmitt77.Rd | 56 lemna-1.0.2/lemna/tests/testthat.R | 8 lemna-1.0.2/lemna/tests/testthat/mmc2.r | 346 +-- lemna-1.0.2/lemna/tests/testthat/mmc3.r | 798 +++---- lemna-1.0.2/lemna/tests/testthat/test-effect.R | 90 lemna-1.0.2/lemna/tests/testthat/test-lemna.R | 80 lemna-1.0.2/lemna/tests/testthat/test-param.R | 6 lemna-1.0.2/lemna/tests/testthat/test-verify-unlimited.R | 18 lemna-1.0.2/lemna/tests/testthat/test-verify-variable.R | 154 - lemna-1.0.2/lemna/vignettes/lemna-introduction.Rmd | 2 lemna-1.0.2/lemna/vignettes/lemna-verification.Rmd | 1558 ++++++++------- lemna-1.0.2/lemna/vignettes/verify_2d12d-klein-1.png |only lemna-1.0.2/lemna/vignettes/verify_2d5d-klein-1.png |only lemna-1.0.2/lemna/vignettes/verify_4d3d-klein-1.png |only lemna-1.0.2/lemna/vignettes/verify_7d7d-dev-1.png |only lemna-1.0.2/lemna/vignettes/verify_7d7d-klein-1.png |only lemna-1.0.2/lemna/vignettes/verify_7d7d-relative-1.png |only lemna-1.0.2/lemna/vignettes/verify_7d7d-schmitt-1.png |only lemna-1.0.2/lemna/vignettes/verify_D1_rainbow-1.png |only lemna-1.0.2/lemna/vignettes/verify_D1_rainbow-2.png |only lemna-1.0.2/lemna/vignettes/verify_D2_rainbow-1.png |only lemna-1.0.2/lemna/vignettes/verify_D2_rainbow-2.png |only lemna-1.0.2/lemna/vignettes/verify_R3_rainbow-1.png |only lemna-1.0.2/lemna/vignettes/verify_R3_rainbow-2.png |only lemna-1.0.2/lemna/vignettes/verify_complex-1.png |only 63 files changed, 4740 insertions(+), 4335 deletions(-)
Title: Wearable Accelerometer Data File Readers
Description: Reads data collected from wearable acceleratometers as used in sleep and physical activity research. Currently supports file formats: binary data from 'GENEActiv' <https://activinsights.com/>, .bin-format from GENEA devices (not for sale), and .cwa-format from 'Axivity' <https://axivity.com>. Further, it has functions for reading text files with epoch level aggregates from 'Actical', 'Fitbit', 'Actiwatch', 'ActiGraph', and 'PhilipsHealthBand'. Primarily designed to complement R package GGIR <https://CRAN.R-project.org/package=GGIR>.
Author: Vincent T van Hees [aut, cre],
Patrick Bos [aut] ,
Lena Kushleyeva [ctb],
Jing Hua Zhao [ctb],
Evgeny Mirkes [ctb],
Dan Jackson [ctb],
Jairo H Migueles [ctb],
Medical Research Council UK [cph, fnd],
Accelting [cph, fnd]
Maintainer: Vincent T van Hees <v.vanhees@accelting.com>
Diff between GGIRread versions 1.0.3 dated 2025-03-07 and 1.0.4 dated 2025-03-31
DESCRIPTION | 10 +++---- MD5 | 36 ++++++++++++++++--------- NAMESPACE | 2 - NEWS.md | 6 ++++ R/RcppExports.R | 4 ++ R/mergeFitbitData.R | 43 ++++++++++++++++++++++++++----- R/readActiwatchCount.R | 4 +- R/readFitbit.R | 39 +++++++++++----------------- R/readParmayMatrix.R |only README.md | 1 inst/testfiles/mtx_100Hz_acc_HR_temp.BIN |only inst/testfiles/mtx_12.5Hz_acc.BIN |only inst/testfiles/mtx_12.5Hz_acc_gyro.BIN |only inst/testfiles/mtx_25Hz_acc_HR.BIN |only inst/testfiles/mtx_corrupted.bin |only inst/testfiles/mtx_corrupted_full.bin |only man/GGIRread-package.Rd | 4 +- man/readParmayMatrix.Rd |only src/RcppExports.cpp | 13 +++++++++ src/find_matrix_packet_start.cpp |only src/init.c | 2 + tests/testthat/test_mergeFitbitData.R | 8 +++-- tests/testthat/test_readFitbit.R | 12 ++++---- tests/testthat/test_readParmayMatrix.R |only 24 files changed, 123 insertions(+), 61 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-01-31 1.6.0-6
2025-01-10 1.6.0-5
2024-12-02 1.6.0-4
2024-11-01 1.6.0-3
2024-09-27 1.6.0-2
2024-09-10 1.6.0-1
2022-12-01 1.5.0-9.1
2022-04-05 1.5.0-3
2021-11-18 1.5.0-1
2021-11-16 1.5.0
2021-03-17 1.4.2.2
2021-01-13 1.4.2.1
2020-04-22 1.4.2
2020-04-03 1.4.1
2020-02-05 1.4
2018-06-05 1.3.11
2018-06-04 1.3.10
Title: Synthetic Likelihood Methods for Intractable Likelihoods
Description: Framework to perform synthetic likelihood inference
for models where the likelihood function is unavailable or
intractable.
Author: Matteo Fasiolo [aut, cre],
Simon Wood [aut]
Maintainer: Matteo Fasiolo <matteo.fasiolo@gmail.com>
Diff between synlik versions 0.1.6 dated 2023-03-02 and 0.1.7 dated 2025-03-31
synlik-0.1.6/synlik/NEWS |only synlik-0.1.6/synlik/README.md |only synlik-0.1.6/synlik/TODO |only synlik-0.1.7/synlik/DESCRIPTION | 21 + synlik-0.1.7/synlik/MD5 | 27 +- synlik-0.1.7/synlik/R/slice_synlik.R | 2 synlik-0.1.7/synlik/build/vignette.rds |binary synlik-0.1.7/synlik/inst/doc/synlik.R | 2 synlik-0.1.7/synlik/inst/doc/synlik.html | 349 +++++++++++++------------------ synlik-0.1.7/synlik/man/robCov.Rd | 8 synlik-0.1.7/synlik/man/slice.Rd | 2 synlik-0.1.7/synlik/src/acf.c | 5 synlik-0.1.7/synlik/src/blowfly.c | 6 synlik-0.1.7/synlik/src/mat.c | 5 synlik-0.1.7/synlik/src/nlar.c | 5 synlik-0.1.7/synlik/src/summ_stats.h | 19 + 16 files changed, 206 insertions(+), 245 deletions(-)
Title: API Client for the 'ClimMob' Platform
Description: API client for 'ClimMob', an open source software for decentralized
large-N trials with the 'tricot' approach <https://climmob.net/>.
Developed by van Etten et al. (2019) <doi:10.1017/S0014479716000739>, it turns the
research paradigm on its head; instead of a few researchers designing complicated
trials to compare several technologies in search of the best solutions for the
target environment, it enables many participants to carry out reasonably simple
experiments that taken together can offer even more information. 'ClimMobTools'
enables project managers to deep explore and analyse their 'ClimMob' data in R.
Author: Kaue de Sousa [aut, cre] ,
Jacob van Etten [aut] ,
Brandon Madriz [aut]
Maintainer: Kaue de Sousa <desousa.kaue@gmail.com>
Diff between ClimMobTools versions 1.4 dated 2025-01-16 and 1.5 dated 2025-03-31
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 9 ++++++++- R/AAA-getDataCM.R | 2 ++ R/as.data.frame-climmob_list.R | 12 ++++++------ R/getProjectsCM.R | 7 ++++--- R/internal_functions.R | 1 + man/getProjectsCM.Rd | 3 ++- 8 files changed, 35 insertions(+), 23 deletions(-)
Title: Formal Psychological Models of Categorization and Learning
Description: Formal psychological models of categorization and learning, independently-replicated data sets against which to test them, and simulation archives.
Author: Andy Wills [aut, cre],
Lenard Dome [aut],
Charlotte Edmunds [aut],
Garrett Honke [aut],
Angus Inkster [aut],
Rene Schlegelmilch [aut],
Stuart Spicer [aut]
Maintainer: Andy Wills <andy@willslab.co.uk>
Diff between catlearn versions 1.0 dated 2023-04-04 and 1.1 dated 2025-03-31
DESCRIPTION | 40 +++++++++++++++++++++++++++++++++++----- MD5 | 7 ++++--- man/catlearn-package.Rd | 2 +- man/slpDGCM.Rd | 4 ++-- src/Makevars |only 5 files changed, 42 insertions(+), 11 deletions(-)
Title: Bindings to 'OpenCV' Computer Vision Library
Description: Exposes some of the available 'OpenCV' <https://opencv.org/> algorithms,
such as a QR code scanner, and edge, body or face detection. These can either be
applied to analyze static images, or to filter live video footage from a camera device.
Author: Jeroen Ooms [aut, cre] ,
Jan Wijffels [aut]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between opencv versions 0.5.0 dated 2025-03-06 and 0.5.1 dated 2025-03-31
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- src/Makevars.in | 5 +++++ src/Makevars.win | 12 ++++++------ tools/winlibs.R | 10 +++++----- 5 files changed, 23 insertions(+), 18 deletions(-)
Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear mixed-effects models.
Author: Jose Pinheiro [aut] ,
Douglas Bates [aut] ,
Saikat DebRoy [ctb] ,
Deepayan Sarkar [ctb] ,
EISPACK authors [ctb] ,
Siem Heisterkamp [ctb] ,
Bert Van Willigen [ctb] ,
Johannes Ranke [ctb] ),
R Core Team [aut, cre]
Maintainer: R Core Team <R-core@R-project.org>
Diff between nlme versions 3.1-167 dated 2025-01-27 and 3.1-168 dated 2025-03-31
ChangeLog | 9 ++++ DESCRIPTION | 8 ++-- MD5 | 96 ++++++++++++++++++++++++------------------------- data/Alfalfa.rda |binary data/Assay.rda |binary data/BodyWeight.rda |binary data/Cefamandole.rda |binary data/Dialyzer.rda |binary data/Earthquake.rda |binary data/Fatigue.rda |binary data/Gasoline.rda |binary data/Glucose.rda |binary data/Glucose2.rda |binary data/Gun.rda |binary data/IGF.rda |binary data/Machines.rda |binary data/MathAchSchool.rda |binary data/MathAchieve.rda |binary data/Meat.rda |binary data/Milk.rda |binary data/Muscle.rda |binary data/Nitrendipene.rda |binary data/Oats.rda |binary data/Orthodont.rda |binary data/Ovary.rda |binary data/Oxboys.rda |binary data/Oxide.rda |binary data/PBG.rda |binary data/Phenobarb.rda |binary data/Pixel.rda |binary data/Quinidine.rda |binary data/Rail.rda |binary data/RatPupWeight.rda |binary data/Relaxin.rda |binary data/Remifentanil.rda |binary data/Soybean.rda |binary data/Spruce.rda |binary data/Tetracycline1.rda |binary data/Tetracycline2.rda |binary data/Wafer.rda |binary data/Wheat.rda |binary data/Wheat2.rda |binary data/bdf.rda |binary data/ergoStool.rda |binary po/R-de.po | 28 ++++++++------ po/R-fr.po | 10 ++++- po/R-ko.po | 9 +++- po/R-nlme.pot | 9 +++- po/R-pl.po | 10 ++++- 49 files changed, 106 insertions(+), 73 deletions(-)
Title: Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata',
'Systat', 'Weka', 'dBase', ...
Description: Reading and writing data stored by some versions of
'Epi Info', 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka',
and for reading and writing some 'dBase' files.
Author: R Core Team [aut, cph, cre] ,
Roger Bivand [ctb, cph],
Vincent J. Carey [ctb, cph],
Saikat DebRoy [ctb, cph],
Stephen Eglen [ctb, cph],
Rajarshi Guha [ctb, cph],
Swetlana Herbrandt [ctb],
Nicholas Lewin-Koh [ctb, cph],
Mark Myatt [ctb, cph],
Michael [...truncated...]
Maintainer: R Core Team <R-core@R-project.org>
Diff between foreign versions 0.8-89 dated 2025-03-25 and 0.8-90 dated 2025-03-31
ChangeLog | 5 +++++ DESCRIPTION | 8 ++++---- MD5 | 6 +++--- po/de.po | 36 ++++++++++++++++++------------------ 4 files changed, 30 insertions(+), 25 deletions(-)
Title: 'DT' Extension for CRUD (Create, Read, Update, Delete)
Applications in 'shiny'
Description: The core of this package is a function eDT() which enhances DT::datatable() such that it can be used to interactively modify data in 'shiny'. By the use of generic 'dplyr' methods it supports many types of data storage, with relational databases ('dbplyr') being the main use case.
Author: Jasper Schelfhout [aut, cre],
Maxim Nazarov [rev],
Daan Seynaeve [rev],
Lennart Tuijnder [rev],
Saar Junius [ctb]
Maintainer: Jasper Schelfhout <jasper.schelfhout@openanalytics.eu>
Diff between editbl versions 1.1.0 dated 2025-01-31 and 1.2.0 dated 2025-03-31
DESCRIPTION | 17 ++++++++++------- MD5 | 24 ++++++++++++------------ R/eDT.R | 26 +++++++++++++++++++++++++- build/vignette.rds |binary inst/NEWS | 3 +++ inst/doc/howto_relational_db.html | 19 ++++++++++--------- inst/doc/howto_relational_db_dm.html | 13 +++++++------ inst/doc/howto_row_level_access.html | 24 +++++++++++++----------- inst/doc/howto_row_level_access.rmd | 6 +++--- inst/doc/howto_switch_from_DT.html | 13 +++++++------ man/eDT.Rd | 3 +++ tests/testthat/test-eDT.R | 10 ++++++---- vignettes/howto_row_level_access.rmd | 6 +++--- 13 files changed, 102 insertions(+), 62 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-03-30 0.9.7
Title: Rapid Manipulation of the Variant Call Format (VCF)
Description: The 'vcfpp.h' (<https://github.com/Zilong-Li/vcfpp>) provides an easy-to-use 'C++' 'API' of 'htslib', offering full functionality for manipulating Variant Call Format (VCF) files. The 'vcfppR' package serves as the R bindings of the 'vcfpp.h' library, enabling rapid processing of both compressed and uncompressed VCF files. Explore a range of powerful features for efficient VCF data manipulation.
Author: Zilong Li [aut, cre] ,
Bonfield, James K and Marshall, John and Danecek, Petr and Li, Heng and
Ohan, Valeriu and Whitwham, Andrew and Keane, Thomas and Davies,
Robert M [cph]
Maintainer: Zilong Li <zilong.dk@gmail.com>
Diff between vcfppR versions 0.7.1 dated 2024-12-26 and 0.7.6 dated 2025-03-31
vcfppR-0.7.1/vcfppR/src/Makevars |only vcfppR-0.7.6/vcfppR/DESCRIPTION | 10 vcfppR-0.7.6/vcfppR/MD5 | 117 +++++--- vcfppR-0.7.6/vcfppR/NEWS.md | 15 + vcfppR-0.7.6/vcfppR/R/common.R | 80 ++--- vcfppR-0.7.6/vcfppR/R/vcf-compare.R | 5 vcfppR-0.7.6/vcfppR/cleanup | 5 vcfppR-0.7.6/vcfppR/cleanup.win | 5 vcfppR-0.7.6/vcfppR/configure | 27 + vcfppR-0.7.6/vcfppR/configure.win | 2 vcfppR-0.7.6/vcfppR/inst/doc/concordance-of-two-vcf-files.R | 20 - vcfppR-0.7.6/vcfppR/inst/extdata/test.bcf |only vcfppR-0.7.6/vcfppR/inst/extdata/test.bcf.csi |only vcfppR-0.7.6/vcfppR/inst/include/htslib |only vcfppR-0.7.6/vcfppR/inst/include/vcfpp.h | 12 vcfppR-0.7.6/vcfppR/man/vcfcomp.Rd | 1 vcfppR-0.7.6/vcfppR/src/Makevars.win | 2 vcfppR-0.7.6/vcfppR/src/htslib-1.21/annot-tsv.c | 4 vcfppR-0.7.6/vcfppR/src/htslib-1.21/bcf_sr_sort.c | 59 ---- vcfppR-0.7.6/vcfppR/src/htslib-1.21/bgzf.c | 8 vcfppR-0.7.6/vcfppR/src/htslib-1.21/config.log | 142 +++++----- vcfppR-0.7.6/vcfppR/src/htslib-1.21/config.mk | 2 vcfppR-0.7.6/vcfppR/src/htslib-1.21/config.status | 8 vcfppR-0.7.6/vcfppR/src/htslib-1.21/cram/cram_codecs.c | 22 - vcfppR-0.7.6/vcfppR/src/htslib-1.21/cram/mFILE.c | 32 -- vcfppR-0.7.6/vcfppR/src/htslib-1.21/cram/mFILE.h | 2 vcfppR-0.7.6/vcfppR/src/htslib-1.21/faidx.c | 2 vcfppR-0.7.6/vcfppR/src/htslib-1.21/hfile_gcs.c | 8 vcfppR-0.7.6/vcfppR/src/htslib-1.21/hfile_libcurl.c | 2 vcfppR-0.7.6/vcfppR/src/htslib-1.21/hfile_s3_write.c | 12 vcfppR-0.7.6/vcfppR/src/htslib-1.21/hts.c | 107 ++----- vcfppR-0.7.6/vcfppR/src/htslib-1.21/hts_expr.c | 8 vcfppR-0.7.6/vcfppR/src/htslib-1.21/htscodecs/htscodecs/rANS_static32x16pr.c | 4 vcfppR-0.7.6/vcfppR/src/htslib-1.21/htscodecs/htscodecs/rANS_static32x16pr_neon.c | 2 vcfppR-0.7.6/vcfppR/src/htslib-1.21/htscodecs/htscodecs/rANS_static4x16pr.c | 12 vcfppR-0.7.6/vcfppR/src/htslib-1.21/htscodecs/htscodecs/tokenise_name3.c | 77 ----- vcfppR-0.7.6/vcfppR/src/htslib-1.21/htscodecs/htscodecs/utils.c | 36 -- vcfppR-0.7.6/vcfppR/src/htslib-1.21/htscodecs/htscodecs/varint2.h | 10 vcfppR-0.7.6/vcfppR/src/htslib-1.21/htsfile.c | 109 ------- vcfppR-0.7.6/vcfppR/src/htslib-1.21/sam.c | 5 vcfppR-0.7.6/vcfppR/src/htslib-1.21/synced_bcf_reader.c | 16 - vcfppR-0.7.6/vcfppR/src/htslib-1.21/tabix.c | 4 vcfppR-0.7.6/vcfppR/src/htslib-1.21/thread_pool.c | 4 vcfppR-0.7.6/vcfppR/src/htslib-1.21/vcf.c | 52 +-- vcfppR-0.7.6/vcfppR/src/htslib-1.21/vcfutils.c | 10 vcfppR-0.7.6/vcfppR/tests/testthat/test-vcf-comp.R | 2 vcfppR-0.7.6/vcfppR/tests/testthat/test-vcf-reader.R | 13 vcfppR-0.7.6/vcfppR/tests/testthat/test-vcf-table.R | 7 48 files changed, 411 insertions(+), 671 deletions(-)
Title: 'Canvas' LMS API Integration
Description: Allow R users to interact with the 'Canvas' Learning Management System (LMS) API (see
<https://canvas.instructure.com/doc/api/all_resources.html> for details).
It provides a set of functions to access and manipulate course data, assignments, grades, users,
and other resources available through the 'Canvas' API.
Author: Tomer Iwan [aut, cre],
Niels Smits [ctb] ,
VU Analytics [cph]
Maintainer: Tomer Iwan <t.iwan@vu.nl>
Diff between vvcanvas versions 0.0.4 dated 2024-04-29 and 0.0.5 dated 2025-03-31
DESCRIPTION | 29 ++++++++++++----- MD5 | 58 +++++++++++++++++++++++++--------- NAMESPACE | 11 ++++++ NEWS.md | 3 + R/create_module.R |only R/create_module_item.R |only R/delete_page.R |only R/get_assignment_groups.R |only R/get_course_announcements.R | 4 +- R/get_course_files.R | 4 +- R/get_course_folders.R | 4 +- R/get_course_media_objects.R |only R/get_course_quizzes.R | 4 +- R/get_course_students.R | 4 +- R/get_course_users.R |only R/get_discussions.R | 4 +- R/get_modules.R | 4 +- R/get_page_content.R | 11 ++++-- R/get_section_students.R |only R/list_all_enrollment_terms.R |only R/update_page.R |only R/update_quiz.R |only R/upload_file.R |only R/upload_qti_file_with_migration.R |only README.md | 10 +++++ build/vignette.rds |binary inst/doc/QTI_quiz.R |only inst/doc/QTI_quiz.Rmd |only inst/doc/QTI_quiz.html |only man/create_module.Rd |only man/create_module_item.Rd |only man/delete_page.Rd |only man/get_assignment_groups.Rd |only man/get_course_media_objects.Rd |only man/get_course_users.Rd |only man/get_page_content.Rd | 6 ++- man/get_roles.Rd | 42 ++++++++++++------------ man/get_section_students.Rd |only man/list_all_enrollment_terms.Rd |only man/update_page.Rd |only man/update_quiz.Rd |only man/upload_file.Rd |only man/upload_qti_file_with_migration.Rd |only vignettes/QTI_quiz.Rmd |only 44 files changed, 141 insertions(+), 57 deletions(-)
Title: Total, Between-, and Within-Cluster Spearman Rank Correlations
for Clustered Data
Description: Estimates the total, between-, and within-cluster Spearman rank correlations for continuous and ordinal clustered data. See Tu et al. (2024) <DOI:10.1002/sim.10326> for details.
Author: Shengxin Tu [aut, cre],
Chun Li [aut],
Bryan Shepherd [aut]
Maintainer: Shengxin Tu <shengxin.tu@vanderbilt.edu>
Diff between rankCorr versions 1.0.1 dated 2023-11-16 and 1.0.2 dated 2025-03-31
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/rankCorrCluster.R | 6 +++--- man/rankCorrCluster.Rd | 2 +- 4 files changed, 12 insertions(+), 12 deletions(-)
Title: Derive a Color Palette from a Particular Location on Earth
Description: Downloads a satellite image via ESRI and maptiles (these are
originally from a variety of aerial photography sources),
translates the image into a perceptually uniform color space,
runs one of a few different clustering algorithms on the colors in the image
searching for a user-supplied number of colors,
and returns the resulting color palette.
Author: Will Cornwell [aut, cre] ,
Mitch Lyons [aut],
Nick Murray [aut]
Maintainer: Will Cornwell <wcornwell@gmail.com>
Diff between earthtones versions 0.1.1 dated 2019-01-13 and 0.2.0 dated 2025-03-31
DESCRIPTION | 30 ++++-- MD5 | 15 +-- NAMESPACE | 2 NEWS.md | 4 R/earth.R | 199 +++++++++++++++++++++++++++++--------------- README.md |only man/get_earthtones.Rd | 56 ++++++++---- man/print.palette.Rd |only tests/testthat/Rplots.pdf |only tests/testthat/test-earth.R | 4 10 files changed, 209 insertions(+), 101 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-10-01 1.5.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-18 0.1.2
2019-03-04 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-11-08 0.3.3
2024-05-28 0.3.1
2024-02-01 0.2.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-24 1.0.3
2016-11-17 1.0.1
2016-08-02 1.0.0
Title: Test Suite for 'Future API' Backends
Description: Backends implementing the 'Future' API <doi:10.32614/RJ-2021-048>, as defined by the 'future' package, should use the tests provided by this package to validate that they meet the minimal requirements of the 'Future' API. The tests can be performed easily from within R or from outside of R from the command line making it straightforward to include them in package tests and in Continuous Integration (CI) pipelines.
Author: Henrik Bengtsson [aut, cre, cph],
The R Consortium [fnd] grant in 2017)
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future.tests versions 0.7.0 dated 2023-05-22 and 0.8.0 dated 2025-03-31
DESCRIPTION | 14 ++--- MD5 | 36 +++++++------- NAMESPACE | 1 NEWS.md | 21 +++++++- R/check.R | 4 + R/run_test.R | 3 - R/test_db.R | 4 + build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/future.tests-01-intro.html | 10 ++-- inst/doc/future.tests-01-intro.md | 15 +++--- inst/doc/future.tests-05-ci-github_actions.html | 58 ++++++++++------------- inst/doc/future.tests-05-ci-github_actions.md | 60 ++++++++++-------------- inst/test-db/lazy.R | 10 ++++ inst/test-db/resolve.R | 1 inst/test-db/resolved-lazy.R | 18 ++++--- tests/test_plans.R | 3 - vignettes/future.tests-01-intro.md | 15 +++--- vignettes/future.tests-05-ci-github_actions.md | 60 ++++++++++-------------- 19 files changed, 178 insertions(+), 157 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-03-17 0.2
2024-09-22 0.1.7
2024-09-09 0.1.6
2024-08-16 0.1.5
2024-07-30 0.1.4
2024-07-20 0.1.3
2024-05-24 0.1.2
2024-04-30 0.1.1
2024-04-18 0.1